Multiple sequence alignment - TraesCS7A01G173500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G173500 chr7A 100.000 7487 0 0 1 7487 127840954 127833468 0.000000e+00 13826.0
1 TraesCS7A01G173500 chr7A 93.923 181 10 1 6871 7050 127833868 127833688 9.570000e-69 272.0
2 TraesCS7A01G173500 chr7A 93.923 181 10 1 7087 7267 127834084 127833905 9.570000e-69 272.0
3 TraesCS7A01G173500 chr7A 97.778 45 1 0 5953 5997 127834751 127834707 2.240000e-10 78.7
4 TraesCS7A01G173500 chr7A 97.778 45 1 0 6204 6248 127835002 127834958 2.240000e-10 78.7
5 TraesCS7A01G173500 chr7D 97.346 3391 64 8 2538 5916 127135107 127131731 0.000000e+00 5740.0
6 TraesCS7A01G173500 chr7D 94.664 1518 58 11 5987 7487 127131602 127130091 0.000000e+00 2333.0
7 TraesCS7A01G173500 chr7D 86.147 1783 129 52 1 1733 127137630 127135916 0.000000e+00 1816.0
8 TraesCS7A01G173500 chr7D 93.760 625 34 4 1916 2539 127135765 127135145 0.000000e+00 933.0
9 TraesCS7A01G173500 chr7D 85.026 581 53 26 1114 1670 496315487 496316057 1.820000e-155 560.0
10 TraesCS7A01G173500 chr7D 93.289 298 17 2 2735 3032 496335747 496336041 3.210000e-118 436.0
11 TraesCS7A01G173500 chr7D 93.370 181 11 1 6871 7050 127130495 127130315 4.450000e-67 267.0
12 TraesCS7A01G173500 chr7D 92.265 181 13 1 7087 7267 127130711 127130532 9.640000e-64 255.0
13 TraesCS7A01G173500 chr7D 90.909 165 14 1 2539 2703 496335583 496335746 3.520000e-53 220.0
14 TraesCS7A01G173500 chr7B 96.994 3427 78 7 2537 5944 88640603 88637183 0.000000e+00 5734.0
15 TraesCS7A01G173500 chr7B 91.051 2570 163 34 1 2539 88643175 88640642 0.000000e+00 3410.0
16 TraesCS7A01G173500 chr7B 93.653 898 41 11 5987 6873 88636967 88636075 0.000000e+00 1328.0
17 TraesCS7A01G173500 chr7B 94.759 477 17 5 6887 7360 88635967 88635496 0.000000e+00 736.0
18 TraesCS7A01G173500 chr7B 92.350 183 9 3 6871 7050 88635767 88635587 9.640000e-64 255.0
19 TraesCS7A01G173500 chr7B 93.939 165 9 1 7103 7267 88635967 88635804 1.610000e-61 248.0
20 TraesCS7A01G173500 chr4B 83.109 1190 157 29 4568 5737 663750292 663751457 0.000000e+00 1044.0
21 TraesCS7A01G173500 chr4B 78.332 1283 184 57 2706 3931 663748255 663749500 0.000000e+00 743.0
22 TraesCS7A01G173500 chr4B 83.054 596 79 10 1944 2528 663746977 663747561 8.610000e-144 521.0
23 TraesCS7A01G173500 chr4B 82.765 586 90 10 3977 4557 663749661 663750240 5.180000e-141 512.0
24 TraesCS7A01G173500 chr4B 81.660 518 72 17 5987 6493 663751618 663752123 6.990000e-110 409.0
25 TraesCS7A01G173500 chr4B 81.637 452 59 16 999 1446 663745305 663745736 3.320000e-93 353.0
26 TraesCS7A01G173500 chr4B 94.286 35 0 1 7426 7458 258785052 258785086 1.400000e-02 52.8
27 TraesCS7A01G173500 chrUn 85.266 638 64 20 1701 2322 20484641 20484018 1.370000e-176 630.0
28 TraesCS7A01G173500 chrUn 84.694 588 49 23 1114 1670 20485210 20484633 3.950000e-152 549.0
29 TraesCS7A01G173500 chrUn 94.295 298 17 0 2735 3032 20434366 20434069 2.460000e-124 457.0
30 TraesCS7A01G173500 chrUn 93.243 222 12 2 2320 2539 20434786 20434566 2.610000e-84 324.0
31 TraesCS7A01G173500 chrUn 92.262 168 12 1 2536 2703 20434533 20434367 3.490000e-58 237.0
32 TraesCS7A01G173500 chr3A 83.929 112 16 2 6014 6124 11392478 11392588 1.030000e-18 106.0
33 TraesCS7A01G173500 chr3A 81.982 111 20 0 6014 6124 10592440 10592550 2.220000e-15 95.3
34 TraesCS7A01G173500 chr3A 78.632 117 25 0 6359 6475 11392678 11392794 2.240000e-10 78.7
35 TraesCS7A01G173500 chr3D 81.579 114 21 0 6362 6475 9732682 9732569 2.220000e-15 95.3
36 TraesCS7A01G173500 chr3D 87.654 81 10 0 6044 6124 9732855 9732775 2.220000e-15 95.3
37 TraesCS7A01G173500 chr4D 94.444 36 0 1 7431 7466 206050915 206050882 4.000000e-03 54.7
38 TraesCS7A01G173500 chr4A 88.889 45 3 1 7422 7466 240374623 240374665 4.000000e-03 54.7
39 TraesCS7A01G173500 chr5B 100.000 28 0 0 7431 7458 21728215 21728188 1.400000e-02 52.8
40 TraesCS7A01G173500 chr2A 100.000 28 0 0 7431 7458 233161684 233161711 1.400000e-02 52.8
41 TraesCS7A01G173500 chr1D 100.000 28 0 0 7431 7458 458481564 458481537 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G173500 chr7A 127833468 127840954 7486 True 13826.000000 13826 100.000000 1 7487 1 chr7A.!!$R1 7486
1 TraesCS7A01G173500 chr7D 127130091 127137630 7539 True 1890.666667 5740 92.925333 1 7487 6 chr7D.!!$R1 7486
2 TraesCS7A01G173500 chr7D 496315487 496316057 570 False 560.000000 560 85.026000 1114 1670 1 chr7D.!!$F1 556
3 TraesCS7A01G173500 chr7B 88635496 88643175 7679 True 1951.833333 5734 93.791000 1 7360 6 chr7B.!!$R1 7359
4 TraesCS7A01G173500 chr4B 663745305 663752123 6818 False 597.000000 1044 81.759500 999 6493 6 chr4B.!!$F2 5494
5 TraesCS7A01G173500 chrUn 20484018 20485210 1192 True 589.500000 630 84.980000 1114 2322 2 chrUn.!!$R2 1208
6 TraesCS7A01G173500 chrUn 20434069 20434786 717 True 339.333333 457 93.266667 2320 3032 3 chrUn.!!$R1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 206 0.179111 GATGGACTTCATGCGACGGA 60.179 55.000 0.00 0.00 35.97 4.69 F
940 962 0.248866 CCGGTTTGCACACTTCCAAC 60.249 55.000 2.52 0.00 0.00 3.77 F
1248 1298 0.449388 CGCTGATGCTTTGACTTCCC 59.551 55.000 0.00 0.00 36.97 3.97 F
1661 2525 0.789383 GTAGTTGACAACATGCGCGC 60.789 55.000 27.26 27.26 0.00 6.86 F
2899 4359 0.706433 ATTGCTGGTGGAGACCCAAT 59.294 50.000 0.00 0.00 45.59 3.16 F
3754 5256 0.954452 AGTTTGCTGCTACAGGTTGC 59.046 50.000 0.00 0.00 31.21 4.17 F
4869 6535 3.010420 GGAAGTGCAGGTATTTGTCTCC 58.990 50.000 0.00 0.00 0.00 3.71 F
5382 7060 2.035632 ACGGGGCAAGTTTCAAATCAA 58.964 42.857 0.00 0.00 0.00 2.57 F
5965 7734 0.314935 GGTTGACCACATTGCACCTG 59.685 55.000 0.00 0.00 35.64 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 1291 0.252742 TGGGGAAGAGAGGGGAAGTC 60.253 60.000 0.00 0.0 0.00 3.01 R
2292 3227 1.266989 GCACAGTTGGTTCTAAGGTGC 59.733 52.381 0.00 0.0 42.54 5.01 R
2293 3228 2.549754 CAGCACAGTTGGTTCTAAGGTG 59.450 50.000 0.00 0.0 0.00 4.00 R
3475 4970 3.795623 TTGATAGTAGGTCCTCAACGC 57.204 47.619 0.00 0.0 0.00 4.84 R
4043 5660 1.484240 GGAAGACTAGCAGATGCACCT 59.516 52.381 7.68 0.0 45.16 4.00 R
5050 6717 4.022676 CCTAAAAGCCTCTCTCGATACTCC 60.023 50.000 0.00 0.0 0.00 3.85 R
5946 7715 0.314935 CAGGTGCAATGTGGTCAACC 59.685 55.000 0.00 0.0 0.00 3.77 R
6202 8148 0.599558 CTGTTCAGGTGCAATGTGGG 59.400 55.000 0.00 0.0 0.00 4.61 R
6995 9051 1.556911 TCAGAATGGAGGGAGAAGCAC 59.443 52.381 0.00 0.0 36.16 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.168521 AGTTCGCTTAGCTTCCATGCTA 59.831 45.455 1.76 0.00 43.74 3.49
107 109 3.196901 TGGCACAACGGTTCATCTAGTAT 59.803 43.478 0.00 0.00 31.92 2.12
137 139 7.180322 AGAGATCAAAGAAATGCTAGAGACA 57.820 36.000 0.00 0.00 0.00 3.41
151 153 6.299141 TGCTAGAGACAAAGAAAGATTTGGT 58.701 36.000 0.00 0.00 43.10 3.67
157 159 5.300286 AGACAAAGAAAGATTTGGTGACTGG 59.700 40.000 4.42 0.00 43.10 4.00
165 167 6.923199 AAGATTTGGTGACTGGATGAAAAT 57.077 33.333 0.00 0.00 0.00 1.82
204 206 0.179111 GATGGACTTCATGCGACGGA 60.179 55.000 0.00 0.00 35.97 4.69
235 237 2.562298 GGTTCAAGGTGATGGCAATTGA 59.438 45.455 10.34 0.00 32.96 2.57
248 250 2.615493 GGCAATTGACGAGGAGAGGAAA 60.615 50.000 10.34 0.00 0.00 3.13
255 257 4.341487 TGACGAGGAGAGGAAATTAGTGA 58.659 43.478 0.00 0.00 0.00 3.41
259 261 4.888239 CGAGGAGAGGAAATTAGTGACCTA 59.112 45.833 0.00 0.00 32.53 3.08
364 370 1.131126 CGTGCTCATGGATGTTTCACC 59.869 52.381 0.00 0.00 0.00 4.02
368 374 3.018856 GCTCATGGATGTTTCACCATCA 58.981 45.455 0.00 0.00 43.89 3.07
376 382 4.142534 GGATGTTTCACCATCATGTGACAG 60.143 45.833 0.00 0.00 44.55 3.51
388 394 2.957491 TGTGACAGGGCAAAACAAAG 57.043 45.000 0.00 0.00 0.00 2.77
389 395 2.175202 TGTGACAGGGCAAAACAAAGT 58.825 42.857 0.00 0.00 0.00 2.66
391 397 3.380004 TGTGACAGGGCAAAACAAAGTAG 59.620 43.478 0.00 0.00 0.00 2.57
398 404 6.127196 ACAGGGCAAAACAAAGTAGAATTGAA 60.127 34.615 0.00 0.00 0.00 2.69
401 407 6.536941 GGGCAAAACAAAGTAGAATTGAACAA 59.463 34.615 0.00 0.00 0.00 2.83
414 422 1.079405 GAACAACCTCGCGGGATCA 60.079 57.895 8.08 0.00 38.76 2.92
455 463 5.491070 CCATCCTCGATATTGCCAAGATAA 58.509 41.667 0.00 0.00 0.00 1.75
495 503 1.406539 GTTGCATAGGGGTGCTTGATG 59.593 52.381 0.00 0.00 45.27 3.07
531 539 0.640768 CGCGTTTCTTCTCGATGACC 59.359 55.000 0.00 0.00 0.00 4.02
553 561 5.009010 ACCTTGTTGTCAGATGAACAATGTC 59.991 40.000 9.89 0.00 40.38 3.06
557 565 5.065859 TGTTGTCAGATGAACAATGTCGTTT 59.934 36.000 0.00 0.00 0.00 3.60
774 785 2.766263 TGAGACTCCCAATACGCTGAAT 59.234 45.455 0.00 0.00 0.00 2.57
779 790 6.177610 AGACTCCCAATACGCTGAATTTTTA 58.822 36.000 0.00 0.00 0.00 1.52
780 791 6.657541 AGACTCCCAATACGCTGAATTTTTAA 59.342 34.615 0.00 0.00 0.00 1.52
781 792 6.852664 ACTCCCAATACGCTGAATTTTTAAG 58.147 36.000 0.00 0.00 0.00 1.85
798 812 2.046217 GGTCTGGTTTCGGGAGCC 60.046 66.667 0.00 0.00 0.00 4.70
878 900 5.510861 CCGGACGTTTTCCTATGATCCTATT 60.511 44.000 0.00 0.00 43.25 1.73
905 927 1.233019 CTGCCAGTCAAACAGTCCAG 58.767 55.000 0.00 0.00 0.00 3.86
910 932 3.480470 CCAGTCAAACAGTCCAGACAAT 58.520 45.455 0.00 0.00 33.56 2.71
911 933 3.885297 CCAGTCAAACAGTCCAGACAATT 59.115 43.478 0.00 0.00 33.56 2.32
913 935 4.818546 CAGTCAAACAGTCCAGACAATTCT 59.181 41.667 0.00 0.00 33.56 2.40
925 947 3.432378 AGACAATTCTGACTACTCCGGT 58.568 45.455 0.00 0.00 0.00 5.28
926 948 3.833070 AGACAATTCTGACTACTCCGGTT 59.167 43.478 0.00 0.00 0.00 4.44
939 961 0.394488 TCCGGTTTGCACACTTCCAA 60.394 50.000 0.00 0.00 0.00 3.53
940 962 0.248866 CCGGTTTGCACACTTCCAAC 60.249 55.000 2.52 0.00 0.00 3.77
941 963 0.738389 CGGTTTGCACACTTCCAACT 59.262 50.000 2.52 0.00 0.00 3.16
947 969 1.941812 CACACTTCCAACTCACGCC 59.058 57.895 0.00 0.00 0.00 5.68
1056 1092 2.838225 CCGTACGGCTCCTGGGAT 60.838 66.667 23.44 0.00 0.00 3.85
1062 1098 3.483869 GGCTCCTGGGATTCGCCT 61.484 66.667 10.09 0.00 37.76 5.52
1177 1213 1.982958 AGGAAGGAGGGTAAGCGAAAA 59.017 47.619 0.00 0.00 0.00 2.29
1178 1214 2.082231 GGAAGGAGGGTAAGCGAAAAC 58.918 52.381 0.00 0.00 0.00 2.43
1183 1219 2.225727 GGAGGGTAAGCGAAAACAACAG 59.774 50.000 0.00 0.00 0.00 3.16
1241 1291 2.276244 CGCGACGCTGATGCTTTG 60.276 61.111 19.02 0.00 36.97 2.77
1247 1297 1.129437 GACGCTGATGCTTTGACTTCC 59.871 52.381 0.00 0.00 36.97 3.46
1248 1298 0.449388 CGCTGATGCTTTGACTTCCC 59.551 55.000 0.00 0.00 36.97 3.97
1249 1299 0.813821 GCTGATGCTTTGACTTCCCC 59.186 55.000 0.00 0.00 36.03 4.81
1250 1300 1.615384 GCTGATGCTTTGACTTCCCCT 60.615 52.381 0.00 0.00 36.03 4.79
1437 1496 1.206578 CGCCTGTACAAGCAAACCG 59.793 57.895 16.40 0.00 0.00 4.44
1488 1554 5.589192 AGCTATTGATGATTGCTTGCTTTC 58.411 37.500 0.00 0.00 42.93 2.62
1553 1639 2.284754 TAGCACATTTTGGCACTCCA 57.715 45.000 0.00 0.00 41.55 3.86
1617 2481 7.912056 TTCTTCAGATAAGTGTTCCTTCATG 57.088 36.000 0.00 0.00 34.46 3.07
1633 2497 7.439157 TCCTTCATGTCAGTTTCAAACTATG 57.561 36.000 1.43 3.89 40.46 2.23
1651 2515 5.793817 ACTATGCATGTTCTGTAGTTGACA 58.206 37.500 10.16 0.00 36.35 3.58
1661 2525 0.789383 GTAGTTGACAACATGCGCGC 60.789 55.000 27.26 27.26 0.00 6.86
1686 2550 7.972277 GCTATGTTGGAATATTTATGCATGAGG 59.028 37.037 10.16 0.00 0.00 3.86
1733 2637 5.391736 GGACTCCATACTTGACGGATATACG 60.392 48.000 5.59 5.59 40.31 3.06
1770 2674 6.749118 CCAGAAACATGAACTAAAATAGCTGC 59.251 38.462 0.00 0.00 0.00 5.25
1807 2714 7.333528 TGAACTGTAGCTTCAATTTGACTTT 57.666 32.000 0.00 0.00 0.00 2.66
1808 2715 8.445275 TGAACTGTAGCTTCAATTTGACTTTA 57.555 30.769 0.00 0.00 0.00 1.85
1835 2743 6.715347 AAAGTGGTTCTGCATCTTTTTAGT 57.285 33.333 0.00 0.00 0.00 2.24
1836 2744 6.715347 AAGTGGTTCTGCATCTTTTTAGTT 57.285 33.333 0.00 0.00 0.00 2.24
1867 2775 6.379988 TGTGATTGATTAGAGTAGTGCCACTA 59.620 38.462 0.00 0.00 0.00 2.74
1869 2777 7.383572 GTGATTGATTAGAGTAGTGCCACTATG 59.616 40.741 8.00 0.00 32.65 2.23
1874 2782 3.303938 AGAGTAGTGCCACTATGCATCT 58.696 45.455 8.00 6.89 44.30 2.90
1932 2850 2.224281 TGATGTGTCTTCAAACGGCTCT 60.224 45.455 0.00 0.00 0.00 4.09
2019 2942 0.949105 ATGCGGACGGTGTCTTTGAC 60.949 55.000 0.00 0.00 32.47 3.18
2056 2979 6.153170 TCGTTATGTCACTGTAATGGAAGGTA 59.847 38.462 0.00 0.00 0.00 3.08
2271 3197 7.849804 TGTGCTTAAGATTCTTGAGGATTAC 57.150 36.000 17.12 6.22 0.00 1.89
2417 3352 5.345702 CAAACATGTCATGGGATAAAGCAG 58.654 41.667 17.08 0.00 33.60 4.24
2568 3546 7.701539 TGCAATATACTGAAGGATGTTGTTT 57.298 32.000 12.09 0.00 0.00 2.83
2604 3582 5.998981 AGTGTATTTTTGAATGACCACGGTA 59.001 36.000 0.00 0.00 0.00 4.02
2666 3727 4.606961 TCACGGAAAATGCTTGTCTTTTC 58.393 39.130 0.00 0.00 39.51 2.29
2797 4256 5.121768 AGTTGTATGTTGATTCAGTTACGCC 59.878 40.000 0.00 0.00 0.00 5.68
2899 4359 0.706433 ATTGCTGGTGGAGACCCAAT 59.294 50.000 0.00 0.00 45.59 3.16
3227 4694 9.757227 CATTGAAATAACTTTGTTCCCAAGTTA 57.243 29.630 7.52 7.52 33.17 2.24
3317 4785 7.272978 TCTCTCTGTATTTATTACTTGCACCC 58.727 38.462 0.00 0.00 0.00 4.61
3338 4806 7.603784 GCACCCATCTTTTATCAATTCAGTTTT 59.396 33.333 0.00 0.00 0.00 2.43
3415 4904 5.290885 GGAACAATTGTGACAAACCACTTTC 59.709 40.000 12.82 0.67 37.89 2.62
3754 5256 0.954452 AGTTTGCTGCTACAGGTTGC 59.046 50.000 0.00 0.00 31.21 4.17
3797 5299 8.338072 ACCGTATTTGTTTTATGGTTGTATGA 57.662 30.769 0.00 0.00 35.83 2.15
4043 5660 6.417258 TGCAGATGGATCTTTCTATGTTGAA 58.583 36.000 0.00 0.00 34.22 2.69
4407 6024 3.364460 TGGTCAGAACCCATGGTAATG 57.636 47.619 11.73 4.12 45.83 1.90
4418 6035 6.966534 ACCCATGGTAATGAATCAAATCTC 57.033 37.500 11.73 0.00 35.67 2.75
4420 6037 6.322201 ACCCATGGTAATGAATCAAATCTCAC 59.678 38.462 11.73 0.00 35.67 3.51
4869 6535 3.010420 GGAAGTGCAGGTATTTGTCTCC 58.990 50.000 0.00 0.00 0.00 3.71
4903 6569 8.354711 TCGGCTATCTATCTGATGAGTAAAAT 57.645 34.615 0.00 0.00 36.65 1.82
5050 6717 3.652057 TTTCTTGAAGGCTATGGGAGG 57.348 47.619 0.00 0.00 0.00 4.30
5382 7060 2.035632 ACGGGGCAAGTTTCAAATCAA 58.964 42.857 0.00 0.00 0.00 2.57
5870 7555 8.865090 CAACTATTAGTCCAGATAGTGAGGATT 58.135 37.037 0.00 0.00 38.66 3.01
5940 7709 7.611855 ACATTCTTATCCTTTGAACTGTTAGGG 59.388 37.037 7.74 0.00 0.00 3.53
5944 7713 8.662255 TCTTATCCTTTGAACTGTTAGGGTTTA 58.338 33.333 7.74 0.00 0.00 2.01
5945 7714 8.857694 TTATCCTTTGAACTGTTAGGGTTTAG 57.142 34.615 7.74 0.00 0.00 1.85
5946 7715 5.627135 TCCTTTGAACTGTTAGGGTTTAGG 58.373 41.667 7.74 0.00 0.00 2.69
5947 7716 4.765339 CCTTTGAACTGTTAGGGTTTAGGG 59.235 45.833 0.00 0.00 0.00 3.53
5950 7719 4.721132 TGAACTGTTAGGGTTTAGGGTTG 58.279 43.478 0.00 0.00 0.00 3.77
5952 7721 4.362470 ACTGTTAGGGTTTAGGGTTGAC 57.638 45.455 0.00 0.00 0.00 3.18
5954 7723 3.054576 TGTTAGGGTTTAGGGTTGACCA 58.945 45.455 2.12 0.00 43.89 4.02
5955 7724 3.181441 TGTTAGGGTTTAGGGTTGACCAC 60.181 47.826 2.12 0.00 43.89 4.16
5956 7725 1.525175 AGGGTTTAGGGTTGACCACA 58.475 50.000 2.12 0.00 43.89 4.17
5957 7726 2.070573 AGGGTTTAGGGTTGACCACAT 58.929 47.619 2.12 0.00 43.89 3.21
5960 7729 2.029380 GGTTTAGGGTTGACCACATTGC 60.029 50.000 2.12 0.00 43.89 3.56
5961 7730 2.625790 GTTTAGGGTTGACCACATTGCA 59.374 45.455 2.12 0.00 43.89 4.08
5962 7731 1.904287 TAGGGTTGACCACATTGCAC 58.096 50.000 2.12 0.00 43.89 4.57
5963 7732 0.827507 AGGGTTGACCACATTGCACC 60.828 55.000 2.12 0.00 43.89 5.01
5964 7733 0.827507 GGGTTGACCACATTGCACCT 60.828 55.000 2.12 0.00 39.85 4.00
5965 7734 0.314935 GGTTGACCACATTGCACCTG 59.685 55.000 0.00 0.00 35.64 4.00
5968 7737 1.317613 TGACCACATTGCACCTGAAC 58.682 50.000 2.57 0.00 0.00 3.18
5969 7738 1.317613 GACCACATTGCACCTGAACA 58.682 50.000 2.57 0.00 0.00 3.18
5971 7740 1.321474 CCACATTGCACCTGAACAGT 58.679 50.000 2.57 0.00 0.00 3.55
5973 7742 2.884012 CCACATTGCACCTGAACAGTAA 59.116 45.455 2.57 0.00 0.00 2.24
5974 7743 3.317711 CCACATTGCACCTGAACAGTAAA 59.682 43.478 2.57 0.00 0.00 2.01
5976 7745 3.951037 ACATTGCACCTGAACAGTAAACA 59.049 39.130 2.57 0.00 0.00 2.83
5977 7746 4.036734 ACATTGCACCTGAACAGTAAACAG 59.963 41.667 2.57 0.00 0.00 3.16
5978 7747 1.946768 TGCACCTGAACAGTAAACAGC 59.053 47.619 1.18 0.00 0.00 4.40
5980 7749 2.479837 CACCTGAACAGTAAACAGCGA 58.520 47.619 1.18 0.00 0.00 4.93
5981 7750 3.067106 CACCTGAACAGTAAACAGCGAT 58.933 45.455 1.18 0.00 0.00 4.58
5982 7751 3.067106 ACCTGAACAGTAAACAGCGATG 58.933 45.455 0.00 0.00 0.00 3.84
5983 7752 3.067106 CCTGAACAGTAAACAGCGATGT 58.933 45.455 0.00 0.00 0.00 3.06
5984 7753 4.242475 CCTGAACAGTAAACAGCGATGTA 58.758 43.478 6.79 0.00 0.00 2.29
5985 7754 4.688879 CCTGAACAGTAAACAGCGATGTAA 59.311 41.667 6.79 0.00 0.00 2.41
5986 7755 5.351465 CCTGAACAGTAAACAGCGATGTAAT 59.649 40.000 6.79 1.41 0.00 1.89
5987 7756 6.128282 CCTGAACAGTAAACAGCGATGTAATT 60.128 38.462 6.79 0.47 0.00 1.40
5988 7757 6.598525 TGAACAGTAAACAGCGATGTAATTG 58.401 36.000 6.79 8.34 0.00 2.32
5993 7934 5.703592 AGTAAACAGCGATGTAATTGACCAA 59.296 36.000 6.79 0.00 0.00 3.67
6042 7983 0.518636 CACCAGATCAGGCAACAACG 59.481 55.000 3.64 0.00 41.41 4.10
6166 8110 6.667007 TCGTATCTCGTTATACAAGTCACA 57.333 37.500 9.48 0.00 40.80 3.58
6169 8113 8.829612 TCGTATCTCGTTATACAAGTCACATTA 58.170 33.333 9.48 0.00 40.80 1.90
6197 8143 1.429930 TCTTACACAAGGCACCTCCA 58.570 50.000 0.00 0.00 37.29 3.86
6202 8148 0.883833 CACAAGGCACCTCCAATGTC 59.116 55.000 0.00 0.00 35.70 3.06
6236 8183 4.688879 CCTGAACAGTAAACAGCGATGTAA 59.311 41.667 6.79 0.00 0.00 2.41
6366 8319 1.518903 GCGTTTTCTTGGAGCAGGCT 61.519 55.000 0.00 0.00 0.00 4.58
6582 8544 0.631212 AGGCAGAATAAAGGGGGTGG 59.369 55.000 0.00 0.00 0.00 4.61
6598 8560 1.676014 GGTGGACTTCCTGGATTGTCG 60.676 57.143 18.00 1.75 36.82 4.35
6630 8592 2.527442 ATCGTTTTAAAGAGCTGCGC 57.473 45.000 0.00 0.00 0.00 6.09
6707 8669 4.527038 CCTCTGGACCAAGTTTCAGTAGTA 59.473 45.833 0.00 0.00 0.00 1.82
6718 8680 5.691896 AGTTTCAGTAGTAAAGCAAAGGGT 58.308 37.500 0.00 0.00 0.00 4.34
6776 8738 8.592809 AGACTTTATTTGAGTGAAGAGAGATGT 58.407 33.333 0.00 0.00 0.00 3.06
6793 8755 7.230108 AGAGAGATGTGGCATTATGGTTTATTG 59.770 37.037 0.00 0.00 0.00 1.90
6801 8763 4.734854 GCATTATGGTTTATTGTCACTGCG 59.265 41.667 0.00 0.00 0.00 5.18
6828 8790 3.391506 AGATTCAGGGTTTTGCAAAGC 57.608 42.857 16.83 16.83 0.00 3.51
6975 9031 2.793232 GCGCTATAAAAGTGTAGGACCG 59.207 50.000 0.00 0.00 38.05 4.79
6995 9051 3.125146 CCGTAATGTCACACCATGTTGAG 59.875 47.826 0.00 0.00 0.00 3.02
7141 9197 4.335594 ACTGTTTTGAAGTTGTAGGACTGC 59.664 41.667 0.00 0.00 0.00 4.40
7176 9232 5.153513 TGTTTTCTAAAATTGCAGCGCTAG 58.846 37.500 10.99 5.98 0.00 3.42
7262 9318 7.628769 AGGTGCATTGATTTTTCAAAAGTTT 57.371 28.000 0.00 0.00 32.94 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.374333 TGGAAGCTAAGCGAACTATTTGAAAT 59.626 34.615 0.00 0.00 0.00 2.17
137 139 6.070656 TCATCCAGTCACCAAATCTTTCTTT 58.929 36.000 0.00 0.00 0.00 2.52
151 153 8.488668 TCATATTCTCTGATTTTCATCCAGTCA 58.511 33.333 0.00 0.00 0.00 3.41
165 167 6.100134 TCCATCCACATTGTCATATTCTCTGA 59.900 38.462 0.00 0.00 0.00 3.27
204 206 1.981495 CACCTTGAACCTCTCCTCCTT 59.019 52.381 0.00 0.00 0.00 3.36
235 237 3.447944 GGTCACTAATTTCCTCTCCTCGT 59.552 47.826 0.00 0.00 0.00 4.18
248 250 8.598041 ACAAACTTCTTCTCATAGGTCACTAAT 58.402 33.333 0.00 0.00 31.86 1.73
255 257 5.336849 CGAGGACAAACTTCTTCTCATAGGT 60.337 44.000 0.00 0.00 0.00 3.08
259 261 4.873746 TCGAGGACAAACTTCTTCTCAT 57.126 40.909 0.00 0.00 0.00 2.90
313 319 4.140536 CTCTTGCTCCTTCCTCTTGTTTT 58.859 43.478 0.00 0.00 0.00 2.43
364 370 2.296752 TGTTTTGCCCTGTCACATGATG 59.703 45.455 0.00 0.00 0.00 3.07
368 374 2.765699 ACTTTGTTTTGCCCTGTCACAT 59.234 40.909 0.00 0.00 0.00 3.21
376 382 6.045955 TGTTCAATTCTACTTTGTTTTGCCC 58.954 36.000 0.00 0.00 0.00 5.36
388 394 3.369835 CGCGAGGTTGTTCAATTCTAC 57.630 47.619 0.00 0.00 0.00 2.59
414 422 3.679738 CGGTTTTGGCGTGCCCAT 61.680 61.111 8.69 0.00 44.89 4.00
463 471 7.013846 GCACCCCTATGCAACTTACATTTATTA 59.986 37.037 0.00 0.00 45.39 0.98
464 472 6.183360 GCACCCCTATGCAACTTACATTTATT 60.183 38.462 0.00 0.00 45.39 1.40
495 503 0.305922 GCGAGGCAACATGAGCATAC 59.694 55.000 14.84 2.88 41.41 2.39
531 539 5.142265 CGACATTGTTCATCTGACAACAAG 58.858 41.667 17.12 12.94 43.81 3.16
553 561 9.239002 TGTTAATGAATTGTACCAAAAGAAACG 57.761 29.630 0.00 0.00 0.00 3.60
574 582 8.309656 TGTGGATGCACAAAATCATTATGTTAA 58.690 29.630 18.56 0.00 31.35 2.01
575 583 7.834803 TGTGGATGCACAAAATCATTATGTTA 58.165 30.769 18.56 0.00 31.35 2.41
633 644 9.743057 ACTTCATTTCAACAAATTAATTCGACA 57.257 25.926 0.10 0.00 28.97 4.35
740 751 3.738282 GGGAGTCTCATTTCGAATCGATG 59.262 47.826 6.06 2.72 35.23 3.84
774 785 4.139038 CTCCCGAAACCAGACCTTAAAAA 58.861 43.478 0.00 0.00 0.00 1.94
779 790 1.375326 GCTCCCGAAACCAGACCTT 59.625 57.895 0.00 0.00 0.00 3.50
780 791 2.593956 GGCTCCCGAAACCAGACCT 61.594 63.158 0.00 0.00 0.00 3.85
781 792 2.046217 GGCTCCCGAAACCAGACC 60.046 66.667 0.00 0.00 0.00 3.85
798 812 4.693566 TGTATAGTTGACTTTTGAAGCCCG 59.306 41.667 0.00 0.00 0.00 6.13
905 927 3.870633 ACCGGAGTAGTCAGAATTGTC 57.129 47.619 9.46 0.00 0.00 3.18
910 932 1.689813 TGCAAACCGGAGTAGTCAGAA 59.310 47.619 9.46 0.00 0.00 3.02
911 933 1.000506 GTGCAAACCGGAGTAGTCAGA 59.999 52.381 9.46 0.00 0.00 3.27
913 935 0.753867 TGTGCAAACCGGAGTAGTCA 59.246 50.000 9.46 0.00 0.00 3.41
914 936 1.145803 GTGTGCAAACCGGAGTAGTC 58.854 55.000 9.46 0.00 0.00 2.59
915 937 0.756903 AGTGTGCAAACCGGAGTAGT 59.243 50.000 9.46 0.00 0.00 2.73
916 938 1.798813 GAAGTGTGCAAACCGGAGTAG 59.201 52.381 9.46 0.00 0.00 2.57
917 939 1.541670 GGAAGTGTGCAAACCGGAGTA 60.542 52.381 9.46 0.00 0.00 2.59
918 940 0.818040 GGAAGTGTGCAAACCGGAGT 60.818 55.000 9.46 0.00 0.00 3.85
919 941 0.817634 TGGAAGTGTGCAAACCGGAG 60.818 55.000 9.46 0.00 0.00 4.63
920 942 0.394488 TTGGAAGTGTGCAAACCGGA 60.394 50.000 9.46 0.00 31.30 5.14
921 943 0.248866 GTTGGAAGTGTGCAAACCGG 60.249 55.000 2.53 0.00 36.77 5.28
922 944 0.738389 AGTTGGAAGTGTGCAAACCG 59.262 50.000 2.53 0.00 36.77 4.44
923 945 1.748493 TGAGTTGGAAGTGTGCAAACC 59.252 47.619 2.53 0.00 36.77 3.27
924 946 2.791158 CGTGAGTTGGAAGTGTGCAAAC 60.791 50.000 0.00 0.00 36.77 2.93
925 947 1.400142 CGTGAGTTGGAAGTGTGCAAA 59.600 47.619 0.00 0.00 36.77 3.68
926 948 1.013596 CGTGAGTTGGAAGTGTGCAA 58.986 50.000 0.00 0.00 31.86 4.08
941 963 0.321919 ACTGGTAGTACTCGGCGTGA 60.322 55.000 16.57 0.00 0.00 4.35
947 969 0.377554 CGGAGCACTGGTAGTACTCG 59.622 60.000 0.00 0.00 39.07 4.18
1047 1083 1.274728 CTGATAGGCGAATCCCAGGAG 59.725 57.143 0.00 0.00 34.51 3.69
1177 1213 1.705997 GGGGTGAGTGGGTCTGTTGT 61.706 60.000 0.00 0.00 0.00 3.32
1178 1214 1.073199 GGGGTGAGTGGGTCTGTTG 59.927 63.158 0.00 0.00 0.00 3.33
1183 1219 1.990614 GAGAGGGGGTGAGTGGGTC 60.991 68.421 0.00 0.00 0.00 4.46
1241 1291 0.252742 TGGGGAAGAGAGGGGAAGTC 60.253 60.000 0.00 0.00 0.00 3.01
1247 1297 2.726351 GCGTCTGGGGAAGAGAGGG 61.726 68.421 0.00 0.00 34.84 4.30
1248 1298 2.896443 GCGTCTGGGGAAGAGAGG 59.104 66.667 0.00 0.00 34.84 3.69
1249 1299 2.492090 CGCGTCTGGGGAAGAGAG 59.508 66.667 0.00 0.00 34.84 3.20
1250 1300 3.760035 GCGCGTCTGGGGAAGAGA 61.760 66.667 8.43 0.00 34.84 3.10
1437 1496 3.358076 CTTCCTCCGCACCTCCGAC 62.358 68.421 0.00 0.00 0.00 4.79
1488 1554 6.971756 CCATGAAGATATATCGTAGCACTGAG 59.028 42.308 7.08 0.00 0.00 3.35
1553 1639 4.300189 TCTACTGCAAAACAAAATGCGT 57.700 36.364 0.00 0.00 45.47 5.24
1617 2481 6.580041 CAGAACATGCATAGTTTGAAACTGAC 59.420 38.462 20.06 9.77 42.84 3.51
1633 2497 4.811555 TGTTGTCAACTACAGAACATGC 57.188 40.909 16.45 0.00 39.87 4.06
1651 2515 1.024046 TCCAACATAGCGCGCATGTT 61.024 50.000 34.93 34.93 45.23 2.71
1661 2525 8.464404 CCCTCATGCATAAATATTCCAACATAG 58.536 37.037 0.00 0.00 0.00 2.23
1686 2550 6.549364 TCCCCAACATGATGTAAAATCATACC 59.451 38.462 0.00 0.00 36.69 2.73
1733 2637 3.648339 TGTTTCTGGAAATGCTGCTTC 57.352 42.857 0.00 0.00 32.36 3.86
1867 2775 8.641498 TTTTCTTAAAAGGAGAAGAGATGCAT 57.359 30.769 0.00 0.00 34.84 3.96
1953 2876 1.968493 GGTGTCAGAGGTAGTGGTGAA 59.032 52.381 0.00 0.00 0.00 3.18
2019 2942 4.330074 GTGACATAACGATTGAAGTGAGGG 59.670 45.833 0.00 0.00 0.00 4.30
2064 2987 6.375174 GCACCATTGACATGCTATATATGGAA 59.625 38.462 13.48 0.00 35.98 3.53
2271 3197 8.192774 AGGTGCACATTGAGAACATTATTTATG 58.807 33.333 20.43 0.00 40.26 1.90
2292 3227 1.266989 GCACAGTTGGTTCTAAGGTGC 59.733 52.381 0.00 0.00 42.54 5.01
2293 3228 2.549754 CAGCACAGTTGGTTCTAAGGTG 59.450 50.000 0.00 0.00 0.00 4.00
2417 3352 6.601332 TGGAGAAATATCCAACCCATAGTTC 58.399 40.000 0.00 0.00 46.45 3.01
2604 3582 4.569943 AGTGATCTAAAATGTGCAGTCGT 58.430 39.130 0.00 0.00 0.00 4.34
2749 4206 8.877779 ACTGAATCATTCATCTTTTACTTCTCG 58.122 33.333 0.00 0.00 39.30 4.04
2899 4359 7.005296 GGGTTCAGTAGGAGATTCTACTATCA 58.995 42.308 8.88 0.00 45.68 2.15
3338 4806 7.261325 TGCTGCAGTTATTTGTTAAAAACAGA 58.739 30.769 16.64 0.00 43.27 3.41
3475 4970 3.795623 TTGATAGTAGGTCCTCAACGC 57.204 47.619 0.00 0.00 0.00 4.84
3754 5256 3.498397 ACGGTCAATACTGAAAACTGCAG 59.502 43.478 13.48 13.48 39.26 4.41
3831 5333 4.660303 ACATATGACTTCCCATTCTGCCTA 59.340 41.667 10.38 0.00 0.00 3.93
4043 5660 1.484240 GGAAGACTAGCAGATGCACCT 59.516 52.381 7.68 0.00 45.16 4.00
4418 6035 6.940298 TGGTACCTTCAAGAAAAAGATAGGTG 59.060 38.462 14.36 0.00 36.11 4.00
4420 6037 7.996098 TTGGTACCTTCAAGAAAAAGATAGG 57.004 36.000 14.36 0.00 0.00 2.57
4869 6535 7.441890 TCAGATAGATAGCCGAGAAAGTTAG 57.558 40.000 0.00 0.00 0.00 2.34
4903 6569 7.384115 GTGCAAGTATATAGAACGCAGGATTTA 59.616 37.037 0.00 0.00 0.00 1.40
5050 6717 4.022676 CCTAAAAGCCTCTCTCGATACTCC 60.023 50.000 0.00 0.00 0.00 3.85
5382 7060 5.528690 GCAGCAAAAAGGAGAGGAAAAATTT 59.471 36.000 0.00 0.00 0.00 1.82
5860 7545 5.419542 CAGAATTCCGTTCAATCCTCACTA 58.580 41.667 0.65 0.00 39.39 2.74
5870 7555 3.973206 TTCCTAGCAGAATTCCGTTCA 57.027 42.857 0.65 0.00 39.39 3.18
5940 7709 2.625790 TGCAATGTGGTCAACCCTAAAC 59.374 45.455 0.00 0.00 34.29 2.01
5944 7713 0.827507 GGTGCAATGTGGTCAACCCT 60.828 55.000 0.00 0.00 34.29 4.34
5945 7714 0.827507 AGGTGCAATGTGGTCAACCC 60.828 55.000 0.00 0.00 34.29 4.11
5946 7715 0.314935 CAGGTGCAATGTGGTCAACC 59.685 55.000 0.00 0.00 0.00 3.77
5947 7716 1.317613 TCAGGTGCAATGTGGTCAAC 58.682 50.000 0.00 0.00 0.00 3.18
5950 7719 1.267806 CTGTTCAGGTGCAATGTGGTC 59.732 52.381 0.00 0.00 0.00 4.02
5952 7721 1.321474 ACTGTTCAGGTGCAATGTGG 58.679 50.000 4.82 0.00 0.00 4.17
5954 7723 3.951037 TGTTTACTGTTCAGGTGCAATGT 59.049 39.130 4.82 0.00 0.00 2.71
5955 7724 4.539870 CTGTTTACTGTTCAGGTGCAATG 58.460 43.478 4.82 0.00 0.00 2.82
5956 7725 3.004734 GCTGTTTACTGTTCAGGTGCAAT 59.995 43.478 4.82 0.00 0.00 3.56
5957 7726 2.357637 GCTGTTTACTGTTCAGGTGCAA 59.642 45.455 4.82 0.00 0.00 4.08
5960 7729 2.479837 TCGCTGTTTACTGTTCAGGTG 58.520 47.619 4.82 0.00 0.00 4.00
5961 7730 2.902705 TCGCTGTTTACTGTTCAGGT 57.097 45.000 4.82 0.00 0.00 4.00
5962 7731 3.067106 ACATCGCTGTTTACTGTTCAGG 58.933 45.455 4.82 2.04 28.70 3.86
5963 7732 5.839262 TTACATCGCTGTTTACTGTTCAG 57.161 39.130 0.00 0.00 36.79 3.02
5964 7733 6.425417 TCAATTACATCGCTGTTTACTGTTCA 59.575 34.615 0.00 0.00 36.79 3.18
5965 7734 6.736853 GTCAATTACATCGCTGTTTACTGTTC 59.263 38.462 0.00 0.00 36.79 3.18
5968 7737 5.121611 TGGTCAATTACATCGCTGTTTACTG 59.878 40.000 0.00 0.00 36.79 2.74
5969 7738 5.242434 TGGTCAATTACATCGCTGTTTACT 58.758 37.500 0.00 0.00 36.79 2.24
5971 7740 5.703592 AGTTGGTCAATTACATCGCTGTTTA 59.296 36.000 0.00 0.00 36.79 2.01
5973 7742 4.072131 AGTTGGTCAATTACATCGCTGTT 58.928 39.130 0.00 0.00 36.79 3.16
5974 7743 3.674997 AGTTGGTCAATTACATCGCTGT 58.325 40.909 0.00 0.00 39.49 4.40
5976 7745 5.121768 GTGTAAGTTGGTCAATTACATCGCT 59.878 40.000 14.98 0.00 40.44 4.93
5977 7746 5.121768 AGTGTAAGTTGGTCAATTACATCGC 59.878 40.000 14.98 8.15 40.44 4.58
5978 7747 6.721571 AGTGTAAGTTGGTCAATTACATCG 57.278 37.500 14.98 0.00 40.44 3.84
5980 7749 8.458573 TCAAAGTGTAAGTTGGTCAATTACAT 57.541 30.769 14.98 5.23 40.44 2.29
5981 7750 7.867305 TCAAAGTGTAAGTTGGTCAATTACA 57.133 32.000 11.17 11.17 37.14 2.41
5982 7751 8.564574 TCATCAAAGTGTAAGTTGGTCAATTAC 58.435 33.333 0.00 0.00 0.00 1.89
5983 7752 8.684386 TCATCAAAGTGTAAGTTGGTCAATTA 57.316 30.769 0.00 0.00 0.00 1.40
5984 7753 7.581213 TCATCAAAGTGTAAGTTGGTCAATT 57.419 32.000 0.00 0.00 0.00 2.32
5985 7754 7.667219 AGATCATCAAAGTGTAAGTTGGTCAAT 59.333 33.333 0.00 0.00 0.00 2.57
5986 7755 6.998074 AGATCATCAAAGTGTAAGTTGGTCAA 59.002 34.615 0.00 0.00 0.00 3.18
5987 7756 6.533730 AGATCATCAAAGTGTAAGTTGGTCA 58.466 36.000 0.00 0.00 0.00 4.02
5988 7757 7.173218 TGAAGATCATCAAAGTGTAAGTTGGTC 59.827 37.037 0.00 0.00 0.00 4.02
5993 7934 6.773638 ACCTGAAGATCATCAAAGTGTAAGT 58.226 36.000 1.81 0.00 0.00 2.24
6042 7983 9.220767 CCTTTGTCCTTTATAGCCTTGTATATC 57.779 37.037 0.00 0.00 0.00 1.63
6126 8067 9.499686 CGAGATACGAAAACGATAATAAATGTG 57.500 33.333 0.00 0.00 45.77 3.21
6169 8113 7.962441 AGGTGCCTTGTGTAAGAATTAAAAAT 58.038 30.769 0.00 0.00 35.92 1.82
6202 8148 0.599558 CTGTTCAGGTGCAATGTGGG 59.400 55.000 0.00 0.00 0.00 4.61
6297 8250 9.942850 TGTGATATTTGAGTTCATTTCTACTGA 57.057 29.630 0.00 0.00 0.00 3.41
6582 8544 2.029838 ATGCGACAATCCAGGAAGTC 57.970 50.000 13.17 13.17 0.00 3.01
6598 8560 8.736751 TCTTTAAAACGATTACAAGGAAATGC 57.263 30.769 0.00 0.00 0.00 3.56
6630 8592 3.988379 ATGCTTAAACGGCATACATGG 57.012 42.857 0.00 0.00 46.81 3.66
6718 8680 7.333921 CACAATATTTTGGGAAATGCTAAGCAA 59.666 33.333 0.00 0.00 39.36 3.91
6776 8738 5.394005 GCAGTGACAATAAACCATAATGCCA 60.394 40.000 0.00 0.00 0.00 4.92
6801 8763 4.038642 TGCAAAACCCTGAATCTAAACACC 59.961 41.667 0.00 0.00 0.00 4.16
6975 9031 4.613622 GCACTCAACATGGTGTGACATTAC 60.614 45.833 19.19 0.00 36.03 1.89
6995 9051 1.556911 TCAGAATGGAGGGAGAAGCAC 59.443 52.381 0.00 0.00 36.16 4.40
7141 9197 2.452006 AGAAAACAAACGTGCACTCG 57.548 45.000 16.19 5.07 0.00 4.18
7176 9232 6.653320 TGTGACATTATGGTCCTACACTTTTC 59.347 38.462 0.00 0.00 36.97 2.29
7262 9318 9.880157 ATAAACTTAGTCAAGCGTAAGGATTTA 57.120 29.630 0.00 0.00 34.94 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.