Multiple sequence alignment - TraesCS7A01G173400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G173400 chr7A 100.000 6350 0 0 1 6350 127829987 127823638 0.000000e+00 11727.0
1 TraesCS7A01G173400 chr7A 93.130 131 9 0 6058 6188 99804484 99804354 6.500000e-45 193.0
2 TraesCS7A01G173400 chr7A 83.333 102 13 4 1197 1295 386588937 386588837 2.440000e-14 91.6
3 TraesCS7A01G173400 chr7D 94.603 3743 134 32 560 4259 127024305 127020588 0.000000e+00 5731.0
4 TraesCS7A01G173400 chr7D 96.445 1322 46 1 4257 5578 127020541 127019221 0.000000e+00 2180.0
5 TraesCS7A01G173400 chr7D 94.118 391 19 4 1 390 127024682 127024295 5.480000e-165 592.0
6 TraesCS7A01G173400 chr7D 81.860 656 80 26 5714 6346 127018979 127018340 3.390000e-142 516.0
7 TraesCS7A01G173400 chr7D 93.605 172 11 0 390 561 528035306 528035135 2.270000e-64 257.0
8 TraesCS7A01G173400 chr7D 90.278 144 13 1 6049 6191 309743979 309744122 3.020000e-43 187.0
9 TraesCS7A01G173400 chr7D 91.791 134 10 1 6058 6191 548775016 548775148 1.090000e-42 185.0
10 TraesCS7A01G173400 chr7D 91.538 130 9 2 6058 6187 412726711 412726584 1.820000e-40 178.0
11 TraesCS7A01G173400 chr7D 86.087 115 5 2 5580 5694 127019187 127019084 5.200000e-21 113.0
12 TraesCS7A01G173400 chr7D 86.792 53 2 5 274 321 70695328 70695276 3.000000e-03 54.7
13 TraesCS7A01G173400 chr7B 92.875 2779 103 41 693 3420 88580136 88577402 0.000000e+00 3947.0
14 TraesCS7A01G173400 chr7B 95.011 1323 53 2 4257 5579 88576769 88575460 0.000000e+00 2065.0
15 TraesCS7A01G173400 chr7B 97.244 508 12 2 3733 4239 88577339 88576833 0.000000e+00 859.0
16 TraesCS7A01G173400 chr7B 92.073 328 19 6 5714 6035 88575198 88574872 7.500000e-124 455.0
17 TraesCS7A01G173400 chr7B 91.765 170 14 0 389 558 726902561 726902730 2.960000e-58 237.0
18 TraesCS7A01G173400 chr7B 86.400 125 6 3 5580 5693 88575427 88575303 6.680000e-25 126.0
19 TraesCS7A01G173400 chr2A 91.034 435 36 3 1652 2085 62532187 62531755 9.170000e-163 584.0
20 TraesCS7A01G173400 chr2B 90.465 409 37 2 1678 2085 662553813 662553406 7.240000e-149 538.0
21 TraesCS7A01G173400 chr3B 92.722 316 21 2 5248 5562 151836337 151836651 7.500000e-124 455.0
22 TraesCS7A01G173400 chr3B 91.603 131 11 0 6057 6187 598987616 598987746 1.410000e-41 182.0
23 TraesCS7A01G173400 chr4D 93.678 174 11 0 389 562 498765969 498765796 1.760000e-65 261.0
24 TraesCS7A01G173400 chr3D 93.642 173 11 0 386 558 527504573 527504401 6.320000e-65 259.0
25 TraesCS7A01G173400 chr3D 93.382 136 8 1 6054 6189 577791565 577791699 3.880000e-47 200.0
26 TraesCS7A01G173400 chr4A 92.398 171 11 2 389 558 171201397 171201566 6.360000e-60 243.0
27 TraesCS7A01G173400 chr4A 91.406 128 10 1 6061 6187 403270852 403270725 2.350000e-39 174.0
28 TraesCS7A01G173400 chr6A 92.353 170 11 2 390 558 191222312 191222144 2.290000e-59 241.0
29 TraesCS7A01G173400 chr1A 92.353 170 11 2 390 558 518659600 518659768 2.290000e-59 241.0
30 TraesCS7A01G173400 chr5B 91.765 170 12 2 390 558 232213741 232213909 1.060000e-57 235.0
31 TraesCS7A01G173400 chr5B 93.525 139 8 1 6049 6187 208583411 208583548 8.340000e-49 206.0
32 TraesCS7A01G173400 chr4B 91.765 170 11 2 389 558 147754584 147754750 3.830000e-57 233.0
33 TraesCS7A01G173400 chr1B 81.022 274 34 13 2806 3063 69881647 69881918 1.080000e-47 202.0
34 TraesCS7A01G173400 chr3A 90.076 131 13 0 6057 6187 735150075 735149945 3.040000e-38 171.0
35 TraesCS7A01G173400 chr1D 85.556 90 9 1 2807 2892 49597110 49597199 2.440000e-14 91.6
36 TraesCS7A01G173400 chr6D 86.667 60 5 3 265 321 473350091 473350032 5.310000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G173400 chr7A 127823638 127829987 6349 True 11727.0 11727 100.0000 1 6350 1 chr7A.!!$R2 6349
1 TraesCS7A01G173400 chr7D 127018340 127024682 6342 True 1826.4 5731 90.6226 1 6346 5 chr7D.!!$R4 6345
2 TraesCS7A01G173400 chr7B 88574872 88580136 5264 True 1490.4 3947 92.7206 693 6035 5 chr7B.!!$R1 5342

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 532 0.034059 GGATCGTCCATGAATCGGCT 59.966 55.000 0.00 0.0 36.28 5.52 F
1316 1370 0.098376 CTTGCTCAGATTCTTGCGGC 59.902 55.000 0.00 0.0 0.00 6.53 F
1475 1529 0.324943 TTCTTTCGCTTCCTCTGGGG 59.675 55.000 0.00 0.0 0.00 4.96 F
2154 2223 0.527565 GCGCATCACACTGGGAAATT 59.472 50.000 0.30 0.0 0.00 1.82 F
3464 3540 1.066573 GCTTCTAGCTCAAGCACTCCA 60.067 52.381 20.44 0.0 44.87 3.86 F
4613 4766 0.250338 ACGCTTTGTGGGTCTTCCTC 60.250 55.000 0.00 0.0 37.23 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2316 2386 0.593128 AGCAAACCATTGTCGCACTC 59.407 50.000 0.00 0.0 38.85 3.51 R
2731 2804 1.628846 GTTCCCTCCTGCTTCCTACAA 59.371 52.381 0.00 0.0 0.00 2.41 R
3464 3540 0.663153 GTGGAGAAAGCGTTGCAGTT 59.337 50.000 0.00 0.0 0.00 3.16 R
4143 4244 2.348666 GCTTGATCGCGTATTCAACTGT 59.651 45.455 5.77 0.0 0.00 3.55 R
4885 5038 1.248486 GCAGGTCCCTTTCCTTTGAC 58.752 55.000 0.00 0.0 32.37 3.18 R
6155 6447 0.108585 GCAGTCCACCAACTCCTTCA 59.891 55.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.855513 TTGCATGTGCTTTGTGCTTC 58.144 45.000 6.55 0.00 43.37 3.86
53 54 2.836479 TGTGCTTCGCATCATCATTG 57.164 45.000 0.00 0.00 41.91 2.82
80 81 4.578928 TGGTGGAAAACTAGTGCTTCTTTC 59.421 41.667 14.46 11.40 0.00 2.62
97 98 6.290904 GCTTCTTTCCAAAACGTAAAAAGTCG 60.291 38.462 0.00 0.00 0.00 4.18
98 99 5.029654 TCTTTCCAAAACGTAAAAAGTCGC 58.970 37.500 0.00 0.00 0.00 5.19
101 102 2.784928 CCAAAACGTAAAAAGTCGCCAC 59.215 45.455 0.00 0.00 0.00 5.01
156 157 6.612247 TTCTACATGTGTAACCACTTTGTG 57.388 37.500 9.11 0.00 42.34 3.33
166 167 7.090173 GTGTAACCACTTTGTGATGCAATATT 58.910 34.615 0.00 0.00 38.61 1.28
192 193 5.703592 TCTTAGATTTGTGTGTTTACCGCAT 59.296 36.000 0.00 0.00 35.67 4.73
197 198 6.651643 AGATTTGTGTGTTTACCGCATAGTTA 59.348 34.615 0.00 0.00 35.67 2.24
277 279 9.338622 TCGTTTCTTTATTCTTCTCCTTTTCTT 57.661 29.630 0.00 0.00 0.00 2.52
359 361 5.057149 CCAGAGTTATAAGGGCATGTACAC 58.943 45.833 0.00 0.00 0.00 2.90
378 380 5.968528 ACACTAGTTGAGACACCTTCTAG 57.031 43.478 0.00 0.00 33.22 2.43
390 392 4.759782 ACACCTTCTAGGAATGTGATTCG 58.240 43.478 17.67 0.00 37.67 3.34
391 393 4.122776 CACCTTCTAGGAATGTGATTCGG 58.877 47.826 9.08 0.00 37.67 4.30
392 394 4.030913 ACCTTCTAGGAATGTGATTCGGA 58.969 43.478 0.00 0.00 37.67 4.55
393 395 4.469945 ACCTTCTAGGAATGTGATTCGGAA 59.530 41.667 0.00 0.00 37.67 4.30
394 396 5.131142 ACCTTCTAGGAATGTGATTCGGAAT 59.869 40.000 2.19 2.19 37.67 3.01
395 397 6.058183 CCTTCTAGGAATGTGATTCGGAATT 58.942 40.000 4.47 0.00 37.67 2.17
397 399 4.816385 TCTAGGAATGTGATTCGGAATTGC 59.184 41.667 4.47 2.09 40.17 3.56
398 400 3.624777 AGGAATGTGATTCGGAATTGCT 58.375 40.909 4.47 0.00 40.17 3.91
399 401 4.019174 AGGAATGTGATTCGGAATTGCTT 58.981 39.130 4.47 0.00 40.17 3.91
400 402 4.096984 AGGAATGTGATTCGGAATTGCTTC 59.903 41.667 4.47 6.29 40.17 3.86
401 403 4.142403 GGAATGTGATTCGGAATTGCTTCA 60.142 41.667 4.47 0.00 40.17 3.02
402 404 3.829886 TGTGATTCGGAATTGCTTCAC 57.170 42.857 12.30 12.30 35.27 3.18
403 405 3.145286 TGTGATTCGGAATTGCTTCACA 58.855 40.909 16.16 16.16 40.64 3.58
404 406 3.058293 TGTGATTCGGAATTGCTTCACAC 60.058 43.478 16.16 12.36 38.71 3.82
405 407 3.058293 GTGATTCGGAATTGCTTCACACA 60.058 43.478 13.69 0.00 34.92 3.72
406 408 3.058293 TGATTCGGAATTGCTTCACACAC 60.058 43.478 4.47 0.00 32.70 3.82
407 409 0.865111 TCGGAATTGCTTCACACACG 59.135 50.000 0.00 0.00 32.70 4.49
408 410 0.865111 CGGAATTGCTTCACACACGA 59.135 50.000 0.00 0.00 32.70 4.35
409 411 1.464608 CGGAATTGCTTCACACACGAT 59.535 47.619 0.00 0.00 32.70 3.73
410 412 2.670905 CGGAATTGCTTCACACACGATA 59.329 45.455 0.00 0.00 32.70 2.92
411 413 3.483574 CGGAATTGCTTCACACACGATAC 60.484 47.826 0.00 0.00 32.70 2.24
412 414 3.435327 GGAATTGCTTCACACACGATACA 59.565 43.478 0.00 0.00 32.70 2.29
413 415 4.436050 GGAATTGCTTCACACACGATACAG 60.436 45.833 0.00 0.00 32.70 2.74
414 416 1.428448 TGCTTCACACACGATACAGC 58.572 50.000 0.00 0.00 0.00 4.40
415 417 1.270041 TGCTTCACACACGATACAGCA 60.270 47.619 0.00 0.00 33.46 4.41
416 418 2.002586 GCTTCACACACGATACAGCAT 58.997 47.619 0.00 0.00 0.00 3.79
417 419 2.222886 GCTTCACACACGATACAGCATG 60.223 50.000 0.00 0.00 46.00 4.06
418 420 3.253230 CTTCACACACGATACAGCATGA 58.747 45.455 0.00 0.00 39.69 3.07
419 421 3.311486 TCACACACGATACAGCATGAA 57.689 42.857 0.00 0.00 39.69 2.57
420 422 2.993220 TCACACACGATACAGCATGAAC 59.007 45.455 0.00 0.00 39.69 3.18
421 423 1.992667 ACACACGATACAGCATGAACG 59.007 47.619 0.00 0.00 39.69 3.95
422 424 2.258755 CACACGATACAGCATGAACGA 58.741 47.619 0.00 0.00 39.69 3.85
423 425 2.860136 CACACGATACAGCATGAACGAT 59.140 45.455 0.00 0.00 39.69 3.73
424 426 3.060940 CACACGATACAGCATGAACGATC 60.061 47.826 0.00 0.00 39.69 3.69
425 427 3.181486 ACACGATACAGCATGAACGATCT 60.181 43.478 0.00 0.00 39.69 2.75
426 428 3.181178 CACGATACAGCATGAACGATCTG 59.819 47.826 0.00 0.00 39.69 2.90
427 429 2.154580 CGATACAGCATGAACGATCTGC 59.845 50.000 0.00 8.39 39.69 4.26
428 430 1.559831 TACAGCATGAACGATCTGCG 58.440 50.000 0.00 8.38 43.06 5.18
429 431 0.108662 ACAGCATGAACGATCTGCGA 60.109 50.000 0.00 0.00 40.31 5.10
430 432 1.001624 CAGCATGAACGATCTGCGAA 58.998 50.000 0.00 0.00 40.31 4.70
431 433 1.002366 AGCATGAACGATCTGCGAAC 58.998 50.000 0.00 0.00 44.57 3.95
432 434 0.314578 GCATGAACGATCTGCGAACG 60.315 55.000 0.00 6.66 44.57 3.95
433 435 1.268265 CATGAACGATCTGCGAACGA 58.732 50.000 13.18 0.00 44.57 3.85
434 436 1.854743 CATGAACGATCTGCGAACGAT 59.145 47.619 13.18 3.66 44.57 3.73
435 437 1.268265 TGAACGATCTGCGAACGATG 58.732 50.000 13.18 0.00 44.57 3.84
436 438 0.043822 GAACGATCTGCGAACGATGC 60.044 55.000 13.18 0.00 44.57 3.91
437 439 1.742900 AACGATCTGCGAACGATGCG 61.743 55.000 13.18 0.00 44.57 4.73
438 440 2.224217 CGATCTGCGAACGATGCGT 61.224 57.895 0.00 0.00 44.57 5.24
447 449 4.904466 ACGATGCGTTCCCTACAC 57.096 55.556 0.00 0.00 36.35 2.90
448 450 1.969085 ACGATGCGTTCCCTACACA 59.031 52.632 0.00 0.00 36.35 3.72
449 451 0.535335 ACGATGCGTTCCCTACACAT 59.465 50.000 0.00 0.00 36.35 3.21
450 452 1.209128 CGATGCGTTCCCTACACATC 58.791 55.000 0.00 0.00 41.04 3.06
451 453 1.470805 CGATGCGTTCCCTACACATCA 60.471 52.381 0.00 0.00 43.40 3.07
452 454 2.803133 CGATGCGTTCCCTACACATCAT 60.803 50.000 0.00 0.00 43.40 2.45
453 455 2.309528 TGCGTTCCCTACACATCATC 57.690 50.000 0.00 0.00 0.00 2.92
454 456 1.831106 TGCGTTCCCTACACATCATCT 59.169 47.619 0.00 0.00 0.00 2.90
455 457 3.028130 TGCGTTCCCTACACATCATCTA 58.972 45.455 0.00 0.00 0.00 1.98
456 458 3.449377 TGCGTTCCCTACACATCATCTAA 59.551 43.478 0.00 0.00 0.00 2.10
457 459 4.081365 TGCGTTCCCTACACATCATCTAAA 60.081 41.667 0.00 0.00 0.00 1.85
458 460 4.873827 GCGTTCCCTACACATCATCTAAAA 59.126 41.667 0.00 0.00 0.00 1.52
459 461 5.353123 GCGTTCCCTACACATCATCTAAAAA 59.647 40.000 0.00 0.00 0.00 1.94
480 482 4.574599 AAATAAATCAATCGCCTCCTGC 57.425 40.909 0.00 0.00 0.00 4.85
491 493 4.662961 CTCCTGCGTGCACGGACA 62.663 66.667 37.47 26.63 40.23 4.02
492 494 3.939837 CTCCTGCGTGCACGGACAT 62.940 63.158 37.47 0.00 40.23 3.06
493 495 3.792047 CCTGCGTGCACGGACATG 61.792 66.667 37.47 23.95 40.23 3.21
494 496 3.792047 CTGCGTGCACGGACATGG 61.792 66.667 37.47 21.03 40.23 3.66
495 497 4.617520 TGCGTGCACGGACATGGT 62.618 61.111 37.47 0.00 40.23 3.55
496 498 3.353836 GCGTGCACGGACATGGTT 61.354 61.111 37.47 0.00 40.23 3.67
497 499 2.555782 CGTGCACGGACATGGTTG 59.444 61.111 31.15 0.00 35.37 3.77
498 500 2.953821 GTGCACGGACATGGTTGG 59.046 61.111 0.00 0.00 0.00 3.77
499 501 1.599518 GTGCACGGACATGGTTGGA 60.600 57.895 0.00 0.00 0.00 3.53
500 502 1.302431 TGCACGGACATGGTTGGAG 60.302 57.895 0.00 0.00 0.00 3.86
501 503 2.690778 GCACGGACATGGTTGGAGC 61.691 63.158 0.00 0.00 0.00 4.70
502 504 1.003355 CACGGACATGGTTGGAGCT 60.003 57.895 0.00 0.00 0.00 4.09
503 505 1.003355 ACGGACATGGTTGGAGCTG 60.003 57.895 0.00 0.00 0.00 4.24
504 506 2.401766 CGGACATGGTTGGAGCTGC 61.402 63.158 0.00 0.00 0.00 5.25
505 507 2.048603 GGACATGGTTGGAGCTGCC 61.049 63.158 1.53 0.00 37.10 4.85
513 515 2.934932 TGGAGCTGCCACATGGGA 60.935 61.111 1.53 0.00 43.33 4.37
514 516 2.311070 TGGAGCTGCCACATGGGAT 61.311 57.895 1.53 0.00 43.33 3.85
515 517 1.527844 GGAGCTGCCACATGGGATC 60.528 63.158 0.00 0.00 40.01 3.36
516 518 1.890979 GAGCTGCCACATGGGATCG 60.891 63.158 0.00 0.00 40.01 3.69
517 519 2.124570 GCTGCCACATGGGATCGT 60.125 61.111 0.00 0.00 40.01 3.73
518 520 2.182842 GCTGCCACATGGGATCGTC 61.183 63.158 0.00 0.00 40.01 4.20
519 521 1.524621 CTGCCACATGGGATCGTCC 60.525 63.158 0.00 0.00 40.01 4.79
520 522 2.256072 CTGCCACATGGGATCGTCCA 62.256 60.000 0.00 0.00 38.64 4.02
527 529 2.462456 ATGGGATCGTCCATGAATCG 57.538 50.000 2.95 0.00 45.13 3.34
528 530 0.392706 TGGGATCGTCCATGAATCGG 59.607 55.000 0.00 0.00 38.64 4.18
529 531 0.951040 GGGATCGTCCATGAATCGGC 60.951 60.000 0.00 0.00 38.64 5.54
530 532 0.034059 GGATCGTCCATGAATCGGCT 59.966 55.000 0.00 0.00 36.28 5.52
531 533 1.143305 GATCGTCCATGAATCGGCTG 58.857 55.000 0.00 0.00 0.00 4.85
532 534 0.882042 ATCGTCCATGAATCGGCTGC 60.882 55.000 0.00 0.00 0.00 5.25
533 535 1.522355 CGTCCATGAATCGGCTGCT 60.522 57.895 0.00 0.00 0.00 4.24
534 536 1.769098 CGTCCATGAATCGGCTGCTG 61.769 60.000 0.95 0.95 0.00 4.41
535 537 1.153107 TCCATGAATCGGCTGCTGG 60.153 57.895 8.89 1.89 0.00 4.85
536 538 2.191513 CCATGAATCGGCTGCTGGG 61.192 63.158 8.89 0.00 0.00 4.45
537 539 1.452651 CATGAATCGGCTGCTGGGT 60.453 57.895 8.89 0.00 0.00 4.51
538 540 1.033746 CATGAATCGGCTGCTGGGTT 61.034 55.000 8.89 4.24 0.00 4.11
539 541 1.033746 ATGAATCGGCTGCTGGGTTG 61.034 55.000 8.89 0.00 0.00 3.77
540 542 1.675641 GAATCGGCTGCTGGGTTGT 60.676 57.895 8.89 0.00 0.00 3.32
541 543 1.648467 GAATCGGCTGCTGGGTTGTC 61.648 60.000 8.89 0.00 0.00 3.18
542 544 3.958147 ATCGGCTGCTGGGTTGTCG 62.958 63.158 8.89 0.00 0.00 4.35
543 545 4.988598 CGGCTGCTGGGTTGTCGT 62.989 66.667 0.00 0.00 0.00 4.34
544 546 3.357079 GGCTGCTGGGTTGTCGTG 61.357 66.667 0.00 0.00 0.00 4.35
545 547 2.591715 GCTGCTGGGTTGTCGTGT 60.592 61.111 0.00 0.00 0.00 4.49
546 548 2.896801 GCTGCTGGGTTGTCGTGTG 61.897 63.158 0.00 0.00 0.00 3.82
547 549 1.523711 CTGCTGGGTTGTCGTGTGT 60.524 57.895 0.00 0.00 0.00 3.72
548 550 0.249699 CTGCTGGGTTGTCGTGTGTA 60.250 55.000 0.00 0.00 0.00 2.90
549 551 0.394938 TGCTGGGTTGTCGTGTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
550 552 1.619332 TGCTGGGTTGTCGTGTGTATA 59.381 47.619 0.00 0.00 0.00 1.47
551 553 2.268298 GCTGGGTTGTCGTGTGTATAG 58.732 52.381 0.00 0.00 0.00 1.31
552 554 2.268298 CTGGGTTGTCGTGTGTATAGC 58.732 52.381 0.00 0.00 0.00 2.97
553 555 1.619332 TGGGTTGTCGTGTGTATAGCA 59.381 47.619 0.00 0.00 0.00 3.49
554 556 2.268298 GGGTTGTCGTGTGTATAGCAG 58.732 52.381 0.00 0.00 0.00 4.24
555 557 1.659098 GGTTGTCGTGTGTATAGCAGC 59.341 52.381 0.00 0.00 0.00 5.25
556 558 1.320555 GTTGTCGTGTGTATAGCAGCG 59.679 52.381 0.00 0.00 0.00 5.18
557 559 0.800683 TGTCGTGTGTATAGCAGCGC 60.801 55.000 0.00 0.00 0.00 5.92
558 560 0.525668 GTCGTGTGTATAGCAGCGCT 60.526 55.000 2.64 2.64 43.41 5.92
559 561 0.525455 TCGTGTGTATAGCAGCGCTG 60.525 55.000 32.83 32.83 40.10 5.18
560 562 0.525455 CGTGTGTATAGCAGCGCTGA 60.525 55.000 40.21 21.71 40.10 4.26
561 563 1.640428 GTGTGTATAGCAGCGCTGAA 58.360 50.000 40.21 26.62 40.10 3.02
562 564 2.205074 GTGTGTATAGCAGCGCTGAAT 58.795 47.619 40.21 30.63 40.10 2.57
563 565 2.033407 GTGTGTATAGCAGCGCTGAATG 60.033 50.000 40.21 16.28 40.10 2.67
564 566 2.205074 GTGTATAGCAGCGCTGAATGT 58.795 47.619 40.21 25.93 40.10 2.71
565 567 2.033407 GTGTATAGCAGCGCTGAATGTG 60.033 50.000 40.21 15.04 40.10 3.21
566 568 2.159114 TGTATAGCAGCGCTGAATGTGA 60.159 45.455 40.21 17.40 40.10 3.58
567 569 2.251409 ATAGCAGCGCTGAATGTGAT 57.749 45.000 40.21 18.79 40.10 3.06
568 570 2.028420 TAGCAGCGCTGAATGTGATT 57.972 45.000 40.21 15.63 40.10 2.57
569 571 0.731417 AGCAGCGCTGAATGTGATTC 59.269 50.000 40.21 18.87 37.57 2.52
570 572 0.248377 GCAGCGCTGAATGTGATTCC 60.248 55.000 40.21 14.87 38.50 3.01
571 573 1.089112 CAGCGCTGAATGTGATTCCA 58.911 50.000 33.66 0.00 38.50 3.53
572 574 1.089920 AGCGCTGAATGTGATTCCAC 58.910 50.000 10.39 0.00 43.46 4.02
573 575 0.247814 GCGCTGAATGTGATTCCACG 60.248 55.000 0.00 0.00 46.06 4.94
574 576 1.358877 CGCTGAATGTGATTCCACGA 58.641 50.000 0.00 0.00 46.06 4.35
575 577 1.061131 CGCTGAATGTGATTCCACGAC 59.939 52.381 0.00 0.00 46.06 4.34
576 578 1.061131 GCTGAATGTGATTCCACGACG 59.939 52.381 0.00 0.00 46.06 5.12
577 579 1.660607 CTGAATGTGATTCCACGACGG 59.339 52.381 0.00 0.00 46.06 4.79
578 580 0.373716 GAATGTGATTCCACGACGGC 59.626 55.000 0.00 0.00 46.06 5.68
604 606 1.147376 TCCGGGAAGGTGTTGTGTG 59.853 57.895 0.00 0.00 41.99 3.82
623 625 5.221521 TGTGTGCATCTCTCAAAAGTAGACT 60.222 40.000 0.00 0.00 0.00 3.24
686 688 0.113190 AAGCCCACTTTCCCCTCAAG 59.887 55.000 0.00 0.00 29.41 3.02
922 942 3.706373 GAGGTGAGGGCTTGCCGA 61.706 66.667 5.49 0.00 0.00 5.54
1238 1274 0.810031 TAATCGGCTCGCTTCTTGCC 60.810 55.000 0.00 0.00 42.94 4.52
1245 1281 4.445545 CGCTTCTTGCCGCGGTTC 62.446 66.667 28.70 11.89 45.17 3.62
1316 1370 0.098376 CTTGCTCAGATTCTTGCGGC 59.902 55.000 0.00 0.00 0.00 6.53
1317 1371 1.638388 TTGCTCAGATTCTTGCGGCG 61.638 55.000 0.51 0.51 0.00 6.46
1332 1386 3.009714 GCGGTTCCTTCTCCCCCT 61.010 66.667 0.00 0.00 0.00 4.79
1333 1387 3.032667 GCGGTTCCTTCTCCCCCTC 62.033 68.421 0.00 0.00 0.00 4.30
1334 1388 1.306226 CGGTTCCTTCTCCCCCTCT 60.306 63.158 0.00 0.00 0.00 3.69
1335 1389 0.910088 CGGTTCCTTCTCCCCCTCTT 60.910 60.000 0.00 0.00 0.00 2.85
1336 1390 0.913205 GGTTCCTTCTCCCCCTCTTC 59.087 60.000 0.00 0.00 0.00 2.87
1337 1391 0.913205 GTTCCTTCTCCCCCTCTTCC 59.087 60.000 0.00 0.00 0.00 3.46
1338 1392 0.617820 TTCCTTCTCCCCCTCTTCCG 60.618 60.000 0.00 0.00 0.00 4.30
1339 1393 2.066999 CCTTCTCCCCCTCTTCCGG 61.067 68.421 0.00 0.00 0.00 5.14
1340 1394 2.040606 TTCTCCCCCTCTTCCGGG 59.959 66.667 0.00 0.00 44.27 5.73
1347 1401 3.330720 CCTCTTCCGGGGCCACTT 61.331 66.667 1.96 0.00 0.00 3.16
1348 1402 2.045926 CTCTTCCGGGGCCACTTG 60.046 66.667 1.96 0.00 0.00 3.16
1349 1403 3.628646 CTCTTCCGGGGCCACTTGG 62.629 68.421 1.96 0.00 38.53 3.61
1429 1483 3.134081 TCCTCTGGGGACGTAATTGATTC 59.866 47.826 0.00 0.00 39.58 2.52
1475 1529 0.324943 TTCTTTCGCTTCCTCTGGGG 59.675 55.000 0.00 0.00 0.00 4.96
1644 1704 1.024579 CGTGGACACTGTATTGGGCC 61.025 60.000 0.00 0.00 0.00 5.80
1694 1754 1.269723 GCTTAACAGGTTGGTCCTTGC 59.730 52.381 0.00 0.00 45.67 4.01
1901 1962 5.519206 GCTATTGGAGTCAGTTACCTTTACG 59.481 44.000 0.00 0.00 0.00 3.18
2002 2063 6.058905 CGTATAGTGCGAAAAAGATCAATCG 58.941 40.000 0.00 0.27 38.28 3.34
2014 2075 6.683974 AAAGATCAATCGTAACTGGAATGG 57.316 37.500 0.00 0.00 0.00 3.16
2050 2111 6.899393 AGTTTTATCCAATGCTGTTCTTGA 57.101 33.333 0.00 0.00 0.00 3.02
2082 2143 5.623956 TTTGGTTCAGTCCTGTAAGAGAA 57.376 39.130 0.00 0.00 34.07 2.87
2122 2183 8.322091 TCTAATTCTTTTCCTGGAAGTTCCTAG 58.678 37.037 22.41 16.51 37.46 3.02
2123 2184 6.704056 ATTCTTTTCCTGGAAGTTCCTAGA 57.296 37.500 22.41 15.48 37.46 2.43
2124 2185 6.509523 TTCTTTTCCTGGAAGTTCCTAGAA 57.490 37.500 22.41 19.86 37.46 2.10
2125 2186 6.115448 TCTTTTCCTGGAAGTTCCTAGAAG 57.885 41.667 22.41 16.42 37.46 2.85
2134 2203 2.339769 AGTTCCTAGAAGTGGCAAGGT 58.660 47.619 2.29 0.00 0.00 3.50
2145 2214 3.615536 GGCAAGGTGCGCATCACAC 62.616 63.158 24.93 10.89 46.21 3.82
2154 2223 0.527565 GCGCATCACACTGGGAAATT 59.472 50.000 0.30 0.00 0.00 1.82
2160 2229 6.735694 GCGCATCACACTGGGAAATTATATTT 60.736 38.462 0.30 0.00 0.00 1.40
2214 2283 7.423844 TCTGATCCTCACTGCTTAGATTTTA 57.576 36.000 0.00 0.00 0.00 1.52
2221 2290 9.373450 TCCTCACTGCTTAGATTTTATAGAGAT 57.627 33.333 0.00 0.00 0.00 2.75
2223 2292 9.979578 CTCACTGCTTAGATTTTATAGAGATGT 57.020 33.333 0.00 0.00 0.00 3.06
2290 2360 1.360393 ACAGAAGGCCCAGTCCCAAA 61.360 55.000 0.00 0.00 0.00 3.28
2313 2383 4.700213 ACTTTGTTGACAGTTTAGCAGTGT 59.300 37.500 0.00 0.00 42.25 3.55
2315 2385 2.354510 TGTTGACAGTTTAGCAGTGTGC 59.645 45.455 0.00 0.00 45.46 4.57
2357 2427 4.235079 TGGTTGAAAGGATATGGACAGG 57.765 45.455 0.00 0.00 0.00 4.00
2440 2513 5.774690 AGTTTGTTGGCCTGATATTTTCTGA 59.225 36.000 3.32 0.00 0.00 3.27
2467 2540 6.157994 AGCAGTATTTATCTTCCTGGTTGGTA 59.842 38.462 0.00 0.00 37.07 3.25
2750 2823 1.628846 GTTGTAGGAAGCAGGAGGGAA 59.371 52.381 0.00 0.00 0.00 3.97
2927 3000 4.963276 TCCAATTTCGATGCAGGTTTAG 57.037 40.909 0.00 0.00 0.00 1.85
2955 3028 3.463048 ACAGATCTTCTTTTGGGGCAT 57.537 42.857 0.00 0.00 0.00 4.40
3312 3388 7.164122 CCCAGTATTCTGCAGTTGATATACAT 58.836 38.462 14.67 3.77 40.09 2.29
3464 3540 1.066573 GCTTCTAGCTCAAGCACTCCA 60.067 52.381 20.44 0.00 44.87 3.86
3513 3589 7.337942 AGGAAGATGGTTAGTAAATGCTTTCTG 59.662 37.037 0.00 0.00 0.00 3.02
3631 3707 5.220586 CCGCTTAATCGAACATCTGCTTTTA 60.221 40.000 0.00 0.00 0.00 1.52
3717 3793 4.081862 CGTTGTCCCTTCATAGGTCACTTA 60.082 45.833 0.00 0.00 40.19 2.24
3786 3886 7.503521 TTTGTCTTGATTGTATGCTGTGTTA 57.496 32.000 0.00 0.00 0.00 2.41
4140 4241 5.784578 TGCTCAGAGAACACTACTTTACA 57.215 39.130 0.00 0.00 0.00 2.41
4143 4244 7.892609 TGCTCAGAGAACACTACTTTACATTA 58.107 34.615 0.00 0.00 0.00 1.90
4494 4647 8.749841 ATAATATCTGAGCAACTGATTACGTC 57.250 34.615 0.00 0.00 38.03 4.34
4527 4680 8.726988 GTGGTTTCTGTTGCAATACTCTAATTA 58.273 33.333 0.59 0.00 0.00 1.40
4564 4717 5.149973 TGAAACCAATAACATTGCAGCAT 57.850 34.783 0.00 0.00 0.00 3.79
4581 4734 6.738114 TGCAGCATTATTTGTATTAGAAGGC 58.262 36.000 0.00 0.00 0.00 4.35
4584 4737 7.540055 GCAGCATTATTTGTATTAGAAGGCATC 59.460 37.037 0.00 0.00 29.64 3.91
4613 4766 0.250338 ACGCTTTGTGGGTCTTCCTC 60.250 55.000 0.00 0.00 37.23 3.71
4641 4794 4.100479 CCAGCACTGGCATTTGGA 57.900 55.556 3.23 0.00 44.73 3.53
4650 4803 4.019174 CACTGGCATTTGGAAACCTATCT 58.981 43.478 0.00 0.00 0.00 1.98
4703 4856 1.088340 CGGGAGCTGATGCAGAACAG 61.088 60.000 12.09 12.09 42.74 3.16
4774 4927 1.768684 GCAACTCACTCCACAGGGGA 61.769 60.000 0.00 0.00 45.89 4.81
4849 5002 4.842531 TGGAAGGTAGAGATGCATGAAA 57.157 40.909 2.46 0.00 0.00 2.69
4885 5038 2.187685 TGCTGCCCGCAGTAGATG 59.812 61.111 17.51 0.00 45.47 2.90
4926 5079 1.486211 TAGGAGTAGGCCAGCAAGAC 58.514 55.000 5.01 0.00 0.00 3.01
5004 5157 3.888930 GGTTGTTGATCAAGAGGGAAACA 59.111 43.478 8.80 0.00 36.66 2.83
5099 5252 3.149196 GTGAAGGGATCAAAGTTGCTCA 58.851 45.455 0.00 0.00 40.50 4.26
5124 5277 5.011738 GGCCTATCAACCTACTAGCATTGTA 59.988 44.000 0.00 0.00 0.00 2.41
5225 5378 3.193479 ACGACATTACTGCATCTCTCACA 59.807 43.478 0.00 0.00 0.00 3.58
5368 5521 1.202976 AGCTGGTTGCCAAGATCAGTT 60.203 47.619 0.00 0.00 44.23 3.16
5430 5583 9.856162 ACTACTCTATAGGAAGTTAGAAAGAGG 57.144 37.037 0.00 0.00 34.81 3.69
5538 5691 2.877097 TAGCATTCTTTCAGTGCCCA 57.123 45.000 0.00 0.00 39.62 5.36
5557 5710 2.510664 TGTGGGGAAAAACACAGGC 58.489 52.632 0.00 0.00 42.20 4.85
5673 5869 6.737720 AGGCACTGATTCTTGTATGAGATA 57.262 37.500 0.00 0.00 37.18 1.98
5694 5890 7.518188 AGATAGAAGAAAGGGTTTCAGTTTCA 58.482 34.615 2.44 0.00 42.10 2.69
5695 5891 5.836821 AGAAGAAAGGGTTTCAGTTTCAC 57.163 39.130 2.44 0.00 42.10 3.18
5698 5894 5.582689 AGAAAGGGTTTCAGTTTCACTTG 57.417 39.130 2.44 0.00 42.10 3.16
5699 5895 4.402474 AGAAAGGGTTTCAGTTTCACTTGG 59.598 41.667 2.44 0.00 42.10 3.61
5700 5896 2.031870 AGGGTTTCAGTTTCACTTGGC 58.968 47.619 0.00 0.00 0.00 4.52
5701 5897 1.269051 GGGTTTCAGTTTCACTTGGCG 60.269 52.381 0.00 0.00 0.00 5.69
5702 5898 1.404035 GGTTTCAGTTTCACTTGGCGT 59.596 47.619 0.00 0.00 0.00 5.68
5704 5900 0.380378 TTCAGTTTCACTTGGCGTGC 59.620 50.000 0.00 0.00 43.46 5.34
5705 5901 0.463654 TCAGTTTCACTTGGCGTGCT 60.464 50.000 0.00 0.00 43.46 4.40
5706 5902 0.317269 CAGTTTCACTTGGCGTGCTG 60.317 55.000 0.00 0.00 43.46 4.41
5707 5903 1.658409 GTTTCACTTGGCGTGCTGC 60.658 57.895 0.00 0.00 43.46 5.25
5751 6032 7.860613 TCATGCTACATTTGTTTGGATATACG 58.139 34.615 0.00 0.00 0.00 3.06
5847 6130 5.743422 GCCCTTCTACAGTCCAATATCCTTC 60.743 48.000 0.00 0.00 0.00 3.46
5852 6135 8.603898 TTCTACAGTCCAATATCCTTCTTACA 57.396 34.615 0.00 0.00 0.00 2.41
5858 6143 9.793252 CAGTCCAATATCCTTCTTACATTTTTG 57.207 33.333 0.00 0.00 0.00 2.44
5890 6176 5.334724 GAAGGCTTCCATGACATGAAAAT 57.665 39.130 17.24 0.00 0.00 1.82
5897 6183 7.137426 GCTTCCATGACATGAAAATATCAGTC 58.863 38.462 17.24 0.00 42.53 3.51
5898 6184 7.201758 GCTTCCATGACATGAAAATATCAGTCA 60.202 37.037 17.24 0.00 43.65 3.41
5917 6205 5.050091 CAGTCACACAAGTTGAGGATTACAC 60.050 44.000 10.54 0.00 0.00 2.90
5918 6206 4.814234 GTCACACAAGTTGAGGATTACACA 59.186 41.667 10.54 0.00 0.00 3.72
5919 6207 5.295787 GTCACACAAGTTGAGGATTACACAA 59.704 40.000 10.54 0.00 0.00 3.33
5920 6208 5.295787 TCACACAAGTTGAGGATTACACAAC 59.704 40.000 10.54 1.30 42.51 3.32
5973 6262 6.490040 AGCAGAAAATTGAAAAGCTACAGGTA 59.510 34.615 0.00 0.00 0.00 3.08
6037 6329 4.099266 TCCTTTACATGCAGCTGTTTGTTT 59.901 37.500 22.86 7.42 0.00 2.83
6040 6332 5.715429 TTACATGCAGCTGTTTGTTTTTG 57.285 34.783 22.86 9.71 0.00 2.44
6042 6334 1.367659 TGCAGCTGTTTGTTTTTGGC 58.632 45.000 16.64 0.00 0.00 4.52
6050 6342 4.190772 CTGTTTGTTTTTGGCATGGAAGT 58.809 39.130 0.00 0.00 0.00 3.01
6058 6350 6.152661 TGTTTTTGGCATGGAAGTATCTTAGG 59.847 38.462 0.00 0.00 0.00 2.69
6061 6353 2.417719 GCATGGAAGTATCTTAGGCCG 58.582 52.381 0.00 0.00 0.00 6.13
6062 6354 2.417719 CATGGAAGTATCTTAGGCCGC 58.582 52.381 0.00 0.00 0.00 6.53
6067 6359 0.030369 AGTATCTTAGGCCGCGTTCG 59.970 55.000 4.92 0.00 0.00 3.95
6077 6369 3.475774 CGCGTTCGGTTTCCCTCG 61.476 66.667 0.00 0.00 0.00 4.63
6078 6370 3.116531 GCGTTCGGTTTCCCTCGG 61.117 66.667 0.00 0.00 0.00 4.63
6083 6375 3.702048 CGGTTTCCCTCGGCTCCA 61.702 66.667 0.00 0.00 0.00 3.86
6084 6376 2.998949 GGTTTCCCTCGGCTCCAT 59.001 61.111 0.00 0.00 0.00 3.41
6085 6377 1.452108 GGTTTCCCTCGGCTCCATG 60.452 63.158 0.00 0.00 0.00 3.66
6086 6378 1.452108 GTTTCCCTCGGCTCCATGG 60.452 63.158 4.97 4.97 0.00 3.66
6087 6379 3.344137 TTTCCCTCGGCTCCATGGC 62.344 63.158 6.96 0.00 37.94 4.40
6088 6380 4.804420 TCCCTCGGCTCCATGGCT 62.804 66.667 6.96 0.00 39.32 4.75
6090 6382 4.247380 CCTCGGCTCCATGGCTCC 62.247 72.222 6.96 9.45 39.32 4.70
6091 6383 4.598894 CTCGGCTCCATGGCTCCG 62.599 72.222 28.01 28.01 42.96 4.63
6093 6385 4.473520 CGGCTCCATGGCTCCGTT 62.474 66.667 26.52 0.00 39.32 4.44
6095 6387 2.514824 GCTCCATGGCTCCGTTCC 60.515 66.667 6.96 0.00 0.00 3.62
6096 6388 2.190578 CTCCATGGCTCCGTTCCC 59.809 66.667 6.96 0.00 0.00 3.97
6097 6389 3.740128 CTCCATGGCTCCGTTCCCG 62.740 68.421 6.96 0.00 0.00 5.14
6107 6399 3.446570 CGTTCCCGGAGCGGTAGT 61.447 66.667 15.41 0.00 46.80 2.73
6109 6401 1.656818 CGTTCCCGGAGCGGTAGTTA 61.657 60.000 15.41 0.00 46.80 2.24
6110 6402 0.532115 GTTCCCGGAGCGGTAGTTAA 59.468 55.000 0.73 0.00 46.80 2.01
6111 6403 1.066929 GTTCCCGGAGCGGTAGTTAAA 60.067 52.381 0.73 0.00 46.80 1.52
6112 6404 1.265236 TCCCGGAGCGGTAGTTAAAA 58.735 50.000 0.73 0.00 46.80 1.52
6114 6406 2.159057 TCCCGGAGCGGTAGTTAAAATC 60.159 50.000 0.73 0.00 46.80 2.17
6115 6407 2.207590 CCGGAGCGGTAGTTAAAATCC 58.792 52.381 0.00 0.00 42.73 3.01
6116 6408 2.159000 CCGGAGCGGTAGTTAAAATCCT 60.159 50.000 0.00 0.00 42.73 3.24
6117 6409 3.528532 CGGAGCGGTAGTTAAAATCCTT 58.471 45.455 0.00 0.00 0.00 3.36
6118 6410 3.308866 CGGAGCGGTAGTTAAAATCCTTG 59.691 47.826 0.00 0.00 0.00 3.61
6119 6411 3.626217 GGAGCGGTAGTTAAAATCCTTGG 59.374 47.826 0.00 0.00 0.00 3.61
6120 6412 4.510571 GAGCGGTAGTTAAAATCCTTGGA 58.489 43.478 0.00 0.00 0.00 3.53
6121 6413 4.514401 AGCGGTAGTTAAAATCCTTGGAG 58.486 43.478 0.00 0.00 0.00 3.86
6122 6414 3.064958 GCGGTAGTTAAAATCCTTGGAGC 59.935 47.826 0.00 0.00 0.00 4.70
6124 6416 4.595986 GGTAGTTAAAATCCTTGGAGCCA 58.404 43.478 0.00 0.00 0.00 4.75
6126 6418 3.092301 AGTTAAAATCCTTGGAGCCAGC 58.908 45.455 0.00 0.00 0.00 4.85
6127 6419 2.825532 GTTAAAATCCTTGGAGCCAGCA 59.174 45.455 0.00 0.00 0.00 4.41
6130 6422 1.260544 AATCCTTGGAGCCAGCAAAC 58.739 50.000 0.00 0.00 0.00 2.93
6132 6424 0.538057 TCCTTGGAGCCAGCAAACAG 60.538 55.000 0.00 0.00 0.00 3.16
6133 6425 1.288127 CTTGGAGCCAGCAAACAGC 59.712 57.895 0.00 0.00 46.19 4.40
6142 6434 2.778679 GCAAACAGCTACTCCGCG 59.221 61.111 0.00 0.00 41.15 6.46
6143 6435 2.740714 GCAAACAGCTACTCCGCGG 61.741 63.158 22.12 22.12 41.15 6.46
6144 6436 1.080093 CAAACAGCTACTCCGCGGA 60.080 57.895 29.03 29.03 34.40 5.54
6145 6437 0.460284 CAAACAGCTACTCCGCGGAT 60.460 55.000 31.19 20.63 34.40 4.18
6146 6438 0.249398 AAACAGCTACTCCGCGGATT 59.751 50.000 31.19 26.39 34.40 3.01
6147 6439 0.179108 AACAGCTACTCCGCGGATTC 60.179 55.000 31.19 17.26 34.40 2.52
6148 6440 1.038130 ACAGCTACTCCGCGGATTCT 61.038 55.000 31.19 19.24 34.40 2.40
6149 6441 0.952280 CAGCTACTCCGCGGATTCTA 59.048 55.000 31.19 16.79 34.40 2.10
6151 6443 1.202782 AGCTACTCCGCGGATTCTAGA 60.203 52.381 31.19 6.93 34.40 2.43
6152 6444 1.607628 GCTACTCCGCGGATTCTAGAA 59.392 52.381 31.19 7.82 0.00 2.10
6153 6445 2.229302 GCTACTCCGCGGATTCTAGAAT 59.771 50.000 31.19 17.96 0.00 2.40
6154 6446 3.305471 GCTACTCCGCGGATTCTAGAATT 60.305 47.826 31.19 3.15 0.00 2.17
6155 6447 3.821421 ACTCCGCGGATTCTAGAATTT 57.179 42.857 31.19 0.00 0.00 1.82
6158 6450 4.119862 CTCCGCGGATTCTAGAATTTGAA 58.880 43.478 31.19 0.00 0.00 2.69
6159 6451 4.119862 TCCGCGGATTCTAGAATTTGAAG 58.880 43.478 27.28 8.92 0.00 3.02
6160 6452 3.248602 CCGCGGATTCTAGAATTTGAAGG 59.751 47.826 24.07 14.20 0.00 3.46
6161 6453 4.119862 CGCGGATTCTAGAATTTGAAGGA 58.880 43.478 18.88 0.00 0.00 3.36
6162 6454 4.210120 CGCGGATTCTAGAATTTGAAGGAG 59.790 45.833 18.88 6.33 0.00 3.69
6163 6455 5.119694 GCGGATTCTAGAATTTGAAGGAGT 58.880 41.667 18.88 0.00 0.00 3.85
6165 6457 6.457528 GCGGATTCTAGAATTTGAAGGAGTTG 60.458 42.308 18.88 1.13 0.00 3.16
6167 6459 6.887002 GGATTCTAGAATTTGAAGGAGTTGGT 59.113 38.462 18.88 0.00 0.00 3.67
6171 6463 4.145052 AGAATTTGAAGGAGTTGGTGGAC 58.855 43.478 0.00 0.00 0.00 4.02
6172 6464 3.884037 ATTTGAAGGAGTTGGTGGACT 57.116 42.857 0.00 0.00 0.00 3.85
6174 6466 0.108585 TGAAGGAGTTGGTGGACTGC 59.891 55.000 0.00 0.00 38.16 4.40
6175 6467 0.606673 GAAGGAGTTGGTGGACTGCC 60.607 60.000 0.00 0.00 38.60 4.85
6178 6470 1.070786 GAGTTGGTGGACTGCCGAA 59.929 57.895 0.00 0.00 36.79 4.30
6179 6471 1.227853 AGTTGGTGGACTGCCGAAC 60.228 57.895 0.00 0.00 36.79 3.95
6180 6472 2.280524 TTGGTGGACTGCCGAACG 60.281 61.111 0.00 0.00 36.79 3.95
6181 6473 4.980805 TGGTGGACTGCCGAACGC 62.981 66.667 0.00 0.00 36.79 4.84
6191 6491 1.735559 GCCGAACGCGTCCTTAGTT 60.736 57.895 14.44 0.00 35.23 2.24
6197 6497 2.243602 ACGCGTCCTTAGTTTGGAAA 57.756 45.000 5.58 0.00 35.10 3.13
6215 6515 4.710375 TGGAAAAGTAGAGCTCGAATAGGT 59.290 41.667 8.37 0.00 39.11 3.08
6223 6523 4.688021 AGAGCTCGAATAGGTGAATTCAC 58.312 43.478 27.16 27.16 45.72 3.18
6238 6538 7.864307 GTGAATTCACCTTCTTGAATCTTTG 57.136 36.000 25.26 0.00 43.95 2.77
6243 6543 7.496529 TTCACCTTCTTGAATCTTTGTAGTG 57.503 36.000 0.00 0.00 30.29 2.74
6296 6596 4.225208 GCTTGCTTGTTCTCTGAATTGAC 58.775 43.478 0.00 0.00 0.00 3.18
6299 6599 3.251729 TGCTTGTTCTCTGAATTGACAGC 59.748 43.478 0.00 0.00 37.75 4.40
6302 6602 3.405831 TGTTCTCTGAATTGACAGCTGG 58.594 45.455 19.93 0.00 37.75 4.85
6318 6618 3.256879 CAGCTGGTACTACGGATGATGAT 59.743 47.826 5.57 0.00 35.20 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.276678 ACATGCAATATTTGATGAGTCGGG 59.723 41.667 9.49 0.00 0.00 5.14
7 8 5.209977 CACATGCAATATTTGATGAGTCGG 58.790 41.667 9.49 0.00 0.00 4.79
16 17 4.643953 GCACAAAGCACATGCAATATTTG 58.356 39.130 6.64 10.11 45.16 2.32
41 42 2.287368 CCACCATGACAATGATGATGCG 60.287 50.000 0.00 0.00 35.67 4.73
53 54 3.412386 AGCACTAGTTTTCCACCATGAC 58.588 45.455 0.00 0.00 0.00 3.06
80 81 2.784928 GTGGCGACTTTTTACGTTTTGG 59.215 45.455 0.00 0.00 0.00 3.28
166 167 6.874664 TGCGGTAAACACACAAATCTAAGATA 59.125 34.615 0.00 0.00 0.00 1.98
177 178 6.167685 AGAATAACTATGCGGTAAACACACA 58.832 36.000 0.00 0.00 0.00 3.72
277 279 9.784531 AGTATTTGAATGTTGAGAGAAAGAAGA 57.215 29.630 0.00 0.00 0.00 2.87
359 361 6.153680 ACATTCCTAGAAGGTGTCTCAACTAG 59.846 42.308 0.00 0.00 37.84 2.57
378 380 4.142403 TGAAGCAATTCCGAATCACATTCC 60.142 41.667 0.00 0.00 35.89 3.01
390 392 3.435327 TGTATCGTGTGTGAAGCAATTCC 59.565 43.478 0.00 0.00 0.00 3.01
391 393 4.641954 CTGTATCGTGTGTGAAGCAATTC 58.358 43.478 0.00 0.00 0.00 2.17
392 394 3.120199 GCTGTATCGTGTGTGAAGCAATT 60.120 43.478 0.00 0.00 0.00 2.32
393 395 2.416547 GCTGTATCGTGTGTGAAGCAAT 59.583 45.455 0.00 0.00 0.00 3.56
394 396 1.798223 GCTGTATCGTGTGTGAAGCAA 59.202 47.619 0.00 0.00 0.00 3.91
395 397 1.270041 TGCTGTATCGTGTGTGAAGCA 60.270 47.619 0.00 0.00 36.88 3.91
397 399 3.253230 TCATGCTGTATCGTGTGTGAAG 58.747 45.455 0.00 0.00 0.00 3.02
398 400 3.311486 TCATGCTGTATCGTGTGTGAA 57.689 42.857 0.00 0.00 0.00 3.18
399 401 2.993220 GTTCATGCTGTATCGTGTGTGA 59.007 45.455 0.00 0.00 0.00 3.58
400 402 2.222574 CGTTCATGCTGTATCGTGTGTG 60.223 50.000 0.00 0.00 0.00 3.82
401 403 1.992667 CGTTCATGCTGTATCGTGTGT 59.007 47.619 0.00 0.00 0.00 3.72
402 404 2.258755 TCGTTCATGCTGTATCGTGTG 58.741 47.619 0.00 0.00 0.00 3.82
403 405 2.647529 TCGTTCATGCTGTATCGTGT 57.352 45.000 0.00 0.00 0.00 4.49
404 406 3.181178 CAGATCGTTCATGCTGTATCGTG 59.819 47.826 0.00 0.00 0.00 4.35
405 407 3.375642 CAGATCGTTCATGCTGTATCGT 58.624 45.455 0.00 0.00 0.00 3.73
406 408 2.154580 GCAGATCGTTCATGCTGTATCG 59.845 50.000 9.34 0.00 37.00 2.92
407 409 2.154580 CGCAGATCGTTCATGCTGTATC 59.845 50.000 12.74 0.00 37.81 2.24
408 410 2.130395 CGCAGATCGTTCATGCTGTAT 58.870 47.619 12.74 0.00 37.81 2.29
409 411 1.134175 TCGCAGATCGTTCATGCTGTA 59.866 47.619 12.74 1.39 37.81 2.74
410 412 0.108662 TCGCAGATCGTTCATGCTGT 60.109 50.000 12.74 0.00 37.81 4.40
411 413 1.001624 TTCGCAGATCGTTCATGCTG 58.998 50.000 12.74 0.00 37.81 4.41
412 414 1.002366 GTTCGCAGATCGTTCATGCT 58.998 50.000 12.74 0.00 37.81 3.79
413 415 0.314578 CGTTCGCAGATCGTTCATGC 60.315 55.000 0.00 2.72 43.77 4.06
414 416 3.767900 CGTTCGCAGATCGTTCATG 57.232 52.632 0.00 0.00 43.77 3.07
421 423 3.693245 ACGCATCGTTCGCAGATC 58.307 55.556 0.00 0.00 36.35 2.75
430 432 1.969085 TGTGTAGGGAACGCATCGT 59.031 52.632 0.00 0.00 43.60 3.73
431 433 4.902308 TGTGTAGGGAACGCATCG 57.098 55.556 0.00 0.00 43.60 3.84
435 437 2.604046 AGATGATGTGTAGGGAACGC 57.396 50.000 0.00 0.00 39.17 4.84
436 438 6.978343 TTTTTAGATGATGTGTAGGGAACG 57.022 37.500 0.00 0.00 0.00 3.95
457 459 5.351458 GCAGGAGGCGATTGATTTATTTTT 58.649 37.500 0.00 0.00 0.00 1.94
458 460 4.936891 GCAGGAGGCGATTGATTTATTTT 58.063 39.130 0.00 0.00 0.00 1.82
459 461 4.574599 GCAGGAGGCGATTGATTTATTT 57.425 40.909 0.00 0.00 0.00 1.40
474 476 3.939837 ATGTCCGTGCACGCAGGAG 62.940 63.158 33.17 19.15 38.18 3.69
475 477 4.002506 ATGTCCGTGCACGCAGGA 62.003 61.111 33.17 21.93 38.18 3.86
476 478 3.792047 CATGTCCGTGCACGCAGG 61.792 66.667 33.17 23.25 38.18 4.85
477 479 3.792047 CCATGTCCGTGCACGCAG 61.792 66.667 33.17 20.66 38.18 5.18
478 480 4.617520 ACCATGTCCGTGCACGCA 62.618 61.111 33.17 25.74 38.18 5.24
479 481 3.353836 AACCATGTCCGTGCACGC 61.354 61.111 33.17 20.85 38.18 5.34
480 482 2.555782 CAACCATGTCCGTGCACG 59.444 61.111 31.77 31.77 39.44 5.34
481 483 1.577328 CTCCAACCATGTCCGTGCAC 61.577 60.000 6.82 6.82 0.00 4.57
482 484 1.302431 CTCCAACCATGTCCGTGCA 60.302 57.895 0.00 0.00 0.00 4.57
483 485 2.690778 GCTCCAACCATGTCCGTGC 61.691 63.158 0.00 0.00 0.00 5.34
484 486 1.003355 AGCTCCAACCATGTCCGTG 60.003 57.895 0.00 0.00 0.00 4.94
485 487 1.003355 CAGCTCCAACCATGTCCGT 60.003 57.895 0.00 0.00 0.00 4.69
486 488 2.401766 GCAGCTCCAACCATGTCCG 61.402 63.158 0.00 0.00 0.00 4.79
487 489 2.048603 GGCAGCTCCAACCATGTCC 61.049 63.158 0.00 0.00 34.01 4.02
488 490 1.303561 TGGCAGCTCCAACCATGTC 60.304 57.895 2.78 0.00 43.21 3.06
489 491 2.845784 TGGCAGCTCCAACCATGT 59.154 55.556 2.78 0.00 43.21 3.21
496 498 2.274948 GATCCCATGTGGCAGCTCCA 62.275 60.000 0.00 1.25 44.18 3.86
497 499 1.527844 GATCCCATGTGGCAGCTCC 60.528 63.158 0.00 0.00 0.00 4.70
498 500 1.890979 CGATCCCATGTGGCAGCTC 60.891 63.158 0.00 0.00 0.00 4.09
499 501 2.191375 CGATCCCATGTGGCAGCT 59.809 61.111 0.00 0.00 0.00 4.24
500 502 2.124570 ACGATCCCATGTGGCAGC 60.125 61.111 0.00 0.00 0.00 5.25
501 503 1.524621 GGACGATCCCATGTGGCAG 60.525 63.158 0.00 0.00 0.00 4.85
502 504 1.634865 ATGGACGATCCCATGTGGCA 61.635 55.000 2.95 0.00 44.77 4.92
503 505 1.149174 ATGGACGATCCCATGTGGC 59.851 57.895 2.95 0.00 44.77 5.01
509 511 0.392706 CCGATTCATGGACGATCCCA 59.607 55.000 0.00 0.00 41.05 4.37
510 512 0.951040 GCCGATTCATGGACGATCCC 60.951 60.000 0.00 0.00 35.03 3.85
511 513 0.034059 AGCCGATTCATGGACGATCC 59.966 55.000 0.00 0.00 36.96 3.36
512 514 1.143305 CAGCCGATTCATGGACGATC 58.857 55.000 0.00 0.00 0.00 3.69
513 515 0.882042 GCAGCCGATTCATGGACGAT 60.882 55.000 0.00 0.00 0.00 3.73
514 516 1.521457 GCAGCCGATTCATGGACGA 60.521 57.895 0.00 0.00 0.00 4.20
515 517 1.522355 AGCAGCCGATTCATGGACG 60.522 57.895 0.00 0.00 0.00 4.79
516 518 1.442526 CCAGCAGCCGATTCATGGAC 61.443 60.000 0.00 0.00 0.00 4.02
517 519 1.153107 CCAGCAGCCGATTCATGGA 60.153 57.895 0.00 0.00 0.00 3.41
518 520 2.191513 CCCAGCAGCCGATTCATGG 61.192 63.158 0.00 0.00 0.00 3.66
519 521 1.033746 AACCCAGCAGCCGATTCATG 61.034 55.000 0.00 0.00 0.00 3.07
520 522 1.033746 CAACCCAGCAGCCGATTCAT 61.034 55.000 0.00 0.00 0.00 2.57
521 523 1.675310 CAACCCAGCAGCCGATTCA 60.675 57.895 0.00 0.00 0.00 2.57
522 524 1.648467 GACAACCCAGCAGCCGATTC 61.648 60.000 0.00 0.00 0.00 2.52
523 525 1.675641 GACAACCCAGCAGCCGATT 60.676 57.895 0.00 0.00 0.00 3.34
524 526 2.045926 GACAACCCAGCAGCCGAT 60.046 61.111 0.00 0.00 0.00 4.18
525 527 4.680237 CGACAACCCAGCAGCCGA 62.680 66.667 0.00 0.00 0.00 5.54
526 528 4.988598 ACGACAACCCAGCAGCCG 62.989 66.667 0.00 0.00 0.00 5.52
527 529 3.357079 CACGACAACCCAGCAGCC 61.357 66.667 0.00 0.00 0.00 4.85
528 530 2.591715 ACACGACAACCCAGCAGC 60.592 61.111 0.00 0.00 0.00 5.25
529 531 0.249699 TACACACGACAACCCAGCAG 60.250 55.000 0.00 0.00 0.00 4.24
530 532 0.394938 ATACACACGACAACCCAGCA 59.605 50.000 0.00 0.00 0.00 4.41
531 533 2.268298 CTATACACACGACAACCCAGC 58.732 52.381 0.00 0.00 0.00 4.85
532 534 2.268298 GCTATACACACGACAACCCAG 58.732 52.381 0.00 0.00 0.00 4.45
533 535 1.619332 TGCTATACACACGACAACCCA 59.381 47.619 0.00 0.00 0.00 4.51
534 536 2.268298 CTGCTATACACACGACAACCC 58.732 52.381 0.00 0.00 0.00 4.11
535 537 1.659098 GCTGCTATACACACGACAACC 59.341 52.381 0.00 0.00 0.00 3.77
536 538 1.320555 CGCTGCTATACACACGACAAC 59.679 52.381 0.00 0.00 0.00 3.32
537 539 1.624487 CGCTGCTATACACACGACAA 58.376 50.000 0.00 0.00 0.00 3.18
538 540 0.800683 GCGCTGCTATACACACGACA 60.801 55.000 0.00 0.00 0.00 4.35
539 541 0.525668 AGCGCTGCTATACACACGAC 60.526 55.000 10.39 0.00 36.99 4.34
540 542 0.525455 CAGCGCTGCTATACACACGA 60.525 55.000 26.68 0.00 36.40 4.35
541 543 0.525455 TCAGCGCTGCTATACACACG 60.525 55.000 32.44 4.42 36.40 4.49
542 544 1.640428 TTCAGCGCTGCTATACACAC 58.360 50.000 32.44 0.00 36.40 3.82
543 545 2.204237 CATTCAGCGCTGCTATACACA 58.796 47.619 32.44 9.99 36.40 3.72
544 546 2.033407 CACATTCAGCGCTGCTATACAC 60.033 50.000 32.44 0.00 36.40 2.90
545 547 2.159114 TCACATTCAGCGCTGCTATACA 60.159 45.455 32.44 11.64 36.40 2.29
546 548 2.473816 TCACATTCAGCGCTGCTATAC 58.526 47.619 32.44 0.00 36.40 1.47
547 549 2.888834 TCACATTCAGCGCTGCTATA 57.111 45.000 32.44 16.99 36.40 1.31
548 550 2.251409 ATCACATTCAGCGCTGCTAT 57.749 45.000 32.44 23.25 36.40 2.97
549 551 1.935873 GAATCACATTCAGCGCTGCTA 59.064 47.619 32.44 22.05 36.40 3.49
550 552 0.731417 GAATCACATTCAGCGCTGCT 59.269 50.000 32.44 18.88 40.77 4.24
551 553 0.248377 GGAATCACATTCAGCGCTGC 60.248 55.000 32.44 14.52 41.03 5.25
552 554 1.089112 TGGAATCACATTCAGCGCTG 58.911 50.000 31.53 31.53 41.03 5.18
553 555 1.089920 GTGGAATCACATTCAGCGCT 58.910 50.000 2.64 2.64 43.13 5.92
554 556 0.247814 CGTGGAATCACATTCAGCGC 60.248 55.000 0.00 0.00 43.79 5.92
555 557 1.061131 GTCGTGGAATCACATTCAGCG 59.939 52.381 0.00 2.91 43.79 5.18
556 558 1.061131 CGTCGTGGAATCACATTCAGC 59.939 52.381 0.00 0.00 43.79 4.26
557 559 1.660607 CCGTCGTGGAATCACATTCAG 59.339 52.381 0.00 0.00 43.79 3.02
558 560 1.720805 CCGTCGTGGAATCACATTCA 58.279 50.000 0.00 0.00 43.79 2.57
559 561 0.373716 GCCGTCGTGGAATCACATTC 59.626 55.000 0.51 0.00 43.79 2.67
560 562 1.358725 CGCCGTCGTGGAATCACATT 61.359 55.000 0.51 0.00 43.79 2.71
561 563 1.809619 CGCCGTCGTGGAATCACAT 60.810 57.895 0.51 0.00 43.79 3.21
562 564 2.431771 CGCCGTCGTGGAATCACA 60.432 61.111 0.51 0.00 43.79 3.58
563 565 3.186047 CCGCCGTCGTGGAATCAC 61.186 66.667 0.51 0.00 42.83 3.06
590 592 1.537202 GAGATGCACACAACACCTTCC 59.463 52.381 0.00 0.00 0.00 3.46
604 606 6.292061 CGCATTAGTCTACTTTTGAGAGATGC 60.292 42.308 0.00 0.00 34.63 3.91
812 817 0.517316 AACGAAATGAGCAAGACCGC 59.483 50.000 0.00 0.00 0.00 5.68
1086 1122 0.172803 CGTAGTTGAAGAGGTCCCGG 59.827 60.000 0.00 0.00 0.00 5.73
1238 1274 0.110823 CAAGGTCGAAAAGAACCGCG 60.111 55.000 0.00 0.00 37.23 6.46
1245 1281 3.999663 AGAATCAGAGCAAGGTCGAAAAG 59.000 43.478 0.00 0.00 0.00 2.27
1316 1370 0.910088 AAGAGGGGGAGAAGGAACCG 60.910 60.000 0.00 0.00 0.00 4.44
1317 1371 0.913205 GAAGAGGGGGAGAAGGAACC 59.087 60.000 0.00 0.00 0.00 3.62
1332 1386 3.646715 CCAAGTGGCCCCGGAAGA 61.647 66.667 0.73 0.00 0.00 2.87
1349 1403 2.124942 CCAGAGAAAGGCCGAGGC 60.125 66.667 5.37 5.37 41.06 4.70
1350 1404 0.674895 CAACCAGAGAAAGGCCGAGG 60.675 60.000 0.00 0.00 0.00 4.63
1351 1405 1.301677 GCAACCAGAGAAAGGCCGAG 61.302 60.000 0.00 0.00 0.00 4.63
1352 1406 1.302511 GCAACCAGAGAAAGGCCGA 60.303 57.895 0.00 0.00 0.00 5.54
1353 1407 2.680913 CGCAACCAGAGAAAGGCCG 61.681 63.158 0.00 0.00 0.00 6.13
1354 1408 2.335712 CCGCAACCAGAGAAAGGCC 61.336 63.158 0.00 0.00 0.00 5.19
1355 1409 1.172812 AACCGCAACCAGAGAAAGGC 61.173 55.000 0.00 0.00 0.00 4.35
1356 1410 0.875059 GAACCGCAACCAGAGAAAGG 59.125 55.000 0.00 0.00 0.00 3.11
1357 1411 1.884235 AGAACCGCAACCAGAGAAAG 58.116 50.000 0.00 0.00 0.00 2.62
1358 1412 1.946768 CAAGAACCGCAACCAGAGAAA 59.053 47.619 0.00 0.00 0.00 2.52
1475 1529 1.084289 AAGAACGCGACCAATTAGGC 58.916 50.000 15.93 0.00 43.14 3.93
1632 1692 1.745827 GCGTACATGGCCCAATACAGT 60.746 52.381 0.00 0.00 0.00 3.55
1644 1704 2.125713 TGAGCCCACGCGTACATG 60.126 61.111 13.44 0.00 41.18 3.21
1963 2024 6.237490 CGCACTATACGAAAACTCTAAACCAG 60.237 42.308 0.00 0.00 0.00 4.00
1991 2052 6.414732 TCCATTCCAGTTACGATTGATCTTT 58.585 36.000 0.00 0.00 0.00 2.52
2002 2063 5.091261 ACAGACTGATCCATTCCAGTTAC 57.909 43.478 10.08 0.00 43.02 2.50
2014 2075 9.994432 CATTGGATAAAACTTAACAGACTGATC 57.006 33.333 10.08 0.00 0.00 2.92
2050 2111 5.770162 CAGGACTGAACCAAATCTTTTAGGT 59.230 40.000 0.00 0.00 35.47 3.08
2092 2153 9.449719 GAACTTCCAGGAAAAGAATTAGACATA 57.550 33.333 2.72 0.00 0.00 2.29
2122 2183 2.533391 GATGCGCACCTTGCCACTTC 62.533 60.000 14.90 0.00 41.12 3.01
2123 2184 2.598394 ATGCGCACCTTGCCACTT 60.598 55.556 14.90 0.00 41.12 3.16
2124 2185 3.058160 GATGCGCACCTTGCCACT 61.058 61.111 14.90 0.00 41.12 4.00
2125 2186 3.364441 TGATGCGCACCTTGCCAC 61.364 61.111 14.90 0.00 41.12 5.01
2134 2203 0.608856 ATTTCCCAGTGTGATGCGCA 60.609 50.000 14.96 14.96 0.00 6.09
2145 2214 8.292444 TCCACTTGACAAATATAATTTCCCAG 57.708 34.615 0.00 0.00 0.00 4.45
2160 2229 7.719193 TGATACTTCATTTTCTTCCACTTGACA 59.281 33.333 0.00 0.00 0.00 3.58
2278 2347 1.119684 AACAAAGTTTGGGACTGGGC 58.880 50.000 19.45 0.00 39.00 5.36
2290 2360 4.700213 ACACTGCTAAACTGTCAACAAAGT 59.300 37.500 0.00 0.00 0.00 2.66
2313 2383 1.163420 AAACCATTGTCGCACTCGCA 61.163 50.000 0.00 0.00 38.40 5.10
2315 2385 0.725784 GCAAACCATTGTCGCACTCG 60.726 55.000 0.00 0.00 38.85 4.18
2316 2386 0.593128 AGCAAACCATTGTCGCACTC 59.407 50.000 0.00 0.00 38.85 3.51
2323 2393 3.902881 TTCAACCAAGCAAACCATTGT 57.097 38.095 0.00 0.00 38.85 2.71
2440 2513 7.147302 ACCAACCAGGAAGATAAATACTGCTAT 60.147 37.037 0.00 0.00 41.22 2.97
2529 2602 6.191315 ACACAATGGGTATTAAGTTGGCATA 58.809 36.000 0.00 0.00 0.00 3.14
2731 2804 1.628846 GTTCCCTCCTGCTTCCTACAA 59.371 52.381 0.00 0.00 0.00 2.41
2750 2823 2.568546 TGGGTCAGGGATAGTCATGT 57.431 50.000 0.00 0.00 0.00 3.21
2927 3000 6.442112 CCCAAAAGAAGATCTGTTGAAGTTC 58.558 40.000 11.06 0.00 42.89 3.01
3312 3388 4.576053 GCATACTGCCAGTTTCATCATACA 59.424 41.667 1.02 0.00 37.42 2.29
3316 3392 3.054875 AGAGCATACTGCCAGTTTCATCA 60.055 43.478 1.02 0.00 46.52 3.07
3464 3540 0.663153 GTGGAGAAAGCGTTGCAGTT 59.337 50.000 0.00 0.00 0.00 3.16
3631 3707 3.327757 TCTGAAGTATGAGTTGCCCAGTT 59.672 43.478 0.00 0.00 0.00 3.16
4140 4241 5.276868 GCTTGATCGCGTATTCAACTGTAAT 60.277 40.000 5.77 0.00 0.00 1.89
4143 4244 2.348666 GCTTGATCGCGTATTCAACTGT 59.651 45.455 5.77 0.00 0.00 3.55
4244 4345 7.112122 GGATCCCTTTTAATGGATTGCTTTTT 58.888 34.615 0.00 0.00 41.44 1.94
4245 4346 6.215227 TGGATCCCTTTTAATGGATTGCTTTT 59.785 34.615 9.90 0.00 41.44 2.27
4246 4347 5.725822 TGGATCCCTTTTAATGGATTGCTTT 59.274 36.000 9.90 0.00 41.44 3.51
4249 4350 5.129320 AGTTGGATCCCTTTTAATGGATTGC 59.871 40.000 9.90 0.00 41.44 3.56
4250 4351 6.380846 TGAGTTGGATCCCTTTTAATGGATTG 59.619 38.462 9.90 0.00 41.44 2.67
4253 4354 5.528600 TGAGTTGGATCCCTTTTAATGGA 57.471 39.130 9.90 0.00 34.54 3.41
4254 4355 5.716703 ACTTGAGTTGGATCCCTTTTAATGG 59.283 40.000 9.90 0.00 0.00 3.16
4255 4356 6.840780 ACTTGAGTTGGATCCCTTTTAATG 57.159 37.500 9.90 0.00 0.00 1.90
4463 4616 7.880059 TCAGTTGCTCAGATATTATTCGATG 57.120 36.000 0.00 0.00 0.00 3.84
4494 4647 2.159448 TGCAACAGAAACCACAGAAACG 60.159 45.455 0.00 0.00 0.00 3.60
4553 4706 9.740239 CTTCTAATACAAATAATGCTGCAATGT 57.260 29.630 6.36 9.63 0.00 2.71
4581 4734 5.220854 CCCACAAAGCGTTAGATAAAGGATG 60.221 44.000 0.00 0.00 0.00 3.51
4584 4737 4.007659 ACCCACAAAGCGTTAGATAAAGG 58.992 43.478 0.00 0.00 0.00 3.11
4640 4793 2.644676 GTTGGCCCAGAGATAGGTTTC 58.355 52.381 0.00 0.00 0.00 2.78
4641 4794 1.285078 GGTTGGCCCAGAGATAGGTTT 59.715 52.381 0.00 0.00 0.00 3.27
4650 4803 3.407967 GATCCCGGTTGGCCCAGA 61.408 66.667 0.00 0.00 0.00 3.86
4685 4838 2.777969 CTGTTCTGCATCAGCTCCC 58.222 57.895 0.00 0.00 42.74 4.30
4703 4856 2.874701 CTCATTGCAGGTGTACCATAGC 59.125 50.000 3.56 5.18 38.89 2.97
4774 4927 3.996921 ACCTTCTCTGTTCTGCATCAT 57.003 42.857 0.00 0.00 0.00 2.45
4804 4957 2.807967 CTGGAAATGACAAGCGTTCAGA 59.192 45.455 0.00 0.00 0.00 3.27
4839 4992 8.867112 AAATATGACACAGAATTTCATGCATC 57.133 30.769 0.00 0.00 32.24 3.91
4849 5002 5.163683 GCAGCACTGAAATATGACACAGAAT 60.164 40.000 0.81 0.00 34.88 2.40
4885 5038 1.248486 GCAGGTCCCTTTCCTTTGAC 58.752 55.000 0.00 0.00 32.37 3.18
4941 5094 1.820519 TCATCTGCCATCAAACAAGCC 59.179 47.619 0.00 0.00 0.00 4.35
5046 5199 2.158813 TGCAAAAAGAACCGTCTCCTCT 60.159 45.455 0.00 0.00 30.70 3.69
5099 5252 3.330126 TGCTAGTAGGTTGATAGGCCT 57.670 47.619 11.78 11.78 38.81 5.19
5410 5563 5.302313 ACCGCCTCTTTCTAACTTCCTATAG 59.698 44.000 0.00 0.00 0.00 1.31
5430 5583 1.264288 GCCATCTACAGCATTTACCGC 59.736 52.381 0.00 0.00 0.00 5.68
5538 5691 1.047801 GCCTGTGTTTTTCCCCACAT 58.952 50.000 0.00 0.00 40.53 3.21
5673 5869 5.836821 GTGAAACTGAAACCCTTTCTTCT 57.163 39.130 0.00 0.00 40.32 2.85
5699 5895 2.427410 CAACGAAAGGCAGCACGC 60.427 61.111 0.00 0.00 41.28 5.34
5700 5896 2.252260 CCAACGAAAGGCAGCACG 59.748 61.111 0.00 0.00 0.00 5.34
5701 5897 2.644992 CCCAACGAAAGGCAGCAC 59.355 61.111 0.00 0.00 0.00 4.40
5702 5898 2.424842 ATCCCCAACGAAAGGCAGCA 62.425 55.000 0.00 0.00 0.00 4.41
5704 5900 0.322456 TGATCCCCAACGAAAGGCAG 60.322 55.000 0.00 0.00 0.00 4.85
5705 5901 0.322456 CTGATCCCCAACGAAAGGCA 60.322 55.000 0.00 0.00 0.00 4.75
5706 5902 0.322546 ACTGATCCCCAACGAAAGGC 60.323 55.000 0.00 0.00 0.00 4.35
5707 5903 2.084546 GAACTGATCCCCAACGAAAGG 58.915 52.381 0.00 0.00 0.00 3.11
5712 5908 0.734889 GCATGAACTGATCCCCAACG 59.265 55.000 0.00 0.00 0.00 4.10
5751 6032 5.880887 CCTTGACCTTCAAAATCCTACTACC 59.119 44.000 0.00 0.00 35.73 3.18
5815 6098 4.202567 TGGACTGTAGAAGGGCAAGAAATT 60.203 41.667 0.00 0.00 0.00 1.82
5817 6100 2.708861 TGGACTGTAGAAGGGCAAGAAA 59.291 45.455 0.00 0.00 0.00 2.52
5831 6114 9.533831 AAAAATGTAAGAAGGATATTGGACTGT 57.466 29.630 0.00 0.00 0.00 3.55
5847 6130 7.486647 CCTTCCTGATGATCCAAAAATGTAAG 58.513 38.462 0.00 0.00 0.00 2.34
5852 6135 4.617593 AGCCTTCCTGATGATCCAAAAAT 58.382 39.130 0.00 0.00 0.00 1.82
5858 6143 2.268762 GGAAGCCTTCCTGATGATCC 57.731 55.000 16.46 0.00 46.57 3.36
5878 6163 7.926674 TGTGTGACTGATATTTTCATGTCAT 57.073 32.000 0.00 0.00 40.89 3.06
5888 6174 6.114187 TCCTCAACTTGTGTGACTGATATT 57.886 37.500 0.00 0.00 0.00 1.28
5890 6176 5.745312 ATCCTCAACTTGTGTGACTGATA 57.255 39.130 0.00 0.00 0.00 2.15
5897 6183 5.296780 AGTTGTGTAATCCTCAACTTGTGTG 59.703 40.000 4.31 0.00 45.97 3.82
5898 6184 5.437060 AGTTGTGTAATCCTCAACTTGTGT 58.563 37.500 4.31 0.00 45.97 3.72
5917 6205 8.683615 ACTCTAGTTTGTTTCCCTTTTTAGTTG 58.316 33.333 0.00 0.00 0.00 3.16
5918 6206 8.818622 ACTCTAGTTTGTTTCCCTTTTTAGTT 57.181 30.769 0.00 0.00 0.00 2.24
5919 6207 8.818622 AACTCTAGTTTGTTTCCCTTTTTAGT 57.181 30.769 0.00 0.00 33.93 2.24
5925 6213 7.340999 TGCTTTAAACTCTAGTTTGTTTCCCTT 59.659 33.333 16.48 0.00 46.56 3.95
5927 6215 7.012989 TCTGCTTTAAACTCTAGTTTGTTTCCC 59.987 37.037 16.48 3.26 46.56 3.97
5928 6216 7.927048 TCTGCTTTAAACTCTAGTTTGTTTCC 58.073 34.615 16.48 4.10 46.56 3.13
6013 6302 3.004734 ACAAACAGCTGCATGTAAAGGAC 59.995 43.478 20.02 0.00 31.70 3.85
6037 6329 4.207165 GCCTAAGATACTTCCATGCCAAA 58.793 43.478 0.00 0.00 0.00 3.28
6040 6332 2.784347 GGCCTAAGATACTTCCATGCC 58.216 52.381 0.00 0.00 0.00 4.40
6042 6334 2.417719 GCGGCCTAAGATACTTCCATG 58.582 52.381 0.00 0.00 0.00 3.66
6069 6361 2.998097 CCATGGAGCCGAGGGAAA 59.002 61.111 5.56 0.00 0.00 3.13
6070 6362 3.797353 GCCATGGAGCCGAGGGAA 61.797 66.667 18.40 0.00 0.00 3.97
6073 6365 4.247380 GGAGCCATGGAGCCGAGG 62.247 72.222 18.40 0.00 0.00 4.63
6077 6369 2.514824 GAACGGAGCCATGGAGCC 60.515 66.667 18.40 14.60 0.00 4.70
6078 6370 2.514824 GGAACGGAGCCATGGAGC 60.515 66.667 18.40 5.75 0.00 4.70
6096 6388 3.175109 AGGATTTTAACTACCGCTCCG 57.825 47.619 0.00 0.00 0.00 4.63
6097 6389 3.626217 CCAAGGATTTTAACTACCGCTCC 59.374 47.826 0.00 0.00 0.00 4.70
6099 6391 4.514401 CTCCAAGGATTTTAACTACCGCT 58.486 43.478 0.00 0.00 0.00 5.52
6100 6392 3.064958 GCTCCAAGGATTTTAACTACCGC 59.935 47.826 0.00 0.00 0.00 5.68
6101 6393 3.626217 GGCTCCAAGGATTTTAACTACCG 59.374 47.826 0.00 0.00 0.00 4.02
6102 6394 4.595986 TGGCTCCAAGGATTTTAACTACC 58.404 43.478 0.00 0.00 0.00 3.18
6104 6396 4.263727 TGCTGGCTCCAAGGATTTTAACTA 60.264 41.667 0.00 0.00 0.00 2.24
6107 6399 3.168035 TGCTGGCTCCAAGGATTTTAA 57.832 42.857 0.00 0.00 0.00 1.52
6109 6401 2.014010 TTGCTGGCTCCAAGGATTTT 57.986 45.000 0.00 0.00 0.00 1.82
6110 6402 1.620323 GTTTGCTGGCTCCAAGGATTT 59.380 47.619 0.00 0.00 0.00 2.17
6111 6403 1.260544 GTTTGCTGGCTCCAAGGATT 58.739 50.000 0.00 0.00 0.00 3.01
6112 6404 0.112995 TGTTTGCTGGCTCCAAGGAT 59.887 50.000 0.00 0.00 0.00 3.24
6114 6406 1.962144 CTGTTTGCTGGCTCCAAGG 59.038 57.895 0.00 0.00 0.00 3.61
6115 6407 1.288127 GCTGTTTGCTGGCTCCAAG 59.712 57.895 0.00 0.00 38.95 3.61
6116 6408 3.447040 GCTGTTTGCTGGCTCCAA 58.553 55.556 0.00 0.00 38.95 3.53
6126 6418 0.460284 ATCCGCGGAGTAGCTGTTTG 60.460 55.000 33.87 0.00 34.40 2.93
6127 6419 0.249398 AATCCGCGGAGTAGCTGTTT 59.751 50.000 33.87 17.14 34.40 2.83
6130 6422 0.952280 TAGAATCCGCGGAGTAGCTG 59.048 55.000 33.87 0.34 34.40 4.24
6132 6424 1.236628 TCTAGAATCCGCGGAGTAGC 58.763 55.000 33.87 19.77 0.00 3.58
6133 6425 4.506886 AATTCTAGAATCCGCGGAGTAG 57.493 45.455 33.87 28.80 0.00 2.57
6134 6426 4.340097 TCAAATTCTAGAATCCGCGGAGTA 59.660 41.667 33.87 21.82 0.00 2.59
6135 6427 3.132289 TCAAATTCTAGAATCCGCGGAGT 59.868 43.478 33.87 32.29 0.00 3.85
6138 6430 3.248602 CCTTCAAATTCTAGAATCCGCGG 59.751 47.826 22.12 22.12 0.00 6.46
6140 6432 5.119694 ACTCCTTCAAATTCTAGAATCCGC 58.880 41.667 18.19 0.00 0.00 5.54
6141 6433 6.037610 CCAACTCCTTCAAATTCTAGAATCCG 59.962 42.308 18.19 12.13 0.00 4.18
6142 6434 6.887002 ACCAACTCCTTCAAATTCTAGAATCC 59.113 38.462 18.19 0.00 0.00 3.01
6143 6435 7.148171 CCACCAACTCCTTCAAATTCTAGAATC 60.148 40.741 18.19 0.00 0.00 2.52
6144 6436 6.660949 CCACCAACTCCTTCAAATTCTAGAAT 59.339 38.462 12.37 12.37 0.00 2.40
6145 6437 6.003950 CCACCAACTCCTTCAAATTCTAGAA 58.996 40.000 7.82 7.82 0.00 2.10
6146 6438 5.309543 TCCACCAACTCCTTCAAATTCTAGA 59.690 40.000 0.00 0.00 0.00 2.43
6147 6439 5.412904 GTCCACCAACTCCTTCAAATTCTAG 59.587 44.000 0.00 0.00 0.00 2.43
6148 6440 5.073144 AGTCCACCAACTCCTTCAAATTCTA 59.927 40.000 0.00 0.00 0.00 2.10
6149 6441 4.141158 AGTCCACCAACTCCTTCAAATTCT 60.141 41.667 0.00 0.00 0.00 2.40
6151 6443 3.891366 CAGTCCACCAACTCCTTCAAATT 59.109 43.478 0.00 0.00 0.00 1.82
6152 6444 3.490348 CAGTCCACCAACTCCTTCAAAT 58.510 45.455 0.00 0.00 0.00 2.32
6153 6445 2.930950 CAGTCCACCAACTCCTTCAAA 58.069 47.619 0.00 0.00 0.00 2.69
6154 6446 1.476833 GCAGTCCACCAACTCCTTCAA 60.477 52.381 0.00 0.00 0.00 2.69
6155 6447 0.108585 GCAGTCCACCAACTCCTTCA 59.891 55.000 0.00 0.00 0.00 3.02
6158 6450 2.883828 CGGCAGTCCACCAACTCCT 61.884 63.158 0.00 0.00 0.00 3.69
6159 6451 2.358737 CGGCAGTCCACCAACTCC 60.359 66.667 0.00 0.00 0.00 3.85
6160 6452 1.070786 TTCGGCAGTCCACCAACTC 59.929 57.895 0.00 0.00 0.00 3.01
6161 6453 1.227853 GTTCGGCAGTCCACCAACT 60.228 57.895 0.00 0.00 0.00 3.16
6162 6454 2.604174 CGTTCGGCAGTCCACCAAC 61.604 63.158 0.00 0.00 0.00 3.77
6163 6455 2.280524 CGTTCGGCAGTCCACCAA 60.281 61.111 0.00 0.00 0.00 3.67
6174 6466 0.437295 CAAACTAAGGACGCGTTCGG 59.563 55.000 15.53 9.98 40.69 4.30
6175 6467 0.437295 CCAAACTAAGGACGCGTTCG 59.563 55.000 15.53 0.17 42.43 3.95
6178 6470 2.243602 TTTCCAAACTAAGGACGCGT 57.756 45.000 13.85 13.85 34.19 6.01
6179 6471 2.546789 ACTTTTCCAAACTAAGGACGCG 59.453 45.455 3.53 3.53 34.19 6.01
6180 6472 4.992951 TCTACTTTTCCAAACTAAGGACGC 59.007 41.667 0.00 0.00 34.19 5.19
6181 6473 5.120363 GCTCTACTTTTCCAAACTAAGGACG 59.880 44.000 0.00 0.00 34.19 4.79
6182 6474 6.231951 AGCTCTACTTTTCCAAACTAAGGAC 58.768 40.000 0.00 0.00 34.19 3.85
6183 6475 6.435292 AGCTCTACTTTTCCAAACTAAGGA 57.565 37.500 0.00 0.00 0.00 3.36
6184 6476 5.348997 CGAGCTCTACTTTTCCAAACTAAGG 59.651 44.000 12.85 0.00 0.00 2.69
6191 6491 5.187186 ACCTATTCGAGCTCTACTTTTCCAA 59.813 40.000 12.85 0.00 0.00 3.53
6197 6497 6.096987 TGAATTCACCTATTCGAGCTCTACTT 59.903 38.462 12.85 0.00 37.34 2.24
6215 6515 7.587037 ACAAAGATTCAAGAAGGTGAATTCA 57.413 32.000 3.38 3.38 45.98 2.57
6223 6523 7.012327 TGACAACACTACAAAGATTCAAGAAGG 59.988 37.037 0.00 0.00 0.00 3.46
6234 6534 9.891828 TTGCTAATAATTGACAACACTACAAAG 57.108 29.630 0.00 0.00 0.00 2.77
6238 6538 9.840427 ACAATTGCTAATAATTGACAACACTAC 57.160 29.630 15.67 0.00 46.13 2.73
6262 6562 4.935352 ACAAGCAAGCAAATCCTAAACA 57.065 36.364 0.00 0.00 0.00 2.83
6267 6567 3.255149 CAGAGAACAAGCAAGCAAATCCT 59.745 43.478 0.00 0.00 0.00 3.24
6271 6571 4.924305 ATTCAGAGAACAAGCAAGCAAA 57.076 36.364 0.00 0.00 0.00 3.68
6296 6596 2.623416 TCATCATCCGTAGTACCAGCTG 59.377 50.000 6.78 6.78 0.00 4.24
6299 6599 4.855715 ACATCATCATCCGTAGTACCAG 57.144 45.455 0.00 0.00 0.00 4.00
6302 6602 5.635280 CCATCAACATCATCATCCGTAGTAC 59.365 44.000 0.00 0.00 0.00 2.73
6318 6618 4.041762 GGCCGGTCCCCATCAACA 62.042 66.667 1.90 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.