Multiple sequence alignment - TraesCS7A01G172300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G172300 chr7A 100.000 6778 0 0 1 6778 127051289 127044512 0.000000e+00 12517.0
1 TraesCS7A01G172300 chr7A 84.255 235 19 7 6318 6539 127038524 127038295 5.320000e-51 213.0
2 TraesCS7A01G172300 chr7A 83.505 97 13 2 305 401 160418073 160417980 3.370000e-13 87.9
3 TraesCS7A01G172300 chr7A 97.436 39 1 0 1615 1653 113110552 113110590 4.390000e-07 67.6
4 TraesCS7A01G172300 chr7D 93.132 3931 167 45 2916 6778 124842981 124839086 0.000000e+00 5668.0
5 TraesCS7A01G172300 chr7D 93.038 2255 109 24 608 2846 124845496 124843274 0.000000e+00 3251.0
6 TraesCS7A01G172300 chr7D 90.909 209 18 1 403 611 124845746 124845539 5.180000e-71 279.0
7 TraesCS7A01G172300 chr7D 84.188 234 20 3 6315 6539 124830034 124829809 1.920000e-50 211.0
8 TraesCS7A01G172300 chr7D 87.805 82 8 2 1443 1524 124844615 124844536 2.010000e-15 95.3
9 TraesCS7A01G172300 chr7B 92.037 2248 131 25 608 2840 86671307 86669093 0.000000e+00 3116.0
10 TraesCS7A01G172300 chr7B 95.634 1672 62 4 2922 4592 86669095 86667434 0.000000e+00 2673.0
11 TraesCS7A01G172300 chr7B 94.057 1363 61 12 4591 5943 86667352 86666000 0.000000e+00 2050.0
12 TraesCS7A01G172300 chr7B 83.942 822 72 24 6007 6778 86665994 86665183 0.000000e+00 732.0
13 TraesCS7A01G172300 chr7B 90.909 121 9 2 397 517 86671615 86671497 1.960000e-35 161.0
14 TraesCS7A01G172300 chr7B 97.436 39 1 0 1615 1653 148948212 148948250 4.390000e-07 67.6
15 TraesCS7A01G172300 chr7B 97.222 36 1 0 1615 1650 312026466 312026501 2.040000e-05 62.1
16 TraesCS7A01G172300 chr3A 97.733 397 7 2 1 396 692358117 692357722 0.000000e+00 682.0
17 TraesCS7A01G172300 chr3A 92.000 50 3 1 339 388 40166255 40166303 1.220000e-07 69.4
18 TraesCS7A01G172300 chr5A 90.709 409 28 9 1 403 637121507 637121103 2.780000e-148 536.0
19 TraesCS7A01G172300 chr5A 94.681 94 4 1 2834 2927 556090620 556090712 1.970000e-30 145.0
20 TraesCS7A01G172300 chr5A 92.708 96 6 1 2829 2924 524672181 524672275 3.300000e-28 137.0
21 TraesCS7A01G172300 chr5A 97.436 39 1 0 1615 1653 400399095 400399057 4.390000e-07 67.6
22 TraesCS7A01G172300 chr2A 89.801 402 25 13 1 396 757830431 757830822 1.010000e-137 501.0
23 TraesCS7A01G172300 chr2A 95.699 93 3 1 2835 2927 699439297 699439206 1.520000e-31 148.0
24 TraesCS7A01G172300 chr2A 86.000 100 10 2 2669 2764 598965070 598964971 3.340000e-18 104.0
25 TraesCS7A01G172300 chr6A 89.873 395 24 9 8 398 575485760 575485378 1.700000e-135 494.0
26 TraesCS7A01G172300 chr6A 92.079 101 7 1 2830 2930 170907811 170907910 2.550000e-29 141.0
27 TraesCS7A01G172300 chr1D 88.861 404 28 11 1 396 471965708 471966102 1.320000e-131 481.0
28 TraesCS7A01G172300 chr1D 89.130 92 6 2 296 385 60288199 60288110 2.000000e-20 111.0
29 TraesCS7A01G172300 chr3D 96.667 90 2 1 2838 2927 402465442 402465354 1.520000e-31 148.0
30 TraesCS7A01G172300 chr3D 93.878 98 5 1 2828 2925 613838099 613838003 5.480000e-31 147.0
31 TraesCS7A01G172300 chr5D 92.929 99 6 1 2826 2924 509426568 509426471 7.090000e-30 143.0
32 TraesCS7A01G172300 chr5D 91.304 46 3 1 347 391 139149184 139149229 2.040000e-05 62.1
33 TraesCS7A01G172300 chr4D 94.624 93 4 1 2832 2924 252173795 252173704 7.090000e-30 143.0
34 TraesCS7A01G172300 chr4D 97.826 46 1 0 344 389 459812526 459812481 5.630000e-11 80.5
35 TraesCS7A01G172300 chr2B 94.505 91 4 1 2834 2924 239852606 239852695 9.170000e-29 139.0
36 TraesCS7A01G172300 chr2B 85.714 98 12 1 2669 2764 221266390 221266487 1.200000e-17 102.0
37 TraesCS7A01G172300 chr2B 80.583 103 12 6 2668 2764 456029472 456029572 9.430000e-09 73.1
38 TraesCS7A01G172300 chr4A 88.298 94 8 2 2665 2757 699179038 699178947 7.190000e-20 110.0
39 TraesCS7A01G172300 chr4A 88.000 100 2 5 2666 2764 736753877 736753967 7.190000e-20 110.0
40 TraesCS7A01G172300 chr4A 87.879 99 3 3 2666 2764 736753970 736753881 2.580000e-19 108.0
41 TraesCS7A01G172300 chr4A 86.957 92 11 1 305 396 571120846 571120756 1.200000e-17 102.0
42 TraesCS7A01G172300 chr6B 83.036 112 13 4 296 404 672700646 672700538 5.600000e-16 97.1
43 TraesCS7A01G172300 chr6B 85.000 100 8 5 296 391 672722474 672722378 2.010000e-15 95.3
44 TraesCS7A01G172300 chr6B 82.143 112 14 4 296 404 672711037 672710929 2.600000e-14 91.6
45 TraesCS7A01G172300 chr6B 87.692 65 6 2 2725 2788 692236286 692236349 2.620000e-09 75.0
46 TraesCS7A01G172300 chr6B 97.436 39 1 0 1615 1653 708553377 708553415 4.390000e-07 67.6
47 TraesCS7A01G172300 chr1A 84.091 88 10 2 305 391 550435226 550435142 1.570000e-11 82.4
48 TraesCS7A01G172300 chr4B 80.198 101 17 2 2667 2764 572830015 572830115 9.430000e-09 73.1
49 TraesCS7A01G172300 chr4B 100.000 28 0 0 583 610 28247275 28247248 1.200000e-02 52.8
50 TraesCS7A01G172300 chr5B 97.436 39 1 0 1615 1653 416464746 416464708 4.390000e-07 67.6
51 TraesCS7A01G172300 chr5B 97.436 39 1 0 1615 1653 421517167 421517129 4.390000e-07 67.6
52 TraesCS7A01G172300 chr1B 97.436 39 1 0 1615 1653 40487859 40487897 4.390000e-07 67.6
53 TraesCS7A01G172300 chr1B 94.872 39 2 0 1615 1653 144272899 144272861 2.040000e-05 62.1
54 TraesCS7A01G172300 chrUn 100.000 28 0 0 583 610 235861752 235861725 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G172300 chr7A 127044512 127051289 6777 True 12517.000 12517 100.0000 1 6778 1 chr7A.!!$R2 6777
1 TraesCS7A01G172300 chr7D 124839086 124845746 6660 True 2323.325 5668 91.2210 403 6778 4 chr7D.!!$R2 6375
2 TraesCS7A01G172300 chr7B 86665183 86671615 6432 True 1746.400 3116 91.3158 397 6778 5 chr7B.!!$R1 6381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
167 168 0.031178 AAAGCAGAACAAAGGCAGCG 59.969 50.000 0.00 0.00 0.00 5.18 F
278 279 0.038892 GACACTAGCGACGGGAAACA 60.039 55.000 0.00 0.00 0.00 2.83 F
280 281 0.319211 CACTAGCGACGGGAAACACA 60.319 55.000 0.00 0.00 0.00 3.72 F
531 587 0.320247 CTATAGCAGCCTTGGCTCCG 60.320 60.000 11.72 2.87 42.62 4.63 F
714 832 0.648958 GTATTTCTACGTGCACGGGC 59.351 55.000 39.21 17.40 44.95 6.13 F
2265 2387 0.896226 GTTGCTCGAGGTAGAGGGTT 59.104 55.000 15.58 0.00 38.63 4.11 F
3014 3375 0.690762 TGTAAGAACCCCTGGCAGAC 59.309 55.000 17.94 3.77 0.00 3.51 F
4036 4410 2.213499 CCATCCATGCTACGTTCCTTC 58.787 52.381 0.00 0.00 0.00 3.46 F
5072 5534 2.489329 GTGCAATCTACACAATGTGGCT 59.511 45.455 18.37 0.00 37.94 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1666 0.323629 AAGCCTAACCGCAGCTACAA 59.676 50.000 0.00 0.00 35.30 2.41 R
1547 1667 0.391130 CAAGCCTAACCGCAGCTACA 60.391 55.000 0.00 0.00 35.30 2.74 R
1834 1954 0.666577 AAGACGCTAACCACTCGCAC 60.667 55.000 0.00 0.00 0.00 5.34 R
2371 2494 1.667724 CACGATGCAAGGAACTCCATC 59.332 52.381 0.00 0.00 38.49 3.51 R
2540 2663 0.671163 CACCACATGCCAATGTTGCC 60.671 55.000 0.00 0.00 44.94 4.52 R
4172 4546 2.037251 GGTGTGGCTAGTGAAGAACTGA 59.963 50.000 0.00 0.00 40.26 3.41 R
4174 4548 2.047061 TGGTGTGGCTAGTGAAGAACT 58.953 47.619 0.00 0.00 43.40 3.01 R
5324 5786 1.902918 TTGCCGTGCAGAAGCCAAT 60.903 52.632 0.00 0.00 40.61 3.16 R
6474 6994 0.533978 CAGAGCCTCTCCGATCGAGA 60.534 60.000 18.66 15.69 45.75 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.156477 AGAAGATAGTGGTGGATAGGAGC 58.844 47.826 0.00 0.00 0.00 4.70
23 24 3.619900 AGATAGTGGTGGATAGGAGCA 57.380 47.619 0.00 0.00 0.00 4.26
24 25 3.505386 AGATAGTGGTGGATAGGAGCAG 58.495 50.000 0.00 0.00 0.00 4.24
25 26 3.141083 AGATAGTGGTGGATAGGAGCAGA 59.859 47.826 0.00 0.00 0.00 4.26
26 27 2.254152 AGTGGTGGATAGGAGCAGAA 57.746 50.000 0.00 0.00 0.00 3.02
27 28 2.114616 AGTGGTGGATAGGAGCAGAAG 58.885 52.381 0.00 0.00 0.00 2.85
28 29 1.139853 GTGGTGGATAGGAGCAGAAGG 59.860 57.143 0.00 0.00 0.00 3.46
29 30 1.273838 TGGTGGATAGGAGCAGAAGGT 60.274 52.381 0.00 0.00 0.00 3.50
30 31 1.139853 GGTGGATAGGAGCAGAAGGTG 59.860 57.143 0.00 0.00 0.00 4.00
43 44 3.539604 CAGAAGGTGCAGGAGATTTAGG 58.460 50.000 0.00 0.00 0.00 2.69
44 45 3.198635 CAGAAGGTGCAGGAGATTTAGGA 59.801 47.826 0.00 0.00 0.00 2.94
45 46 4.043596 AGAAGGTGCAGGAGATTTAGGAT 58.956 43.478 0.00 0.00 0.00 3.24
46 47 4.476479 AGAAGGTGCAGGAGATTTAGGATT 59.524 41.667 0.00 0.00 0.00 3.01
47 48 4.162040 AGGTGCAGGAGATTTAGGATTG 57.838 45.455 0.00 0.00 0.00 2.67
48 49 3.782523 AGGTGCAGGAGATTTAGGATTGA 59.217 43.478 0.00 0.00 0.00 2.57
49 50 3.879892 GGTGCAGGAGATTTAGGATTGAC 59.120 47.826 0.00 0.00 0.00 3.18
50 51 4.384647 GGTGCAGGAGATTTAGGATTGACT 60.385 45.833 0.00 0.00 0.00 3.41
51 52 4.813697 GTGCAGGAGATTTAGGATTGACTC 59.186 45.833 0.00 0.00 0.00 3.36
52 53 4.471025 TGCAGGAGATTTAGGATTGACTCA 59.529 41.667 0.00 0.00 0.00 3.41
53 54 5.045651 TGCAGGAGATTTAGGATTGACTCAA 60.046 40.000 0.00 0.00 0.00 3.02
54 55 6.060788 GCAGGAGATTTAGGATTGACTCAAT 58.939 40.000 3.80 3.80 36.72 2.57
55 56 6.545298 GCAGGAGATTTAGGATTGACTCAATT 59.455 38.462 5.73 0.00 33.90 2.32
56 57 7.067981 GCAGGAGATTTAGGATTGACTCAATTT 59.932 37.037 5.73 1.29 33.90 1.82
57 58 8.619546 CAGGAGATTTAGGATTGACTCAATTTC 58.380 37.037 5.73 2.62 33.90 2.17
58 59 8.555729 AGGAGATTTAGGATTGACTCAATTTCT 58.444 33.333 5.73 9.04 33.90 2.52
59 60 9.838339 GGAGATTTAGGATTGACTCAATTTCTA 57.162 33.333 5.73 8.21 33.90 2.10
106 107 9.657419 AATAAAAAGGCTCAGGATAAACAAATG 57.343 29.630 0.00 0.00 0.00 2.32
107 108 6.916360 AAAAGGCTCAGGATAAACAAATGA 57.084 33.333 0.00 0.00 0.00 2.57
108 109 7.486407 AAAAGGCTCAGGATAAACAAATGAT 57.514 32.000 0.00 0.00 0.00 2.45
109 110 8.593945 AAAAGGCTCAGGATAAACAAATGATA 57.406 30.769 0.00 0.00 0.00 2.15
110 111 8.593945 AAAGGCTCAGGATAAACAAATGATAA 57.406 30.769 0.00 0.00 0.00 1.75
111 112 8.593945 AAGGCTCAGGATAAACAAATGATAAA 57.406 30.769 0.00 0.00 0.00 1.40
112 113 8.593945 AGGCTCAGGATAAACAAATGATAAAA 57.406 30.769 0.00 0.00 0.00 1.52
113 114 9.034800 AGGCTCAGGATAAACAAATGATAAAAA 57.965 29.630 0.00 0.00 0.00 1.94
136 137 6.935741 AAGAAAAATAACACAAAAAGGCCC 57.064 33.333 0.00 0.00 0.00 5.80
137 138 5.995446 AGAAAAATAACACAAAAAGGCCCA 58.005 33.333 0.00 0.00 0.00 5.36
138 139 6.054941 AGAAAAATAACACAAAAAGGCCCAG 58.945 36.000 0.00 0.00 0.00 4.45
139 140 5.622346 AAAATAACACAAAAAGGCCCAGA 57.378 34.783 0.00 0.00 0.00 3.86
140 141 4.600692 AATAACACAAAAAGGCCCAGAC 57.399 40.909 0.00 0.00 0.00 3.51
141 142 1.119684 AACACAAAAAGGCCCAGACC 58.880 50.000 0.00 0.00 0.00 3.85
142 143 0.261696 ACACAAAAAGGCCCAGACCT 59.738 50.000 0.00 0.00 43.91 3.85
143 144 0.675633 CACAAAAAGGCCCAGACCTG 59.324 55.000 0.00 0.00 39.93 4.00
144 145 0.555769 ACAAAAAGGCCCAGACCTGA 59.444 50.000 0.00 0.00 39.93 3.86
145 146 1.063266 ACAAAAAGGCCCAGACCTGAA 60.063 47.619 0.00 0.00 39.93 3.02
146 147 2.038659 CAAAAAGGCCCAGACCTGAAA 58.961 47.619 0.00 0.00 39.93 2.69
147 148 2.433970 CAAAAAGGCCCAGACCTGAAAA 59.566 45.455 0.00 0.00 39.93 2.29
148 149 2.470057 AAAGGCCCAGACCTGAAAAA 57.530 45.000 0.00 0.00 39.93 1.94
166 167 2.229675 AAAAGCAGAACAAAGGCAGC 57.770 45.000 0.00 0.00 0.00 5.25
167 168 0.031178 AAAGCAGAACAAAGGCAGCG 59.969 50.000 0.00 0.00 0.00 5.18
168 169 1.799258 AAGCAGAACAAAGGCAGCGG 61.799 55.000 0.00 0.00 0.00 5.52
169 170 2.956987 CAGAACAAAGGCAGCGGG 59.043 61.111 0.00 0.00 0.00 6.13
170 171 2.282462 AGAACAAAGGCAGCGGGG 60.282 61.111 0.00 0.00 0.00 5.73
171 172 3.373565 GAACAAAGGCAGCGGGGG 61.374 66.667 0.00 0.00 0.00 5.40
188 189 2.866872 GGCACCATCGGATTTGACA 58.133 52.632 1.37 0.00 0.00 3.58
189 190 1.173043 GGCACCATCGGATTTGACAA 58.827 50.000 1.37 0.00 0.00 3.18
190 191 1.133025 GGCACCATCGGATTTGACAAG 59.867 52.381 1.37 0.00 0.00 3.16
191 192 2.083774 GCACCATCGGATTTGACAAGA 58.916 47.619 1.37 0.00 0.00 3.02
192 193 2.684881 GCACCATCGGATTTGACAAGAT 59.315 45.455 1.37 0.00 0.00 2.40
193 194 3.876914 GCACCATCGGATTTGACAAGATA 59.123 43.478 1.37 0.00 0.00 1.98
194 195 4.335315 GCACCATCGGATTTGACAAGATAA 59.665 41.667 1.37 0.00 0.00 1.75
195 196 5.163663 GCACCATCGGATTTGACAAGATAAA 60.164 40.000 1.37 0.00 0.00 1.40
196 197 6.624861 GCACCATCGGATTTGACAAGATAAAA 60.625 38.462 1.37 0.00 0.00 1.52
197 198 7.312154 CACCATCGGATTTGACAAGATAAAAA 58.688 34.615 0.00 0.00 0.00 1.94
215 216 1.949799 AAAACAAGCCCATATGCCCA 58.050 45.000 0.00 0.00 0.00 5.36
216 217 1.194218 AAACAAGCCCATATGCCCAC 58.806 50.000 0.00 0.00 0.00 4.61
217 218 1.037030 AACAAGCCCATATGCCCACG 61.037 55.000 0.00 0.00 0.00 4.94
218 219 1.152984 CAAGCCCATATGCCCACGA 60.153 57.895 0.00 0.00 0.00 4.35
219 220 0.751277 CAAGCCCATATGCCCACGAA 60.751 55.000 0.00 0.00 0.00 3.85
220 221 0.466189 AAGCCCATATGCCCACGAAG 60.466 55.000 0.00 0.00 0.00 3.79
221 222 1.898574 GCCCATATGCCCACGAAGG 60.899 63.158 0.00 0.00 37.03 3.46
229 230 2.358737 CCCACGAAGGCTGACCAC 60.359 66.667 0.00 0.00 39.06 4.16
230 231 2.743718 CCACGAAGGCTGACCACT 59.256 61.111 0.00 0.00 39.06 4.00
231 232 1.669115 CCACGAAGGCTGACCACTG 60.669 63.158 0.00 0.00 39.06 3.66
232 233 2.031163 ACGAAGGCTGACCACTGC 59.969 61.111 0.00 0.00 39.06 4.40
233 234 3.114616 CGAAGGCTGACCACTGCG 61.115 66.667 0.00 0.00 40.93 5.18
234 235 2.031163 GAAGGCTGACCACTGCGT 59.969 61.111 0.00 0.00 40.93 5.24
235 236 2.281070 AAGGCTGACCACTGCGTG 60.281 61.111 0.00 2.27 40.93 5.34
236 237 2.996168 GAAGGCTGACCACTGCGTGT 62.996 60.000 7.68 0.00 40.93 4.49
237 238 3.349006 GGCTGACCACTGCGTGTG 61.349 66.667 7.68 5.50 45.80 3.82
248 249 3.078594 ACTGCGTGTGATTGGAAAAAC 57.921 42.857 0.00 0.00 0.00 2.43
249 250 2.425312 ACTGCGTGTGATTGGAAAAACA 59.575 40.909 0.00 0.00 0.00 2.83
250 251 3.044986 CTGCGTGTGATTGGAAAAACAG 58.955 45.455 0.00 0.00 28.69 3.16
251 252 2.223688 TGCGTGTGATTGGAAAAACAGG 60.224 45.455 0.00 0.00 36.23 4.00
252 253 2.393764 CGTGTGATTGGAAAAACAGGC 58.606 47.619 0.00 0.00 29.77 4.85
253 254 2.034558 CGTGTGATTGGAAAAACAGGCT 59.965 45.455 0.00 0.00 29.77 4.58
254 255 3.252215 CGTGTGATTGGAAAAACAGGCTA 59.748 43.478 0.00 0.00 29.77 3.93
255 256 4.613622 CGTGTGATTGGAAAAACAGGCTAG 60.614 45.833 0.00 0.00 29.77 3.42
256 257 4.518970 GTGTGATTGGAAAAACAGGCTAGA 59.481 41.667 0.00 0.00 28.69 2.43
257 258 4.761739 TGTGATTGGAAAAACAGGCTAGAG 59.238 41.667 0.00 0.00 0.00 2.43
258 259 4.156739 GTGATTGGAAAAACAGGCTAGAGG 59.843 45.833 0.00 0.00 0.00 3.69
259 260 2.879103 TGGAAAAACAGGCTAGAGGG 57.121 50.000 0.00 0.00 0.00 4.30
260 261 2.344592 TGGAAAAACAGGCTAGAGGGA 58.655 47.619 0.00 0.00 0.00 4.20
261 262 2.039879 TGGAAAAACAGGCTAGAGGGAC 59.960 50.000 0.00 0.00 0.00 4.46
262 263 2.039879 GGAAAAACAGGCTAGAGGGACA 59.960 50.000 0.00 0.00 0.00 4.02
263 264 2.861147 AAAACAGGCTAGAGGGACAC 57.139 50.000 0.00 0.00 0.00 3.67
264 265 2.031495 AAACAGGCTAGAGGGACACT 57.969 50.000 0.00 0.00 0.00 3.55
265 266 2.921834 AACAGGCTAGAGGGACACTA 57.078 50.000 0.00 0.00 0.00 2.74
271 272 0.938713 CTAGAGGGACACTAGCGACG 59.061 60.000 0.00 0.00 42.15 5.12
272 273 0.463295 TAGAGGGACACTAGCGACGG 60.463 60.000 0.00 0.00 0.00 4.79
273 274 2.754658 AGGGACACTAGCGACGGG 60.755 66.667 0.00 0.00 0.00 5.28
274 275 2.753043 GGGACACTAGCGACGGGA 60.753 66.667 0.00 0.00 0.00 5.14
275 276 2.345760 GGGACACTAGCGACGGGAA 61.346 63.158 0.00 0.00 0.00 3.97
276 277 1.588082 GGACACTAGCGACGGGAAA 59.412 57.895 0.00 0.00 0.00 3.13
277 278 0.735287 GGACACTAGCGACGGGAAAC 60.735 60.000 0.00 0.00 0.00 2.78
278 279 0.038892 GACACTAGCGACGGGAAACA 60.039 55.000 0.00 0.00 0.00 2.83
279 280 0.319297 ACACTAGCGACGGGAAACAC 60.319 55.000 0.00 0.00 0.00 3.32
280 281 0.319211 CACTAGCGACGGGAAACACA 60.319 55.000 0.00 0.00 0.00 3.72
281 282 0.606604 ACTAGCGACGGGAAACACAT 59.393 50.000 0.00 0.00 0.00 3.21
282 283 1.278238 CTAGCGACGGGAAACACATC 58.722 55.000 0.00 0.00 0.00 3.06
283 284 0.457166 TAGCGACGGGAAACACATCG 60.457 55.000 0.00 0.00 34.69 3.84
284 285 1.735198 GCGACGGGAAACACATCGA 60.735 57.895 0.00 0.00 33.78 3.59
285 286 1.952266 GCGACGGGAAACACATCGAC 61.952 60.000 0.00 0.00 33.78 4.20
286 287 0.665068 CGACGGGAAACACATCGACA 60.665 55.000 0.00 0.00 33.78 4.35
287 288 1.504359 GACGGGAAACACATCGACAA 58.496 50.000 0.00 0.00 0.00 3.18
288 289 1.193874 GACGGGAAACACATCGACAAC 59.806 52.381 0.00 0.00 0.00 3.32
289 290 1.222300 CGGGAAACACATCGACAACA 58.778 50.000 0.00 0.00 0.00 3.33
290 291 1.070175 CGGGAAACACATCGACAACAC 60.070 52.381 0.00 0.00 0.00 3.32
291 292 1.944024 GGGAAACACATCGACAACACA 59.056 47.619 0.00 0.00 0.00 3.72
292 293 2.356382 GGGAAACACATCGACAACACAA 59.644 45.455 0.00 0.00 0.00 3.33
293 294 3.181495 GGGAAACACATCGACAACACAAA 60.181 43.478 0.00 0.00 0.00 2.83
294 295 3.789224 GGAAACACATCGACAACACAAAC 59.211 43.478 0.00 0.00 0.00 2.93
295 296 2.730183 ACACATCGACAACACAAACG 57.270 45.000 0.00 0.00 0.00 3.60
296 297 2.272678 ACACATCGACAACACAAACGA 58.727 42.857 0.00 0.00 39.01 3.85
297 298 2.673862 ACACATCGACAACACAAACGAA 59.326 40.909 0.00 0.00 38.22 3.85
298 299 3.125487 ACACATCGACAACACAAACGAAA 59.875 39.130 0.00 0.00 38.22 3.46
299 300 4.092120 CACATCGACAACACAAACGAAAA 58.908 39.130 0.00 0.00 38.22 2.29
300 301 4.202158 CACATCGACAACACAAACGAAAAG 59.798 41.667 0.00 0.00 38.22 2.27
301 302 4.093703 ACATCGACAACACAAACGAAAAGA 59.906 37.500 0.00 0.00 38.22 2.52
302 303 4.665281 TCGACAACACAAACGAAAAGAA 57.335 36.364 0.00 0.00 0.00 2.52
303 304 4.396519 TCGACAACACAAACGAAAAGAAC 58.603 39.130 0.00 0.00 0.00 3.01
304 305 4.152759 TCGACAACACAAACGAAAAGAACT 59.847 37.500 0.00 0.00 0.00 3.01
305 306 4.849383 CGACAACACAAACGAAAAGAACTT 59.151 37.500 0.00 0.00 0.00 2.66
306 307 5.341196 CGACAACACAAACGAAAAGAACTTT 59.659 36.000 0.00 0.00 0.00 2.66
307 308 6.446659 ACAACACAAACGAAAAGAACTTTG 57.553 33.333 0.45 0.00 32.36 2.77
308 309 5.107645 ACAACACAAACGAAAAGAACTTTGC 60.108 36.000 0.45 0.00 32.36 3.68
309 310 4.551388 ACACAAACGAAAAGAACTTTGCA 58.449 34.783 6.17 0.00 32.36 4.08
310 311 4.384547 ACACAAACGAAAAGAACTTTGCAC 59.615 37.500 6.17 0.00 32.36 4.57
311 312 3.606346 ACAAACGAAAAGAACTTTGCACG 59.394 39.130 6.17 11.11 32.36 5.34
312 313 3.750639 AACGAAAAGAACTTTGCACGA 57.249 38.095 19.18 0.00 32.36 4.35
313 314 3.750639 ACGAAAAGAACTTTGCACGAA 57.249 38.095 19.18 0.00 32.36 3.85
314 315 4.287238 ACGAAAAGAACTTTGCACGAAT 57.713 36.364 19.18 0.00 32.36 3.34
315 316 4.279659 ACGAAAAGAACTTTGCACGAATC 58.720 39.130 19.18 6.08 32.36 2.52
316 317 4.035208 ACGAAAAGAACTTTGCACGAATCT 59.965 37.500 19.18 0.00 32.36 2.40
317 318 4.970003 CGAAAAGAACTTTGCACGAATCTT 59.030 37.500 6.17 0.00 32.36 2.40
318 319 6.133392 CGAAAAGAACTTTGCACGAATCTTA 58.867 36.000 6.17 0.00 32.36 2.10
319 320 6.085068 CGAAAAGAACTTTGCACGAATCTTAC 59.915 38.462 6.17 3.17 32.36 2.34
320 321 6.371809 AAAGAACTTTGCACGAATCTTACA 57.628 33.333 0.00 0.00 0.00 2.41
321 322 5.597813 AGAACTTTGCACGAATCTTACAG 57.402 39.130 0.00 0.00 0.00 2.74
322 323 3.813529 ACTTTGCACGAATCTTACAGC 57.186 42.857 0.00 0.00 0.00 4.40
323 324 3.403038 ACTTTGCACGAATCTTACAGCT 58.597 40.909 0.00 0.00 0.00 4.24
324 325 3.433615 ACTTTGCACGAATCTTACAGCTC 59.566 43.478 0.00 0.00 0.00 4.09
325 326 2.010145 TGCACGAATCTTACAGCTCC 57.990 50.000 0.00 0.00 0.00 4.70
326 327 1.550524 TGCACGAATCTTACAGCTCCT 59.449 47.619 0.00 0.00 0.00 3.69
327 328 2.028112 TGCACGAATCTTACAGCTCCTT 60.028 45.455 0.00 0.00 0.00 3.36
328 329 3.003480 GCACGAATCTTACAGCTCCTTT 58.997 45.455 0.00 0.00 0.00 3.11
329 330 4.181578 GCACGAATCTTACAGCTCCTTTA 58.818 43.478 0.00 0.00 0.00 1.85
330 331 4.811557 GCACGAATCTTACAGCTCCTTTAT 59.188 41.667 0.00 0.00 0.00 1.40
331 332 5.050702 GCACGAATCTTACAGCTCCTTTATC 60.051 44.000 0.00 0.00 0.00 1.75
332 333 6.042777 CACGAATCTTACAGCTCCTTTATCA 58.957 40.000 0.00 0.00 0.00 2.15
333 334 6.703607 CACGAATCTTACAGCTCCTTTATCAT 59.296 38.462 0.00 0.00 0.00 2.45
334 335 6.703607 ACGAATCTTACAGCTCCTTTATCATG 59.296 38.462 0.00 0.00 0.00 3.07
335 336 6.703607 CGAATCTTACAGCTCCTTTATCATGT 59.296 38.462 0.00 0.00 0.00 3.21
336 337 7.307042 CGAATCTTACAGCTCCTTTATCATGTG 60.307 40.741 0.00 0.00 0.00 3.21
337 338 5.674525 TCTTACAGCTCCTTTATCATGTGG 58.325 41.667 0.00 0.00 0.00 4.17
338 339 5.189736 TCTTACAGCTCCTTTATCATGTGGT 59.810 40.000 0.00 0.00 0.00 4.16
339 340 3.614092 ACAGCTCCTTTATCATGTGGTG 58.386 45.455 0.00 0.00 0.00 4.17
340 341 2.947652 CAGCTCCTTTATCATGTGGTGG 59.052 50.000 0.00 0.00 0.00 4.61
341 342 2.846206 AGCTCCTTTATCATGTGGTGGA 59.154 45.455 0.00 0.00 0.00 4.02
342 343 2.945668 GCTCCTTTATCATGTGGTGGAC 59.054 50.000 0.00 0.00 0.00 4.02
343 344 3.622206 GCTCCTTTATCATGTGGTGGACA 60.622 47.826 0.00 0.00 39.53 4.02
344 345 4.588899 CTCCTTTATCATGTGGTGGACAA 58.411 43.478 0.00 0.00 38.36 3.18
345 346 4.588899 TCCTTTATCATGTGGTGGACAAG 58.411 43.478 0.00 0.00 38.36 3.16
346 347 4.042809 TCCTTTATCATGTGGTGGACAAGT 59.957 41.667 0.00 0.00 38.36 3.16
347 348 4.766891 CCTTTATCATGTGGTGGACAAGTT 59.233 41.667 0.00 0.00 38.36 2.66
348 349 5.943416 CCTTTATCATGTGGTGGACAAGTTA 59.057 40.000 0.00 0.00 38.36 2.24
349 350 6.094048 CCTTTATCATGTGGTGGACAAGTTAG 59.906 42.308 0.00 0.00 38.36 2.34
350 351 4.908601 ATCATGTGGTGGACAAGTTAGA 57.091 40.909 0.00 0.00 38.36 2.10
351 352 4.908601 TCATGTGGTGGACAAGTTAGAT 57.091 40.909 0.00 0.00 38.36 1.98
352 353 4.578871 TCATGTGGTGGACAAGTTAGATG 58.421 43.478 0.00 0.00 38.36 2.90
353 354 4.041567 TCATGTGGTGGACAAGTTAGATGT 59.958 41.667 0.00 0.00 38.36 3.06
354 355 3.738982 TGTGGTGGACAAGTTAGATGTG 58.261 45.455 0.00 0.00 0.00 3.21
355 356 3.389656 TGTGGTGGACAAGTTAGATGTGA 59.610 43.478 0.00 0.00 0.00 3.58
356 357 3.746492 GTGGTGGACAAGTTAGATGTGAC 59.254 47.826 0.00 0.00 0.00 3.67
357 358 3.389656 TGGTGGACAAGTTAGATGTGACA 59.610 43.478 0.00 0.00 0.00 3.58
358 359 4.041567 TGGTGGACAAGTTAGATGTGACAT 59.958 41.667 0.00 0.00 0.00 3.06
359 360 5.247337 TGGTGGACAAGTTAGATGTGACATA 59.753 40.000 0.00 0.00 0.00 2.29
360 361 6.170506 GGTGGACAAGTTAGATGTGACATAA 58.829 40.000 0.00 0.00 0.00 1.90
361 362 6.092259 GGTGGACAAGTTAGATGTGACATAAC 59.908 42.308 0.00 0.15 0.00 1.89
362 363 6.874134 GTGGACAAGTTAGATGTGACATAACT 59.126 38.462 7.69 7.69 40.55 2.24
363 364 8.033038 GTGGACAAGTTAGATGTGACATAACTA 58.967 37.037 12.62 2.66 38.47 2.24
364 365 8.590204 TGGACAAGTTAGATGTGACATAACTAA 58.410 33.333 12.62 8.03 38.47 2.24
365 366 9.431887 GGACAAGTTAGATGTGACATAACTAAA 57.568 33.333 12.62 0.00 38.47 1.85
394 395 8.735303 CATCTAGATGTGAGTTAGTAAATCCG 57.265 38.462 22.42 0.00 34.23 4.18
395 396 7.876936 TCTAGATGTGAGTTAGTAAATCCGT 57.123 36.000 7.82 1.47 0.00 4.69
396 397 8.969260 TCTAGATGTGAGTTAGTAAATCCGTA 57.031 34.615 7.82 0.00 0.00 4.02
397 398 9.399797 TCTAGATGTGAGTTAGTAAATCCGTAA 57.600 33.333 7.82 0.00 0.00 3.18
398 399 9.666626 CTAGATGTGAGTTAGTAAATCCGTAAG 57.333 37.037 7.82 0.54 0.00 2.34
399 400 8.289939 AGATGTGAGTTAGTAAATCCGTAAGA 57.710 34.615 7.82 0.00 43.02 2.10
400 401 8.746530 AGATGTGAGTTAGTAAATCCGTAAGAA 58.253 33.333 7.82 0.00 43.02 2.52
401 402 9.530633 GATGTGAGTTAGTAAATCCGTAAGAAT 57.469 33.333 7.82 0.00 43.02 2.40
456 457 9.178758 AGATGATCAACCCTTAATTTGACTAAC 57.821 33.333 0.00 0.00 34.61 2.34
519 575 8.235226 GCGACACATAATAGAGTAACTATAGCA 58.765 37.037 0.00 0.00 40.49 3.49
531 587 0.320247 CTATAGCAGCCTTGGCTCCG 60.320 60.000 11.72 2.87 42.62 4.63
573 629 4.034394 CCGATTCATGTTCGTGTTCATCAT 59.966 41.667 15.90 0.00 34.85 2.45
578 634 9.340695 GATTCATGTTCGTGTTCATCATTTTTA 57.659 29.630 0.00 0.00 0.00 1.52
601 657 0.993251 CGTTGCAACGCACAGACATG 60.993 55.000 35.89 9.09 46.06 3.21
629 732 0.695122 CCCCATGGCCCCATTCAAAT 60.695 55.000 6.09 0.00 33.90 2.32
678 794 1.668826 TTGACAGGCCCTCCTACATT 58.331 50.000 0.00 0.00 41.93 2.71
684 800 3.332485 ACAGGCCCTCCTACATTAAACAA 59.668 43.478 0.00 0.00 41.93 2.83
689 805 7.004691 AGGCCCTCCTACATTAAACAATATTC 58.995 38.462 0.00 0.00 42.06 1.75
714 832 0.648958 GTATTTCTACGTGCACGGGC 59.351 55.000 39.21 17.40 44.95 6.13
803 921 3.301706 TCATTTCTTTAACAAACGCGCC 58.698 40.909 5.73 0.00 0.00 6.53
819 937 1.794222 GCCGACGAGAAACCCAATG 59.206 57.895 0.00 0.00 0.00 2.82
823 941 2.253414 GACGAGAAACCCAATGCCGC 62.253 60.000 0.00 0.00 0.00 6.53
912 1030 1.161843 AAATCCGCGACGAACCAAAT 58.838 45.000 8.23 0.00 0.00 2.32
966 1084 2.899975 TCTCCATCTCCATCTCCATCC 58.100 52.381 0.00 0.00 0.00 3.51
969 1087 1.907936 CCATCTCCATCTCCATCCTCC 59.092 57.143 0.00 0.00 0.00 4.30
975 1093 1.418334 CATCTCCATCCTCCGTTCCT 58.582 55.000 0.00 0.00 0.00 3.36
976 1094 2.598565 CATCTCCATCCTCCGTTCCTA 58.401 52.381 0.00 0.00 0.00 2.94
978 1096 2.877866 TCTCCATCCTCCGTTCCTATC 58.122 52.381 0.00 0.00 0.00 2.08
1023 1141 2.171940 CGAGACAGCAGCGCAAAC 59.828 61.111 11.47 0.00 0.00 2.93
1024 1142 2.558313 GAGACAGCAGCGCAAACC 59.442 61.111 11.47 0.00 0.00 3.27
1025 1143 2.970974 GAGACAGCAGCGCAAACCC 61.971 63.158 11.47 0.00 0.00 4.11
1026 1144 2.980233 GACAGCAGCGCAAACCCT 60.980 61.111 11.47 0.00 0.00 4.34
1027 1145 2.970974 GACAGCAGCGCAAACCCTC 61.971 63.158 11.47 0.00 0.00 4.30
1028 1146 3.741476 CAGCAGCGCAAACCCTCC 61.741 66.667 11.47 0.00 0.00 4.30
1368 1486 2.418628 TGCTTGTGCTAGCCGTTAAATC 59.581 45.455 13.29 0.00 40.49 2.17
1429 1549 2.202810 GTAGCTCTGCGGCCTCAC 60.203 66.667 0.00 0.00 0.00 3.51
1517 1637 4.805219 AGCTGCGGTTAGGTTTAATTTTG 58.195 39.130 0.00 0.00 0.00 2.44
1540 1660 4.440880 GAGATTCTGAGATTGGTCACTGG 58.559 47.826 0.00 0.00 0.00 4.00
1544 1664 4.437682 TCTGAGATTGGTCACTGGTTTT 57.562 40.909 0.00 0.00 0.00 2.43
1545 1665 4.136796 TCTGAGATTGGTCACTGGTTTTG 58.863 43.478 0.00 0.00 0.00 2.44
1546 1666 3.885297 CTGAGATTGGTCACTGGTTTTGT 59.115 43.478 0.00 0.00 0.00 2.83
1547 1667 4.277476 TGAGATTGGTCACTGGTTTTGTT 58.723 39.130 0.00 0.00 0.00 2.83
1583 1703 2.478539 GCTTGATTTGAGATTGGTCGCC 60.479 50.000 0.00 0.00 0.00 5.54
1596 1716 1.336440 TGGTCGCCAATTTTGTGTCTG 59.664 47.619 0.00 0.00 0.00 3.51
1604 1724 3.554752 CCAATTTTGTGTCTGCCCGAATT 60.555 43.478 0.00 0.00 0.00 2.17
1607 1727 4.695217 TTTTGTGTCTGCCCGAATTATC 57.305 40.909 0.00 0.00 0.00 1.75
1642 1762 6.403746 GCTTTATCCTTCAGGTTTAGCTTGTC 60.404 42.308 0.00 0.00 36.34 3.18
1716 1836 1.726248 TCGATTCATCACTGCGTGTTG 59.274 47.619 11.20 11.20 35.37 3.33
1757 1877 6.454848 CGAGAATCTCTGTAACTGTGCAATTC 60.455 42.308 8.77 0.00 0.00 2.17
1833 1953 6.015940 GGTAAATATACCTACGTACCTGCAGT 60.016 42.308 13.81 3.45 46.88 4.40
1834 1954 5.449107 AATATACCTACGTACCTGCAGTG 57.551 43.478 13.81 6.81 0.00 3.66
1870 1990 2.028165 GTCTTAGCGATCTTGCGTGTTC 59.972 50.000 0.00 0.00 40.67 3.18
1883 2003 1.525941 CGTGTTCGGGGTTTGGTTAT 58.474 50.000 0.00 0.00 0.00 1.89
1985 2105 4.078537 TGAGGATGCGAAAAATTGAAGGA 58.921 39.130 0.00 0.00 0.00 3.36
2071 2193 6.017109 TGTTGAACTAGCAAAAGGAGCTAAAG 60.017 38.462 0.00 0.00 43.39 1.85
2132 2254 6.177610 GGTACATCCATCCAGAGTTTTGTTA 58.822 40.000 0.00 0.00 35.97 2.41
2194 2316 2.148916 TGTAGTTTGTGCAGAGACCG 57.851 50.000 0.43 0.00 0.00 4.79
2252 2374 4.103357 GTGCATCAAATCAGATGTTGCTC 58.897 43.478 9.98 4.26 45.58 4.26
2265 2387 0.896226 GTTGCTCGAGGTAGAGGGTT 59.104 55.000 15.58 0.00 38.63 4.11
2396 2519 1.160137 GTTCCTTGCATCGTGCTTCT 58.840 50.000 10.54 0.00 45.31 2.85
2398 2521 1.136147 CCTTGCATCGTGCTTCTGC 59.864 57.895 10.54 0.00 45.31 4.26
2403 2526 1.134729 TGCATCGTGCTTCTGCTATCA 60.135 47.619 10.54 0.00 45.31 2.15
2540 2663 3.243367 CCAGGTATCTCTCTGAGAAAGCG 60.243 52.174 8.95 0.00 42.27 4.68
2587 2713 2.558359 GTGAGCTGGCAAAGGTACATTT 59.442 45.455 0.00 0.00 36.52 2.32
2696 2822 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
2704 2830 5.006358 CCGGAAATACTTGTCGTAGAAATGG 59.994 44.000 0.00 0.00 39.69 3.16
2749 2886 6.049955 TCCATTTCTCCGACAAGTATTTCT 57.950 37.500 0.00 0.00 0.00 2.52
2780 2917 7.562821 GGAGGGAGTAAGTAACTATGTTCCTTA 59.437 40.741 0.00 0.00 39.07 2.69
2828 2965 2.461300 TAGCCTACTCCAGCACTGAT 57.539 50.000 0.00 0.00 0.00 2.90
2846 2983 6.702282 GCACTGATACTATTTTGTACTCCCTC 59.298 42.308 0.00 0.00 0.00 4.30
2848 2985 6.040616 ACTGATACTATTTTGTACTCCCTCCG 59.959 42.308 0.00 0.00 0.00 4.63
2850 2987 7.062322 TGATACTATTTTGTACTCCCTCCGTA 58.938 38.462 0.00 0.00 0.00 4.02
2851 2988 7.560991 TGATACTATTTTGTACTCCCTCCGTAA 59.439 37.037 0.00 0.00 0.00 3.18
2852 2989 6.610075 ACTATTTTGTACTCCCTCCGTAAA 57.390 37.500 0.00 0.00 0.00 2.01
2853 2990 6.401394 ACTATTTTGTACTCCCTCCGTAAAC 58.599 40.000 0.00 0.00 0.00 2.01
2858 2995 5.999205 TGTACTCCCTCCGTAAACAAATA 57.001 39.130 0.00 0.00 0.00 1.40
2860 2997 7.658525 TGTACTCCCTCCGTAAACAAATATA 57.341 36.000 0.00 0.00 0.00 0.86
2861 2998 8.076910 TGTACTCCCTCCGTAAACAAATATAA 57.923 34.615 0.00 0.00 0.00 0.98
2863 3000 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
2864 3001 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
2865 3002 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
2866 3003 5.176958 CCCTCCGTAAACAAATATAAGAGCG 59.823 44.000 0.00 0.00 0.00 5.03
2867 3004 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
2871 3008 8.810427 TCCGTAAACAAATATAAGAGCGTTTAG 58.190 33.333 0.00 0.00 31.53 1.85
2877 3014 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
2885 3022 8.690680 AAGAGCGTTTAGATCACTAAAAGTAG 57.309 34.615 13.61 5.26 45.97 2.57
2900 3037 7.828712 ACTAAAAGTAGTGATCTAAACGCTCT 58.171 34.615 0.00 0.00 39.20 4.09
2901 3038 8.305317 ACTAAAAGTAGTGATCTAAACGCTCTT 58.695 33.333 0.00 0.00 39.20 2.85
2902 3039 9.784680 CTAAAAGTAGTGATCTAAACGCTCTTA 57.215 33.333 0.00 0.00 0.00 2.10
2918 3278 9.654663 AAACGCTCTTATATTTCTTTACAGAGT 57.345 29.630 0.00 0.00 30.86 3.24
3014 3375 0.690762 TGTAAGAACCCCTGGCAGAC 59.309 55.000 17.94 3.77 0.00 3.51
3044 3405 5.584551 ATTTAGAGTTTGACCCTTCACCT 57.415 39.130 0.00 0.00 0.00 4.00
3074 3435 9.635404 TCCATTTATTTTATACTTTCCGTCCAT 57.365 29.630 0.00 0.00 0.00 3.41
3137 3498 9.013490 GTCTGAAATATTTGCATGTTGACATAC 57.987 33.333 5.17 0.00 34.26 2.39
3185 3546 2.820059 TGCATATAAGCTCTCGTGGG 57.180 50.000 1.16 0.00 34.99 4.61
3212 3573 6.500751 TGGGACTTCTGTTTACTATCTTTCCT 59.499 38.462 0.00 0.00 0.00 3.36
3235 3596 9.303116 TCCTCTTGGTTGCAGTTAATTATTTTA 57.697 29.630 0.00 0.00 34.23 1.52
3417 3780 6.665992 TCGTACCTATCATCTATTTGCCTT 57.334 37.500 0.00 0.00 0.00 4.35
3419 3782 8.185506 TCGTACCTATCATCTATTTGCCTTTA 57.814 34.615 0.00 0.00 0.00 1.85
3434 3797 3.383185 TGCCTTTACCCTTTCACAGTTTG 59.617 43.478 0.00 0.00 0.00 2.93
3686 4049 8.275015 TCATTCTGTTGAAGTTGTTTTCTACA 57.725 30.769 3.74 3.74 39.37 2.74
3744 4118 7.568349 TCAGTTGCCTATATTCAATCTCTTGT 58.432 34.615 0.00 0.00 33.87 3.16
3765 4139 6.911250 TGTACATACTTGGAAGTCTCTCAA 57.089 37.500 0.00 0.00 40.37 3.02
3838 4212 5.039920 TGACTTGGCATATTATCAGCTGT 57.960 39.130 14.67 3.75 0.00 4.40
3861 4235 5.177327 GTGGATTTGTTGGCAAACATGTTAG 59.823 40.000 12.39 0.00 45.54 2.34
3916 4290 8.536340 AGAAGGACTATCGGTTAGTTAGAAAT 57.464 34.615 0.60 0.00 41.35 2.17
4036 4410 2.213499 CCATCCATGCTACGTTCCTTC 58.787 52.381 0.00 0.00 0.00 3.46
4054 4428 2.753043 ATGGCAAAGGCTCTGGCG 60.753 61.111 10.00 0.00 42.05 5.69
4159 4533 3.057946 GTCTGGTCTGCCTTTGTGATTTC 60.058 47.826 0.00 0.00 35.27 2.17
4254 4628 6.316390 CAGTTCTTATATTTTGCTCGGAAGGT 59.684 38.462 0.00 0.00 0.00 3.50
4335 4709 7.759489 AGGCACAGATGTTAAAGTAATCAAA 57.241 32.000 0.00 0.00 0.00 2.69
4355 4729 4.713792 AATGGAGTGATTCCCCTCATAC 57.286 45.455 0.00 0.00 46.19 2.39
4501 4875 3.091545 TCCATTCCAAGACCTTGCATTC 58.908 45.455 4.31 0.00 39.16 2.67
4726 5183 9.334693 GTGTTTGATCTGACTATTTGATTGAAC 57.665 33.333 0.00 0.00 0.00 3.18
4751 5208 5.692115 TTATACTCTTTGTCATGAGGGCA 57.308 39.130 0.00 0.00 34.84 5.36
4893 5352 9.729281 AGATTTCATTCACAGCCAATTATTTTT 57.271 25.926 0.00 0.00 0.00 1.94
4933 5392 3.056607 GGCCATTACAAGTTGCATGAAGT 60.057 43.478 14.52 0.00 0.00 3.01
5072 5534 2.489329 GTGCAATCTACACAATGTGGCT 59.511 45.455 18.37 0.00 37.94 4.75
5258 5720 5.939296 CCTTGGCCAAATTATGTTTGATGTT 59.061 36.000 20.91 0.00 0.00 2.71
5469 5932 3.375299 ACCGATTATGAGCAAGCTTTCAC 59.625 43.478 2.97 0.00 0.00 3.18
5492 5955 8.429641 TCACCTATGTAAGTTCCCTCAATATTC 58.570 37.037 0.00 0.00 0.00 1.75
5493 5956 8.210946 CACCTATGTAAGTTCCCTCAATATTCA 58.789 37.037 0.00 0.00 0.00 2.57
5609 6072 3.119814 GGTTCTAGCAAAGCTGTTAAGGC 60.120 47.826 1.04 0.00 40.10 4.35
5634 6097 4.349930 TGCTAACAATATAGGGAAGGGACC 59.650 45.833 0.00 0.00 0.00 4.46
5638 6101 1.645710 ATATAGGGAAGGGACCGCAG 58.354 55.000 0.00 0.00 0.00 5.18
5646 6109 3.434596 GGGAAGGGACCGCAGTATTATTT 60.435 47.826 0.00 0.00 0.00 1.40
5703 6166 4.737578 AGCTAACTATCGGGAGAACCATA 58.262 43.478 0.00 0.00 45.37 2.74
5751 6218 6.120812 GCTTAGCGTTTCACTGTTATTATCG 58.879 40.000 0.00 0.00 0.00 2.92
5756 6223 5.481472 CGTTTCACTGTTATTATCGCTGTC 58.519 41.667 0.00 0.00 0.00 3.51
5948 6441 4.092091 GCACTTCCGTATCTCTTTTGTCTG 59.908 45.833 0.00 0.00 0.00 3.51
5951 6444 6.866770 CACTTCCGTATCTCTTTTGTCTGTTA 59.133 38.462 0.00 0.00 0.00 2.41
5953 6446 8.095169 ACTTCCGTATCTCTTTTGTCTGTTAAT 58.905 33.333 0.00 0.00 0.00 1.40
6025 6523 2.631062 TCGGTCCTTGCTCACTCTTTTA 59.369 45.455 0.00 0.00 0.00 1.52
6055 6553 4.762251 GGAAGGGCTAAATTATTCGATGCT 59.238 41.667 0.00 0.00 0.00 3.79
6056 6554 5.241728 GGAAGGGCTAAATTATTCGATGCTT 59.758 40.000 0.00 0.00 0.00 3.91
6127 6625 1.270147 ACTGTCCGGTTTCCTCGAAAG 60.270 52.381 0.00 0.00 31.87 2.62
6156 6654 3.381908 ACTCTCTATGCCGAAGTTACAGG 59.618 47.826 0.00 0.00 0.00 4.00
6194 6692 3.275143 TCTCGAGCTCTAGTTCCTTCTG 58.725 50.000 14.38 0.00 0.00 3.02
6357 6862 4.319694 GGGCATTTTGTTGCATGTTCTTTC 60.320 41.667 0.00 0.00 44.59 2.62
6416 6921 1.134220 TCCCACAACAGTTGTCCAGAC 60.134 52.381 16.44 0.00 43.23 3.51
6458 6963 2.746412 TAACGCTGGCAGCACATGGT 62.746 55.000 35.94 23.30 42.58 3.55
6468 6988 2.632643 GCACATGGTTGCTCAGTCA 58.367 52.632 0.00 0.00 39.59 3.41
6469 6989 0.520404 GCACATGGTTGCTCAGTCAG 59.480 55.000 0.00 0.00 39.59 3.51
6484 7004 1.077716 TCAGCCAGTCTCGATCGGA 60.078 57.895 16.41 8.74 0.00 4.55
6544 7094 3.559242 GCGTACTCCGTACTTAGATGACT 59.441 47.826 3.07 0.00 36.93 3.41
6545 7095 4.552378 GCGTACTCCGTACTTAGATGACTG 60.552 50.000 3.07 0.00 36.93 3.51
6553 7103 5.236911 CCGTACTTAGATGACTGGAGTAGAC 59.763 48.000 0.00 0.00 31.69 2.59
6632 7186 7.623268 ACAAAGATTTTTATGCGTTGTCTTC 57.377 32.000 0.00 0.00 30.45 2.87
6645 7207 5.105756 TGCGTTGTCTTCTGAATGAGATCTA 60.106 40.000 0.00 0.00 0.00 1.98
6670 7232 1.012841 GCACTAAGCTGCCAGATGTC 58.987 55.000 0.00 0.00 41.15 3.06
6673 7235 3.341823 CACTAAGCTGCCAGATGTCTTT 58.658 45.455 0.00 0.00 0.00 2.52
6675 7237 4.006319 ACTAAGCTGCCAGATGTCTTTTC 58.994 43.478 0.00 0.00 0.00 2.29
6754 7320 3.429135 GGAACCCTCGTAGCTTAAGTCTG 60.429 52.174 4.02 0.00 0.00 3.51
6755 7321 1.477295 ACCCTCGTAGCTTAAGTCTGC 59.523 52.381 4.02 4.86 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.898123 TGCTCCTATCCACCACTATCTTC 59.102 47.826 0.00 0.00 0.00 2.87
2 3 3.900601 CTGCTCCTATCCACCACTATCTT 59.099 47.826 0.00 0.00 0.00 2.40
4 5 3.501349 TCTGCTCCTATCCACCACTATC 58.499 50.000 0.00 0.00 0.00 2.08
5 6 3.619900 TCTGCTCCTATCCACCACTAT 57.380 47.619 0.00 0.00 0.00 2.12
6 7 3.300388 CTTCTGCTCCTATCCACCACTA 58.700 50.000 0.00 0.00 0.00 2.74
7 8 2.114616 CTTCTGCTCCTATCCACCACT 58.885 52.381 0.00 0.00 0.00 4.00
8 9 1.139853 CCTTCTGCTCCTATCCACCAC 59.860 57.143 0.00 0.00 0.00 4.16
9 10 1.273838 ACCTTCTGCTCCTATCCACCA 60.274 52.381 0.00 0.00 0.00 4.17
10 11 1.139853 CACCTTCTGCTCCTATCCACC 59.860 57.143 0.00 0.00 0.00 4.61
11 12 1.474143 GCACCTTCTGCTCCTATCCAC 60.474 57.143 0.00 0.00 43.33 4.02
12 13 0.833287 GCACCTTCTGCTCCTATCCA 59.167 55.000 0.00 0.00 43.33 3.41
13 14 3.696306 GCACCTTCTGCTCCTATCC 57.304 57.895 0.00 0.00 43.33 2.59
22 23 3.198635 TCCTAAATCTCCTGCACCTTCTG 59.801 47.826 0.00 0.00 0.00 3.02
23 24 3.454858 TCCTAAATCTCCTGCACCTTCT 58.545 45.455 0.00 0.00 0.00 2.85
24 25 3.914426 TCCTAAATCTCCTGCACCTTC 57.086 47.619 0.00 0.00 0.00 3.46
25 26 4.228210 TCAATCCTAAATCTCCTGCACCTT 59.772 41.667 0.00 0.00 0.00 3.50
26 27 3.782523 TCAATCCTAAATCTCCTGCACCT 59.217 43.478 0.00 0.00 0.00 4.00
27 28 3.879892 GTCAATCCTAAATCTCCTGCACC 59.120 47.826 0.00 0.00 0.00 5.01
28 29 4.775236 AGTCAATCCTAAATCTCCTGCAC 58.225 43.478 0.00 0.00 0.00 4.57
29 30 4.471025 TGAGTCAATCCTAAATCTCCTGCA 59.529 41.667 0.00 0.00 0.00 4.41
30 31 5.028549 TGAGTCAATCCTAAATCTCCTGC 57.971 43.478 0.00 0.00 0.00 4.85
31 32 8.517062 AAATTGAGTCAATCCTAAATCTCCTG 57.483 34.615 18.52 0.00 32.43 3.86
32 33 8.555729 AGAAATTGAGTCAATCCTAAATCTCCT 58.444 33.333 18.52 0.00 32.43 3.69
33 34 8.744568 AGAAATTGAGTCAATCCTAAATCTCC 57.255 34.615 18.52 0.00 32.43 3.71
80 81 9.657419 CATTTGTTTATCCTGAGCCTTTTTATT 57.343 29.630 0.00 0.00 0.00 1.40
81 82 9.034800 TCATTTGTTTATCCTGAGCCTTTTTAT 57.965 29.630 0.00 0.00 0.00 1.40
82 83 8.415950 TCATTTGTTTATCCTGAGCCTTTTTA 57.584 30.769 0.00 0.00 0.00 1.52
83 84 7.301868 TCATTTGTTTATCCTGAGCCTTTTT 57.698 32.000 0.00 0.00 0.00 1.94
84 85 6.916360 TCATTTGTTTATCCTGAGCCTTTT 57.084 33.333 0.00 0.00 0.00 2.27
85 86 8.593945 TTATCATTTGTTTATCCTGAGCCTTT 57.406 30.769 0.00 0.00 0.00 3.11
86 87 8.593945 TTTATCATTTGTTTATCCTGAGCCTT 57.406 30.769 0.00 0.00 0.00 4.35
87 88 8.593945 TTTTATCATTTGTTTATCCTGAGCCT 57.406 30.769 0.00 0.00 0.00 4.58
110 111 8.247562 GGGCCTTTTTGTGTTATTTTTCTTTTT 58.752 29.630 0.84 0.00 0.00 1.94
111 112 7.394641 TGGGCCTTTTTGTGTTATTTTTCTTTT 59.605 29.630 4.53 0.00 0.00 2.27
112 113 6.887002 TGGGCCTTTTTGTGTTATTTTTCTTT 59.113 30.769 4.53 0.00 0.00 2.52
113 114 6.418946 TGGGCCTTTTTGTGTTATTTTTCTT 58.581 32.000 4.53 0.00 0.00 2.52
114 115 5.995446 TGGGCCTTTTTGTGTTATTTTTCT 58.005 33.333 4.53 0.00 0.00 2.52
115 116 6.018262 GTCTGGGCCTTTTTGTGTTATTTTTC 60.018 38.462 4.53 0.00 0.00 2.29
116 117 5.820423 GTCTGGGCCTTTTTGTGTTATTTTT 59.180 36.000 4.53 0.00 0.00 1.94
117 118 5.364778 GTCTGGGCCTTTTTGTGTTATTTT 58.635 37.500 4.53 0.00 0.00 1.82
118 119 4.202315 GGTCTGGGCCTTTTTGTGTTATTT 60.202 41.667 4.53 0.00 0.00 1.40
119 120 3.323691 GGTCTGGGCCTTTTTGTGTTATT 59.676 43.478 4.53 0.00 0.00 1.40
120 121 2.897326 GGTCTGGGCCTTTTTGTGTTAT 59.103 45.455 4.53 0.00 0.00 1.89
121 122 2.091555 AGGTCTGGGCCTTTTTGTGTTA 60.092 45.455 4.53 0.00 34.71 2.41
122 123 1.119684 GGTCTGGGCCTTTTTGTGTT 58.880 50.000 4.53 0.00 0.00 3.32
123 124 0.261696 AGGTCTGGGCCTTTTTGTGT 59.738 50.000 4.53 0.00 34.71 3.72
124 125 0.675633 CAGGTCTGGGCCTTTTTGTG 59.324 55.000 4.53 0.00 36.58 3.33
125 126 0.555769 TCAGGTCTGGGCCTTTTTGT 59.444 50.000 4.53 0.00 36.58 2.83
126 127 1.703411 TTCAGGTCTGGGCCTTTTTG 58.297 50.000 4.53 0.00 36.58 2.44
127 128 2.470057 TTTCAGGTCTGGGCCTTTTT 57.530 45.000 4.53 0.00 36.58 1.94
128 129 2.470057 TTTTCAGGTCTGGGCCTTTT 57.530 45.000 4.53 0.00 36.58 2.27
129 130 2.470057 TTTTTCAGGTCTGGGCCTTT 57.530 45.000 4.53 0.00 36.58 3.11
146 147 2.554142 GCTGCCTTTGTTCTGCTTTTT 58.446 42.857 0.00 0.00 0.00 1.94
147 148 1.536709 CGCTGCCTTTGTTCTGCTTTT 60.537 47.619 0.00 0.00 0.00 2.27
148 149 0.031178 CGCTGCCTTTGTTCTGCTTT 59.969 50.000 0.00 0.00 0.00 3.51
149 150 1.656441 CGCTGCCTTTGTTCTGCTT 59.344 52.632 0.00 0.00 0.00 3.91
150 151 2.263741 CCGCTGCCTTTGTTCTGCT 61.264 57.895 0.00 0.00 0.00 4.24
151 152 2.256461 CCGCTGCCTTTGTTCTGC 59.744 61.111 0.00 0.00 0.00 4.26
152 153 2.629656 CCCCGCTGCCTTTGTTCTG 61.630 63.158 0.00 0.00 0.00 3.02
153 154 2.282462 CCCCGCTGCCTTTGTTCT 60.282 61.111 0.00 0.00 0.00 3.01
154 155 3.373565 CCCCCGCTGCCTTTGTTC 61.374 66.667 0.00 0.00 0.00 3.18
166 167 3.714487 AAATCCGATGGTGCCCCCG 62.714 63.158 0.00 0.00 35.15 5.73
167 168 2.127232 CAAATCCGATGGTGCCCCC 61.127 63.158 0.00 0.00 0.00 5.40
168 169 1.077068 TCAAATCCGATGGTGCCCC 60.077 57.895 0.00 0.00 0.00 5.80
169 170 0.679640 TGTCAAATCCGATGGTGCCC 60.680 55.000 0.00 0.00 0.00 5.36
170 171 1.133025 CTTGTCAAATCCGATGGTGCC 59.867 52.381 0.00 0.00 0.00 5.01
171 172 2.083774 TCTTGTCAAATCCGATGGTGC 58.916 47.619 0.00 0.00 0.00 5.01
172 173 6.435430 TTTATCTTGTCAAATCCGATGGTG 57.565 37.500 0.00 0.00 0.00 4.17
173 174 7.461182 TTTTTATCTTGTCAAATCCGATGGT 57.539 32.000 0.00 0.00 0.00 3.55
195 196 2.027285 GTGGGCATATGGGCTTGTTTTT 60.027 45.455 4.56 0.00 42.84 1.94
196 197 1.554617 GTGGGCATATGGGCTTGTTTT 59.445 47.619 4.56 0.00 42.84 2.43
197 198 1.194218 GTGGGCATATGGGCTTGTTT 58.806 50.000 4.56 0.00 42.84 2.83
198 199 1.037030 CGTGGGCATATGGGCTTGTT 61.037 55.000 4.56 0.00 42.84 2.83
199 200 1.453745 CGTGGGCATATGGGCTTGT 60.454 57.895 4.56 0.00 42.84 3.16
200 201 0.751277 TTCGTGGGCATATGGGCTTG 60.751 55.000 4.56 0.00 42.84 4.01
201 202 0.466189 CTTCGTGGGCATATGGGCTT 60.466 55.000 4.56 0.00 42.84 4.35
202 203 1.149174 CTTCGTGGGCATATGGGCT 59.851 57.895 4.56 0.00 42.84 5.19
203 204 1.898574 CCTTCGTGGGCATATGGGC 60.899 63.158 4.56 0.00 42.44 5.36
204 205 4.481195 CCTTCGTGGGCATATGGG 57.519 61.111 4.56 0.00 0.00 4.00
212 213 2.358737 GTGGTCAGCCTTCGTGGG 60.359 66.667 0.05 0.00 36.00 4.61
213 214 1.669115 CAGTGGTCAGCCTTCGTGG 60.669 63.158 0.00 0.00 39.35 4.94
214 215 2.320587 GCAGTGGTCAGCCTTCGTG 61.321 63.158 0.00 0.00 35.27 4.35
215 216 2.031163 GCAGTGGTCAGCCTTCGT 59.969 61.111 0.00 0.00 35.27 3.85
216 217 3.114616 CGCAGTGGTCAGCCTTCG 61.115 66.667 0.00 0.00 35.27 3.79
217 218 2.031163 ACGCAGTGGTCAGCCTTC 59.969 61.111 0.00 0.00 42.51 3.46
229 230 3.044986 CTGTTTTTCCAATCACACGCAG 58.955 45.455 0.00 0.00 0.00 5.18
230 231 2.223688 CCTGTTTTTCCAATCACACGCA 60.224 45.455 0.00 0.00 0.00 5.24
231 232 2.393764 CCTGTTTTTCCAATCACACGC 58.606 47.619 0.00 0.00 0.00 5.34
232 233 2.034558 AGCCTGTTTTTCCAATCACACG 59.965 45.455 0.00 0.00 0.00 4.49
233 234 3.733443 AGCCTGTTTTTCCAATCACAC 57.267 42.857 0.00 0.00 0.00 3.82
234 235 4.724399 TCTAGCCTGTTTTTCCAATCACA 58.276 39.130 0.00 0.00 0.00 3.58
235 236 4.156739 CCTCTAGCCTGTTTTTCCAATCAC 59.843 45.833 0.00 0.00 0.00 3.06
236 237 4.335416 CCTCTAGCCTGTTTTTCCAATCA 58.665 43.478 0.00 0.00 0.00 2.57
237 238 3.696548 CCCTCTAGCCTGTTTTTCCAATC 59.303 47.826 0.00 0.00 0.00 2.67
238 239 3.333680 TCCCTCTAGCCTGTTTTTCCAAT 59.666 43.478 0.00 0.00 0.00 3.16
239 240 2.714250 TCCCTCTAGCCTGTTTTTCCAA 59.286 45.455 0.00 0.00 0.00 3.53
240 241 2.039879 GTCCCTCTAGCCTGTTTTTCCA 59.960 50.000 0.00 0.00 0.00 3.53
241 242 2.039879 TGTCCCTCTAGCCTGTTTTTCC 59.960 50.000 0.00 0.00 0.00 3.13
242 243 3.075148 GTGTCCCTCTAGCCTGTTTTTC 58.925 50.000 0.00 0.00 0.00 2.29
243 244 2.711547 AGTGTCCCTCTAGCCTGTTTTT 59.288 45.455 0.00 0.00 0.00 1.94
244 245 2.339769 AGTGTCCCTCTAGCCTGTTTT 58.660 47.619 0.00 0.00 0.00 2.43
245 246 2.031495 AGTGTCCCTCTAGCCTGTTT 57.969 50.000 0.00 0.00 0.00 2.83
246 247 2.741145 CTAGTGTCCCTCTAGCCTGTT 58.259 52.381 0.00 0.00 0.00 3.16
247 248 2.445682 CTAGTGTCCCTCTAGCCTGT 57.554 55.000 0.00 0.00 0.00 4.00
252 253 0.938713 CGTCGCTAGTGTCCCTCTAG 59.061 60.000 2.66 0.00 38.22 2.43
253 254 0.463295 CCGTCGCTAGTGTCCCTCTA 60.463 60.000 2.66 0.00 0.00 2.43
254 255 1.749638 CCGTCGCTAGTGTCCCTCT 60.750 63.158 2.66 0.00 0.00 3.69
255 256 2.772691 CCCGTCGCTAGTGTCCCTC 61.773 68.421 2.66 0.00 0.00 4.30
256 257 2.754658 CCCGTCGCTAGTGTCCCT 60.755 66.667 2.66 0.00 0.00 4.20
257 258 1.880819 TTTCCCGTCGCTAGTGTCCC 61.881 60.000 2.66 0.00 0.00 4.46
258 259 0.735287 GTTTCCCGTCGCTAGTGTCC 60.735 60.000 2.66 0.00 0.00 4.02
259 260 0.038892 TGTTTCCCGTCGCTAGTGTC 60.039 55.000 2.66 0.00 0.00 3.67
260 261 0.319297 GTGTTTCCCGTCGCTAGTGT 60.319 55.000 2.66 0.00 0.00 3.55
261 262 0.319211 TGTGTTTCCCGTCGCTAGTG 60.319 55.000 0.00 0.00 0.00 2.74
262 263 0.606604 ATGTGTTTCCCGTCGCTAGT 59.393 50.000 0.00 0.00 0.00 2.57
263 264 1.278238 GATGTGTTTCCCGTCGCTAG 58.722 55.000 0.00 0.00 0.00 3.42
264 265 0.457166 CGATGTGTTTCCCGTCGCTA 60.457 55.000 0.00 0.00 34.92 4.26
265 266 1.736645 CGATGTGTTTCCCGTCGCT 60.737 57.895 0.00 0.00 34.92 4.93
266 267 1.735198 TCGATGTGTTTCCCGTCGC 60.735 57.895 0.00 0.00 40.30 5.19
267 268 0.665068 TGTCGATGTGTTTCCCGTCG 60.665 55.000 0.00 0.00 41.50 5.12
268 269 1.193874 GTTGTCGATGTGTTTCCCGTC 59.806 52.381 0.00 0.00 0.00 4.79
269 270 1.223187 GTTGTCGATGTGTTTCCCGT 58.777 50.000 0.00 0.00 0.00 5.28
270 271 1.070175 GTGTTGTCGATGTGTTTCCCG 60.070 52.381 0.00 0.00 0.00 5.14
271 272 1.944024 TGTGTTGTCGATGTGTTTCCC 59.056 47.619 0.00 0.00 0.00 3.97
272 273 3.684103 TTGTGTTGTCGATGTGTTTCC 57.316 42.857 0.00 0.00 0.00 3.13
273 274 3.477090 CGTTTGTGTTGTCGATGTGTTTC 59.523 43.478 0.00 0.00 0.00 2.78
274 275 3.125487 TCGTTTGTGTTGTCGATGTGTTT 59.875 39.130 0.00 0.00 0.00 2.83
275 276 2.673862 TCGTTTGTGTTGTCGATGTGTT 59.326 40.909 0.00 0.00 0.00 3.32
276 277 2.272678 TCGTTTGTGTTGTCGATGTGT 58.727 42.857 0.00 0.00 0.00 3.72
277 278 3.311788 TTCGTTTGTGTTGTCGATGTG 57.688 42.857 0.00 0.00 32.54 3.21
278 279 4.093703 TCTTTTCGTTTGTGTTGTCGATGT 59.906 37.500 0.00 0.00 32.54 3.06
279 280 4.583426 TCTTTTCGTTTGTGTTGTCGATG 58.417 39.130 0.00 0.00 32.54 3.84
280 281 4.868450 TCTTTTCGTTTGTGTTGTCGAT 57.132 36.364 0.00 0.00 32.54 3.59
281 282 4.152759 AGTTCTTTTCGTTTGTGTTGTCGA 59.847 37.500 0.00 0.00 0.00 4.20
282 283 4.399978 AGTTCTTTTCGTTTGTGTTGTCG 58.600 39.130 0.00 0.00 0.00 4.35
283 284 6.513317 CAAAGTTCTTTTCGTTTGTGTTGTC 58.487 36.000 0.00 0.00 0.00 3.18
284 285 5.107645 GCAAAGTTCTTTTCGTTTGTGTTGT 60.108 36.000 0.00 0.00 33.33 3.32
285 286 5.107683 TGCAAAGTTCTTTTCGTTTGTGTTG 60.108 36.000 0.00 0.00 33.33 3.33
286 287 4.985409 TGCAAAGTTCTTTTCGTTTGTGTT 59.015 33.333 0.00 0.00 33.33 3.32
287 288 4.384547 GTGCAAAGTTCTTTTCGTTTGTGT 59.615 37.500 0.00 0.00 33.33 3.72
288 289 4.488573 CGTGCAAAGTTCTTTTCGTTTGTG 60.489 41.667 0.00 0.00 33.33 3.33
289 290 3.606346 CGTGCAAAGTTCTTTTCGTTTGT 59.394 39.130 0.00 0.00 33.33 2.83
290 291 3.849145 TCGTGCAAAGTTCTTTTCGTTTG 59.151 39.130 0.00 0.00 33.81 2.93
291 292 4.086199 TCGTGCAAAGTTCTTTTCGTTT 57.914 36.364 0.00 0.00 0.00 3.60
292 293 3.750639 TCGTGCAAAGTTCTTTTCGTT 57.249 38.095 0.00 0.00 0.00 3.85
293 294 3.750639 TTCGTGCAAAGTTCTTTTCGT 57.249 38.095 0.00 0.00 0.00 3.85
294 295 4.527564 AGATTCGTGCAAAGTTCTTTTCG 58.472 39.130 0.00 2.61 0.00 3.46
295 296 6.910433 TGTAAGATTCGTGCAAAGTTCTTTTC 59.090 34.615 8.09 0.00 0.00 2.29
296 297 6.791303 TGTAAGATTCGTGCAAAGTTCTTTT 58.209 32.000 8.09 0.00 0.00 2.27
297 298 6.371809 TGTAAGATTCGTGCAAAGTTCTTT 57.628 33.333 8.09 0.00 0.00 2.52
298 299 5.560953 GCTGTAAGATTCGTGCAAAGTTCTT 60.561 40.000 0.00 0.00 34.07 2.52
299 300 4.083802 GCTGTAAGATTCGTGCAAAGTTCT 60.084 41.667 0.00 0.00 34.07 3.01
300 301 4.083802 AGCTGTAAGATTCGTGCAAAGTTC 60.084 41.667 0.00 0.00 34.07 3.01
301 302 3.815401 AGCTGTAAGATTCGTGCAAAGTT 59.185 39.130 0.00 0.00 34.07 2.66
302 303 3.403038 AGCTGTAAGATTCGTGCAAAGT 58.597 40.909 0.00 0.00 34.07 2.66
303 304 3.181516 GGAGCTGTAAGATTCGTGCAAAG 60.182 47.826 0.00 0.00 34.07 2.77
304 305 2.742053 GGAGCTGTAAGATTCGTGCAAA 59.258 45.455 0.00 0.00 34.07 3.68
305 306 2.028112 AGGAGCTGTAAGATTCGTGCAA 60.028 45.455 0.00 0.00 28.72 4.08
306 307 1.550524 AGGAGCTGTAAGATTCGTGCA 59.449 47.619 0.00 0.00 28.72 4.57
307 308 2.301577 AGGAGCTGTAAGATTCGTGC 57.698 50.000 0.00 0.00 28.72 5.34
308 309 6.042777 TGATAAAGGAGCTGTAAGATTCGTG 58.957 40.000 0.00 0.00 28.72 4.35
309 310 6.222038 TGATAAAGGAGCTGTAAGATTCGT 57.778 37.500 0.00 0.00 28.72 3.85
310 311 6.703607 ACATGATAAAGGAGCTGTAAGATTCG 59.296 38.462 0.00 0.00 28.72 3.34
311 312 7.041508 CCACATGATAAAGGAGCTGTAAGATTC 60.042 40.741 0.00 0.00 34.07 2.52
312 313 6.769822 CCACATGATAAAGGAGCTGTAAGATT 59.230 38.462 0.00 0.00 34.07 2.40
313 314 6.126652 ACCACATGATAAAGGAGCTGTAAGAT 60.127 38.462 0.00 0.00 34.07 2.40
314 315 5.189736 ACCACATGATAAAGGAGCTGTAAGA 59.810 40.000 0.00 0.00 34.07 2.10
315 316 5.295292 CACCACATGATAAAGGAGCTGTAAG 59.705 44.000 0.00 0.00 0.00 2.34
316 317 5.185454 CACCACATGATAAAGGAGCTGTAA 58.815 41.667 0.00 0.00 0.00 2.41
317 318 4.384098 CCACCACATGATAAAGGAGCTGTA 60.384 45.833 0.00 0.00 0.00 2.74
318 319 3.614092 CACCACATGATAAAGGAGCTGT 58.386 45.455 0.00 0.00 0.00 4.40
319 320 2.947652 CCACCACATGATAAAGGAGCTG 59.052 50.000 0.00 0.00 0.00 4.24
320 321 2.846206 TCCACCACATGATAAAGGAGCT 59.154 45.455 0.00 0.00 0.00 4.09
321 322 2.945668 GTCCACCACATGATAAAGGAGC 59.054 50.000 0.00 0.00 0.00 4.70
322 323 4.220693 TGTCCACCACATGATAAAGGAG 57.779 45.455 0.00 0.00 0.00 3.69
323 324 4.042809 ACTTGTCCACCACATGATAAAGGA 59.957 41.667 0.00 0.00 33.90 3.36
324 325 4.335416 ACTTGTCCACCACATGATAAAGG 58.665 43.478 0.00 0.00 33.90 3.11
325 326 5.964958 AACTTGTCCACCACATGATAAAG 57.035 39.130 0.00 0.00 33.90 1.85
326 327 6.774673 TCTAACTTGTCCACCACATGATAAA 58.225 36.000 0.00 0.00 33.90 1.40
327 328 6.367374 TCTAACTTGTCCACCACATGATAA 57.633 37.500 0.00 0.00 33.90 1.75
328 329 6.070251 ACATCTAACTTGTCCACCACATGATA 60.070 38.462 0.00 0.00 33.90 2.15
329 330 4.908601 TCTAACTTGTCCACCACATGAT 57.091 40.909 0.00 0.00 33.90 2.45
330 331 4.041567 ACATCTAACTTGTCCACCACATGA 59.958 41.667 0.00 0.00 33.90 3.07
331 332 4.154737 CACATCTAACTTGTCCACCACATG 59.845 45.833 0.00 0.00 33.90 3.21
332 333 4.041567 TCACATCTAACTTGTCCACCACAT 59.958 41.667 0.00 0.00 33.90 3.21
333 334 3.389656 TCACATCTAACTTGTCCACCACA 59.610 43.478 0.00 0.00 0.00 4.17
334 335 3.746492 GTCACATCTAACTTGTCCACCAC 59.254 47.826 0.00 0.00 0.00 4.16
335 336 3.389656 TGTCACATCTAACTTGTCCACCA 59.610 43.478 0.00 0.00 0.00 4.17
336 337 4.002906 TGTCACATCTAACTTGTCCACC 57.997 45.455 0.00 0.00 0.00 4.61
337 338 6.874134 AGTTATGTCACATCTAACTTGTCCAC 59.126 38.462 0.00 0.00 33.10 4.02
338 339 7.004555 AGTTATGTCACATCTAACTTGTCCA 57.995 36.000 0.00 0.00 33.10 4.02
339 340 8.997621 TTAGTTATGTCACATCTAACTTGTCC 57.002 34.615 10.56 0.00 37.07 4.02
369 370 8.353684 ACGGATTTACTAACTCACATCTAGATG 58.646 37.037 27.63 27.63 44.15 2.90
370 371 8.466617 ACGGATTTACTAACTCACATCTAGAT 57.533 34.615 0.00 0.00 0.00 1.98
371 372 7.876936 ACGGATTTACTAACTCACATCTAGA 57.123 36.000 0.00 0.00 0.00 2.43
372 373 9.666626 CTTACGGATTTACTAACTCACATCTAG 57.333 37.037 0.00 0.00 0.00 2.43
373 374 9.399797 TCTTACGGATTTACTAACTCACATCTA 57.600 33.333 0.00 0.00 0.00 1.98
374 375 8.289939 TCTTACGGATTTACTAACTCACATCT 57.710 34.615 0.00 0.00 0.00 2.90
375 376 8.922058 TTCTTACGGATTTACTAACTCACATC 57.078 34.615 0.00 0.00 0.00 3.06
389 390 9.322769 ACCAAGGTAGATATATTCTTACGGATT 57.677 33.333 0.00 0.00 35.79 3.01
390 391 8.896722 ACCAAGGTAGATATATTCTTACGGAT 57.103 34.615 0.00 0.00 35.79 4.18
391 392 8.716674 AACCAAGGTAGATATATTCTTACGGA 57.283 34.615 0.00 0.00 35.79 4.69
392 393 8.804204 AGAACCAAGGTAGATATATTCTTACGG 58.196 37.037 0.00 0.00 35.79 4.02
393 394 9.843334 GAGAACCAAGGTAGATATATTCTTACG 57.157 37.037 0.00 0.00 35.79 3.18
397 398 9.041354 GGATGAGAACCAAGGTAGATATATTCT 57.959 37.037 0.00 0.00 38.57 2.40
398 399 8.816894 TGGATGAGAACCAAGGTAGATATATTC 58.183 37.037 0.00 0.00 34.25 1.75
399 400 8.742125 TGGATGAGAACCAAGGTAGATATATT 57.258 34.615 0.00 0.00 34.25 1.28
400 401 8.766476 CATGGATGAGAACCAAGGTAGATATAT 58.234 37.037 0.00 0.00 40.93 0.86
401 402 7.310671 GCATGGATGAGAACCAAGGTAGATATA 60.311 40.741 0.00 0.00 40.93 0.86
454 455 9.044150 CACATAACATGAAAAGAACCATTTGTT 57.956 29.630 0.00 0.00 40.81 2.83
456 457 8.815141 TCACATAACATGAAAAGAACCATTTG 57.185 30.769 0.00 0.00 0.00 2.32
494 495 9.762062 CTGCTATAGTTACTCTATTATGTGTCG 57.238 37.037 0.84 0.00 39.70 4.35
495 496 9.562583 GCTGCTATAGTTACTCTATTATGTGTC 57.437 37.037 0.84 0.00 39.70 3.67
531 587 2.084546 GGTCAACTACATCCCTTGCAC 58.915 52.381 0.00 0.00 0.00 4.57
684 800 8.273557 GTGCACGTAGAAATACAATTCGAATAT 58.726 33.333 11.83 5.58 34.46 1.28
689 805 4.252902 CGTGCACGTAGAAATACAATTCG 58.747 43.478 30.50 0.00 32.95 3.34
714 832 3.627732 AGATGAGGAATGCGTACGTAG 57.372 47.619 17.90 0.00 0.00 3.51
803 921 1.794222 GGCATTGGGTTTCTCGTCG 59.206 57.895 0.00 0.00 0.00 5.12
847 965 2.604686 TGAGCTTCCGTGCCTCCT 60.605 61.111 0.00 0.00 0.00 3.69
854 972 1.663702 CGTTTCCGTGAGCTTCCGT 60.664 57.895 5.43 0.00 0.00 4.69
856 974 1.503818 TTGCGTTTCCGTGAGCTTCC 61.504 55.000 0.00 0.00 36.15 3.46
888 1006 2.349275 TGGTTCGTCGCGGATTTATTTC 59.651 45.455 6.13 0.00 0.00 2.17
892 1010 1.793258 TTTGGTTCGTCGCGGATTTA 58.207 45.000 6.13 0.00 0.00 1.40
912 1030 1.377202 GAGATGGGTCGCTTTGGCA 60.377 57.895 0.00 0.00 38.60 4.92
966 1084 0.467659 AGACGGGGATAGGAACGGAG 60.468 60.000 0.00 0.00 0.00 4.63
969 1087 2.039509 GGAGACGGGGATAGGAACG 58.960 63.158 0.00 0.00 0.00 3.95
1023 1141 4.179599 GGAGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
1024 1142 4.179599 GGGAGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1025 1143 4.179599 GGGGAGGGAGGGAGGGAG 62.180 77.778 0.00 0.00 0.00 4.30
1028 1146 4.825679 GTGGGGGAGGGAGGGAGG 62.826 77.778 0.00 0.00 0.00 4.30
1029 1147 4.825679 GGTGGGGGAGGGAGGGAG 62.826 77.778 0.00 0.00 0.00 4.30
1227 1345 1.062206 GTAGAGCTCGACGAACGGG 59.938 63.158 11.37 0.00 46.38 5.28
1307 1425 3.878667 GGGAGGATGGGGGAAGCG 61.879 72.222 0.00 0.00 0.00 4.68
1368 1486 1.227089 CGAGCAACAGATCTCCCGG 60.227 63.158 0.00 0.00 0.00 5.73
1429 1549 1.506493 GCAGCTATGATTCCACTCCG 58.494 55.000 0.00 0.00 0.00 4.63
1474 1594 6.591448 CAGCTACAACATCAGTGAACAATCTA 59.409 38.462 0.00 0.00 0.00 1.98
1481 1601 2.068519 CGCAGCTACAACATCAGTGAA 58.931 47.619 0.00 0.00 0.00 3.18
1517 1637 4.440880 CAGTGACCAATCTCAGAATCTCC 58.559 47.826 0.00 0.00 0.00 3.71
1540 1660 2.485266 AACCGCAGCTACAACAAAAC 57.515 45.000 0.00 0.00 0.00 2.43
1544 1664 0.672401 GCCTAACCGCAGCTACAACA 60.672 55.000 0.00 0.00 0.00 3.33
1545 1665 0.391263 AGCCTAACCGCAGCTACAAC 60.391 55.000 0.00 0.00 34.38 3.32
1546 1666 0.323629 AAGCCTAACCGCAGCTACAA 59.676 50.000 0.00 0.00 35.30 2.41
1547 1667 0.391130 CAAGCCTAACCGCAGCTACA 60.391 55.000 0.00 0.00 35.30 2.74
1583 1703 2.791383 TTCGGGCAGACACAAAATTG 57.209 45.000 0.00 0.00 0.00 2.32
1604 1724 3.077088 AGGATAAAGCCTAGTCCCCGATA 59.923 47.826 0.00 0.00 36.22 2.92
1607 1727 1.718280 AGGATAAAGCCTAGTCCCCG 58.282 55.000 0.00 0.00 36.22 5.73
1757 1877 9.499479 AAACCATGCAGAATATAGAAGAGTATG 57.501 33.333 0.00 0.00 0.00 2.39
1833 1953 1.372499 GACGCTAACCACTCGCACA 60.372 57.895 0.00 0.00 0.00 4.57
1834 1954 0.666577 AAGACGCTAACCACTCGCAC 60.667 55.000 0.00 0.00 0.00 5.34
1870 1990 1.889829 TCAAAGCATAACCAAACCCCG 59.110 47.619 0.00 0.00 0.00 5.73
1917 2037 5.289193 CACAATGCAAAACCTTCCATTATCG 59.711 40.000 0.00 0.00 0.00 2.92
2016 2138 7.639945 AGTAGTTTCAGAAGGTTCAATTTTCG 58.360 34.615 0.00 0.00 0.00 3.46
2221 2343 7.762615 ACATCTGATTTGATGCACTTAATTTGG 59.237 33.333 0.00 0.00 45.51 3.28
2252 2374 3.132289 TGCTGATAAAACCCTCTACCTCG 59.868 47.826 0.00 0.00 0.00 4.63
2347 2470 5.392703 CGCTAGTGACCTAGTGTTACAATGA 60.393 44.000 0.00 0.00 43.69 2.57
2371 2494 1.667724 CACGATGCAAGGAACTCCATC 59.332 52.381 0.00 0.00 38.49 3.51
2540 2663 0.671163 CACCACATGCCAATGTTGCC 60.671 55.000 0.00 0.00 44.94 4.52
2587 2713 5.477291 TGTGGAGTACAACAACCAAGAAAAA 59.523 36.000 0.00 0.00 36.06 1.94
2664 2790 0.957362 CCGGACGGAGGGAGTATTAC 59.043 60.000 4.40 0.00 37.50 1.89
2713 2850 6.616959 TCGGAGAAATGGATATGGATATGGAT 59.383 38.462 0.00 0.00 0.00 3.41
2714 2851 5.963865 TCGGAGAAATGGATATGGATATGGA 59.036 40.000 0.00 0.00 0.00 3.41
2715 2852 6.051717 GTCGGAGAAATGGATATGGATATGG 58.948 44.000 0.00 0.00 39.69 2.74
2716 2853 6.643388 TGTCGGAGAAATGGATATGGATATG 58.357 40.000 0.00 0.00 39.69 1.78
2717 2854 6.874278 TGTCGGAGAAATGGATATGGATAT 57.126 37.500 0.00 0.00 39.69 1.63
2718 2855 6.270000 ACTTGTCGGAGAAATGGATATGGATA 59.730 38.462 0.00 0.00 39.69 2.59
2719 2856 5.072329 ACTTGTCGGAGAAATGGATATGGAT 59.928 40.000 0.00 0.00 39.69 3.41
2720 2857 4.408921 ACTTGTCGGAGAAATGGATATGGA 59.591 41.667 0.00 0.00 39.69 3.41
2721 2858 4.708177 ACTTGTCGGAGAAATGGATATGG 58.292 43.478 0.00 0.00 39.69 2.74
2722 2859 7.969536 AATACTTGTCGGAGAAATGGATATG 57.030 36.000 0.00 0.00 39.69 1.78
2723 2860 8.432805 AGAAATACTTGTCGGAGAAATGGATAT 58.567 33.333 0.00 0.00 39.69 1.63
2724 2861 7.710907 CAGAAATACTTGTCGGAGAAATGGATA 59.289 37.037 0.00 0.00 39.69 2.59
2749 2886 2.042162 AGTTACTTACTCCCTCCGTCCA 59.958 50.000 0.00 0.00 28.23 4.02
2828 2965 7.178274 TGTTTACGGAGGGAGTACAAAATAGTA 59.822 37.037 0.00 0.00 0.00 1.82
2846 2983 8.810427 TCTAAACGCTCTTATATTTGTTTACGG 58.190 33.333 0.00 0.00 32.41 4.02
2851 2988 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
2860 2997 8.305317 ACTACTTTTAGTGATCTAAACGCTCTT 58.695 33.333 0.00 0.00 43.20 2.85
2861 2998 7.828712 ACTACTTTTAGTGATCTAAACGCTCT 58.171 34.615 0.00 0.00 43.20 4.09
2875 3012 7.828712 AGAGCGTTTAGATCACTACTTTTAGT 58.171 34.615 0.00 0.00 39.30 2.24
2876 3013 8.690680 AAGAGCGTTTAGATCACTACTTTTAG 57.309 34.615 0.00 0.00 37.82 1.85
2893 3030 9.088512 CACTCTGTAAAGAAATATAAGAGCGTT 57.911 33.333 0.00 0.00 0.00 4.84
2895 3032 8.858003 TCACTCTGTAAAGAAATATAAGAGCG 57.142 34.615 0.00 0.00 0.00 5.03
2896 3033 9.810545 ACTCACTCTGTAAAGAAATATAAGAGC 57.189 33.333 0.00 0.00 0.00 4.09
2906 3043 9.639601 CATGTGTATTACTCACTCTGTAAAGAA 57.360 33.333 0.93 0.00 36.83 2.52
2908 3045 7.492669 CCCATGTGTATTACTCACTCTGTAAAG 59.507 40.741 0.93 0.00 36.83 1.85
2909 3046 7.179516 TCCCATGTGTATTACTCACTCTGTAAA 59.820 37.037 0.93 0.00 36.83 2.01
2910 3047 6.666113 TCCCATGTGTATTACTCACTCTGTAA 59.334 38.462 0.93 0.00 36.83 2.41
2911 3048 6.096423 GTCCCATGTGTATTACTCACTCTGTA 59.904 42.308 0.93 0.00 36.83 2.74
2912 3049 5.023452 TCCCATGTGTATTACTCACTCTGT 58.977 41.667 0.93 0.00 36.83 3.41
2914 3051 5.127845 CAGTCCCATGTGTATTACTCACTCT 59.872 44.000 0.93 0.00 36.83 3.24
2918 3278 5.755409 AACAGTCCCATGTGTATTACTCA 57.245 39.130 1.40 1.40 32.52 3.41
2923 3283 5.505181 AGAGAAACAGTCCCATGTGTATT 57.495 39.130 0.00 0.00 32.52 1.89
2983 3344 8.656806 CCAGGGGTTCTTACATCTATACATTTA 58.343 37.037 0.00 0.00 0.00 1.40
3014 3375 7.703058 AGGGTCAAACTCTAAATTAATGTGG 57.297 36.000 0.00 0.00 0.00 4.17
3074 3435 2.434336 AGATTATGTAGAGGTTGCCGCA 59.566 45.455 0.00 0.00 0.00 5.69
3185 3546 7.496263 GGAAAGATAGTAAACAGAAGTCCCATC 59.504 40.741 0.00 0.00 0.00 3.51
3246 3607 7.721402 ACACCAGCATTTCACATAGTTAAAAA 58.279 30.769 0.00 0.00 0.00 1.94
3458 3821 5.008331 TCACATCTTCCGTCTAGTAACTGT 58.992 41.667 0.00 0.00 0.00 3.55
3579 3942 7.369607 TCACAATTGACATAGATGTGGTTTTG 58.630 34.615 13.59 2.20 41.95 2.44
3686 4049 7.443575 GCCTAGTCAGAACATAATGACAATGAT 59.556 37.037 7.94 0.00 46.63 2.45
3735 4109 8.140112 AGACTTCCAAGTATGTACAAGAGATT 57.860 34.615 0.00 0.00 39.88 2.40
3744 4118 6.911250 TGTTGAGAGACTTCCAAGTATGTA 57.089 37.500 0.00 0.00 39.88 2.29
3765 4139 9.911788 AATGAGGACTTAAACATAGAATGATGT 57.088 29.630 0.00 0.00 41.92 3.06
3838 4212 3.834489 ACATGTTTGCCAACAAATCCA 57.166 38.095 7.52 0.00 46.93 3.41
3916 4290 7.118723 AGTCATAAATTTGGCCAGAGATACAA 58.881 34.615 5.11 0.00 0.00 2.41
4036 4410 2.890371 GCCAGAGCCTTTGCCATG 59.110 61.111 0.00 0.00 38.69 3.66
4054 4428 4.039852 GGGAAGAGAGTATCCATTCCAGAC 59.960 50.000 7.78 0.00 46.55 3.51
4144 4518 3.374220 TTGCAGAAATCACAAAGGCAG 57.626 42.857 0.00 0.00 0.00 4.85
4159 4533 6.072618 AGTGAAGAACTGAAGATGATTTGCAG 60.073 38.462 0.00 0.00 37.88 4.41
4169 4543 3.641436 TGTGGCTAGTGAAGAACTGAAGA 59.359 43.478 0.00 0.00 40.26 2.87
4170 4544 3.743396 GTGTGGCTAGTGAAGAACTGAAG 59.257 47.826 0.00 0.00 40.26 3.02
4171 4545 3.494398 GGTGTGGCTAGTGAAGAACTGAA 60.494 47.826 0.00 0.00 40.26 3.02
4172 4546 2.037251 GGTGTGGCTAGTGAAGAACTGA 59.963 50.000 0.00 0.00 40.26 3.41
4173 4547 2.224281 TGGTGTGGCTAGTGAAGAACTG 60.224 50.000 0.00 0.00 40.26 3.16
4174 4548 2.047061 TGGTGTGGCTAGTGAAGAACT 58.953 47.619 0.00 0.00 43.40 3.01
4175 4549 2.543777 TGGTGTGGCTAGTGAAGAAC 57.456 50.000 0.00 0.00 0.00 3.01
4176 4550 3.788227 ATTGGTGTGGCTAGTGAAGAA 57.212 42.857 0.00 0.00 0.00 2.52
4335 4709 3.649981 CAGTATGAGGGGAATCACTCCAT 59.350 47.826 0.00 0.00 42.90 3.41
4355 4729 5.584649 TGAAGATAAAATGAAGGCGTACCAG 59.415 40.000 0.00 0.00 39.06 4.00
4528 4902 6.085555 TCATATCCGTCAGACAATCTTACC 57.914 41.667 0.41 0.00 0.00 2.85
4685 5142 7.290857 GATCAAACACTTGAGCTTCGTATTA 57.709 36.000 0.00 0.00 44.68 0.98
4726 5183 5.006746 GCCCTCATGACAAAGAGTATAAACG 59.993 44.000 0.00 0.00 0.00 3.60
4737 5194 5.999205 ATTGTATTTGCCCTCATGACAAA 57.001 34.783 11.15 11.15 37.66 2.83
4765 5222 9.056005 TGTAGCTTTGCGATATTAAATTCTGAT 57.944 29.630 0.00 0.00 0.00 2.90
4780 5237 7.985634 AAATAACCAAATATGTAGCTTTGCG 57.014 32.000 0.00 0.00 32.29 4.85
4824 5281 8.901793 GCAGAGAAGAAGATATCAAGGATTTTT 58.098 33.333 5.32 0.00 0.00 1.94
4825 5282 8.273605 AGCAGAGAAGAAGATATCAAGGATTTT 58.726 33.333 5.32 0.00 0.00 1.82
4895 5354 8.510358 TGTAATGGCCTGCAGGATATATATAT 57.490 34.615 37.21 14.89 37.39 0.86
5072 5534 2.494471 CAGGCTCTCATTTGAATTGGCA 59.506 45.455 0.00 0.00 0.00 4.92
5258 5720 5.105716 TCCTTCAACATTTTTCGGAACACAA 60.106 36.000 0.00 0.00 0.00 3.33
5324 5786 1.902918 TTGCCGTGCAGAAGCCAAT 60.903 52.632 0.00 0.00 40.61 3.16
5469 5932 9.057089 GTTGAATATTGAGGGAACTTACATAGG 57.943 37.037 0.00 0.00 44.43 2.57
5493 5956 9.639601 GGCATAAAAAGAAACAGCTAATAAGTT 57.360 29.630 0.00 0.00 0.00 2.66
5609 6072 4.039973 TCCCTTCCCTATATTGTTAGCACG 59.960 45.833 0.00 0.00 0.00 5.34
5703 6166 5.295045 CAGCAGCAAAGGTTCAAAAGAAAAT 59.705 36.000 0.00 0.00 0.00 1.82
5756 6223 7.393234 TGAATAGACCACAAAGTTCTTTATGGG 59.607 37.037 21.50 13.99 32.09 4.00
5827 6320 5.308014 ACACTGAACATAAATGCTGAGTCA 58.692 37.500 0.00 0.00 0.00 3.41
5953 6446 8.963725 AGCAAAATTATCTTCAAGATCATGTCA 58.036 29.630 2.18 0.00 36.20 3.58
6025 6523 7.123547 TCGAATAATTTAGCCCTTCCAACAAAT 59.876 33.333 0.00 0.00 0.00 2.32
6127 6625 0.811616 CGGCATAGAGAGTGGGTTGC 60.812 60.000 0.00 0.00 0.00 4.17
6156 6654 3.059188 TCGAGAAAAATGGTCGCAAGTTC 60.059 43.478 0.00 0.00 39.48 3.01
6166 6664 4.568760 GGAACTAGAGCTCGAGAAAAATGG 59.431 45.833 27.99 4.10 0.00 3.16
6194 6692 6.526674 CGGTGGAAAACATAGCAAAAAGATAC 59.473 38.462 0.00 0.00 0.00 2.24
6357 6862 5.453567 AAATCTCTTTCCGTTTTTCCAGG 57.546 39.130 0.00 0.00 0.00 4.45
6467 6987 1.098129 TCTCCGATCGAGACTGGCTG 61.098 60.000 18.66 0.00 42.97 4.85
6468 6988 0.817634 CTCTCCGATCGAGACTGGCT 60.818 60.000 18.66 0.00 42.97 4.75
6469 6989 1.652012 CTCTCCGATCGAGACTGGC 59.348 63.158 18.66 0.00 42.97 4.85
6470 6990 1.791103 GCCTCTCCGATCGAGACTGG 61.791 65.000 18.66 15.28 42.97 4.00
6471 6991 0.817634 AGCCTCTCCGATCGAGACTG 60.818 60.000 18.66 9.98 42.97 3.51
6472 6992 0.534203 GAGCCTCTCCGATCGAGACT 60.534 60.000 18.66 11.18 42.97 3.24
6473 6993 0.534203 AGAGCCTCTCCGATCGAGAC 60.534 60.000 18.66 6.84 42.97 3.36
6474 6994 0.533978 CAGAGCCTCTCCGATCGAGA 60.534 60.000 18.66 15.69 45.75 4.04
6614 7168 7.592938 TCATTCAGAAGACAACGCATAAAAAT 58.407 30.769 0.00 0.00 0.00 1.82
6632 7186 6.922247 AGTGCATTTGTAGATCTCATTCAG 57.078 37.500 0.00 0.00 0.00 3.02
6645 7207 1.542915 CTGGCAGCTTAGTGCATTTGT 59.457 47.619 0.00 0.00 45.93 2.83
6670 7232 4.157656 TGATTTCGCACCCCATTAGAAAAG 59.842 41.667 0.00 0.00 34.97 2.27
6673 7235 3.358111 TGATTTCGCACCCCATTAGAA 57.642 42.857 0.00 0.00 0.00 2.10
6675 7237 2.951642 ACATGATTTCGCACCCCATTAG 59.048 45.455 0.00 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.