AutoCloner

Multiple sequence alignment - TraesCS7A01G171500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G171500	chr7A	100.000	2663	0	0	1	2663	126917413	126914751	0.000000e+00	4918.0
1	TraesCS7A01G171500	chr7A	75.692	325	53	23	272	587	63385668	63385361	3.570000e-29	139.0
2	TraesCS7A01G171500	chr4A	90.822	2081	153	12	618	2663	544592774	544594851	0.000000e+00	2750.0
3	TraesCS7A01G171500	chr2A	89.177	2079	184	23	621	2663	756213309	756211236	0.000000e+00	2555.0
4	TraesCS7A01G171500	chr6A	84.512	2079	256	24	619	2663	42645944	42643898	0.000000e+00	1995.0
5	TraesCS7A01G171500	chr6A	86.190	992	117	13	1686	2663	42523599	42522614	0.000000e+00	1055.0
6	TraesCS7A01G171500	chr6A	85.887	992	120	12	1686	2663	42323287	42322302	0.000000e+00	1038.0
7	TraesCS7A01G171500	chr6A	85.614	994	119	15	1686	2663	42545935	42544950	0.000000e+00	1022.0
8	TraesCS7A01G171500	chr6A	86.786	613	77	1	2055	2663	42576157	42575545	0.000000e+00	680.0
9	TraesCS7A01G171500	chr6A	86.460	613	79	1	2055	2663	42357163	42356551	0.000000e+00	669.0
10	TraesCS7A01G171500	chr6A	86.460	613	79	1	2055	2663	42611807	42611195	0.000000e+00	669.0
11	TraesCS7A01G171500	chr6A	87.730	489	58	2	1021	1508	42323844	42323357	1.070000e-158	569.0
12	TraesCS7A01G171500	chr6A	87.526	489	59	2	1021	1508	42524156	42523669	4.980000e-157	564.0
13	TraesCS7A01G171500	chr6A	87.321	489	60	2	1021	1508	42546493	42546006	2.320000e-155	558.0
14	TraesCS7A01G171500	chr6A	89.552	67	7	0	67	133	97609444	97609378	4.720000e-13	86.1
15	TraesCS7A01G171500	chr7B	86.949	567	48	17	58	621	86163376	86162833	4.870000e-172	614.0
16	TraesCS7A01G171500	chr1B	84.637	358	52	3	622	978	608367667	608367312	1.170000e-93	353.0
17	TraesCS7A01G171500	chr6D	81.206	431	66	13	171	595	60551762	60551341	1.530000e-87	333.0
18	TraesCS7A01G171500	chr5D	77.982	545	79	30	62	591	374623315	374622797	1.200000e-78	303.0
19	TraesCS7A01G171500	chr5D	77.101	345	61	17	246	582	531969821	531970155	1.630000e-42	183.0
20	TraesCS7A01G171500	chr5D	85.714	63	9	0	1097	1159	362588784	362588846	1.710000e-07	67.6
21	TraesCS7A01G171500	chr6B	80.344	407	55	17	197	595	134830539	134830150	4.340000e-73	285.0
22	TraesCS7A01G171500	chr6B	78.431	102	20	2	621	721	643633694	643633594	6.150000e-07	65.8
23	TraesCS7A01G171500	chr3D	82.727	330	44	12	173	495	135015870	135016193	5.610000e-72	281.0
24	TraesCS7A01G171500	chr3D	87.156	218	27	1	611	828	569978022	569978238	2.050000e-61	246.0
25	TraesCS7A01G171500	chr3D	86.207	87	10	2	62	148	23156416	23156500	2.820000e-15	93.5
26	TraesCS7A01G171500	chr2D	75.752	565	106	25	1	555	432848541	432849084	3.400000e-64	255.0
27	TraesCS7A01G171500	chr2D	79.755	163	32	1	997	1159	534496543	534496704	1.670000e-22	117.0
28	TraesCS7A01G171500	chr7D	78.304	401	67	15	202	595	214346913	214347300	9.530000e-60	241.0
29	TraesCS7A01G171500	chr7D	97.143	35	0	1	1720	1754	616690939	616690906	1.030000e-04	58.4
30	TraesCS7A01G171500	chr2B	85.780	218	31	0	621	838	61025413	61025630	5.730000e-57	231.0
31	TraesCS7A01G171500	chr4B	76.862	376	57	27	196	560	461166393	461166037	4.530000e-43	185.0
32	TraesCS7A01G171500	chr1D	73.704	540	103	30	61	583	46461193	46460676	9.800000e-40	174.0
33	TraesCS7A01G171500	chr1D	81.250	160	30	0	1000	1159	78402595	78402436	2.150000e-26	130.0
34	TraesCS7A01G171500	chr4D	77.778	270	46	12	319	583	38590102	38590362	1.280000e-33	154.0
35	TraesCS7A01G171500	chr3B	85.714	91	11	2	58	147	40851400	40851489	7.850000e-16	95.3
36	TraesCS7A01G171500	chr5B	97.059	34	0	1	1720	1753	35249164	35249132	3.700000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G171500	chr7A	126914751	126917413	2662	True	4918.0	4918	100.0000	1	2663	1	chr7A.!!$R2	2662
1	TraesCS7A01G171500	chr4A	544592774	544594851	2077	False	2750.0	2750	90.8220	618	2663	1	chr4A.!!$F1	2045
2	TraesCS7A01G171500	chr2A	756211236	756213309	2073	True	2555.0	2555	89.1770	621	2663	1	chr2A.!!$R1	2042
3	TraesCS7A01G171500	chr6A	42643898	42645944	2046	True	1995.0	1995	84.5120	619	2663	1	chr6A.!!$R4	2044
4	TraesCS7A01G171500	chr6A	42522614	42524156	1542	True	809.5	1055	86.8580	1021	2663	2	chr6A.!!$R7	1642
5	TraesCS7A01G171500	chr6A	42322302	42323844	1542	True	803.5	1038	86.8085	1021	2663	2	chr6A.!!$R6	1642
6	TraesCS7A01G171500	chr6A	42544950	42546493	1543	True	790.0	1022	86.4675	1021	2663	2	chr6A.!!$R8	1642
7	TraesCS7A01G171500	chr6A	42575545	42576157	612	True	680.0	680	86.7860	2055	2663	1	chr6A.!!$R2	608
8	TraesCS7A01G171500	chr6A	42356551	42357163	612	True	669.0	669	86.4600	2055	2663	1	chr6A.!!$R1	608
9	TraesCS7A01G171500	chr6A	42611195	42611807	612	True	669.0	669	86.4600	2055	2663	1	chr6A.!!$R3	608
10	TraesCS7A01G171500	chr7B	86162833	86163376	543	True	614.0	614	86.9490	58	621	1	chr7B.!!$R1	563
11	TraesCS7A01G171500	chr5D	374622797	374623315	518	True	303.0	303	77.9820	62	591	1	chr5D.!!$R1	529
12	TraesCS7A01G171500	chr2D	432848541	432849084	543	False	255.0	255	75.7520	1	555	1	chr2D.!!$F1	554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
769	801	0.530744	TTGATTGCGACGGCTCTAGT	59.469	50.0	0.0	0.0	40.82	2.57	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2455	2525	0.96486	CATTGCCACAACCATCCCGA	60.965	55.0	0.0	0.0	0.0	5.14	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	39	4.936685	AAGGAGGAAAGAATTAGTGGCT	57.063	40.909	0.00	0.00	0.00	4.75
40	41	4.849518	AGGAGGAAAGAATTAGTGGCTTC	58.150	43.478	0.00	0.00	0.00	3.86
41	42	4.289672	AGGAGGAAAGAATTAGTGGCTTCA	59.710	41.667	0.00	0.00	0.00	3.02
43	44	5.491982	GAGGAAAGAATTAGTGGCTTCAGA	58.508	41.667	0.00	0.00	0.00	3.27
47	48	8.109634	AGGAAAGAATTAGTGGCTTCAGAATTA	58.890	33.333	0.00	0.00	0.00	1.40
49	50	6.910536	AGAATTAGTGGCTTCAGAATTACG	57.089	37.500	0.00	0.00	0.00	3.18
50	51	5.294552	AGAATTAGTGGCTTCAGAATTACGC	59.705	40.000	0.00	0.00	0.00	4.42
53	54	3.003480	AGTGGCTTCAGAATTACGCTTC	58.997	45.455	0.00	0.00	0.00	3.86
56	57	3.436704	TGGCTTCAGAATTACGCTTCAAG	59.563	43.478	0.00	0.00	0.00	3.02
169	183	9.811995	AAAAAGAAACAAAAACTACATAGGGTC	57.188	29.630	0.00	0.00	0.00	4.46
380	399	7.496591	TGACATCGGTATTACCCATTTAAGAAC	59.503	37.037	7.29	0.00	33.75	3.01
381	400	7.340256	ACATCGGTATTACCCATTTAAGAACA	58.660	34.615	7.29	0.00	33.75	3.18
382	401	7.830201	ACATCGGTATTACCCATTTAAGAACAA	59.170	33.333	7.29	0.00	33.75	2.83
383	402	8.679100	CATCGGTATTACCCATTTAAGAACAAA	58.321	33.333	7.29	0.00	33.75	2.83
384	403	8.632906	TCGGTATTACCCATTTAAGAACAAAA	57.367	30.769	7.29	0.00	33.75	2.44
385	404	9.075678	TCGGTATTACCCATTTAAGAACAAAAA	57.924	29.630	7.29	0.00	33.75	1.94
386	405	9.863845	CGGTATTACCCATTTAAGAACAAAAAT	57.136	29.630	7.29	0.00	33.75	1.82
422	451	4.370364	AGAACGACAAAAATTGCACACT	57.630	36.364	0.00	0.00	0.00	3.55
424	453	5.510671	AGAACGACAAAAATTGCACACTAG	58.489	37.500	0.00	0.00	0.00	2.57
425	454	4.223320	ACGACAAAAATTGCACACTAGG	57.777	40.909	0.00	0.00	0.00	3.02
440	470	5.468746	GCACACTAGGTTCACAAAGATTACA	59.531	40.000	0.00	0.00	0.00	2.41
441	471	6.149474	GCACACTAGGTTCACAAAGATTACAT	59.851	38.462	0.00	0.00	0.00	2.29
535	566	7.986889	GGAATGAATTAGTGGCATTGGTTTTAT	59.013	33.333	0.00	0.00	32.80	1.40
536	567	9.382275	GAATGAATTAGTGGCATTGGTTTTATT	57.618	29.630	0.00	0.00	32.80	1.40
664	696	1.133982	CTCAGATGAGCCCGATATCCG	59.866	57.143	0.00	0.00	35.13	4.18
692	724	2.368548	TCCTATGCGCCAAGATATGTGT	59.631	45.455	4.18	0.00	0.00	3.72
745	777	1.235281	CCCGTCTCGTGTGTCAGAGA	61.235	60.000	0.00	0.00	40.78	3.10
766	798	1.709147	GCATTGATTGCGACGGCTCT	61.709	55.000	0.00	0.00	42.54	4.09
769	801	0.530744	TTGATTGCGACGGCTCTAGT	59.469	50.000	0.00	0.00	40.82	2.57
793	825	1.079819	CCGTTGCGAGACAGATGGT	60.080	57.895	0.00	0.00	0.00	3.55
842	874	2.837498	CCATCATGAGCCGTATGAACA	58.163	47.619	0.09	0.00	38.01	3.18
924	956	0.677731	ACAACCTCATCCACCGCATG	60.678	55.000	0.00	0.00	0.00	4.06
932	964	2.103941	TCATCCACCGCATGCACTATTA	59.896	45.455	19.57	0.00	0.00	0.98
978	1011	2.859273	ATTGAGCTCGACCTTGCCCG	62.859	60.000	5.59	0.00	0.00	6.13
986	1019	2.690881	ACCTTGCCCGGCCATCTA	60.691	61.111	7.03	0.00	0.00	1.98
1011	1044	1.971505	GACCCGCCATGTCCTCATCA	61.972	60.000	0.00	0.00	31.15	3.07
1060	1093	2.203181	GGCTGCTCCCTCTGATGC	60.203	66.667	0.00	0.00	0.00	3.91
1162	1195	4.603985	CATCCGCTACGATGTAAGTTGTA	58.396	43.478	0.00	0.00	35.83	2.41
1166	1199	5.745294	TCCGCTACGATGTAAGTTGTATTTC	59.255	40.000	0.00	0.00	0.00	2.17
1263	1296	9.072375	TCCAGTATGTGTTTCATATTTTGTCAA	57.928	29.630	0.00	0.00	40.54	3.18
1297	1330	0.249699	TTTCTTCGAGTTCCAGCGCA	60.250	50.000	11.47	0.00	0.00	6.09
1340	1373	2.202388	CCAGATTGTTGCTGCGCG	60.202	61.111	0.00	0.00	32.06	6.86
1377	1410	2.442643	CCGGCTGGGCATGGATTT	60.443	61.111	2.57	0.00	0.00	2.17
1421	1454	0.326264	GTCCAGATGGTTCCAGCTGT	59.674	55.000	27.64	0.31	45.61	4.40
1428	1461	3.264193	AGATGGTTCCAGCTGTCATACAA	59.736	43.478	13.81	0.00	31.00	2.41
1440	1473	1.677300	CATACAACCCCAGGCGCAA	60.677	57.895	10.83	0.00	0.00	4.85
1492	1525	4.025858	AGGCTGCGATGCACCAGT	62.026	61.111	11.18	0.00	34.10	4.00
1494	1527	2.743538	GCTGCGATGCACCAGTCA	60.744	61.111	11.18	0.00	33.79	3.41
1513	1546	3.883462	CGCAGGCGGTCAACAATA	58.117	55.556	5.63	0.00	35.56	1.90
1575	1608	1.162698	CATCTGGTGCACAAGGACTG	58.837	55.000	21.25	12.23	36.20	3.51
1586	1619	3.120086	AAGGACTGGCCGCAGTTGT	62.120	57.895	0.00	0.00	43.43	3.32
1600	1633	0.608130	AGTTGTCGTGCTCATGGCTA	59.392	50.000	7.54	0.00	42.39	3.93
1663	1696	5.795441	GTGCTTGCTATGTACTTTGCTTAAC	59.205	40.000	14.37	6.14	0.00	2.01
1848	1901	9.922305	GGTAATGAAGATCTTCTTAAAATGACG	57.078	33.333	30.45	0.00	36.73	4.35
1931	1985	8.859090	CCCTAGACCATAATGAATAAATTTGCA	58.141	33.333	0.00	0.00	0.00	4.08
1945	1999	7.849804	ATAAATTTGCACTACACGATCTCTT	57.150	32.000	0.00	0.00	0.00	2.85
1946	2000	5.536554	AATTTGCACTACACGATCTCTTG	57.463	39.130	0.00	0.00	0.00	3.02
1947	2001	2.654749	TGCACTACACGATCTCTTGG	57.345	50.000	0.00	0.00	0.00	3.61
1948	2002	1.893137	TGCACTACACGATCTCTTGGT	59.107	47.619	0.00	0.00	0.00	3.67
2033	2099	3.394313	GGGCGACCGTAATTTTTGTAG	57.606	47.619	0.00	0.00	43.64	2.74
2053	2119	4.451150	GACGAGCCGGCACATCCA	62.451	66.667	31.54	0.00	33.63	3.41
2108	2174	5.826643	ACTCTAATTATGAAGGGGCAAACA	58.173	37.500	0.00	0.00	0.00	2.83
2109	2175	5.652452	ACTCTAATTATGAAGGGGCAAACAC	59.348	40.000	0.00	0.00	0.00	3.32
2121	2187	1.601914	GGCAAACACGTCATTTCACCC	60.602	52.381	0.00	0.00	0.00	4.61
2122	2188	1.924191	GCAAACACGTCATTTCACCCG	60.924	52.381	0.00	0.00	0.00	5.28
2181	2251	2.351835	CCACGGATCCAGTCATATCGTC	60.352	54.545	13.41	0.00	0.00	4.20
2198	2268	1.067425	CGTCAACCATACCGACCAAGA	60.067	52.381	0.00	0.00	0.00	3.02
2269	2339	0.326264	CCTCTTTGCCAGGCAGTACT	59.674	55.000	15.50	0.00	40.61	2.73
2296	2366	3.194755	TCGTACTCACAACAGCATGGTAT	59.805	43.478	0.00	0.00	43.62	2.73
2339	2409	9.990360	TGTTTTCTCTGTTCATGTTGTACTATA	57.010	29.630	0.00	0.00	0.00	1.31
2342	2412	9.856488	TTTCTCTGTTCATGTTGTACTATAGTC	57.144	33.333	9.12	2.17	0.00	2.59
2354	2424	6.451064	TGTACTATAGTCAGTGTGTCATGG	57.549	41.667	9.12	0.00	0.00	3.66
2361	2431	1.134995	TCAGTGTGTCATGGATCTCGC	60.135	52.381	0.00	0.00	0.00	5.03
2376	2446	0.463204	CTCGCCCAGATCTGACACAT	59.537	55.000	24.62	0.00	0.00	3.21
2431	2501	3.772025	CCCTGTAGGATGACCATAGATCC	59.228	52.174	0.00	0.00	38.83	3.36
2642	2712	7.178628	ACAAGAAGTGGTTAGTAGAGCAGATTA	59.821	37.037	0.00	0.00	0.00	1.75

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	7.818997	AATTCTTTCCTCCTTACGAAACTTT	57.181	32.000	0.00	0.00	0.00	2.66
15	16	5.746284	AGCCACTAATTCTTTCCTCCTTAC	58.254	41.667	0.00	0.00	0.00	2.34
19	20	4.589908	TGAAGCCACTAATTCTTTCCTCC	58.410	43.478	0.00	0.00	0.00	4.30
20	21	5.491982	TCTGAAGCCACTAATTCTTTCCTC	58.508	41.667	0.00	0.00	0.00	3.71
26	27	5.294552	GCGTAATTCTGAAGCCACTAATTCT	59.705	40.000	0.00	0.00	0.00	2.40
147	161	6.940867	GGAGACCCTATGTAGTTTTTGTTTCT	59.059	38.462	0.00	0.00	0.00	2.52
148	162	6.713450	TGGAGACCCTATGTAGTTTTTGTTTC	59.287	38.462	0.00	0.00	0.00	2.78
149	163	6.489022	GTGGAGACCCTATGTAGTTTTTGTTT	59.511	38.462	0.00	0.00	0.00	2.83
158	172	5.878406	ATTTCTGTGGAGACCCTATGTAG	57.122	43.478	0.00	0.00	0.00	2.74
160	174	4.289672	ACAATTTCTGTGGAGACCCTATGT	59.710	41.667	0.00	0.00	36.69	2.29
391	410	9.484326	GCAATTTTTGTCGTTCTTTGTTTTTAT	57.516	25.926	0.00	0.00	0.00	1.40
392	411	8.495949	TGCAATTTTTGTCGTTCTTTGTTTTTA	58.504	25.926	0.00	0.00	0.00	1.52
402	431	4.675114	CCTAGTGTGCAATTTTTGTCGTTC	59.325	41.667	0.00	0.00	0.00	3.95
485	515	7.041916	TCCTTCTTAGTAATCGTTTTTGCGAAA	60.042	33.333	0.00	0.00	44.38	3.46
486	516	6.424509	TCCTTCTTAGTAATCGTTTTTGCGAA	59.575	34.615	0.00	0.00	44.38	4.70
487	517	5.927689	TCCTTCTTAGTAATCGTTTTTGCGA	59.072	36.000	0.00	0.00	45.32	5.10
488	518	6.160664	TCCTTCTTAGTAATCGTTTTTGCG	57.839	37.500	0.00	0.00	0.00	4.85
489	519	8.234546	TCATTCCTTCTTAGTAATCGTTTTTGC	58.765	33.333	0.00	0.00	0.00	3.68
656	688	0.594602	TAGGAACGGTGCGGATATCG	59.405	55.000	0.00	0.00	42.76	2.92
664	696	3.573491	GGCGCATAGGAACGGTGC	61.573	66.667	10.83	0.00	39.49	5.01
692	724	5.547465	ACGGTCAGAAAATACATGAAGACA	58.453	37.500	0.00	0.00	0.00	3.41
783	815	1.738099	GTCGCGCAACCATCTGTCT	60.738	57.895	8.75	0.00	0.00	3.41
814	846	0.885596	GGCTCATGATGGCTCAGCTC	60.886	60.000	0.00	0.00	34.12	4.09
842	874	4.598257	CGTCTGTGCGGATCCTTT	57.402	55.556	10.75	0.00	0.00	3.11
877	909	1.683629	GGGCCGGTGGACATTTATTGA	60.684	52.381	1.90	0.00	27.52	2.57
924	956	1.351350	GTGGGAGGGGGATAATAGTGC	59.649	57.143	0.00	0.00	0.00	4.40
978	1011	1.153229	GGGTCAACCGTAGATGGCC	60.153	63.158	0.00	0.00	38.01	5.36
1011	1044	1.539665	GGGGAGAGAGGAGGACGAT	59.460	63.158	0.00	0.00	0.00	3.73
1166	1199	3.003480	GGGTCGGAACTTTCTGAATCAG	58.997	50.000	3.38	3.38	43.67	2.90
1179	1212	1.207089	CAACTAGATGCAGGGTCGGAA	59.793	52.381	0.00	0.00	0.00	4.30
1263	1296	0.669077	AGAAACGACACTGACGAGCT	59.331	50.000	7.91	0.00	34.70	4.09
1297	1330	3.713248	TGAGTCATCCTCCTGCAATATGT	59.287	43.478	0.00	0.00	39.65	2.29
1377	1410	0.889994	GGTTGCCATGATGAACTGCA	59.110	50.000	0.00	0.00	0.00	4.41
1421	1454	2.130821	TTGCGCCTGGGGTTGTATGA	62.131	55.000	12.70	0.00	0.00	2.15
1479	1512	2.358615	GGTGACTGGTGCATCGCA	60.359	61.111	0.00	0.00	35.60	5.10
1513	1546	2.418197	GCATGATGGCTTCAGCAAACAT	60.418	45.455	9.09	0.00	40.39	2.71
1600	1633	2.498167	GGTGAGCAAGATGTTGACAGT	58.502	47.619	6.80	0.00	35.46	3.55
1663	1696	1.002468	ACGCAGCAGCAACACTTTAAG	60.002	47.619	0.82	0.00	42.27	1.85
1848	1901	4.008074	TCTGGGATTCAGACAGACAAAC	57.992	45.455	0.00	0.00	46.71	2.93
1922	1976	6.092122	CCAAGAGATCGTGTAGTGCAAATTTA	59.908	38.462	0.00	0.00	0.00	1.40
1929	1983	2.531206	GACCAAGAGATCGTGTAGTGC	58.469	52.381	0.00	0.00	0.00	4.40
1931	1985	2.755655	CTGGACCAAGAGATCGTGTAGT	59.244	50.000	0.00	0.00	0.00	2.73
1945	1999	2.289819	GGTATCGAAAACCACTGGACCA	60.290	50.000	13.85	0.00	36.96	4.02
1946	2000	2.353323	GGTATCGAAAACCACTGGACC	58.647	52.381	13.85	0.00	36.96	4.46
1947	2001	1.997606	CGGTATCGAAAACCACTGGAC	59.002	52.381	17.60	0.00	36.78	4.02
1948	2002	1.673626	GCGGTATCGAAAACCACTGGA	60.674	52.381	17.60	0.00	36.78	3.86
2031	2097	1.391933	ATGTGCCGGCTCGTCATCTA	61.392	55.000	29.70	6.44	0.00	1.98
2033	2099	2.202932	ATGTGCCGGCTCGTCATC	60.203	61.111	29.70	9.44	0.00	2.92
2108	2174	1.736645	CGCTCGGGTGAAATGACGT	60.737	57.895	0.00	0.00	0.00	4.34
2109	2175	2.452813	CCGCTCGGGTGAAATGACG	61.453	63.158	0.00	0.00	0.00	4.35
2181	2251	1.355971	CGTCTTGGTCGGTATGGTTG	58.644	55.000	0.00	0.00	0.00	3.77
2244	2314	2.759114	CTGGCAAAGAGGAGGGCA	59.241	61.111	0.00	0.00	35.66	5.36
2269	2339	4.776795	TGCTGTTGTGAGTACGAATAGA	57.223	40.909	0.00	0.00	0.00	1.98
2296	2366	5.134339	AGAAAACATAATATGGGAGGGAGCA	59.866	40.000	5.16	0.00	33.60	4.26
2339	2409	2.165234	CGAGATCCATGACACACTGACT	59.835	50.000	0.00	0.00	0.00	3.41
2342	2412	1.284657	GCGAGATCCATGACACACTG	58.715	55.000	0.00	0.00	0.00	3.66
2361	2431	2.422479	CAGCAAATGTGTCAGATCTGGG	59.578	50.000	22.42	0.00	0.00	4.45
2376	2446	4.810191	AAAAGGGTACACAAACAGCAAA	57.190	36.364	0.00	0.00	0.00	3.68
2455	2525	0.964860	CATTGCCACAACCATCCCGA	60.965	55.000	0.00	0.00	0.00	5.14
2642	2712	3.356529	CTTCAGCATACCTCCAAACCT	57.643	47.619	0.00	0.00	0.00	3.50

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.