Multiple sequence alignment - TraesCS7A01G171100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G171100 chr7A 100.000 3446 0 0 1 3446 126859760 126863205 0.000000e+00 6364
1 TraesCS7A01G171100 chr7A 76.281 1425 287 40 1028 2427 126593256 126594654 0.000000e+00 712
2 TraesCS7A01G171100 chr7A 90.710 183 17 0 129 311 618199085 618199267 9.550000e-61 244
3 TraesCS7A01G171100 chr7A 90.710 183 17 0 129 311 681096625 681096443 9.550000e-61 244
4 TraesCS7A01G171100 chr7A 90.270 185 18 0 129 313 66781963 66782147 3.440000e-60 243
5 TraesCS7A01G171100 chr7A 89.529 191 19 1 129 318 521964162 521963972 1.240000e-59 241
6 TraesCS7A01G171100 chr7A 70.423 852 197 45 1588 2410 126784480 126785305 3.610000e-25 126
7 TraesCS7A01G171100 chr7D 93.465 3183 127 33 311 3446 124292666 124295814 0.000000e+00 4650
8 TraesCS7A01G171100 chr7D 76.533 1321 260 34 1033 2322 123739385 123738084 0.000000e+00 676
9 TraesCS7A01G171100 chr7D 76.339 224 41 11 2021 2238 124022076 124021859 3.640000e-20 110
10 TraesCS7A01G171100 chr7B 92.524 2488 134 22 311 2776 85939981 85942438 0.000000e+00 3517
11 TraesCS7A01G171100 chr7B 89.730 555 43 8 2895 3446 86132480 86133023 0.000000e+00 697
12 TraesCS7A01G171100 chr7B 76.048 1336 259 45 1028 2322 85150852 85149537 3.750000e-179 638
13 TraesCS7A01G171100 chr4B 90.957 188 17 0 129 316 551074429 551074242 1.590000e-63 254
14 TraesCS7A01G171100 chr6B 90.323 186 18 0 129 314 518679959 518679774 9.550000e-61 244
15 TraesCS7A01G171100 chr4A 90.323 186 18 0 129 314 445072840 445073025 9.550000e-61 244
16 TraesCS7A01G171100 chr2A 90.374 187 17 1 129 314 158051196 158051010 9.550000e-61 244
17 TraesCS7A01G171100 chr1A 90.710 183 17 0 129 311 572989691 572989873 9.550000e-61 244
18 TraesCS7A01G171100 chr2B 94.030 67 2 2 67 132 110829520 110829455 2.190000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G171100 chr7A 126859760 126863205 3445 False 6364 6364 100.000 1 3446 1 chr7A.!!$F4 3445
1 TraesCS7A01G171100 chr7A 126593256 126594654 1398 False 712 712 76.281 1028 2427 1 chr7A.!!$F2 1399
2 TraesCS7A01G171100 chr7D 124292666 124295814 3148 False 4650 4650 93.465 311 3446 1 chr7D.!!$F1 3135
3 TraesCS7A01G171100 chr7D 123738084 123739385 1301 True 676 676 76.533 1033 2322 1 chr7D.!!$R1 1289
4 TraesCS7A01G171100 chr7B 85939981 85942438 2457 False 3517 3517 92.524 311 2776 1 chr7B.!!$F1 2465
5 TraesCS7A01G171100 chr7B 86132480 86133023 543 False 697 697 89.730 2895 3446 1 chr7B.!!$F2 551
6 TraesCS7A01G171100 chr7B 85149537 85150852 1315 True 638 638 76.048 1028 2322 1 chr7B.!!$R1 1294

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.526954 CACTTCCGGCTATACGCGTT 60.527 55.0 20.78 8.23 40.44 4.84 F
43 44 0.526954 ACTTCCGGCTATACGCGTTG 60.527 55.0 20.78 9.79 40.44 4.10 F
939 950 0.747255 ACTCCTATTGCGCATCTCGT 59.253 50.0 12.75 0.90 41.07 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1695 1726 0.394488 TGTCGAGCTCCTCCTGGTAG 60.394 60.000 8.47 0.0 34.23 3.18 R
1810 1841 4.868734 GTCCGAATCTTTCAGGTACGAATT 59.131 41.667 0.00 0.0 0.00 2.17 R
2935 3042 1.484653 TGTGATACGGCAGCATACCTT 59.515 47.619 0.00 0.0 0.00 3.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.897377 AAGAATAATTTGACCACTTCCGG 57.103 39.130 0.00 0.00 0.00 5.14
32 33 3.694566 AGAATAATTTGACCACTTCCGGC 59.305 43.478 0.00 0.00 0.00 6.13
33 34 2.871096 TAATTTGACCACTTCCGGCT 57.129 45.000 0.00 0.00 0.00 5.52
34 35 2.871096 AATTTGACCACTTCCGGCTA 57.129 45.000 0.00 0.00 0.00 3.93
35 36 3.366052 AATTTGACCACTTCCGGCTAT 57.634 42.857 0.00 0.00 0.00 2.97
36 37 4.497291 AATTTGACCACTTCCGGCTATA 57.503 40.909 0.00 0.00 0.00 1.31
37 38 2.973694 TTGACCACTTCCGGCTATAC 57.026 50.000 0.00 0.00 0.00 1.47
38 39 0.742505 TGACCACTTCCGGCTATACG 59.257 55.000 0.00 0.00 0.00 3.06
39 40 0.596859 GACCACTTCCGGCTATACGC 60.597 60.000 0.00 0.00 38.13 4.42
40 41 1.660575 CCACTTCCGGCTATACGCG 60.661 63.158 3.53 3.53 40.44 6.01
41 42 1.065273 CACTTCCGGCTATACGCGT 59.935 57.895 19.17 19.17 40.44 6.01
42 43 0.526954 CACTTCCGGCTATACGCGTT 60.527 55.000 20.78 8.23 40.44 4.84
43 44 0.526954 ACTTCCGGCTATACGCGTTG 60.527 55.000 20.78 9.79 40.44 4.10
44 45 1.818221 CTTCCGGCTATACGCGTTGC 61.818 60.000 20.78 19.43 40.44 4.17
45 46 3.335534 CCGGCTATACGCGTTGCC 61.336 66.667 28.62 28.62 40.44 4.52
46 47 3.335534 CGGCTATACGCGTTGCCC 61.336 66.667 30.56 20.29 42.15 5.36
47 48 2.108362 GGCTATACGCGTTGCCCT 59.892 61.111 28.38 10.17 39.49 5.19
48 49 1.954651 GGCTATACGCGTTGCCCTC 60.955 63.158 28.38 12.44 39.49 4.30
49 50 1.954651 GCTATACGCGTTGCCCTCC 60.955 63.158 20.78 0.00 0.00 4.30
50 51 1.660575 CTATACGCGTTGCCCTCCG 60.661 63.158 20.78 0.00 0.00 4.63
51 52 3.141522 TATACGCGTTGCCCTCCGG 62.142 63.158 20.78 0.00 0.00 5.14
70 71 3.707700 CGTGGCTTGCAACGCGTA 61.708 61.111 14.46 0.00 36.01 4.42
71 72 2.173382 GTGGCTTGCAACGCGTAG 59.827 61.111 14.46 7.40 0.00 3.51
91 92 3.670377 GCCAGCGGCCGAACTTTT 61.670 61.111 33.48 2.76 44.06 2.27
92 93 3.039134 CCAGCGGCCGAACTTTTT 58.961 55.556 33.48 0.72 0.00 1.94
111 112 5.937165 TTTTTAGCACGTGTAGCTATACG 57.063 39.130 33.03 33.03 43.48 3.06
134 135 7.507672 CGTGAATCGTGATAGTTTTCTTAGT 57.492 36.000 0.00 0.00 34.52 2.24
135 136 7.950236 CGTGAATCGTGATAGTTTTCTTAGTT 58.050 34.615 0.00 0.00 34.52 2.24
136 137 8.433126 CGTGAATCGTGATAGTTTTCTTAGTTT 58.567 33.333 0.00 0.00 34.52 2.66
190 191 9.890629 AACATAGTGAGATAAATTGTGCTAAGA 57.109 29.630 0.00 0.00 0.00 2.10
191 192 9.539825 ACATAGTGAGATAAATTGTGCTAAGAG 57.460 33.333 0.00 0.00 0.00 2.85
192 193 9.755804 CATAGTGAGATAAATTGTGCTAAGAGA 57.244 33.333 0.00 0.00 0.00 3.10
194 195 8.885494 AGTGAGATAAATTGTGCTAAGAGATC 57.115 34.615 0.00 0.00 0.00 2.75
195 196 8.481314 AGTGAGATAAATTGTGCTAAGAGATCA 58.519 33.333 0.00 0.00 0.00 2.92
196 197 9.270640 GTGAGATAAATTGTGCTAAGAGATCAT 57.729 33.333 0.00 0.00 0.00 2.45
197 198 9.486497 TGAGATAAATTGTGCTAAGAGATCATC 57.514 33.333 0.00 0.00 0.00 2.92
198 199 9.709495 GAGATAAATTGTGCTAAGAGATCATCT 57.291 33.333 0.00 0.00 41.27 2.90
203 204 7.934855 ATTGTGCTAAGAGATCATCTTTTGT 57.065 32.000 11.16 0.00 46.49 2.83
204 205 6.974932 TGTGCTAAGAGATCATCTTTTGTC 57.025 37.500 11.16 0.00 46.49 3.18
205 206 6.705302 TGTGCTAAGAGATCATCTTTTGTCT 58.295 36.000 11.16 0.00 46.49 3.41
206 207 7.164122 TGTGCTAAGAGATCATCTTTTGTCTT 58.836 34.615 11.16 4.38 46.49 3.01
207 208 8.314021 TGTGCTAAGAGATCATCTTTTGTCTTA 58.686 33.333 11.16 5.17 46.49 2.10
208 209 9.323985 GTGCTAAGAGATCATCTTTTGTCTTAT 57.676 33.333 11.16 0.00 46.49 1.73
209 210 9.539825 TGCTAAGAGATCATCTTTTGTCTTATC 57.460 33.333 11.16 3.16 46.49 1.75
210 211 9.762933 GCTAAGAGATCATCTTTTGTCTTATCT 57.237 33.333 11.16 0.00 46.49 1.98
255 256 8.622948 TTTTTCTTATGAGTTTTCTCTCCTCC 57.377 34.615 0.00 0.00 46.30 4.30
256 257 6.935240 TTCTTATGAGTTTTCTCTCCTCCA 57.065 37.500 0.00 0.00 46.30 3.86
257 258 6.287589 TCTTATGAGTTTTCTCTCCTCCAC 57.712 41.667 0.00 0.00 46.30 4.02
258 259 3.990959 ATGAGTTTTCTCTCCTCCACC 57.009 47.619 0.00 0.00 46.30 4.61
259 260 2.977808 TGAGTTTTCTCTCCTCCACCT 58.022 47.619 0.00 0.00 46.30 4.00
260 261 2.900546 TGAGTTTTCTCTCCTCCACCTC 59.099 50.000 0.00 0.00 46.30 3.85
261 262 2.900546 GAGTTTTCTCTCCTCCACCTCA 59.099 50.000 0.00 0.00 43.12 3.86
262 263 3.517500 GAGTTTTCTCTCCTCCACCTCAT 59.482 47.826 0.00 0.00 43.12 2.90
263 264 3.913163 AGTTTTCTCTCCTCCACCTCATT 59.087 43.478 0.00 0.00 0.00 2.57
264 265 5.094387 AGTTTTCTCTCCTCCACCTCATTA 58.906 41.667 0.00 0.00 0.00 1.90
265 266 5.728741 AGTTTTCTCTCCTCCACCTCATTAT 59.271 40.000 0.00 0.00 0.00 1.28
266 267 6.216456 AGTTTTCTCTCCTCCACCTCATTATT 59.784 38.462 0.00 0.00 0.00 1.40
267 268 6.642733 TTTCTCTCCTCCACCTCATTATTT 57.357 37.500 0.00 0.00 0.00 1.40
268 269 7.749377 TTTCTCTCCTCCACCTCATTATTTA 57.251 36.000 0.00 0.00 0.00 1.40
269 270 7.937700 TTCTCTCCTCCACCTCATTATTTAT 57.062 36.000 0.00 0.00 0.00 1.40
270 271 7.546250 TCTCTCCTCCACCTCATTATTTATC 57.454 40.000 0.00 0.00 0.00 1.75
271 272 6.498651 TCTCTCCTCCACCTCATTATTTATCC 59.501 42.308 0.00 0.00 0.00 2.59
272 273 6.393897 TCTCCTCCACCTCATTATTTATCCT 58.606 40.000 0.00 0.00 0.00 3.24
273 274 7.544650 TCTCCTCCACCTCATTATTTATCCTA 58.455 38.462 0.00 0.00 0.00 2.94
274 275 8.186985 TCTCCTCCACCTCATTATTTATCCTAT 58.813 37.037 0.00 0.00 0.00 2.57
275 276 8.150827 TCCTCCACCTCATTATTTATCCTATG 57.849 38.462 0.00 0.00 0.00 2.23
276 277 7.739444 TCCTCCACCTCATTATTTATCCTATGT 59.261 37.037 0.00 0.00 0.00 2.29
277 278 7.826252 CCTCCACCTCATTATTTATCCTATGTG 59.174 40.741 0.00 0.00 0.00 3.21
278 279 8.504811 TCCACCTCATTATTTATCCTATGTGA 57.495 34.615 0.00 0.00 0.00 3.58
279 280 8.375506 TCCACCTCATTATTTATCCTATGTGAC 58.624 37.037 0.00 0.00 0.00 3.67
280 281 8.156820 CCACCTCATTATTTATCCTATGTGACA 58.843 37.037 0.00 0.00 0.00 3.58
281 282 8.993121 CACCTCATTATTTATCCTATGTGACAC 58.007 37.037 0.00 0.00 0.00 3.67
282 283 8.938883 ACCTCATTATTTATCCTATGTGACACT 58.061 33.333 7.20 0.00 0.00 3.55
283 284 9.784531 CCTCATTATTTATCCTATGTGACACTT 57.215 33.333 7.20 3.00 0.00 3.16
293 294 7.278461 TCCTATGTGACACTTCTAAGATAGC 57.722 40.000 7.20 0.00 0.00 2.97
294 295 6.833933 TCCTATGTGACACTTCTAAGATAGCA 59.166 38.462 7.20 0.00 0.00 3.49
295 296 6.920758 CCTATGTGACACTTCTAAGATAGCAC 59.079 42.308 7.20 0.00 0.00 4.40
296 297 5.073311 TGTGACACTTCTAAGATAGCACC 57.927 43.478 7.20 0.00 0.00 5.01
297 298 4.526650 TGTGACACTTCTAAGATAGCACCA 59.473 41.667 7.20 0.00 0.00 4.17
298 299 5.187772 TGTGACACTTCTAAGATAGCACCAT 59.812 40.000 7.20 0.00 0.00 3.55
299 300 6.109359 GTGACACTTCTAAGATAGCACCATT 58.891 40.000 0.00 0.00 0.00 3.16
300 301 6.036517 GTGACACTTCTAAGATAGCACCATTG 59.963 42.308 0.00 0.00 0.00 2.82
301 302 6.054860 ACACTTCTAAGATAGCACCATTGT 57.945 37.500 0.00 0.00 0.00 2.71
302 303 7.093509 TGACACTTCTAAGATAGCACCATTGTA 60.094 37.037 0.00 0.00 0.00 2.41
303 304 7.042335 ACACTTCTAAGATAGCACCATTGTAC 58.958 38.462 0.00 0.00 0.00 2.90
304 305 7.041721 CACTTCTAAGATAGCACCATTGTACA 58.958 38.462 0.00 0.00 0.00 2.90
305 306 7.712639 CACTTCTAAGATAGCACCATTGTACAT 59.287 37.037 0.00 0.00 0.00 2.29
306 307 7.712639 ACTTCTAAGATAGCACCATTGTACATG 59.287 37.037 0.00 0.00 0.00 3.21
307 308 5.991606 TCTAAGATAGCACCATTGTACATGC 59.008 40.000 10.53 10.53 38.39 4.06
308 309 3.480470 AGATAGCACCATTGTACATGCC 58.520 45.455 14.08 1.71 38.92 4.40
309 310 2.051334 TAGCACCATTGTACATGCCC 57.949 50.000 14.08 0.00 38.92 5.36
388 390 2.242452 AGTGGAGCCTTTCCTAATTCCC 59.758 50.000 0.00 0.00 46.92 3.97
395 397 3.902218 CCTTTCCTAATTCCCAGCATCA 58.098 45.455 0.00 0.00 0.00 3.07
495 497 1.337703 GGCAATGGCATAATCAAGCGA 59.662 47.619 0.00 0.00 43.71 4.93
576 578 1.900486 GAGGAGGAGGACGAAGGAAAA 59.100 52.381 0.00 0.00 0.00 2.29
760 762 1.956170 CGAGCCGATAAATGCGCCT 60.956 57.895 4.18 0.00 0.00 5.52
762 764 1.569479 GAGCCGATAAATGCGCCTCC 61.569 60.000 4.18 0.00 28.10 4.30
800 802 2.506217 TCTCGTCATGGCGCGTTC 60.506 61.111 16.44 0.58 0.00 3.95
828 830 2.202298 GCGCCATGTTTCCGAACG 60.202 61.111 0.00 0.00 38.65 3.95
832 834 1.135803 CGCCATGTTTCCGAACGAATT 60.136 47.619 0.00 0.00 38.65 2.17
840 842 7.487829 CCATGTTTCCGAACGAATTTAATTCAT 59.512 33.333 16.57 5.73 39.22 2.57
841 843 7.789341 TGTTTCCGAACGAATTTAATTCATG 57.211 32.000 16.57 5.06 39.22 3.07
842 844 6.306837 TGTTTCCGAACGAATTTAATTCATGC 59.693 34.615 16.57 0.23 39.22 4.06
843 845 5.553290 TCCGAACGAATTTAATTCATGCA 57.447 34.783 16.57 0.00 39.22 3.96
864 866 3.351604 GCGAGAAGAACTTGCGTTG 57.648 52.632 0.00 0.00 44.68 4.10
865 867 0.859232 GCGAGAAGAACTTGCGTTGA 59.141 50.000 0.00 0.00 44.68 3.18
866 868 1.260561 GCGAGAAGAACTTGCGTTGAA 59.739 47.619 0.00 0.00 44.68 2.69
867 869 2.660362 GCGAGAAGAACTTGCGTTGAAG 60.660 50.000 0.00 0.00 44.68 3.02
892 902 1.463674 ACACCAAAGGCCAATCGATC 58.536 50.000 5.01 0.00 0.00 3.69
939 950 0.747255 ACTCCTATTGCGCATCTCGT 59.253 50.000 12.75 0.90 41.07 4.18
952 963 2.283298 CATCTCGTGCTGGTGCTTAAT 58.717 47.619 0.00 0.00 40.48 1.40
953 964 2.010145 TCTCGTGCTGGTGCTTAATC 57.990 50.000 0.00 0.00 40.48 1.75
954 965 1.275010 TCTCGTGCTGGTGCTTAATCA 59.725 47.619 0.00 0.00 40.48 2.57
955 966 1.662629 CTCGTGCTGGTGCTTAATCAG 59.337 52.381 0.00 0.00 40.32 2.90
956 967 1.001974 TCGTGCTGGTGCTTAATCAGT 59.998 47.619 0.00 0.00 39.44 3.41
957 968 1.806542 CGTGCTGGTGCTTAATCAGTT 59.193 47.619 0.00 0.00 39.44 3.16
958 969 3.000041 CGTGCTGGTGCTTAATCAGTTA 59.000 45.455 0.00 0.00 39.44 2.24
960 971 4.669197 CGTGCTGGTGCTTAATCAGTTAAC 60.669 45.833 0.00 0.00 39.44 2.01
961 972 4.455877 GTGCTGGTGCTTAATCAGTTAACT 59.544 41.667 1.12 1.12 39.44 2.24
962 973 4.455533 TGCTGGTGCTTAATCAGTTAACTG 59.544 41.667 26.60 26.60 39.44 3.16
963 974 4.455877 GCTGGTGCTTAATCAGTTAACTGT 59.544 41.667 29.83 17.44 39.44 3.55
964 975 5.642063 GCTGGTGCTTAATCAGTTAACTGTA 59.358 40.000 29.83 19.13 39.44 2.74
965 976 6.402226 GCTGGTGCTTAATCAGTTAACTGTAC 60.402 42.308 29.83 15.79 39.44 2.90
966 977 6.765403 TGGTGCTTAATCAGTTAACTGTACT 58.235 36.000 29.83 19.18 44.12 2.73
978 1000 7.016858 TCAGTTAACTGTACTCCAAATTAGGGT 59.983 37.037 29.83 0.00 44.12 4.34
979 1001 8.316214 CAGTTAACTGTACTCCAAATTAGGGTA 58.684 37.037 24.70 0.00 39.09 3.69
990 1012 4.448210 CAAATTAGGGTAAAGAGGCGCTA 58.552 43.478 7.64 0.00 0.00 4.26
995 1017 4.765813 AGGGTAAAGAGGCGCTAATTTA 57.234 40.909 7.64 7.34 0.00 1.40
1001 1023 6.651225 GGTAAAGAGGCGCTAATTTATCTCAT 59.349 38.462 7.64 0.00 0.00 2.90
1090 1112 1.955495 ATCGTGCATCAGCCGGTACA 61.955 55.000 1.90 0.00 41.13 2.90
1293 1321 4.063967 TACCTCGTGCTGGTGCCG 62.064 66.667 0.00 0.00 38.42 5.69
1695 1726 2.269241 CTCTTCCTGAACCCGGCC 59.731 66.667 0.00 0.00 0.00 6.13
1810 1841 2.832129 GGACTCATCACCAGGTTCTACA 59.168 50.000 0.00 0.00 0.00 2.74
1917 1951 3.356639 GATCCTCGCGTGCACCTCA 62.357 63.158 12.15 0.00 0.00 3.86
2217 2278 1.895238 CTGGTCCACGTTCGGGTAT 59.105 57.895 0.00 0.00 0.00 2.73
2265 2326 1.679944 CCGTGGATCATGTTCAAGCCT 60.680 52.381 6.14 0.00 0.00 4.58
2502 2585 6.303970 CACTCGATCACAAATTGACAATGAAC 59.696 38.462 0.34 0.00 36.92 3.18
2541 2628 1.810412 GCATGTCATTACCCCCTCGAC 60.810 57.143 0.00 0.00 0.00 4.20
2560 2647 5.741011 TCGACATAAAAGAGGTAATTGCCT 58.259 37.500 15.73 15.73 42.53 4.75
2574 2661 6.096846 AGGTAATTGCCTATTGGTGCTAAAAG 59.903 38.462 14.12 0.00 37.04 2.27
2686 2774 0.391661 CGCTGACTAGGTGTGCCAAT 60.392 55.000 0.00 0.00 37.19 3.16
2763 2852 7.215085 TCTCGTTAAAAGCCCCTAGATATTTC 58.785 38.462 0.00 0.00 0.00 2.17
2822 2912 5.163513 GCATGTCCCTTCATTTTTGTACAG 58.836 41.667 0.00 0.00 0.00 2.74
2823 2913 5.048083 GCATGTCCCTTCATTTTTGTACAGA 60.048 40.000 0.00 0.00 0.00 3.41
2873 2980 4.539881 GCTCGACTCGCCCGACTC 62.540 72.222 0.00 0.00 32.18 3.36
2874 2981 3.878519 CTCGACTCGCCCGACTCC 61.879 72.222 0.00 0.00 32.18 3.85
2875 2982 4.405671 TCGACTCGCCCGACTCCT 62.406 66.667 0.00 0.00 0.00 3.69
2876 2983 2.513204 CGACTCGCCCGACTCCTA 60.513 66.667 0.00 0.00 0.00 2.94
2887 2994 3.629142 CCGACTCCTAGGGAAAAATGT 57.371 47.619 9.46 0.00 0.00 2.71
2892 2999 5.127356 CGACTCCTAGGGAAAAATGTAGACT 59.873 44.000 9.46 0.00 0.00 3.24
2893 3000 6.301169 ACTCCTAGGGAAAAATGTAGACTG 57.699 41.667 9.46 0.00 0.00 3.51
2914 3021 0.684535 TGAAAGATCACTGACCCGCA 59.315 50.000 0.00 0.00 0.00 5.69
2930 3037 2.223923 CCCGCAGATTTTGTTGAACCAA 60.224 45.455 0.00 0.00 0.00 3.67
2931 3038 3.452474 CCGCAGATTTTGTTGAACCAAA 58.548 40.909 0.00 0.00 32.70 3.28
2932 3039 3.868077 CCGCAGATTTTGTTGAACCAAAA 59.132 39.130 0.00 3.94 45.43 2.44
2933 3040 4.331168 CCGCAGATTTTGTTGAACCAAAAA 59.669 37.500 0.00 0.00 44.76 1.94
3040 3147 6.613153 ACTAGAAGCACTACCAAATTCTCT 57.387 37.500 0.00 0.00 32.69 3.10
3094 3201 1.939974 ATGCATCACGCTCGTGTATT 58.060 45.000 19.95 6.01 45.55 1.89
3105 3212 1.852895 CTCGTGTATTACAGGCTTCGC 59.147 52.381 10.87 0.00 34.28 4.70
3133 3241 9.765795 GCAAATTACTACCAGTACATTCTATCT 57.234 33.333 0.00 0.00 28.93 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.466798 CCGGAAGTGGTCAAATTATTCTTTAAT 58.533 33.333 0.00 0.00 0.00 1.40
6 7 7.576098 GCCGGAAGTGGTCAAATTATTCTTTAA 60.576 37.037 5.05 0.00 0.00 1.52
7 8 6.127842 GCCGGAAGTGGTCAAATTATTCTTTA 60.128 38.462 5.05 0.00 0.00 1.85
8 9 5.336451 GCCGGAAGTGGTCAAATTATTCTTT 60.336 40.000 5.05 0.00 0.00 2.52
9 10 4.157840 GCCGGAAGTGGTCAAATTATTCTT 59.842 41.667 5.05 0.00 0.00 2.52
10 11 3.694566 GCCGGAAGTGGTCAAATTATTCT 59.305 43.478 5.05 0.00 0.00 2.40
11 12 3.694566 AGCCGGAAGTGGTCAAATTATTC 59.305 43.478 5.05 0.00 0.00 1.75
12 13 3.697166 AGCCGGAAGTGGTCAAATTATT 58.303 40.909 5.05 0.00 0.00 1.40
13 14 3.366052 AGCCGGAAGTGGTCAAATTAT 57.634 42.857 5.05 0.00 0.00 1.28
14 15 2.871096 AGCCGGAAGTGGTCAAATTA 57.129 45.000 5.05 0.00 0.00 1.40
15 16 2.871096 TAGCCGGAAGTGGTCAAATT 57.129 45.000 5.05 0.00 0.00 1.82
16 17 3.740141 CGTATAGCCGGAAGTGGTCAAAT 60.740 47.826 5.05 0.00 0.00 2.32
17 18 2.417651 CGTATAGCCGGAAGTGGTCAAA 60.418 50.000 5.05 0.00 0.00 2.69
18 19 1.135527 CGTATAGCCGGAAGTGGTCAA 59.864 52.381 5.05 0.00 0.00 3.18
19 20 0.742505 CGTATAGCCGGAAGTGGTCA 59.257 55.000 5.05 0.00 0.00 4.02
20 21 0.596859 GCGTATAGCCGGAAGTGGTC 60.597 60.000 5.05 0.00 40.81 4.02
21 22 1.440476 GCGTATAGCCGGAAGTGGT 59.560 57.895 5.05 0.00 40.81 4.16
22 23 1.660575 CGCGTATAGCCGGAAGTGG 60.661 63.158 5.05 0.00 44.76 4.00
23 24 0.526954 AACGCGTATAGCCGGAAGTG 60.527 55.000 14.46 0.00 44.76 3.16
24 25 0.526954 CAACGCGTATAGCCGGAAGT 60.527 55.000 14.46 0.00 44.76 3.01
25 26 1.818221 GCAACGCGTATAGCCGGAAG 61.818 60.000 14.46 0.00 44.76 3.46
26 27 1.879430 GCAACGCGTATAGCCGGAA 60.879 57.895 14.46 0.00 44.76 4.30
27 28 2.278989 GCAACGCGTATAGCCGGA 60.279 61.111 14.46 0.00 44.76 5.14
28 29 3.335534 GGCAACGCGTATAGCCGG 61.336 66.667 27.05 0.00 44.76 6.13
30 31 1.954651 GAGGGCAACGCGTATAGCC 60.955 63.158 30.70 30.70 46.28 3.93
31 32 1.954651 GGAGGGCAACGCGTATAGC 60.955 63.158 14.46 17.47 43.95 2.97
32 33 1.660575 CGGAGGGCAACGCGTATAG 60.661 63.158 14.46 7.09 37.60 1.31
33 34 2.414179 CGGAGGGCAACGCGTATA 59.586 61.111 14.46 0.00 37.60 1.47
53 54 3.629491 CTACGCGTTGCAAGCCACG 62.629 63.158 20.78 13.48 0.00 4.94
54 55 2.173382 CTACGCGTTGCAAGCCAC 59.827 61.111 20.78 0.00 0.00 5.01
55 56 3.722295 GCTACGCGTTGCAAGCCA 61.722 61.111 34.65 7.36 33.08 4.75
75 76 3.039134 AAAAAGTTCGGCCGCTGG 58.961 55.556 23.51 0.00 0.00 4.85
89 90 5.937165 CGTATAGCTACACGTGCTAAAAA 57.063 39.130 16.30 0.00 44.73 1.94
164 165 9.890629 TCTTAGCACAATTTATCTCACTATGTT 57.109 29.630 0.00 0.00 0.00 2.71
165 166 9.539825 CTCTTAGCACAATTTATCTCACTATGT 57.460 33.333 0.00 0.00 0.00 2.29
166 167 9.755804 TCTCTTAGCACAATTTATCTCACTATG 57.244 33.333 0.00 0.00 0.00 2.23
168 169 9.973450 GATCTCTTAGCACAATTTATCTCACTA 57.027 33.333 0.00 0.00 0.00 2.74
169 170 8.481314 TGATCTCTTAGCACAATTTATCTCACT 58.519 33.333 0.00 0.00 0.00 3.41
170 171 8.654230 TGATCTCTTAGCACAATTTATCTCAC 57.346 34.615 0.00 0.00 0.00 3.51
171 172 9.486497 GATGATCTCTTAGCACAATTTATCTCA 57.514 33.333 0.00 0.00 0.00 3.27
172 173 9.709495 AGATGATCTCTTAGCACAATTTATCTC 57.291 33.333 0.00 0.00 0.00 2.75
177 178 8.800332 ACAAAAGATGATCTCTTAGCACAATTT 58.200 29.630 0.00 0.00 43.60 1.82
178 179 8.345724 ACAAAAGATGATCTCTTAGCACAATT 57.654 30.769 0.00 0.00 43.60 2.32
179 180 7.828223 AGACAAAAGATGATCTCTTAGCACAAT 59.172 33.333 0.00 0.00 43.60 2.71
180 181 7.164122 AGACAAAAGATGATCTCTTAGCACAA 58.836 34.615 0.00 0.00 43.60 3.33
181 182 6.705302 AGACAAAAGATGATCTCTTAGCACA 58.295 36.000 0.00 0.00 43.60 4.57
182 183 7.608308 AAGACAAAAGATGATCTCTTAGCAC 57.392 36.000 0.00 2.95 43.60 4.40
183 184 9.539825 GATAAGACAAAAGATGATCTCTTAGCA 57.460 33.333 10.08 0.00 43.60 3.49
184 185 9.762933 AGATAAGACAAAAGATGATCTCTTAGC 57.237 33.333 0.00 2.29 43.60 3.09
230 231 8.217799 TGGAGGAGAGAAAACTCATAAGAAAAA 58.782 33.333 0.00 0.00 38.51 1.94
231 232 7.661847 GTGGAGGAGAGAAAACTCATAAGAAAA 59.338 37.037 0.00 0.00 38.51 2.29
232 233 7.162082 GTGGAGGAGAGAAAACTCATAAGAAA 58.838 38.462 0.00 0.00 38.51 2.52
233 234 6.295916 GGTGGAGGAGAGAAAACTCATAAGAA 60.296 42.308 0.00 0.00 38.51 2.52
234 235 5.187967 GGTGGAGGAGAGAAAACTCATAAGA 59.812 44.000 0.00 0.00 38.51 2.10
235 236 5.188751 AGGTGGAGGAGAGAAAACTCATAAG 59.811 44.000 0.00 0.00 38.51 1.73
236 237 5.094387 AGGTGGAGGAGAGAAAACTCATAA 58.906 41.667 0.00 0.00 38.51 1.90
237 238 4.689062 AGGTGGAGGAGAGAAAACTCATA 58.311 43.478 0.00 0.00 38.51 2.15
238 239 3.517500 GAGGTGGAGGAGAGAAAACTCAT 59.482 47.826 0.00 0.00 38.51 2.90
239 240 2.900546 GAGGTGGAGGAGAGAAAACTCA 59.099 50.000 0.00 0.00 38.51 3.41
240 241 2.900546 TGAGGTGGAGGAGAGAAAACTC 59.099 50.000 0.00 0.00 36.31 3.01
241 242 2.977808 TGAGGTGGAGGAGAGAAAACT 58.022 47.619 0.00 0.00 0.00 2.66
242 243 3.990959 ATGAGGTGGAGGAGAGAAAAC 57.009 47.619 0.00 0.00 0.00 2.43
243 244 6.642733 AATAATGAGGTGGAGGAGAGAAAA 57.357 37.500 0.00 0.00 0.00 2.29
244 245 6.642733 AAATAATGAGGTGGAGGAGAGAAA 57.357 37.500 0.00 0.00 0.00 2.52
245 246 7.016661 GGATAAATAATGAGGTGGAGGAGAGAA 59.983 40.741 0.00 0.00 0.00 2.87
246 247 6.498651 GGATAAATAATGAGGTGGAGGAGAGA 59.501 42.308 0.00 0.00 0.00 3.10
247 248 6.500049 AGGATAAATAATGAGGTGGAGGAGAG 59.500 42.308 0.00 0.00 0.00 3.20
248 249 6.393897 AGGATAAATAATGAGGTGGAGGAGA 58.606 40.000 0.00 0.00 0.00 3.71
249 250 6.694445 AGGATAAATAATGAGGTGGAGGAG 57.306 41.667 0.00 0.00 0.00 3.69
250 251 7.739444 ACATAGGATAAATAATGAGGTGGAGGA 59.261 37.037 0.00 0.00 0.00 3.71
251 252 7.826252 CACATAGGATAAATAATGAGGTGGAGG 59.174 40.741 0.00 0.00 0.00 4.30
252 253 8.597167 TCACATAGGATAAATAATGAGGTGGAG 58.403 37.037 0.00 0.00 0.00 3.86
253 254 8.375506 GTCACATAGGATAAATAATGAGGTGGA 58.624 37.037 0.00 0.00 0.00 4.02
254 255 8.156820 TGTCACATAGGATAAATAATGAGGTGG 58.843 37.037 0.00 0.00 0.00 4.61
255 256 8.993121 GTGTCACATAGGATAAATAATGAGGTG 58.007 37.037 0.00 0.00 0.00 4.00
256 257 8.938883 AGTGTCACATAGGATAAATAATGAGGT 58.061 33.333 5.62 0.00 0.00 3.85
257 258 9.784531 AAGTGTCACATAGGATAAATAATGAGG 57.215 33.333 5.62 0.00 0.00 3.86
267 268 9.015367 GCTATCTTAGAAGTGTCACATAGGATA 57.985 37.037 5.62 9.29 0.00 2.59
268 269 7.507277 TGCTATCTTAGAAGTGTCACATAGGAT 59.493 37.037 5.62 8.70 0.00 3.24
269 270 6.833933 TGCTATCTTAGAAGTGTCACATAGGA 59.166 38.462 5.62 0.53 0.00 2.94
270 271 6.920758 GTGCTATCTTAGAAGTGTCACATAGG 59.079 42.308 5.62 0.00 0.00 2.57
271 272 6.920758 GGTGCTATCTTAGAAGTGTCACATAG 59.079 42.308 5.62 3.20 0.00 2.23
272 273 6.379988 TGGTGCTATCTTAGAAGTGTCACATA 59.620 38.462 5.62 0.00 0.00 2.29
273 274 5.187772 TGGTGCTATCTTAGAAGTGTCACAT 59.812 40.000 5.62 0.00 0.00 3.21
274 275 4.526650 TGGTGCTATCTTAGAAGTGTCACA 59.473 41.667 5.62 0.00 0.00 3.58
275 276 5.073311 TGGTGCTATCTTAGAAGTGTCAC 57.927 43.478 0.00 0.00 0.00 3.67
276 277 5.939764 ATGGTGCTATCTTAGAAGTGTCA 57.060 39.130 0.00 0.00 0.00 3.58
277 278 6.109359 ACAATGGTGCTATCTTAGAAGTGTC 58.891 40.000 0.00 0.00 0.00 3.67
278 279 6.054860 ACAATGGTGCTATCTTAGAAGTGT 57.945 37.500 0.00 0.00 0.00 3.55
279 280 7.041721 TGTACAATGGTGCTATCTTAGAAGTG 58.958 38.462 0.00 0.00 0.00 3.16
280 281 7.182817 TGTACAATGGTGCTATCTTAGAAGT 57.817 36.000 0.00 0.00 0.00 3.01
281 282 7.307632 GCATGTACAATGGTGCTATCTTAGAAG 60.308 40.741 11.12 0.00 34.85 2.85
282 283 6.483307 GCATGTACAATGGTGCTATCTTAGAA 59.517 38.462 11.12 0.00 34.85 2.10
283 284 5.991606 GCATGTACAATGGTGCTATCTTAGA 59.008 40.000 11.12 0.00 34.85 2.10
284 285 5.180117 GGCATGTACAATGGTGCTATCTTAG 59.820 44.000 16.47 0.00 37.70 2.18
285 286 5.063204 GGCATGTACAATGGTGCTATCTTA 58.937 41.667 16.47 0.00 37.70 2.10
286 287 3.885297 GGCATGTACAATGGTGCTATCTT 59.115 43.478 16.47 0.00 37.70 2.40
287 288 3.480470 GGCATGTACAATGGTGCTATCT 58.520 45.455 16.47 0.00 37.70 1.98
288 289 2.554032 GGGCATGTACAATGGTGCTATC 59.446 50.000 16.47 3.12 37.70 2.08
289 290 2.175499 AGGGCATGTACAATGGTGCTAT 59.825 45.455 16.47 5.35 37.70 2.97
290 291 1.563879 AGGGCATGTACAATGGTGCTA 59.436 47.619 16.47 0.00 37.70 3.49
291 292 0.332632 AGGGCATGTACAATGGTGCT 59.667 50.000 16.47 0.00 37.70 4.40
292 293 2.051334 TAGGGCATGTACAATGGTGC 57.949 50.000 10.12 10.12 36.88 5.01
293 294 7.994425 TTATATTAGGGCATGTACAATGGTG 57.006 36.000 0.00 0.00 0.00 4.17
294 295 9.600432 ATTTTATATTAGGGCATGTACAATGGT 57.400 29.630 0.00 0.00 0.00 3.55
322 323 7.836842 AGGAAAATTATCCGCTGTAAAAATGT 58.163 30.769 0.00 0.00 44.60 2.71
340 341 4.910913 TGGAAAGGGGCTAAAAAGGAAAAT 59.089 37.500 0.00 0.00 0.00 1.82
388 390 3.555377 GGATCTCATCCTGACTGATGCTG 60.555 52.174 0.00 0.00 46.19 4.41
412 414 4.097863 GCGTTTTTCCCGGGCTCG 62.098 66.667 18.49 15.96 0.00 5.03
548 550 1.929088 TCCTCCTCCTCGGTCTCCA 60.929 63.158 0.00 0.00 0.00 3.86
576 578 1.330655 ACTTCCTCGCGATCCATGGT 61.331 55.000 10.36 1.32 0.00 3.55
633 635 2.487934 CTAACCATGATCGCCAGGAAG 58.512 52.381 0.00 0.00 0.00 3.46
760 762 2.040178 GCGGAGGAAGATAAAGAGGGA 58.960 52.381 0.00 0.00 0.00 4.20
762 764 1.269831 CGGCGGAGGAAGATAAAGAGG 60.270 57.143 0.00 0.00 0.00 3.69
800 802 0.179121 ACATGGCGCATGCAAGATTG 60.179 50.000 19.57 10.43 44.80 2.67
828 830 5.522456 TCTCGCCATGCATGAATTAAATTC 58.478 37.500 28.31 4.46 39.70 2.17
832 834 4.198530 TCTTCTCGCCATGCATGAATTAA 58.801 39.130 28.31 13.35 0.00 1.40
840 842 1.159285 CAAGTTCTTCTCGCCATGCA 58.841 50.000 0.00 0.00 0.00 3.96
841 843 0.179179 GCAAGTTCTTCTCGCCATGC 60.179 55.000 0.00 0.00 0.00 4.06
842 844 0.095935 CGCAAGTTCTTCTCGCCATG 59.904 55.000 0.00 0.00 0.00 3.66
843 845 2.460330 CGCAAGTTCTTCTCGCCAT 58.540 52.632 0.00 0.00 0.00 4.40
861 863 4.051237 GCCTTTGGTGTTCAATCTTCAAC 58.949 43.478 0.00 0.00 34.98 3.18
862 864 3.069443 GGCCTTTGGTGTTCAATCTTCAA 59.931 43.478 0.00 0.00 34.98 2.69
863 865 2.627699 GGCCTTTGGTGTTCAATCTTCA 59.372 45.455 0.00 0.00 34.98 3.02
864 866 2.627699 TGGCCTTTGGTGTTCAATCTTC 59.372 45.455 3.32 0.00 34.98 2.87
865 867 2.676748 TGGCCTTTGGTGTTCAATCTT 58.323 42.857 3.32 0.00 34.98 2.40
866 868 2.380064 TGGCCTTTGGTGTTCAATCT 57.620 45.000 3.32 0.00 34.98 2.40
867 869 3.588955 GATTGGCCTTTGGTGTTCAATC 58.411 45.455 3.32 0.00 34.98 2.67
892 902 0.527113 TGAGTTCATGGCAAATGGCG 59.473 50.000 0.00 0.00 46.16 5.69
920 931 0.747255 ACGAGATGCGCAATAGGAGT 59.253 50.000 17.11 7.52 46.04 3.85
921 932 1.135046 CACGAGATGCGCAATAGGAG 58.865 55.000 17.11 6.80 46.04 3.69
922 933 0.875908 GCACGAGATGCGCAATAGGA 60.876 55.000 17.11 0.00 46.55 2.94
923 934 1.566563 GCACGAGATGCGCAATAGG 59.433 57.895 17.11 7.31 46.55 2.57
939 950 4.455533 CAGTTAACTGATTAAGCACCAGCA 59.544 41.667 28.17 0.00 46.59 4.41
952 963 7.016858 ACCCTAATTTGGAGTACAGTTAACTGA 59.983 37.037 36.14 19.80 46.59 3.41
954 965 7.325725 ACCCTAATTTGGAGTACAGTTAACT 57.674 36.000 7.57 1.12 0.00 2.24
955 966 9.506018 TTTACCCTAATTTGGAGTACAGTTAAC 57.494 33.333 7.57 0.00 0.00 2.01
956 967 9.729281 CTTTACCCTAATTTGGAGTACAGTTAA 57.271 33.333 7.57 0.00 0.00 2.01
957 968 9.103582 TCTTTACCCTAATTTGGAGTACAGTTA 57.896 33.333 7.57 0.00 0.00 2.24
958 969 7.981142 TCTTTACCCTAATTTGGAGTACAGTT 58.019 34.615 7.57 0.00 0.00 3.16
960 971 7.048512 CCTCTTTACCCTAATTTGGAGTACAG 58.951 42.308 7.57 9.88 0.00 2.74
961 972 6.577638 GCCTCTTTACCCTAATTTGGAGTACA 60.578 42.308 7.57 1.47 0.00 2.90
962 973 5.821470 GCCTCTTTACCCTAATTTGGAGTAC 59.179 44.000 7.57 0.00 0.00 2.73
963 974 5.395990 CGCCTCTTTACCCTAATTTGGAGTA 60.396 44.000 7.57 5.51 0.00 2.59
964 975 4.625564 CGCCTCTTTACCCTAATTTGGAGT 60.626 45.833 7.57 6.42 0.00 3.85
965 976 3.877508 CGCCTCTTTACCCTAATTTGGAG 59.122 47.826 7.57 0.61 0.00 3.86
966 977 3.881220 CGCCTCTTTACCCTAATTTGGA 58.119 45.455 7.57 0.00 0.00 3.53
974 996 3.646736 AAATTAGCGCCTCTTTACCCT 57.353 42.857 2.29 0.00 0.00 4.34
978 1000 7.171508 CACATGAGATAAATTAGCGCCTCTTTA 59.828 37.037 2.29 6.06 0.00 1.85
979 1001 6.017605 CACATGAGATAAATTAGCGCCTCTTT 60.018 38.462 2.29 3.69 0.00 2.52
990 1012 5.047164 TGCAAGGCAACACATGAGATAAATT 60.047 36.000 0.00 0.00 34.76 1.82
995 1017 1.816835 CTGCAAGGCAACACATGAGAT 59.183 47.619 0.00 0.00 38.41 2.75
1001 1023 0.961019 GGATTCTGCAAGGCAACACA 59.039 50.000 0.00 0.00 38.41 3.72
1090 1112 0.401395 TTGAGGTGGGAGGTGGACTT 60.401 55.000 0.00 0.00 0.00 3.01
1233 1255 2.126502 GTGCCATTGCCGTTTCCG 60.127 61.111 0.00 0.00 36.33 4.30
1293 1321 1.343431 GGTTCCCTAGGCCCCTGTAC 61.343 65.000 2.05 0.00 0.00 2.90
1456 1484 1.305046 TCAGGTTCTCGAGGTCCCC 60.305 63.158 13.56 7.48 0.00 4.81
1695 1726 0.394488 TGTCGAGCTCCTCCTGGTAG 60.394 60.000 8.47 0.00 34.23 3.18
1810 1841 4.868734 GTCCGAATCTTTCAGGTACGAATT 59.131 41.667 0.00 0.00 0.00 2.17
2265 2326 2.741092 GGCGTGGTGAGGTTCTCA 59.259 61.111 0.00 0.00 38.25 3.27
2376 2452 2.045926 ACATGGGGCACGAGCTTC 60.046 61.111 4.48 0.00 41.70 3.86
2388 2464 4.758251 TCGCAGTGCCGGACATGG 62.758 66.667 5.05 0.49 0.00 3.66
2502 2585 5.466728 ACATGCCTAATTGCGTAGTAAGATG 59.533 40.000 0.00 0.00 34.31 2.90
2541 2628 8.137437 CACCAATAGGCAATTACCTCTTTTATG 58.863 37.037 0.00 0.00 41.50 1.90
2560 2647 7.759489 AGTGATCAAACTTTTAGCACCAATA 57.241 32.000 0.00 0.00 0.00 1.90
2686 2774 2.035469 ATTGCGGCCCATGACACA 59.965 55.556 0.00 0.00 0.00 3.72
2741 2830 6.204882 CAGGAAATATCTAGGGGCTTTTAACG 59.795 42.308 0.00 0.00 0.00 3.18
2796 2886 3.647590 ACAAAAATGAAGGGACATGCCTT 59.352 39.130 4.07 4.07 36.66 4.35
2842 2949 1.656095 GTCGAGCCGCTATAATGCATC 59.344 52.381 0.00 0.00 0.00 3.91
2869 2976 6.154706 TCAGTCTACATTTTTCCCTAGGAGTC 59.845 42.308 11.48 0.00 31.21 3.36
2871 2978 6.546428 TCAGTCTACATTTTTCCCTAGGAG 57.454 41.667 11.48 0.00 31.21 3.69
2872 2979 6.672218 TCATCAGTCTACATTTTTCCCTAGGA 59.328 38.462 11.48 0.00 0.00 2.94
2873 2980 6.889198 TCATCAGTCTACATTTTTCCCTAGG 58.111 40.000 0.06 0.06 0.00 3.02
2874 2981 8.792830 TTTCATCAGTCTACATTTTTCCCTAG 57.207 34.615 0.00 0.00 0.00 3.02
2875 2982 8.602424 TCTTTCATCAGTCTACATTTTTCCCTA 58.398 33.333 0.00 0.00 0.00 3.53
2876 2983 7.461749 TCTTTCATCAGTCTACATTTTTCCCT 58.538 34.615 0.00 0.00 0.00 4.20
2885 2992 6.350528 GGTCAGTGATCTTTCATCAGTCTACA 60.351 42.308 0.00 0.00 33.56 2.74
2887 2994 5.127845 GGGTCAGTGATCTTTCATCAGTCTA 59.872 44.000 2.82 0.00 33.56 2.59
2892 2999 2.677902 GCGGGTCAGTGATCTTTCATCA 60.678 50.000 2.82 0.00 33.56 3.07
2893 3000 1.936547 GCGGGTCAGTGATCTTTCATC 59.063 52.381 2.82 0.00 33.56 2.92
2932 3039 3.377172 GTGATACGGCAGCATACCTTTTT 59.623 43.478 0.00 0.00 0.00 1.94
2933 3040 2.943033 GTGATACGGCAGCATACCTTTT 59.057 45.455 0.00 0.00 0.00 2.27
2934 3041 2.093181 TGTGATACGGCAGCATACCTTT 60.093 45.455 0.00 0.00 0.00 3.11
2935 3042 1.484653 TGTGATACGGCAGCATACCTT 59.515 47.619 0.00 0.00 0.00 3.50
3105 3212 7.849804 AGAATGTACTGGTAGTAATTTGCAG 57.150 36.000 0.00 0.00 31.62 4.41
3133 3241 2.030401 CGCGACCGTCCATTTTGGA 61.030 57.895 0.00 0.00 45.98 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.