Multiple sequence alignment - TraesCS7A01G169700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G169700 chr7A 100.000 2971 0 0 1 2971 126121062 126124032 0.000000e+00 5487.0
1 TraesCS7A01G169700 chr7A 96.791 187 4 2 2123 2307 127665312 127665126 8.000000e-81 311.0
2 TraesCS7A01G169700 chr7A 96.791 187 5 1 2121 2306 547107133 547107319 8.000000e-81 311.0
3 TraesCS7A01G169700 chr7A 97.268 183 4 1 2124 2305 554478870 554478688 2.880000e-80 309.0
4 TraesCS7A01G169700 chr7A 95.238 189 8 1 2123 2310 35526975 35526787 6.230000e-77 298.0
5 TraesCS7A01G169700 chr7A 95.699 186 7 1 2124 2308 691149201 691149386 6.230000e-77 298.0
6 TraesCS7A01G169700 chr7A 92.222 180 14 0 421 600 212992691 212992870 3.800000e-64 255.0
7 TraesCS7A01G169700 chr7D 88.711 1497 108 39 661 2123 123218822 123220291 0.000000e+00 1772.0
8 TraesCS7A01G169700 chr7D 95.504 645 26 3 2328 2971 123220340 123220982 0.000000e+00 1027.0
9 TraesCS7A01G169700 chr7D 88.471 425 23 5 1 425 123217849 123218247 9.570000e-135 490.0
10 TraesCS7A01G169700 chr7B 86.942 1210 86 36 946 2123 84388655 84389824 0.000000e+00 1293.0
11 TraesCS7A01G169700 chr7B 91.783 645 42 9 2328 2969 84389873 84390509 0.000000e+00 887.0
12 TraesCS7A01G169700 chr7B 92.757 497 29 6 2330 2824 84486256 84486747 0.000000e+00 712.0
13 TraesCS7A01G169700 chr7B 89.134 543 42 8 1033 1563 84463036 84463573 0.000000e+00 660.0
14 TraesCS7A01G169700 chr7B 89.526 401 40 2 19 418 84459861 84460260 9.500000e-140 507.0
15 TraesCS7A01G169700 chr7B 88.131 337 33 5 1559 1889 84485679 84486014 7.720000e-106 394.0
16 TraesCS7A01G169700 chr7B 87.755 196 24 0 407 602 405852838 405852643 2.300000e-56 230.0
17 TraesCS7A01G169700 chr5A 96.335 191 5 2 2124 2312 708582579 708582769 2.220000e-81 313.0
18 TraesCS7A01G169700 chr5A 81.604 212 35 3 1414 1623 453519566 453519775 3.940000e-39 172.0
19 TraesCS7A01G169700 chr1A 97.297 185 3 2 2124 2307 441754251 441754068 2.220000e-81 313.0
20 TraesCS7A01G169700 chr1A 95.676 185 7 1 2123 2306 574481071 574480887 2.240000e-76 296.0
21 TraesCS7A01G169700 chr1A 91.398 186 15 1 418 602 52970924 52970739 1.370000e-63 254.0
22 TraesCS7A01G169700 chr3A 96.774 186 5 1 2126 2310 720212125 720211940 2.880000e-80 309.0
23 TraesCS7A01G169700 chr3A 91.111 180 16 0 420 599 502623778 502623957 8.230000e-61 244.0
24 TraesCS7A01G169700 chr3A 82.524 206 32 3 1420 1623 398879727 398879524 8.460000e-41 178.0
25 TraesCS7A01G169700 chr4A 91.304 184 16 0 419 602 563123234 563123051 4.920000e-63 252.0
26 TraesCS7A01G169700 chr4A 76.991 226 36 11 711 935 100636543 100636753 6.730000e-22 115.0
27 TraesCS7A01G169700 chr5D 90.659 182 17 0 421 602 30329495 30329676 2.960000e-60 243.0
28 TraesCS7A01G169700 chr5D 90.217 184 18 0 419 602 270919808 270919625 1.060000e-59 241.0
29 TraesCS7A01G169700 chr5D 81.553 206 34 3 1420 1623 352454334 352454131 1.830000e-37 167.0
30 TraesCS7A01G169700 chr5D 83.908 87 12 2 846 931 1721667 1721582 6.830000e-12 82.4
31 TraesCS7A01G169700 chr2A 90.659 182 17 0 421 602 483648541 483648360 2.960000e-60 243.0
32 TraesCS7A01G169700 chr2A 90.659 182 16 1 421 602 136349721 136349541 1.060000e-59 241.0
33 TraesCS7A01G169700 chr4D 81.579 228 33 8 709 936 101018641 101018859 2.350000e-41 180.0
34 TraesCS7A01G169700 chr6A 82.524 206 32 3 1420 1623 116813142 116812939 8.460000e-41 178.0
35 TraesCS7A01G169700 chr5B 82.524 206 32 3 1420 1623 415127643 415127440 8.460000e-41 178.0
36 TraesCS7A01G169700 chr2D 77.778 216 33 8 708 922 435050892 435050691 5.200000e-23 119.0
37 TraesCS7A01G169700 chr6B 76.147 218 35 5 701 917 224250621 224250822 6.780000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G169700 chr7A 126121062 126124032 2970 False 5487.000000 5487 100.000000 1 2971 1 chr7A.!!$F1 2970
1 TraesCS7A01G169700 chr7D 123217849 123220982 3133 False 1096.333333 1772 90.895333 1 2971 3 chr7D.!!$F1 2970
2 TraesCS7A01G169700 chr7B 84388655 84390509 1854 False 1090.000000 1293 89.362500 946 2969 2 chr7B.!!$F1 2023
3 TraesCS7A01G169700 chr7B 84459861 84463573 3712 False 583.500000 660 89.330000 19 1563 2 chr7B.!!$F2 1544
4 TraesCS7A01G169700 chr7B 84485679 84486747 1068 False 553.000000 712 90.444000 1559 2824 2 chr7B.!!$F3 1265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 558 0.035739 GGCCGGACAAAGGTAAGTGA 59.964 55.0 5.05 0.0 0.00 3.41 F
1689 4143 0.251916 ACTGCCCGCACTATGCTTAA 59.748 50.0 0.00 0.0 42.25 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 4407 0.103208 AAGCGAGTAGGCGAATGGAG 59.897 55.000 0.0 0.00 38.18 3.86 R
2640 5117 1.152819 CCAGTGGGCCATCAGGATG 60.153 63.158 10.7 2.24 36.89 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 4.142816 CGCTGTTCATAGAACTTCCCAAAG 60.143 45.833 10.79 0.42 38.54 2.77
108 109 0.685097 TTCCCAAAGCAGCTCGTACT 59.315 50.000 0.00 0.00 0.00 2.73
110 111 1.021390 CCCAAAGCAGCTCGTACTGG 61.021 60.000 0.00 0.00 38.16 4.00
154 155 1.747355 GGCCCACTCAAATGATCACTG 59.253 52.381 0.00 0.00 0.00 3.66
225 226 6.639563 TCTCACGATAGGAGAGATAGAGATG 58.360 44.000 0.00 0.00 43.37 2.90
228 229 7.227873 TCACGATAGGAGAGATAGAGATGTTT 58.772 38.462 0.00 0.00 43.77 2.83
312 314 4.195416 CCCTAGCTTTCATCACTCCTTTC 58.805 47.826 0.00 0.00 0.00 2.62
320 322 8.103305 AGCTTTCATCACTCCTTTCTATTTACA 58.897 33.333 0.00 0.00 0.00 2.41
337 339 8.031864 TCTATTTACAGTTCTTCTCTGCTTGAG 58.968 37.037 1.66 1.66 43.96 3.02
394 396 5.833406 TCTCTTGCAAATGTCACTTTCAA 57.167 34.783 0.00 0.00 0.00 2.69
400 402 5.581605 TGCAAATGTCACTTTCAACTTCTC 58.418 37.500 0.00 0.00 0.00 2.87
427 429 3.836949 GTGATAAGTGGCACCAATGTTG 58.163 45.455 15.27 0.00 0.00 3.33
438 440 2.276732 CCAATGTTGGGGATATCGCT 57.723 50.000 18.21 0.00 44.70 4.93
439 441 2.586425 CCAATGTTGGGGATATCGCTT 58.414 47.619 18.21 2.96 44.70 4.68
440 442 3.750371 CCAATGTTGGGGATATCGCTTA 58.250 45.455 18.21 6.48 44.70 3.09
441 443 4.335416 CCAATGTTGGGGATATCGCTTAT 58.665 43.478 18.21 6.34 44.70 1.73
442 444 4.396166 CCAATGTTGGGGATATCGCTTATC 59.604 45.833 18.21 8.56 44.70 1.75
443 445 3.313012 TGTTGGGGATATCGCTTATCG 57.687 47.619 18.21 0.00 38.08 2.92
444 446 2.028476 TGTTGGGGATATCGCTTATCGG 60.028 50.000 18.21 0.00 38.08 4.18
445 447 1.191535 TGGGGATATCGCTTATCGGG 58.808 55.000 18.21 0.00 38.08 5.14
446 448 1.272816 TGGGGATATCGCTTATCGGGA 60.273 52.381 18.21 0.00 38.08 5.14
447 449 1.829222 GGGGATATCGCTTATCGGGAA 59.171 52.381 18.21 0.00 38.08 3.97
448 450 2.418334 GGGGATATCGCTTATCGGGAAC 60.418 54.545 18.21 0.00 38.08 3.62
449 451 2.496470 GGGATATCGCTTATCGGGAACT 59.504 50.000 12.31 0.00 38.08 3.01
450 452 3.056035 GGGATATCGCTTATCGGGAACTT 60.056 47.826 12.31 0.00 38.08 2.66
451 453 4.159135 GGGATATCGCTTATCGGGAACTTA 59.841 45.833 12.31 0.00 38.08 2.24
452 454 5.163437 GGGATATCGCTTATCGGGAACTTAT 60.163 44.000 12.31 0.00 38.08 1.73
453 455 5.978322 GGATATCGCTTATCGGGAACTTATC 59.022 44.000 0.00 0.00 38.08 1.75
454 456 3.278367 TCGCTTATCGGGAACTTATCG 57.722 47.619 0.00 0.00 39.05 2.92
455 457 2.880268 TCGCTTATCGGGAACTTATCGA 59.120 45.455 0.00 0.00 39.05 3.59
456 458 3.504906 TCGCTTATCGGGAACTTATCGAT 59.495 43.478 2.16 2.16 44.39 3.59
457 459 3.852536 CGCTTATCGGGAACTTATCGATC 59.147 47.826 0.00 0.00 41.82 3.69
458 460 3.852536 GCTTATCGGGAACTTATCGATCG 59.147 47.826 9.36 9.36 41.82 3.69
459 461 4.379186 GCTTATCGGGAACTTATCGATCGA 60.379 45.833 21.86 21.86 41.82 3.59
460 462 3.555917 ATCGGGAACTTATCGATCGAC 57.444 47.619 22.06 6.26 39.05 4.20
461 463 1.605710 TCGGGAACTTATCGATCGACC 59.394 52.381 22.06 15.52 0.00 4.79
462 464 1.335689 CGGGAACTTATCGATCGACCC 60.336 57.143 22.06 22.59 0.00 4.46
463 465 1.684983 GGGAACTTATCGATCGACCCA 59.315 52.381 26.13 11.88 36.47 4.51
464 466 2.299297 GGGAACTTATCGATCGACCCAT 59.701 50.000 26.13 12.99 36.47 4.00
465 467 3.318017 GGAACTTATCGATCGACCCATG 58.682 50.000 22.06 12.73 0.00 3.66
466 468 3.005472 GGAACTTATCGATCGACCCATGA 59.995 47.826 22.06 0.00 0.00 3.07
467 469 4.322049 GGAACTTATCGATCGACCCATGAT 60.322 45.833 22.06 5.05 0.00 2.45
468 470 5.105877 GGAACTTATCGATCGACCCATGATA 60.106 44.000 22.06 3.93 0.00 2.15
469 471 5.977489 ACTTATCGATCGACCCATGATAA 57.023 39.130 22.06 11.96 32.37 1.75
471 473 3.876274 ATCGATCGACCCATGATAAGG 57.124 47.619 22.06 0.00 0.00 2.69
481 483 3.686016 CCCATGATAAGGGGTAAATCGG 58.314 50.000 0.00 0.00 42.90 4.18
482 484 3.081804 CCATGATAAGGGGTAAATCGGC 58.918 50.000 0.00 0.00 0.00 5.54
483 485 2.943036 TGATAAGGGGTAAATCGGCC 57.057 50.000 0.00 0.00 0.00 6.13
484 486 2.128535 TGATAAGGGGTAAATCGGCCA 58.871 47.619 2.24 0.00 0.00 5.36
485 487 2.510382 TGATAAGGGGTAAATCGGCCAA 59.490 45.455 2.24 0.00 0.00 4.52
486 488 3.139397 TGATAAGGGGTAAATCGGCCAAT 59.861 43.478 2.24 0.00 0.00 3.16
487 489 2.543037 AAGGGGTAAATCGGCCAATT 57.457 45.000 2.24 0.00 0.00 2.32
488 490 2.543037 AGGGGTAAATCGGCCAATTT 57.457 45.000 6.91 6.91 33.54 1.82
489 491 3.673543 AGGGGTAAATCGGCCAATTTA 57.326 42.857 4.68 4.68 31.50 1.40
490 492 4.193240 AGGGGTAAATCGGCCAATTTAT 57.807 40.909 11.96 0.00 34.54 1.40
491 493 4.552674 AGGGGTAAATCGGCCAATTTATT 58.447 39.130 11.96 0.00 34.54 1.40
492 494 4.343814 AGGGGTAAATCGGCCAATTTATTG 59.656 41.667 11.96 0.00 34.54 1.90
513 515 2.785679 GCATATCGGCCAATTTATCGC 58.214 47.619 2.24 0.00 0.00 4.58
514 516 2.477863 GCATATCGGCCAATTTATCGCC 60.478 50.000 2.24 0.00 39.41 5.54
515 517 2.552599 TATCGGCCAATTTATCGCCA 57.447 45.000 2.24 0.00 43.17 5.69
516 518 1.909700 ATCGGCCAATTTATCGCCAT 58.090 45.000 2.24 0.00 43.17 4.40
517 519 2.552599 TCGGCCAATTTATCGCCATA 57.447 45.000 2.24 0.00 43.17 2.74
518 520 3.066291 TCGGCCAATTTATCGCCATAT 57.934 42.857 2.24 0.00 43.17 1.78
519 521 3.006940 TCGGCCAATTTATCGCCATATC 58.993 45.455 2.24 0.00 43.17 1.63
520 522 2.223021 CGGCCAATTTATCGCCATATCG 60.223 50.000 2.24 0.00 43.17 2.92
521 523 2.097466 GGCCAATTTATCGCCATATCGG 59.903 50.000 0.00 0.00 42.52 4.18
536 538 6.771188 CCATATCGGCCGATAAATCTTATC 57.229 41.667 42.37 0.00 40.07 1.75
537 539 5.402568 CCATATCGGCCGATAAATCTTATCG 59.597 44.000 42.37 20.50 44.42 2.92
543 545 3.226346 CGATAAATCTTATCGGCCGGA 57.774 47.619 27.83 15.37 42.01 5.14
544 546 2.921754 CGATAAATCTTATCGGCCGGAC 59.078 50.000 27.83 0.00 42.01 4.79
545 547 3.613193 CGATAAATCTTATCGGCCGGACA 60.613 47.826 27.83 6.34 42.01 4.02
546 548 2.702592 AAATCTTATCGGCCGGACAA 57.297 45.000 27.83 15.49 0.00 3.18
547 549 2.702592 AATCTTATCGGCCGGACAAA 57.297 45.000 27.83 13.26 0.00 2.83
548 550 2.240493 ATCTTATCGGCCGGACAAAG 57.760 50.000 27.83 21.53 0.00 2.77
549 551 0.177141 TCTTATCGGCCGGACAAAGG 59.823 55.000 27.83 9.47 0.00 3.11
550 552 0.107848 CTTATCGGCCGGACAAAGGT 60.108 55.000 27.83 4.00 0.00 3.50
551 553 1.137479 CTTATCGGCCGGACAAAGGTA 59.863 52.381 27.83 1.69 0.00 3.08
552 554 1.193323 TATCGGCCGGACAAAGGTAA 58.807 50.000 27.83 0.77 0.00 2.85
553 555 0.107848 ATCGGCCGGACAAAGGTAAG 60.108 55.000 27.83 0.00 0.00 2.34
554 556 1.004200 CGGCCGGACAAAGGTAAGT 60.004 57.895 20.10 0.00 0.00 2.24
555 557 1.296056 CGGCCGGACAAAGGTAAGTG 61.296 60.000 20.10 0.00 0.00 3.16
556 558 0.035739 GGCCGGACAAAGGTAAGTGA 59.964 55.000 5.05 0.00 0.00 3.41
557 559 1.339727 GGCCGGACAAAGGTAAGTGAT 60.340 52.381 5.05 0.00 0.00 3.06
558 560 2.093341 GGCCGGACAAAGGTAAGTGATA 60.093 50.000 5.05 0.00 0.00 2.15
559 561 3.602483 GCCGGACAAAGGTAAGTGATAA 58.398 45.455 5.05 0.00 0.00 1.75
560 562 4.004982 GCCGGACAAAGGTAAGTGATAAA 58.995 43.478 5.05 0.00 0.00 1.40
561 563 4.638865 GCCGGACAAAGGTAAGTGATAAAT 59.361 41.667 5.05 0.00 0.00 1.40
562 564 5.220796 GCCGGACAAAGGTAAGTGATAAATC 60.221 44.000 5.05 0.00 0.00 2.17
563 565 5.006358 CCGGACAAAGGTAAGTGATAAATCG 59.994 44.000 0.00 0.00 0.00 3.34
564 566 5.006358 CGGACAAAGGTAAGTGATAAATCGG 59.994 44.000 0.00 0.00 0.00 4.18
565 567 5.220796 GGACAAAGGTAAGTGATAAATCGGC 60.221 44.000 0.00 0.00 0.00 5.54
566 568 5.497474 ACAAAGGTAAGTGATAAATCGGCT 58.503 37.500 0.00 0.00 0.00 5.52
567 569 5.354234 ACAAAGGTAAGTGATAAATCGGCTG 59.646 40.000 0.00 0.00 0.00 4.85
568 570 5.353394 AAGGTAAGTGATAAATCGGCTGA 57.647 39.130 0.00 0.00 0.00 4.26
569 571 5.552870 AGGTAAGTGATAAATCGGCTGAT 57.447 39.130 0.90 0.90 35.98 2.90
570 572 5.930135 AGGTAAGTGATAAATCGGCTGATT 58.070 37.500 15.26 15.26 46.75 2.57
583 585 6.668541 ATCGGCTGATTTATCGGAATATTG 57.331 37.500 0.90 0.00 35.13 1.90
584 586 4.935205 TCGGCTGATTTATCGGAATATTGG 59.065 41.667 2.75 0.00 35.13 3.16
585 587 4.935205 CGGCTGATTTATCGGAATATTGGA 59.065 41.667 2.75 0.00 35.13 3.53
586 588 5.411361 CGGCTGATTTATCGGAATATTGGAA 59.589 40.000 2.75 0.00 35.13 3.53
587 589 6.402550 CGGCTGATTTATCGGAATATTGGAAG 60.403 42.308 2.75 0.00 35.13 3.46
588 590 6.655003 GGCTGATTTATCGGAATATTGGAAGA 59.345 38.462 2.75 0.00 35.13 2.87
589 591 7.337942 GGCTGATTTATCGGAATATTGGAAGAT 59.662 37.037 2.75 0.00 35.13 2.40
590 592 9.383519 GCTGATTTATCGGAATATTGGAAGATA 57.616 33.333 2.75 0.00 35.13 1.98
598 600 8.833231 TCGGAATATTGGAAGATATCTTGAAC 57.167 34.615 22.61 12.46 36.11 3.18
599 601 8.428852 TCGGAATATTGGAAGATATCTTGAACA 58.571 33.333 22.61 14.71 36.11 3.18
600 602 8.715998 CGGAATATTGGAAGATATCTTGAACAG 58.284 37.037 22.61 2.49 36.11 3.16
601 603 9.566432 GGAATATTGGAAGATATCTTGAACAGT 57.434 33.333 22.61 15.74 36.11 3.55
606 608 8.777865 TTGGAAGATATCTTGAACAGTAAGTG 57.222 34.615 22.61 0.00 36.11 3.16
607 609 7.331026 TGGAAGATATCTTGAACAGTAAGTGG 58.669 38.462 22.61 0.00 36.11 4.00
608 610 6.258947 GGAAGATATCTTGAACAGTAAGTGGC 59.741 42.308 22.61 2.94 36.11 5.01
609 611 6.299805 AGATATCTTGAACAGTAAGTGGCA 57.700 37.500 0.00 0.00 0.00 4.92
610 612 6.109359 AGATATCTTGAACAGTAAGTGGCAC 58.891 40.000 10.29 10.29 0.00 5.01
657 660 2.451490 TGAGTTTTGTGCCTTTGGTCA 58.549 42.857 0.00 0.00 0.00 4.02
682 1220 4.202441 ACCAGCCACTAAGATTTAGCATG 58.798 43.478 0.00 0.00 0.00 4.06
686 1224 5.236047 CAGCCACTAAGATTTAGCATGTCTC 59.764 44.000 0.00 0.00 0.00 3.36
691 1229 6.815641 CACTAAGATTTAGCATGTCTCTGTGT 59.184 38.462 0.00 0.00 0.00 3.72
692 1230 6.815641 ACTAAGATTTAGCATGTCTCTGTGTG 59.184 38.462 0.00 0.00 0.00 3.82
694 1232 3.769739 TTTAGCATGTCTCTGTGTGGT 57.230 42.857 0.00 0.00 0.00 4.16
695 1233 2.749280 TAGCATGTCTCTGTGTGGTG 57.251 50.000 0.00 0.00 0.00 4.17
696 1234 1.051008 AGCATGTCTCTGTGTGGTGA 58.949 50.000 0.00 0.00 0.00 4.02
697 1235 1.151668 GCATGTCTCTGTGTGGTGAC 58.848 55.000 0.00 0.00 0.00 3.67
698 1236 1.800805 CATGTCTCTGTGTGGTGACC 58.199 55.000 0.00 0.00 0.00 4.02
699 1237 1.345741 CATGTCTCTGTGTGGTGACCT 59.654 52.381 2.11 0.00 0.00 3.85
700 1238 2.375014 TGTCTCTGTGTGGTGACCTA 57.625 50.000 2.11 0.00 0.00 3.08
705 1243 5.047306 TGTCTCTGTGTGGTGACCTAATAAG 60.047 44.000 2.11 0.00 0.00 1.73
721 1259 9.614792 GACCTAATAAGTCCAAATGATAAGTGT 57.385 33.333 0.00 0.00 0.00 3.55
728 1266 4.451096 GTCCAAATGATAAGTGTCACACGT 59.549 41.667 1.22 1.06 39.64 4.49
746 1284 1.299850 TGTGTCACGAAGCACTCCG 60.300 57.895 0.00 0.00 36.63 4.63
749 1287 1.215647 GTCACGAAGCACTCCGGAT 59.784 57.895 3.57 0.00 0.00 4.18
755 1293 0.526524 GAAGCACTCCGGATCTGACG 60.527 60.000 3.57 0.00 0.00 4.35
758 1296 1.078759 GCACTCCGGATCTGACGTTG 61.079 60.000 3.57 0.00 0.00 4.10
763 1301 3.179830 CTCCGGATCTGACGTTGTTTAG 58.820 50.000 3.57 0.00 0.00 1.85
855 1812 1.867865 TGTCATGCGCGACAACTAAAA 59.132 42.857 12.10 0.00 42.82 1.52
878 1835 3.592059 TGCCATCCTCGTGTTACTAAAC 58.408 45.455 0.00 0.00 36.07 2.01
881 1910 4.092968 GCCATCCTCGTGTTACTAAACTTG 59.907 45.833 0.00 0.00 36.51 3.16
913 1942 9.528018 AAAAATGTTCGAAGTTGTCATATGTTT 57.472 25.926 0.00 0.00 0.00 2.83
914 1943 8.506140 AAATGTTCGAAGTTGTCATATGTTTG 57.494 30.769 0.00 0.00 0.00 2.93
919 1948 4.320129 CGAAGTTGTCATATGTTTGTGCCA 60.320 41.667 1.90 0.00 0.00 4.92
920 1949 4.503741 AGTTGTCATATGTTTGTGCCAC 57.496 40.909 1.90 0.00 0.00 5.01
921 1950 3.888323 AGTTGTCATATGTTTGTGCCACA 59.112 39.130 1.90 0.00 0.00 4.17
923 1952 5.709631 AGTTGTCATATGTTTGTGCCACATA 59.290 36.000 0.00 0.00 40.56 2.29
924 1953 6.377996 AGTTGTCATATGTTTGTGCCACATAT 59.622 34.615 0.00 0.00 45.02 1.78
925 1954 7.555914 AGTTGTCATATGTTTGTGCCACATATA 59.444 33.333 0.00 0.00 43.18 0.86
926 1955 8.352201 GTTGTCATATGTTTGTGCCACATATAT 58.648 33.333 0.00 0.17 43.18 0.86
927 1956 7.873910 TGTCATATGTTTGTGCCACATATATG 58.126 34.615 20.16 20.16 43.18 1.78
928 1957 7.040548 TGTCATATGTTTGTGCCACATATATGG 60.041 37.037 22.92 0.00 43.18 2.74
981 2125 6.209589 CCAGGAGAGTAGCATAAATAGCACTA 59.790 42.308 0.00 0.00 0.00 2.74
1009 2153 4.532521 ACCTACCTCAGCTCAACAACTAAT 59.467 41.667 0.00 0.00 0.00 1.73
1036 2180 1.204704 CTCCATACGAGTGAAGCACCA 59.795 52.381 0.00 0.00 34.49 4.17
1240 3690 0.839277 TTCTCCATCCACATCGCCAT 59.161 50.000 0.00 0.00 0.00 4.40
1245 3695 1.596203 ATCCACATCGCCATCGCAG 60.596 57.895 0.00 0.00 35.26 5.18
1262 3712 4.840005 GCAGCCACCGGTCCTAGC 62.840 72.222 2.59 5.61 0.00 3.42
1303 3753 3.607163 CCGGTGCGGTTACTCCTA 58.393 61.111 0.00 0.00 42.73 2.94
1304 3754 1.892338 CCGGTGCGGTTACTCCTAA 59.108 57.895 0.00 0.00 42.73 2.69
1305 3755 0.462789 CCGGTGCGGTTACTCCTAAT 59.537 55.000 0.00 0.00 42.73 1.73
1306 3756 1.134610 CCGGTGCGGTTACTCCTAATT 60.135 52.381 0.00 0.00 42.73 1.40
1307 3757 2.199236 CGGTGCGGTTACTCCTAATTC 58.801 52.381 0.00 0.00 0.00 2.17
1311 3761 2.159198 TGCGGTTACTCCTAATTCGGTC 60.159 50.000 0.00 0.00 0.00 4.79
1325 3775 2.358247 GGTCACGATGCCGGTGTT 60.358 61.111 1.90 0.00 40.78 3.32
1393 3843 4.651008 TTGTCGTCGGCGTCCACC 62.651 66.667 10.18 0.00 39.49 4.61
1679 4133 1.549243 TTCTACCATCACTGCCCGCA 61.549 55.000 0.00 0.00 0.00 5.69
1689 4143 0.251916 ACTGCCCGCACTATGCTTAA 59.748 50.000 0.00 0.00 42.25 1.85
1691 4145 1.064060 CTGCCCGCACTATGCTTAAAC 59.936 52.381 0.00 0.00 42.25 2.01
1700 4154 4.442706 CACTATGCTTAAACGGGAGATGT 58.557 43.478 0.00 0.00 0.00 3.06
1702 4156 6.046593 CACTATGCTTAAACGGGAGATGTTA 58.953 40.000 0.00 0.00 0.00 2.41
1706 4162 4.634004 TGCTTAAACGGGAGATGTTACATG 59.366 41.667 1.24 0.00 0.00 3.21
1734 4195 4.024893 GTGAACGATGTATATGGTGCAAGG 60.025 45.833 0.00 0.00 33.03 3.61
1739 4200 5.827797 ACGATGTATATGGTGCAAGGAATTT 59.172 36.000 0.00 0.00 0.00 1.82
1740 4201 6.144854 CGATGTATATGGTGCAAGGAATTTG 58.855 40.000 0.00 0.00 39.88 2.32
1748 4209 0.881118 GCAAGGAATTTGAGCGTCCA 59.119 50.000 0.00 0.00 39.21 4.02
1803 4264 7.367285 GTTATAATTCTGCCACAACTCACAAA 58.633 34.615 0.00 0.00 0.00 2.83
1823 4284 4.623932 AAGGAGTGCATGTGTTCTCTTA 57.376 40.909 0.00 0.00 0.00 2.10
1826 4287 6.299805 AGGAGTGCATGTGTTCTCTTATTA 57.700 37.500 0.00 0.00 0.00 0.98
1870 4332 7.380333 CGCAGCATGTACAAATTCATATTTGAT 59.620 33.333 15.32 4.92 44.95 2.57
1894 4356 6.990798 TGTTCAAATGGCAGTCATAAATTCA 58.009 32.000 0.00 0.00 34.44 2.57
1933 4395 3.746108 GCAGTTGATTGCGAAACGA 57.254 47.368 0.00 0.00 33.90 3.85
1947 4409 3.146250 CGAAACGAAGACGCAAAATCTC 58.854 45.455 0.00 0.00 43.96 2.75
1957 4419 1.939934 CGCAAAATCTCCATTCGCCTA 59.060 47.619 0.00 0.00 0.00 3.93
1958 4420 2.286418 CGCAAAATCTCCATTCGCCTAC 60.286 50.000 0.00 0.00 0.00 3.18
1963 4425 0.752009 TCTCCATTCGCCTACTCGCT 60.752 55.000 0.00 0.00 0.00 4.93
1966 4428 1.752498 TCCATTCGCCTACTCGCTTAA 59.248 47.619 0.00 0.00 0.00 1.85
1967 4429 2.364324 TCCATTCGCCTACTCGCTTAAT 59.636 45.455 0.00 0.00 0.00 1.40
1968 4430 3.131396 CCATTCGCCTACTCGCTTAATT 58.869 45.455 0.00 0.00 0.00 1.40
1969 4431 4.038282 TCCATTCGCCTACTCGCTTAATTA 59.962 41.667 0.00 0.00 0.00 1.40
1970 4432 4.748102 CCATTCGCCTACTCGCTTAATTAA 59.252 41.667 0.00 0.00 0.00 1.40
1971 4433 5.408604 CCATTCGCCTACTCGCTTAATTAAT 59.591 40.000 0.00 0.00 0.00 1.40
2034 4501 3.927142 GGAGTAAGTTGTCGTCCATTCAG 59.073 47.826 0.00 0.00 0.00 3.02
2050 4521 2.516227 TCAGTCATCGGTCTTCCTCT 57.484 50.000 0.00 0.00 0.00 3.69
2055 4526 2.359531 GTCATCGGTCTTCCTCTTCGAT 59.640 50.000 0.00 0.00 40.57 3.59
2057 4528 2.421751 TCGGTCTTCCTCTTCGATCT 57.578 50.000 0.00 0.00 0.00 2.75
2058 4529 2.290464 TCGGTCTTCCTCTTCGATCTC 58.710 52.381 0.00 0.00 0.00 2.75
2059 4530 1.003331 CGGTCTTCCTCTTCGATCTCG 60.003 57.143 0.00 0.00 41.45 4.04
2071 4542 2.160205 TCGATCTCGACTGGAGTGTTT 58.840 47.619 0.00 0.00 44.22 2.83
2072 4543 2.161808 TCGATCTCGACTGGAGTGTTTC 59.838 50.000 0.00 0.00 44.22 2.78
2079 4550 1.873591 GACTGGAGTGTTTCACGCAAT 59.126 47.619 6.05 0.00 39.64 3.56
2087 4558 0.775861 GTTTCACGCAATTGCCGAAC 59.224 50.000 24.24 17.82 37.91 3.95
2091 4562 1.302511 ACGCAATTGCCGAACCTCT 60.303 52.632 24.24 0.62 37.91 3.69
2093 4564 0.454957 CGCAATTGCCGAACCTCTTG 60.455 55.000 24.24 2.60 37.91 3.02
2094 4565 0.733909 GCAATTGCCGAACCTCTTGC 60.734 55.000 20.06 0.00 34.31 4.01
2097 4572 2.684881 CAATTGCCGAACCTCTTGCTAT 59.315 45.455 0.00 0.00 0.00 2.97
2125 4600 9.996554 ATACAAGATTTGGTTTTTAAGAAAGGG 57.003 29.630 0.00 0.00 34.12 3.95
2127 4602 8.204160 ACAAGATTTGGTTTTTAAGAAAGGGAG 58.796 33.333 0.00 0.00 34.12 4.30
2128 4603 7.914427 AGATTTGGTTTTTAAGAAAGGGAGT 57.086 32.000 0.00 0.00 0.00 3.85
2129 4604 9.429109 AAGATTTGGTTTTTAAGAAAGGGAGTA 57.571 29.630 0.00 0.00 0.00 2.59
2130 4605 8.857098 AGATTTGGTTTTTAAGAAAGGGAGTAC 58.143 33.333 0.00 0.00 0.00 2.73
2131 4606 6.964807 TTGGTTTTTAAGAAAGGGAGTACC 57.035 37.500 0.00 0.00 40.67 3.34
2165 4640 9.545105 CATCTAGATGAGATATAATTTGGCCTC 57.455 37.037 25.78 0.00 43.52 4.70
2166 4641 8.670521 TCTAGATGAGATATAATTTGGCCTCA 57.329 34.615 3.32 0.00 35.48 3.86
2170 4645 8.388589 AGATGAGATATAATTTGGCCTCATTCA 58.611 33.333 3.32 0.00 40.28 2.57
2175 4650 9.370930 AGATATAATTTGGCCTCATTCATTTGA 57.629 29.630 3.32 0.00 0.00 2.69
2180 4655 4.952071 TGGCCTCATTCATTTGAAAACA 57.048 36.364 3.32 0.00 37.61 2.83
2181 4656 5.287674 TGGCCTCATTCATTTGAAAACAA 57.712 34.783 3.32 0.00 37.61 2.83
2182 4657 5.299148 TGGCCTCATTCATTTGAAAACAAG 58.701 37.500 3.32 0.00 37.61 3.16
2183 4658 5.070180 TGGCCTCATTCATTTGAAAACAAGA 59.930 36.000 3.32 0.00 37.61 3.02
2184 4659 5.990996 GGCCTCATTCATTTGAAAACAAGAA 59.009 36.000 0.00 0.00 37.61 2.52
2185 4660 6.073602 GGCCTCATTCATTTGAAAACAAGAAC 60.074 38.462 0.00 0.00 37.61 3.01
2186 4661 6.479660 GCCTCATTCATTTGAAAACAAGAACA 59.520 34.615 0.00 0.00 37.61 3.18
2187 4662 7.172019 GCCTCATTCATTTGAAAACAAGAACAT 59.828 33.333 0.00 0.00 37.61 2.71
2199 4674 8.233868 TGAAAACAAGAACATATAACATCCACG 58.766 33.333 0.00 0.00 0.00 4.94
2200 4675 7.681939 AAACAAGAACATATAACATCCACGT 57.318 32.000 0.00 0.00 0.00 4.49
2201 4676 6.903883 ACAAGAACATATAACATCCACGTC 57.096 37.500 0.00 0.00 0.00 4.34
2202 4677 6.403049 ACAAGAACATATAACATCCACGTCA 58.597 36.000 0.00 0.00 0.00 4.35
2203 4678 6.535150 ACAAGAACATATAACATCCACGTCAG 59.465 38.462 0.00 0.00 0.00 3.51
2204 4679 5.050490 AGAACATATAACATCCACGTCAGC 58.950 41.667 0.00 0.00 0.00 4.26
2205 4680 4.400529 ACATATAACATCCACGTCAGCA 57.599 40.909 0.00 0.00 0.00 4.41
2206 4681 4.119862 ACATATAACATCCACGTCAGCAC 58.880 43.478 0.00 0.00 0.00 4.40
2207 4682 2.760634 ATAACATCCACGTCAGCACA 57.239 45.000 0.00 0.00 0.00 4.57
2208 4683 1.790755 TAACATCCACGTCAGCACAC 58.209 50.000 0.00 0.00 0.00 3.82
2209 4684 0.179059 AACATCCACGTCAGCACACA 60.179 50.000 0.00 0.00 0.00 3.72
2210 4685 0.880278 ACATCCACGTCAGCACACAC 60.880 55.000 0.00 0.00 0.00 3.82
2211 4686 1.664649 ATCCACGTCAGCACACACG 60.665 57.895 0.00 0.00 41.90 4.49
2212 4687 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
2213 4688 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
2214 4689 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
2215 4690 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
2216 4691 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
2217 4692 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
2218 4693 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
2219 4694 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
2220 4695 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
2221 4696 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
2222 4697 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
2223 4698 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
2224 4699 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
2225 4700 3.002656 GCACACACGCATCTTATAGCATT 59.997 43.478 0.00 0.00 0.00 3.56
2226 4701 4.496341 GCACACACGCATCTTATAGCATTT 60.496 41.667 0.00 0.00 0.00 2.32
2227 4702 5.572211 CACACACGCATCTTATAGCATTTT 58.428 37.500 0.00 0.00 0.00 1.82
2228 4703 6.714492 CACACACGCATCTTATAGCATTTTA 58.286 36.000 0.00 0.00 0.00 1.52
2229 4704 7.355017 CACACACGCATCTTATAGCATTTTAT 58.645 34.615 0.00 0.00 0.00 1.40
2230 4705 8.495148 CACACACGCATCTTATAGCATTTTATA 58.505 33.333 0.00 0.00 0.00 0.98
2231 4706 8.712363 ACACACGCATCTTATAGCATTTTATAG 58.288 33.333 0.00 0.00 0.00 1.31
2232 4707 7.689812 CACACGCATCTTATAGCATTTTATAGC 59.310 37.037 0.00 0.00 0.00 2.97
2233 4708 7.387673 ACACGCATCTTATAGCATTTTATAGCA 59.612 33.333 0.00 0.00 0.00 3.49
2234 4709 8.393366 CACGCATCTTATAGCATTTTATAGCAT 58.607 33.333 0.00 0.00 0.00 3.79
2235 4710 8.607459 ACGCATCTTATAGCATTTTATAGCATC 58.393 33.333 0.00 0.00 0.00 3.91
2236 4711 8.606602 CGCATCTTATAGCATTTTATAGCATCA 58.393 33.333 0.00 0.00 0.00 3.07
2237 4712 9.713740 GCATCTTATAGCATTTTATAGCATCAC 57.286 33.333 0.00 0.00 0.00 3.06
2242 4717 9.737844 TTATAGCATTTTATAGCATCACATCCA 57.262 29.630 0.00 0.00 0.00 3.41
2243 4718 6.964807 AGCATTTTATAGCATCACATCCAA 57.035 33.333 0.00 0.00 0.00 3.53
2244 4719 7.534723 AGCATTTTATAGCATCACATCCAAT 57.465 32.000 0.00 0.00 0.00 3.16
2245 4720 7.375834 AGCATTTTATAGCATCACATCCAATG 58.624 34.615 0.00 0.00 0.00 2.82
2246 4721 6.588756 GCATTTTATAGCATCACATCCAATGG 59.411 38.462 0.00 0.00 33.60 3.16
2247 4722 5.710513 TTTATAGCATCACATCCAATGGC 57.289 39.130 0.00 0.00 33.60 4.40
2248 4723 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
2249 4724 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
2250 4725 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
2251 4726 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
2252 4727 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
2253 4728 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
2254 4729 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
2255 4730 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
2256 4731 6.016024 GCATCACATCCAATGGCTATAAAAGA 60.016 38.462 0.00 0.00 33.60 2.52
2257 4732 7.309621 GCATCACATCCAATGGCTATAAAAGAT 60.310 37.037 0.00 0.00 33.60 2.40
2258 4733 7.514784 TCACATCCAATGGCTATAAAAGATG 57.485 36.000 0.00 8.84 36.73 2.90
2259 4734 7.289310 TCACATCCAATGGCTATAAAAGATGA 58.711 34.615 14.33 1.03 35.13 2.92
2260 4735 7.779326 TCACATCCAATGGCTATAAAAGATGAA 59.221 33.333 14.33 4.30 35.13 2.57
2261 4736 8.582437 CACATCCAATGGCTATAAAAGATGAAT 58.418 33.333 14.33 0.00 35.13 2.57
2262 4737 8.582437 ACATCCAATGGCTATAAAAGATGAATG 58.418 33.333 14.33 0.00 35.13 2.67
2263 4738 8.799367 CATCCAATGGCTATAAAAGATGAATGA 58.201 33.333 0.00 0.00 33.35 2.57
2264 4739 8.400184 TCCAATGGCTATAAAAGATGAATGAG 57.600 34.615 0.00 0.00 0.00 2.90
2265 4740 8.219868 TCCAATGGCTATAAAAGATGAATGAGA 58.780 33.333 0.00 0.00 0.00 3.27
2266 4741 8.295288 CCAATGGCTATAAAAGATGAATGAGAC 58.705 37.037 0.00 0.00 0.00 3.36
2267 4742 7.992754 ATGGCTATAAAAGATGAATGAGACC 57.007 36.000 0.00 0.00 0.00 3.85
2268 4743 6.899089 TGGCTATAAAAGATGAATGAGACCA 58.101 36.000 0.00 0.00 0.00 4.02
2269 4744 7.345691 TGGCTATAAAAGATGAATGAGACCAA 58.654 34.615 0.00 0.00 0.00 3.67
2270 4745 7.833682 TGGCTATAAAAGATGAATGAGACCAAA 59.166 33.333 0.00 0.00 0.00 3.28
2271 4746 8.854117 GGCTATAAAAGATGAATGAGACCAAAT 58.146 33.333 0.00 0.00 0.00 2.32
2306 4781 7.897575 CTAGATGAGTTCTAGCAAAACTGTT 57.102 36.000 0.32 0.00 45.63 3.16
2307 4782 8.316640 CTAGATGAGTTCTAGCAAAACTGTTT 57.683 34.615 0.00 0.00 45.63 2.83
2308 4783 9.424319 CTAGATGAGTTCTAGCAAAACTGTTTA 57.576 33.333 6.16 0.00 45.63 2.01
2309 4784 8.677148 AGATGAGTTCTAGCAAAACTGTTTAA 57.323 30.769 6.16 0.00 37.10 1.52
2310 4785 8.778358 AGATGAGTTCTAGCAAAACTGTTTAAG 58.222 33.333 6.16 3.94 37.10 1.85
2311 4786 8.677148 ATGAGTTCTAGCAAAACTGTTTAAGA 57.323 30.769 6.16 5.10 37.10 2.10
2312 4787 8.500753 TGAGTTCTAGCAAAACTGTTTAAGAA 57.499 30.769 6.16 10.21 37.10 2.52
2313 4788 8.952278 TGAGTTCTAGCAAAACTGTTTAAGAAA 58.048 29.630 6.16 0.00 37.10 2.52
2314 4789 9.783256 GAGTTCTAGCAAAACTGTTTAAGAAAA 57.217 29.630 6.16 0.00 37.10 2.29
2315 4790 9.569167 AGTTCTAGCAAAACTGTTTAAGAAAAC 57.431 29.630 6.16 7.49 44.40 2.43
2316 4791 8.804743 GTTCTAGCAAAACTGTTTAAGAAAACC 58.195 33.333 6.16 0.51 43.66 3.27
2317 4792 8.057536 TCTAGCAAAACTGTTTAAGAAAACCA 57.942 30.769 6.16 0.00 43.66 3.67
2318 4793 8.524487 TCTAGCAAAACTGTTTAAGAAAACCAA 58.476 29.630 6.16 0.00 43.66 3.67
2319 4794 7.971183 AGCAAAACTGTTTAAGAAAACCAAA 57.029 28.000 6.16 0.00 43.66 3.28
2320 4795 8.560355 AGCAAAACTGTTTAAGAAAACCAAAT 57.440 26.923 6.16 0.00 43.66 2.32
2321 4796 9.660180 AGCAAAACTGTTTAAGAAAACCAAATA 57.340 25.926 6.16 0.00 43.66 1.40
2347 4822 6.403866 TGAGCATGAACTTGGTTAAACAAT 57.596 33.333 6.36 0.00 0.00 2.71
2351 4826 5.119125 GCATGAACTTGGTTAAACAATGCTC 59.881 40.000 17.49 10.51 31.89 4.26
2566 5043 1.539496 CGACCTCTGACCGGTTTCAAA 60.539 52.381 9.42 0.00 34.19 2.69
2608 5085 6.682423 TGTACAGAGCCAATCATACATTTG 57.318 37.500 0.00 0.00 30.75 2.32
2774 5252 1.007734 GCTGAACGACGTGACCTCA 60.008 57.895 0.00 0.00 0.00 3.86
2911 5390 2.107950 GTCCGTGGACAATGGATTGA 57.892 50.000 14.10 0.00 45.98 2.57
2942 5421 5.760253 GTCATCCGACCATAGTCATCAAATT 59.240 40.000 0.00 0.00 43.73 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 1.153745 CAGGACCAGTACGAGCTGC 60.154 63.158 0.00 0.00 35.28 5.25
108 109 4.385199 CCCAATAGAAGTTATGCAGGACCA 60.385 45.833 0.00 0.00 0.00 4.02
110 111 3.565902 GCCCAATAGAAGTTATGCAGGAC 59.434 47.826 0.00 0.00 0.00 3.85
112 113 3.567164 CAGCCCAATAGAAGTTATGCAGG 59.433 47.826 0.00 0.00 0.00 4.85
154 155 1.273886 ACGTCTTCTCCTCTTGCCTTC 59.726 52.381 0.00 0.00 0.00 3.46
220 221 5.974751 TGGTTTTTCTTACGCAAAACATCTC 59.025 36.000 8.89 0.00 42.35 2.75
225 226 6.397831 AAGTTGGTTTTTCTTACGCAAAAC 57.602 33.333 0.00 0.00 40.64 2.43
228 229 9.968870 AATAATAAGTTGGTTTTTCTTACGCAA 57.031 25.926 0.00 0.00 0.00 4.85
298 300 9.436957 GAACTGTAAATAGAAAGGAGTGATGAA 57.563 33.333 0.00 0.00 0.00 2.57
299 301 8.816894 AGAACTGTAAATAGAAAGGAGTGATGA 58.183 33.333 0.00 0.00 0.00 2.92
337 339 3.501950 GTGATTTCACATTTCGAAGGCC 58.498 45.455 5.84 0.00 45.75 5.19
374 376 5.581126 AGTTGAAAGTGACATTTGCAAGA 57.419 34.783 4.40 0.00 0.00 3.02
383 385 4.191544 CACCAGAGAAGTTGAAAGTGACA 58.808 43.478 0.00 0.00 0.00 3.58
394 396 3.261897 CCACTTATCACCACCAGAGAAGT 59.738 47.826 0.00 0.00 45.41 3.01
400 402 1.453155 GTGCCACTTATCACCACCAG 58.547 55.000 0.00 0.00 0.00 4.00
420 422 4.093408 CGATAAGCGATATCCCCAACATTG 59.907 45.833 0.00 0.00 44.57 2.82
421 423 4.253685 CGATAAGCGATATCCCCAACATT 58.746 43.478 0.00 0.00 44.57 2.71
422 424 3.369471 CCGATAAGCGATATCCCCAACAT 60.369 47.826 0.00 0.00 44.57 2.71
423 425 2.028476 CCGATAAGCGATATCCCCAACA 60.028 50.000 0.00 0.00 44.57 3.33
424 426 2.618053 CCGATAAGCGATATCCCCAAC 58.382 52.381 0.00 0.00 44.57 3.77
425 427 1.553248 CCCGATAAGCGATATCCCCAA 59.447 52.381 0.00 0.00 44.57 4.12
426 428 1.191535 CCCGATAAGCGATATCCCCA 58.808 55.000 0.00 0.00 44.57 4.96
427 429 1.481871 TCCCGATAAGCGATATCCCC 58.518 55.000 0.00 0.00 44.57 4.81
428 430 2.496470 AGTTCCCGATAAGCGATATCCC 59.504 50.000 0.00 0.00 44.57 3.85
429 431 3.870633 AGTTCCCGATAAGCGATATCC 57.129 47.619 0.00 0.00 44.57 2.59
430 432 5.681982 CGATAAGTTCCCGATAAGCGATATC 59.318 44.000 0.00 0.00 44.57 1.63
431 433 5.356190 TCGATAAGTTCCCGATAAGCGATAT 59.644 40.000 0.00 0.00 44.57 1.63
432 434 4.696877 TCGATAAGTTCCCGATAAGCGATA 59.303 41.667 0.00 0.00 44.57 2.92
433 435 3.504906 TCGATAAGTTCCCGATAAGCGAT 59.495 43.478 0.00 0.00 44.57 4.58
434 436 2.880268 TCGATAAGTTCCCGATAAGCGA 59.120 45.455 0.00 0.00 44.57 4.93
435 437 3.278367 TCGATAAGTTCCCGATAAGCG 57.722 47.619 0.00 0.00 40.47 4.68
436 438 3.852536 CGATCGATAAGTTCCCGATAAGC 59.147 47.826 10.26 1.59 42.26 3.09
437 439 5.087397 GTCGATCGATAAGTTCCCGATAAG 58.913 45.833 22.50 9.10 42.26 1.73
438 440 4.083110 GGTCGATCGATAAGTTCCCGATAA 60.083 45.833 22.50 0.00 42.26 1.75
439 441 3.438087 GGTCGATCGATAAGTTCCCGATA 59.562 47.826 22.50 0.00 42.26 2.92
440 442 2.228343 GGTCGATCGATAAGTTCCCGAT 59.772 50.000 22.50 10.80 44.49 4.18
441 443 1.605710 GGTCGATCGATAAGTTCCCGA 59.394 52.381 22.50 0.00 36.72 5.14
442 444 1.335689 GGGTCGATCGATAAGTTCCCG 60.336 57.143 22.50 0.00 0.00 5.14
443 445 1.684983 TGGGTCGATCGATAAGTTCCC 59.315 52.381 24.96 24.96 34.77 3.97
444 446 3.005472 TCATGGGTCGATCGATAAGTTCC 59.995 47.826 22.50 15.85 0.00 3.62
445 447 4.238761 TCATGGGTCGATCGATAAGTTC 57.761 45.455 22.50 6.85 0.00 3.01
446 448 4.873746 ATCATGGGTCGATCGATAAGTT 57.126 40.909 22.50 2.95 0.00 2.66
447 449 5.105716 CCTTATCATGGGTCGATCGATAAGT 60.106 44.000 22.50 5.67 41.73 2.24
448 450 5.344066 CCTTATCATGGGTCGATCGATAAG 58.656 45.833 22.50 20.13 42.41 1.73
449 451 4.159693 CCCTTATCATGGGTCGATCGATAA 59.840 45.833 22.50 12.36 39.82 1.75
450 452 3.699538 CCCTTATCATGGGTCGATCGATA 59.300 47.826 22.50 11.38 39.82 2.92
451 453 2.497675 CCCTTATCATGGGTCGATCGAT 59.502 50.000 22.50 5.68 39.82 3.59
452 454 1.893137 CCCTTATCATGGGTCGATCGA 59.107 52.381 15.15 15.15 39.82 3.59
453 455 1.066858 CCCCTTATCATGGGTCGATCG 60.067 57.143 9.36 9.36 43.09 3.69
454 456 2.770164 CCCCTTATCATGGGTCGATC 57.230 55.000 0.00 0.00 43.09 3.69
461 463 3.081804 GCCGATTTACCCCTTATCATGG 58.918 50.000 0.00 0.00 0.00 3.66
462 464 3.081804 GGCCGATTTACCCCTTATCATG 58.918 50.000 0.00 0.00 0.00 3.07
463 465 2.714250 TGGCCGATTTACCCCTTATCAT 59.286 45.455 0.00 0.00 0.00 2.45
464 466 2.128535 TGGCCGATTTACCCCTTATCA 58.871 47.619 0.00 0.00 0.00 2.15
465 467 2.943036 TGGCCGATTTACCCCTTATC 57.057 50.000 0.00 0.00 0.00 1.75
466 468 3.895704 ATTGGCCGATTTACCCCTTAT 57.104 42.857 0.00 0.00 0.00 1.73
467 469 3.673543 AATTGGCCGATTTACCCCTTA 57.326 42.857 12.89 0.00 0.00 2.69
468 470 2.543037 AATTGGCCGATTTACCCCTT 57.457 45.000 12.89 0.00 0.00 3.95
469 471 2.543037 AAATTGGCCGATTTACCCCT 57.457 45.000 26.72 4.37 0.00 4.79
470 472 4.627058 CAATAAATTGGCCGATTTACCCC 58.373 43.478 31.89 0.00 35.10 4.95
493 495 2.477863 GGCGATAAATTGGCCGATATGC 60.478 50.000 5.71 6.13 37.06 3.14
494 496 3.405170 GGCGATAAATTGGCCGATATG 57.595 47.619 5.71 0.00 37.06 1.78
501 503 3.405170 CCGATATGGCGATAAATTGGC 57.595 47.619 0.00 0.00 37.27 4.52
513 515 5.402568 CGATAAGATTTATCGGCCGATATGG 59.597 44.000 40.30 25.11 42.01 2.74
514 516 6.439712 CGATAAGATTTATCGGCCGATATG 57.560 41.667 40.30 20.69 42.01 1.78
523 525 2.921754 GTCCGGCCGATAAGATTTATCG 59.078 50.000 30.73 19.12 44.42 2.92
524 526 3.921677 TGTCCGGCCGATAAGATTTATC 58.078 45.455 30.73 3.17 0.00 1.75
525 527 4.345859 TTGTCCGGCCGATAAGATTTAT 57.654 40.909 30.73 0.00 0.00 1.40
526 528 3.823281 TTGTCCGGCCGATAAGATTTA 57.177 42.857 30.73 3.23 0.00 1.40
527 529 2.702592 TTGTCCGGCCGATAAGATTT 57.297 45.000 30.73 0.00 0.00 2.17
528 530 2.561569 CTTTGTCCGGCCGATAAGATT 58.438 47.619 30.73 0.00 0.00 2.40
529 531 1.202651 CCTTTGTCCGGCCGATAAGAT 60.203 52.381 30.73 0.00 0.00 2.40
530 532 0.177141 CCTTTGTCCGGCCGATAAGA 59.823 55.000 30.73 13.00 0.00 2.10
531 533 0.107848 ACCTTTGTCCGGCCGATAAG 60.108 55.000 30.73 21.54 0.00 1.73
532 534 1.193323 TACCTTTGTCCGGCCGATAA 58.807 50.000 30.73 15.69 0.00 1.75
533 535 1.137479 CTTACCTTTGTCCGGCCGATA 59.863 52.381 30.73 12.10 0.00 2.92
534 536 0.107848 CTTACCTTTGTCCGGCCGAT 60.108 55.000 30.73 3.52 0.00 4.18
535 537 1.294138 CTTACCTTTGTCCGGCCGA 59.706 57.895 30.73 10.38 0.00 5.54
536 538 1.004200 ACTTACCTTTGTCCGGCCG 60.004 57.895 21.04 21.04 0.00 6.13
537 539 0.035739 TCACTTACCTTTGTCCGGCC 59.964 55.000 0.00 0.00 0.00 6.13
538 540 2.109425 ATCACTTACCTTTGTCCGGC 57.891 50.000 0.00 0.00 0.00 6.13
539 541 5.006358 CGATTTATCACTTACCTTTGTCCGG 59.994 44.000 0.00 0.00 0.00 5.14
540 542 5.006358 CCGATTTATCACTTACCTTTGTCCG 59.994 44.000 0.00 0.00 0.00 4.79
541 543 5.220796 GCCGATTTATCACTTACCTTTGTCC 60.221 44.000 0.00 0.00 0.00 4.02
542 544 5.585047 AGCCGATTTATCACTTACCTTTGTC 59.415 40.000 0.00 0.00 0.00 3.18
543 545 5.354234 CAGCCGATTTATCACTTACCTTTGT 59.646 40.000 0.00 0.00 0.00 2.83
544 546 5.584649 TCAGCCGATTTATCACTTACCTTTG 59.415 40.000 0.00 0.00 0.00 2.77
545 547 5.741011 TCAGCCGATTTATCACTTACCTTT 58.259 37.500 0.00 0.00 0.00 3.11
546 548 5.353394 TCAGCCGATTTATCACTTACCTT 57.647 39.130 0.00 0.00 0.00 3.50
547 549 5.552870 ATCAGCCGATTTATCACTTACCT 57.447 39.130 0.00 0.00 0.00 3.08
559 561 6.094048 CCAATATTCCGATAAATCAGCCGATT 59.906 38.462 0.00 0.00 43.94 3.34
560 562 5.586243 CCAATATTCCGATAAATCAGCCGAT 59.414 40.000 0.00 0.00 0.00 4.18
561 563 4.935205 CCAATATTCCGATAAATCAGCCGA 59.065 41.667 0.00 0.00 0.00 5.54
562 564 4.935205 TCCAATATTCCGATAAATCAGCCG 59.065 41.667 0.00 0.00 0.00 5.52
563 565 6.655003 TCTTCCAATATTCCGATAAATCAGCC 59.345 38.462 0.00 0.00 0.00 4.85
564 566 7.672983 TCTTCCAATATTCCGATAAATCAGC 57.327 36.000 0.00 0.00 0.00 4.26
572 574 9.442047 GTTCAAGATATCTTCCAATATTCCGAT 57.558 33.333 15.24 0.00 33.11 4.18
573 575 8.428852 TGTTCAAGATATCTTCCAATATTCCGA 58.571 33.333 15.24 3.18 33.11 4.55
574 576 8.607441 TGTTCAAGATATCTTCCAATATTCCG 57.393 34.615 15.24 0.82 33.11 4.30
575 577 9.566432 ACTGTTCAAGATATCTTCCAATATTCC 57.434 33.333 15.24 0.95 33.11 3.01
580 582 9.388506 CACTTACTGTTCAAGATATCTTCCAAT 57.611 33.333 15.24 5.45 33.11 3.16
581 583 7.824289 CCACTTACTGTTCAAGATATCTTCCAA 59.176 37.037 15.24 8.41 33.11 3.53
582 584 7.331026 CCACTTACTGTTCAAGATATCTTCCA 58.669 38.462 15.24 10.96 33.11 3.53
583 585 6.258947 GCCACTTACTGTTCAAGATATCTTCC 59.741 42.308 15.24 7.10 33.11 3.46
584 586 6.818644 TGCCACTTACTGTTCAAGATATCTTC 59.181 38.462 15.24 5.43 33.11 2.87
585 587 6.595716 GTGCCACTTACTGTTCAAGATATCTT 59.404 38.462 12.37 12.37 36.45 2.40
586 588 6.109359 GTGCCACTTACTGTTCAAGATATCT 58.891 40.000 0.00 0.00 0.00 1.98
587 589 5.874810 TGTGCCACTTACTGTTCAAGATATC 59.125 40.000 0.00 0.00 0.00 1.63
588 590 5.643777 GTGTGCCACTTACTGTTCAAGATAT 59.356 40.000 0.00 0.00 0.00 1.63
589 591 4.994852 GTGTGCCACTTACTGTTCAAGATA 59.005 41.667 0.00 0.00 0.00 1.98
590 592 3.815401 GTGTGCCACTTACTGTTCAAGAT 59.185 43.478 0.00 0.00 0.00 2.40
591 593 3.118408 AGTGTGCCACTTACTGTTCAAGA 60.118 43.478 0.00 0.00 42.59 3.02
592 594 3.002656 CAGTGTGCCACTTACTGTTCAAG 59.997 47.826 7.06 0.00 42.59 3.02
593 595 2.942376 CAGTGTGCCACTTACTGTTCAA 59.058 45.455 7.06 0.00 42.59 2.69
594 596 2.560504 CAGTGTGCCACTTACTGTTCA 58.439 47.619 7.06 0.00 42.59 3.18
595 597 1.873591 CCAGTGTGCCACTTACTGTTC 59.126 52.381 12.64 0.00 42.59 3.18
596 598 1.211949 ACCAGTGTGCCACTTACTGTT 59.788 47.619 12.64 0.00 42.59 3.16
597 599 0.837272 ACCAGTGTGCCACTTACTGT 59.163 50.000 12.64 1.33 42.59 3.55
598 600 1.229428 CACCAGTGTGCCACTTACTG 58.771 55.000 8.04 8.04 42.59 2.74
599 601 3.706055 CACCAGTGTGCCACTTACT 57.294 52.632 5.24 0.00 42.59 2.24
657 660 4.469945 TGCTAAATCTTAGTGGCTGGTAGT 59.530 41.667 0.00 0.00 0.00 2.73
669 1207 6.108687 CCACACAGAGACATGCTAAATCTTA 58.891 40.000 0.00 0.00 0.00 2.10
682 1220 3.963428 ATTAGGTCACCACACAGAGAC 57.037 47.619 0.00 0.00 0.00 3.36
686 1224 4.020573 TGGACTTATTAGGTCACCACACAG 60.021 45.833 0.00 0.00 35.61 3.66
691 1229 6.381498 TCATTTGGACTTATTAGGTCACCA 57.619 37.500 0.00 0.00 35.61 4.17
692 1230 8.974060 TTATCATTTGGACTTATTAGGTCACC 57.026 34.615 8.07 0.00 35.61 4.02
694 1232 9.613428 CACTTATCATTTGGACTTATTAGGTCA 57.387 33.333 8.07 0.00 35.61 4.02
695 1233 9.614792 ACACTTATCATTTGGACTTATTAGGTC 57.385 33.333 0.00 0.00 0.00 3.85
696 1234 9.614792 GACACTTATCATTTGGACTTATTAGGT 57.385 33.333 0.00 0.00 0.00 3.08
697 1235 9.613428 TGACACTTATCATTTGGACTTATTAGG 57.387 33.333 0.00 0.00 0.00 2.69
699 1237 9.952030 TGTGACACTTATCATTTGGACTTATTA 57.048 29.630 7.20 0.00 0.00 0.98
700 1238 8.730680 GTGTGACACTTATCATTTGGACTTATT 58.269 33.333 8.76 0.00 0.00 1.40
705 1243 4.451096 ACGTGTGACACTTATCATTTGGAC 59.549 41.667 14.42 0.00 31.34 4.02
728 1266 1.299850 CGGAGTGCTTCGTGACACA 60.300 57.895 6.37 0.00 39.30 3.72
746 1284 3.851098 AGCTCTAAACAACGTCAGATCC 58.149 45.455 0.00 0.00 0.00 3.36
749 1287 5.839621 ACTTTAGCTCTAAACAACGTCAGA 58.160 37.500 0.00 0.00 32.26 3.27
755 1293 8.012241 CAGATGACAACTTTAGCTCTAAACAAC 58.988 37.037 0.00 0.00 32.26 3.32
758 1296 7.891183 TCAGATGACAACTTTAGCTCTAAAC 57.109 36.000 0.00 0.00 32.26 2.01
763 1301 7.426929 TCTTTTCAGATGACAACTTTAGCTC 57.573 36.000 0.00 0.00 0.00 4.09
820 1777 5.483213 CGCATGACAACTTTTTGTTCAAAG 58.517 37.500 0.00 0.00 46.43 2.77
837 1794 3.487536 CAATTTTAGTTGTCGCGCATGA 58.512 40.909 8.75 0.00 0.00 3.07
842 1799 2.323939 TGGCAATTTTAGTTGTCGCG 57.676 45.000 0.00 0.00 36.51 5.87
843 1800 3.119495 AGGATGGCAATTTTAGTTGTCGC 60.119 43.478 0.00 0.00 36.51 5.19
855 1812 4.481368 TTAGTAACACGAGGATGGCAAT 57.519 40.909 0.00 0.00 0.00 3.56
898 1927 4.340666 TGTGGCACAAACATATGACAACTT 59.659 37.500 19.74 0.00 44.16 2.66
900 1929 4.235939 TGTGGCACAAACATATGACAAC 57.764 40.909 19.74 0.00 44.16 3.32
931 1960 6.665992 TTAGGCTGATGGGTACACTATAAG 57.334 41.667 0.00 0.00 0.00 1.73
933 1962 5.306160 GGTTTAGGCTGATGGGTACACTATA 59.694 44.000 0.00 0.00 0.00 1.31
960 2104 6.087522 CGGTAGTGCTATTTATGCTACTCTC 58.912 44.000 0.00 0.00 34.25 3.20
965 2109 4.304110 GTGCGGTAGTGCTATTTATGCTA 58.696 43.478 0.00 0.00 35.36 3.49
981 2125 2.283966 AGCTGAGGTAGGTGCGGT 60.284 61.111 0.00 0.00 35.38 5.68
1009 2153 3.430517 TCACTCGTATGGAGGGGCTGA 62.431 57.143 0.00 0.00 46.75 4.26
1245 3695 4.840005 GCTAGGACCGGTGGCTGC 62.840 72.222 14.63 7.75 0.00 5.25
1257 3707 3.692406 GGATACGGCGGGGCTAGG 61.692 72.222 13.24 0.00 0.00 3.02
1262 3712 3.612681 ACGATGGATACGGCGGGG 61.613 66.667 13.24 0.00 39.64 5.73
1293 3743 3.129287 TCGTGACCGAATTAGGAGTAACC 59.871 47.826 12.01 0.00 40.86 2.85
1311 3761 2.668212 ACCAACACCGGCATCGTG 60.668 61.111 0.00 0.00 33.95 4.35
1659 4113 0.179045 GCGGGCAGTGATGGTAGAAT 60.179 55.000 0.00 0.00 0.00 2.40
1679 4133 4.755266 ACATCTCCCGTTTAAGCATAGT 57.245 40.909 0.00 0.00 0.00 2.12
1689 4143 2.779755 TGCATGTAACATCTCCCGTT 57.220 45.000 0.00 0.00 0.00 4.44
1691 4145 2.945008 ACAATGCATGTAACATCTCCCG 59.055 45.455 0.00 0.00 41.63 5.14
1700 4154 6.676237 ATACATCGTTCACAATGCATGTAA 57.324 33.333 0.00 0.00 41.46 2.41
1702 4156 6.293571 CCATATACATCGTTCACAATGCATGT 60.294 38.462 0.00 0.00 45.34 3.21
1706 4162 5.443261 CACCATATACATCGTTCACAATGC 58.557 41.667 0.00 0.00 0.00 3.56
1748 4209 6.770746 AGTACTACCACAAGAATCACGTAT 57.229 37.500 0.00 0.00 0.00 3.06
1803 4264 4.833478 ATAAGAGAACACATGCACTCCT 57.167 40.909 0.00 0.00 0.00 3.69
1844 4306 6.859090 CAAATATGAATTTGTACATGCTGCG 58.141 36.000 0.00 0.00 44.62 5.18
1870 4332 6.990798 TGAATTTATGACTGCCATTTGAACA 58.009 32.000 0.00 0.00 36.71 3.18
1900 4362 9.956720 GCAATCAACTGCAGTAAAGATAAATAT 57.043 29.630 22.01 6.06 42.17 1.28
1902 4364 6.968904 CGCAATCAACTGCAGTAAAGATAAAT 59.031 34.615 22.01 6.74 42.77 1.40
1903 4365 6.148645 TCGCAATCAACTGCAGTAAAGATAAA 59.851 34.615 22.01 7.74 42.77 1.40
1904 4366 5.641636 TCGCAATCAACTGCAGTAAAGATAA 59.358 36.000 22.01 8.04 42.77 1.75
1933 4395 2.159517 GCGAATGGAGATTTTGCGTCTT 60.160 45.455 0.00 0.00 0.00 3.01
1945 4407 0.103208 AAGCGAGTAGGCGAATGGAG 59.897 55.000 0.00 0.00 38.18 3.86
1947 4409 2.218953 TTAAGCGAGTAGGCGAATGG 57.781 50.000 0.00 0.00 38.18 3.16
2010 4477 0.599558 TGGACGACAACTTACTCCGG 59.400 55.000 0.00 0.00 0.00 5.14
2011 4478 2.649331 ATGGACGACAACTTACTCCG 57.351 50.000 0.00 0.00 0.00 4.63
2021 4488 1.135112 CCGATGACTGAATGGACGACA 60.135 52.381 0.00 0.00 0.00 4.35
2034 4501 1.743958 TCGAAGAGGAAGACCGATGAC 59.256 52.381 0.00 0.00 41.83 3.06
2050 4521 7.770571 GTGAAACACTCCAGTCGAGATCGAA 62.771 48.000 6.49 0.00 43.76 3.71
2055 4526 1.001706 CGTGAAACACTCCAGTCGAGA 60.002 52.381 0.00 0.00 42.21 4.04
2057 4528 0.596600 GCGTGAAACACTCCAGTCGA 60.597 55.000 0.00 0.00 35.74 4.20
2058 4529 0.874175 TGCGTGAAACACTCCAGTCG 60.874 55.000 0.00 0.00 35.74 4.18
2059 4530 1.295792 TTGCGTGAAACACTCCAGTC 58.704 50.000 0.00 0.00 35.74 3.51
2060 4531 1.967319 ATTGCGTGAAACACTCCAGT 58.033 45.000 0.00 0.00 35.74 4.00
2061 4532 2.653890 CAATTGCGTGAAACACTCCAG 58.346 47.619 0.00 0.00 35.74 3.86
2062 4533 1.268999 GCAATTGCGTGAAACACTCCA 60.269 47.619 15.87 0.00 35.74 3.86
2066 4537 0.317436 TCGGCAATTGCGTGAAACAC 60.317 50.000 23.48 6.66 43.26 3.32
2067 4538 0.382158 TTCGGCAATTGCGTGAAACA 59.618 45.000 25.46 10.72 43.26 2.83
2068 4539 0.775861 GTTCGGCAATTGCGTGAAAC 59.224 50.000 27.81 21.49 43.26 2.78
2071 4542 1.573829 GAGGTTCGGCAATTGCGTGA 61.574 55.000 23.48 20.01 43.26 4.35
2072 4543 1.154225 GAGGTTCGGCAATTGCGTG 60.154 57.895 23.48 18.09 43.26 5.34
2079 4550 1.277842 TGATAGCAAGAGGTTCGGCAA 59.722 47.619 0.00 0.00 0.00 4.52
2117 4592 5.652324 TGAGTTCTAGGTACTCCCTTTCTT 58.348 41.667 17.72 0.00 42.73 2.52
2123 4598 6.657541 CATCTAGATGAGTTCTAGGTACTCCC 59.342 46.154 25.78 12.05 44.99 4.30
2124 4599 7.455058 TCATCTAGATGAGTTCTAGGTACTCC 58.545 42.308 27.93 8.04 44.99 3.85
2138 4613 9.276791 AGGCCAAATTATATCTCATCTAGATGA 57.723 33.333 29.17 29.17 44.95 2.92
2139 4614 9.545105 GAGGCCAAATTATATCTCATCTAGATG 57.455 37.037 24.32 24.32 44.95 2.90
2140 4615 9.276791 TGAGGCCAAATTATATCTCATCTAGAT 57.723 33.333 5.01 0.00 46.95 1.98
2141 4616 8.670521 TGAGGCCAAATTATATCTCATCTAGA 57.329 34.615 5.01 0.00 39.02 2.43
2142 4617 9.902684 AATGAGGCCAAATTATATCTCATCTAG 57.097 33.333 5.01 0.00 39.96 2.43
2143 4618 9.896645 GAATGAGGCCAAATTATATCTCATCTA 57.103 33.333 5.01 0.00 39.96 1.98
2144 4619 8.388589 TGAATGAGGCCAAATTATATCTCATCT 58.611 33.333 5.01 0.00 39.96 2.90
2145 4620 8.571461 TGAATGAGGCCAAATTATATCTCATC 57.429 34.615 5.01 0.00 39.96 2.92
2146 4621 9.543231 AATGAATGAGGCCAAATTATATCTCAT 57.457 29.630 5.01 0.00 41.83 2.90
2147 4622 8.945195 AATGAATGAGGCCAAATTATATCTCA 57.055 30.769 5.01 0.00 36.00 3.27
2148 4623 9.635520 CAAATGAATGAGGCCAAATTATATCTC 57.364 33.333 5.01 0.00 0.00 2.75
2149 4624 9.370930 TCAAATGAATGAGGCCAAATTATATCT 57.629 29.630 5.01 0.00 0.00 1.98
2150 4625 9.985730 TTCAAATGAATGAGGCCAAATTATATC 57.014 29.630 5.01 0.00 0.00 1.63
2153 4628 8.949177 GTTTTCAAATGAATGAGGCCAAATTAT 58.051 29.630 5.01 0.00 33.54 1.28
2154 4629 7.935755 TGTTTTCAAATGAATGAGGCCAAATTA 59.064 29.630 5.01 0.00 33.54 1.40
2161 4636 6.479660 TGTTCTTGTTTTCAAATGAATGAGGC 59.520 34.615 0.00 0.00 39.47 4.70
2175 4650 8.106247 ACGTGGATGTTATATGTTCTTGTTTT 57.894 30.769 0.00 0.00 0.00 2.43
2177 4652 6.876789 TGACGTGGATGTTATATGTTCTTGTT 59.123 34.615 0.00 0.00 0.00 2.83
2180 4655 5.523916 GCTGACGTGGATGTTATATGTTCTT 59.476 40.000 0.00 0.00 0.00 2.52
2181 4656 5.050490 GCTGACGTGGATGTTATATGTTCT 58.950 41.667 0.00 0.00 0.00 3.01
2182 4657 4.808895 TGCTGACGTGGATGTTATATGTTC 59.191 41.667 0.00 0.00 0.00 3.18
2183 4658 4.570772 GTGCTGACGTGGATGTTATATGTT 59.429 41.667 0.00 0.00 0.00 2.71
2184 4659 4.119862 GTGCTGACGTGGATGTTATATGT 58.880 43.478 0.00 0.00 0.00 2.29
2185 4660 4.025730 GTGTGCTGACGTGGATGTTATATG 60.026 45.833 0.00 0.00 0.00 1.78
2186 4661 4.119862 GTGTGCTGACGTGGATGTTATAT 58.880 43.478 0.00 0.00 0.00 0.86
2187 4662 3.056465 TGTGTGCTGACGTGGATGTTATA 60.056 43.478 0.00 0.00 0.00 0.98
2189 4664 1.069358 TGTGTGCTGACGTGGATGTTA 59.931 47.619 0.00 0.00 0.00 2.41
2191 4666 0.880278 GTGTGTGCTGACGTGGATGT 60.880 55.000 0.00 0.00 0.00 3.06
2192 4667 1.862123 GTGTGTGCTGACGTGGATG 59.138 57.895 0.00 0.00 0.00 3.51
2196 4671 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
2197 4672 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
2199 4674 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
2200 4675 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
2201 4676 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
2202 4677 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
2203 4678 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
2204 4679 4.801147 AATGCTATAAGATGCGTGTGTG 57.199 40.909 0.00 0.00 0.00 3.82
2205 4680 5.818136 AAAATGCTATAAGATGCGTGTGT 57.182 34.783 0.00 0.00 0.00 3.72
2206 4681 7.689812 GCTATAAAATGCTATAAGATGCGTGTG 59.310 37.037 0.00 0.00 0.00 3.82
2207 4682 7.387673 TGCTATAAAATGCTATAAGATGCGTGT 59.612 33.333 0.00 0.00 0.00 4.49
2208 4683 7.742151 TGCTATAAAATGCTATAAGATGCGTG 58.258 34.615 0.00 0.00 0.00 5.34
2209 4684 7.905604 TGCTATAAAATGCTATAAGATGCGT 57.094 32.000 0.00 0.00 0.00 5.24
2210 4685 8.606602 TGATGCTATAAAATGCTATAAGATGCG 58.393 33.333 0.00 0.00 0.00 4.73
2211 4686 9.713740 GTGATGCTATAAAATGCTATAAGATGC 57.286 33.333 0.00 0.00 0.00 3.91
2216 4691 9.737844 TGGATGTGATGCTATAAAATGCTATAA 57.262 29.630 0.00 0.00 0.00 0.98
2217 4692 9.737844 TTGGATGTGATGCTATAAAATGCTATA 57.262 29.630 0.00 0.00 0.00 1.31
2218 4693 8.640063 TTGGATGTGATGCTATAAAATGCTAT 57.360 30.769 0.00 0.00 0.00 2.97
2219 4694 8.517056 CATTGGATGTGATGCTATAAAATGCTA 58.483 33.333 0.00 0.00 0.00 3.49
2220 4695 6.964807 TTGGATGTGATGCTATAAAATGCT 57.035 33.333 0.00 0.00 0.00 3.79
2221 4696 6.588756 CCATTGGATGTGATGCTATAAAATGC 59.411 38.462 0.00 0.00 0.00 3.56
2222 4697 6.588756 GCCATTGGATGTGATGCTATAAAATG 59.411 38.462 6.95 0.00 0.00 2.32
2223 4698 6.495872 AGCCATTGGATGTGATGCTATAAAAT 59.504 34.615 6.95 0.00 0.00 1.82
2224 4699 5.834742 AGCCATTGGATGTGATGCTATAAAA 59.165 36.000 6.95 0.00 0.00 1.52
2225 4700 5.387788 AGCCATTGGATGTGATGCTATAAA 58.612 37.500 6.95 0.00 0.00 1.40
2226 4701 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
2227 4702 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
2228 4703 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
2229 4704 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
2230 4705 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
2231 4706 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
2232 4707 7.514784 TCTTTTATAGCCATTGGATGTGATG 57.485 36.000 6.95 0.00 0.00 3.07
2233 4708 7.946219 TCATCTTTTATAGCCATTGGATGTGAT 59.054 33.333 6.95 0.00 33.39 3.06
2234 4709 7.289310 TCATCTTTTATAGCCATTGGATGTGA 58.711 34.615 6.95 0.00 33.39 3.58
2235 4710 7.514784 TCATCTTTTATAGCCATTGGATGTG 57.485 36.000 6.95 0.00 33.39 3.21
2236 4711 8.582437 CATTCATCTTTTATAGCCATTGGATGT 58.418 33.333 6.95 0.10 33.39 3.06
2237 4712 8.799367 TCATTCATCTTTTATAGCCATTGGATG 58.201 33.333 6.95 0.00 0.00 3.51
2238 4713 8.945195 TCATTCATCTTTTATAGCCATTGGAT 57.055 30.769 6.95 1.78 0.00 3.41
2239 4714 8.219868 TCTCATTCATCTTTTATAGCCATTGGA 58.780 33.333 6.95 0.00 0.00 3.53
2240 4715 8.295288 GTCTCATTCATCTTTTATAGCCATTGG 58.705 37.037 0.00 0.00 0.00 3.16
2241 4716 8.295288 GGTCTCATTCATCTTTTATAGCCATTG 58.705 37.037 0.00 0.00 0.00 2.82
2242 4717 8.000709 TGGTCTCATTCATCTTTTATAGCCATT 58.999 33.333 0.00 0.00 0.00 3.16
2243 4718 7.520798 TGGTCTCATTCATCTTTTATAGCCAT 58.479 34.615 0.00 0.00 0.00 4.40
2244 4719 6.899089 TGGTCTCATTCATCTTTTATAGCCA 58.101 36.000 0.00 0.00 0.00 4.75
2245 4720 7.807977 TTGGTCTCATTCATCTTTTATAGCC 57.192 36.000 0.00 0.00 0.00 3.93
2283 4758 9.772973 TTAAACAGTTTTGCTAGAACTCATCTA 57.227 29.630 3.25 0.00 39.71 1.98
2284 4759 8.677148 TTAAACAGTTTTGCTAGAACTCATCT 57.323 30.769 3.25 0.00 42.48 2.90
2285 4760 8.774586 TCTTAAACAGTTTTGCTAGAACTCATC 58.225 33.333 3.25 0.00 35.26 2.92
2286 4761 8.677148 TCTTAAACAGTTTTGCTAGAACTCAT 57.323 30.769 3.25 0.00 35.26 2.90
2287 4762 8.500753 TTCTTAAACAGTTTTGCTAGAACTCA 57.499 30.769 3.25 0.00 35.26 3.41
2288 4763 9.783256 TTTTCTTAAACAGTTTTGCTAGAACTC 57.217 29.630 3.25 0.00 35.26 3.01
2289 4764 9.569167 GTTTTCTTAAACAGTTTTGCTAGAACT 57.431 29.630 3.25 0.00 42.56 3.01
2290 4765 8.804743 GGTTTTCTTAAACAGTTTTGCTAGAAC 58.195 33.333 3.25 3.69 44.37 3.01
2291 4766 8.524487 TGGTTTTCTTAAACAGTTTTGCTAGAA 58.476 29.630 3.25 6.24 44.37 2.10
2292 4767 8.057536 TGGTTTTCTTAAACAGTTTTGCTAGA 57.942 30.769 3.25 0.50 44.37 2.43
2293 4768 8.696410 TTGGTTTTCTTAAACAGTTTTGCTAG 57.304 30.769 3.25 0.00 44.37 3.42
2294 4769 9.660180 ATTTGGTTTTCTTAAACAGTTTTGCTA 57.340 25.926 3.25 0.00 44.37 3.49
2295 4770 7.971183 TTTGGTTTTCTTAAACAGTTTTGCT 57.029 28.000 3.25 0.00 44.37 3.91
2303 4778 9.823647 TGCTCAAATATTTGGTTTTCTTAAACA 57.176 25.926 24.40 4.51 44.37 2.83
2308 4783 8.992073 GTTCATGCTCAAATATTTGGTTTTCTT 58.008 29.630 24.40 7.94 38.66 2.52
2309 4784 8.370182 AGTTCATGCTCAAATATTTGGTTTTCT 58.630 29.630 24.40 11.94 38.66 2.52
2310 4785 8.538409 AGTTCATGCTCAAATATTTGGTTTTC 57.462 30.769 24.40 11.74 38.66 2.29
2311 4786 8.776470 CAAGTTCATGCTCAAATATTTGGTTTT 58.224 29.630 24.40 8.16 38.66 2.43
2312 4787 7.388500 CCAAGTTCATGCTCAAATATTTGGTTT 59.612 33.333 24.40 7.85 38.66 3.27
2313 4788 6.875195 CCAAGTTCATGCTCAAATATTTGGTT 59.125 34.615 24.40 7.56 38.66 3.67
2314 4789 6.014327 ACCAAGTTCATGCTCAAATATTTGGT 60.014 34.615 24.40 10.35 39.59 3.67
2315 4790 6.400568 ACCAAGTTCATGCTCAAATATTTGG 58.599 36.000 24.40 16.93 38.66 3.28
2316 4791 7.894376 AACCAAGTTCATGCTCAAATATTTG 57.106 32.000 20.13 20.13 39.48 2.32
2317 4792 9.995003 TTTAACCAAGTTCATGCTCAAATATTT 57.005 25.926 0.00 0.00 0.00 1.40
2318 4793 9.423061 GTTTAACCAAGTTCATGCTCAAATATT 57.577 29.630 0.00 0.00 0.00 1.28
2319 4794 8.584157 TGTTTAACCAAGTTCATGCTCAAATAT 58.416 29.630 0.00 0.00 0.00 1.28
2320 4795 7.946207 TGTTTAACCAAGTTCATGCTCAAATA 58.054 30.769 0.00 0.00 0.00 1.40
2321 4796 6.815089 TGTTTAACCAAGTTCATGCTCAAAT 58.185 32.000 0.00 0.00 0.00 2.32
2322 4797 6.214191 TGTTTAACCAAGTTCATGCTCAAA 57.786 33.333 0.00 0.00 0.00 2.69
2323 4798 5.843673 TGTTTAACCAAGTTCATGCTCAA 57.156 34.783 0.00 0.00 0.00 3.02
2324 4799 5.843673 TTGTTTAACCAAGTTCATGCTCA 57.156 34.783 0.00 0.00 0.00 4.26
2325 4800 5.119125 GCATTGTTTAACCAAGTTCATGCTC 59.881 40.000 2.18 0.00 0.00 4.26
2326 4801 4.990426 GCATTGTTTAACCAAGTTCATGCT 59.010 37.500 2.18 0.00 0.00 3.79
2347 4822 0.907486 CACCCAGAGATCCAAGAGCA 59.093 55.000 0.00 0.00 0.00 4.26
2351 4826 1.577736 AGGTCACCCAGAGATCCAAG 58.422 55.000 0.00 0.00 0.00 3.61
2640 5117 1.152819 CCAGTGGGCCATCAGGATG 60.153 63.158 10.70 2.24 36.89 3.51
2721 5199 7.768120 GGATGGAGAATACCAAGATGATATGAC 59.232 40.741 0.00 0.00 43.47 3.06
2774 5252 1.700186 GTCTGGTGGGGAGAAAAGAGT 59.300 52.381 0.00 0.00 0.00 3.24
2817 5296 2.755103 GGAATTGCCCCTTACAGTCTTG 59.245 50.000 0.00 0.00 0.00 3.02
2897 5376 2.358957 CTTCGCTCAATCCATTGTCCA 58.641 47.619 0.00 0.00 38.84 4.02
2925 5404 5.116180 TGTCCGAATTTGATGACTATGGTC 58.884 41.667 1.56 1.56 42.42 4.02
2929 5408 5.532406 CCCATTGTCCGAATTTGATGACTAT 59.468 40.000 0.00 0.00 0.00 2.12
2932 5411 3.734902 GCCCATTGTCCGAATTTGATGAC 60.735 47.826 0.00 0.00 0.00 3.06
2942 5421 2.437651 TCAATCATAGCCCATTGTCCGA 59.562 45.455 0.00 0.00 32.67 4.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.