Multiple sequence alignment - TraesCS7A01G169100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G169100 chr7A 100.000 4365 0 0 1 4365 125712121 125716485 0.000000e+00 8061.0
1 TraesCS7A01G169100 chr7D 94.476 2317 49 27 2083 4363 122844975 122847248 0.000000e+00 3496.0
2 TraesCS7A01G169100 chr7D 87.494 2135 128 68 1 2061 122842837 122844906 0.000000e+00 2335.0
3 TraesCS7A01G169100 chr7B 87.578 3059 153 94 1369 4325 83905303 83902370 0.000000e+00 3334.0
4 TraesCS7A01G169100 chr7B 85.859 1287 59 45 81 1287 83906586 83905343 0.000000e+00 1254.0
5 TraesCS7A01G169100 chr7B 87.500 88 7 1 1851 1938 88840316 88840233 9.990000e-17 99.0
6 TraesCS7A01G169100 chr7B 85.870 92 9 1 1851 1942 6508370 6508457 1.290000e-15 95.3
7 TraesCS7A01G169100 chr5B 86.957 92 8 1 1851 1942 325493409 325493496 2.780000e-17 100.0
8 TraesCS7A01G169100 chr5B 86.316 95 9 1 1851 1945 469466470 469466380 2.780000e-17 100.0
9 TraesCS7A01G169100 chr4B 86.957 92 8 1 1851 1942 649511517 649511604 2.780000e-17 100.0
10 TraesCS7A01G169100 chr3B 86.316 95 9 1 1851 1945 56840364 56840274 2.780000e-17 100.0
11 TraesCS7A01G169100 chr2B 86.957 92 8 1 1851 1942 785018406 785018493 2.780000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G169100 chr7A 125712121 125716485 4364 False 8061.0 8061 100.0000 1 4365 1 chr7A.!!$F1 4364
1 TraesCS7A01G169100 chr7D 122842837 122847248 4411 False 2915.5 3496 90.9850 1 4363 2 chr7D.!!$F1 4362
2 TraesCS7A01G169100 chr7B 83902370 83906586 4216 True 2294.0 3334 86.7185 81 4325 2 chr7B.!!$R2 4244

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 180 0.249031 TCGTCTCGATACGGCTACGA 60.249 55.0 21.17 8.86 44.6 3.43 F
1886 2046 0.251165 ACCATAAACTGCCCGTTGCT 60.251 50.0 0.00 0.00 42.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 2115 0.108520 CCCTGCAATTTCGCAAGCAT 60.109 50.0 0.0 0.0 42.45 3.79 R
3708 3969 0.533032 AGTGGACTAAAGAGGCGAGC 59.467 55.0 0.0 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.428890 TCTTTGGATTTGTTGGTTGCGT 59.571 40.909 0.00 0.00 0.00 5.24
51 52 0.457443 TTTGTTGGTTGCGTGCATCA 59.543 45.000 0.00 0.00 0.00 3.07
56 57 1.368641 TGGTTGCGTGCATCATCTAC 58.631 50.000 0.00 0.00 0.00 2.59
62 63 2.223805 TGCGTGCATCATCTACTGGTAG 60.224 50.000 0.00 1.65 34.56 3.18
63 64 2.223829 GCGTGCATCATCTACTGGTAGT 60.224 50.000 7.52 0.00 34.84 2.73
64 65 3.375642 CGTGCATCATCTACTGGTAGTG 58.624 50.000 7.52 6.04 34.84 2.74
71 72 3.632604 TCATCTACTGGTAGTGCTAGCAC 59.367 47.826 35.56 35.56 46.50 4.40
103 104 8.512138 CGGATATTTTTCTCTTGTAACCACTTT 58.488 33.333 0.00 0.00 0.00 2.66
134 135 5.007234 CCCATATTAATTGACGCTCGAACAA 59.993 40.000 0.00 3.09 0.00 2.83
143 144 3.612423 TGACGCTCGAACAAATGTATCTG 59.388 43.478 0.00 0.00 0.00 2.90
178 180 0.249031 TCGTCTCGATACGGCTACGA 60.249 55.000 21.17 8.86 44.60 3.43
191 193 3.119101 ACGGCTACGAGAATGAATGAAGT 60.119 43.478 0.00 0.00 44.60 3.01
214 242 7.231467 AGTCCCAAAACACACATTTCTACTAT 58.769 34.615 0.00 0.00 0.00 2.12
215 243 8.380099 AGTCCCAAAACACACATTTCTACTATA 58.620 33.333 0.00 0.00 0.00 1.31
244 272 2.588539 CGTCGTTACGTGAACATGAGAG 59.411 50.000 4.24 0.00 44.21 3.20
259 287 1.004440 AGAGTTCGAACCCAGCTGC 60.004 57.895 24.22 5.93 0.00 5.25
295 323 2.611800 TGCTGCCATGACTCCCCT 60.612 61.111 0.00 0.00 0.00 4.79
296 324 2.191641 GCTGCCATGACTCCCCTC 59.808 66.667 0.00 0.00 0.00 4.30
297 325 2.914289 CTGCCATGACTCCCCTCC 59.086 66.667 0.00 0.00 0.00 4.30
298 326 2.692368 TGCCATGACTCCCCTCCC 60.692 66.667 0.00 0.00 0.00 4.30
299 327 3.493303 GCCATGACTCCCCTCCCC 61.493 72.222 0.00 0.00 0.00 4.81
341 369 3.526931 TTGATGACTAGCCAGTACAGC 57.473 47.619 0.00 0.00 34.21 4.40
357 385 2.126850 GCTTCGGGAAACGCTTGC 60.127 61.111 0.00 0.00 43.86 4.01
593 659 1.022451 TCGTGGCGCCCTAATCAAAC 61.022 55.000 26.77 11.87 0.00 2.93
597 663 1.017387 GGCGCCCTAATCAAACTGAG 58.983 55.000 18.11 0.00 0.00 3.35
601 667 2.280628 GCCCTAATCAAACTGAGGACG 58.719 52.381 0.00 0.00 0.00 4.79
607 673 2.249844 TCAAACTGAGGACGGGAAAC 57.750 50.000 0.00 0.00 0.00 2.78
688 765 3.212685 CCAACTCCTACTACTCCTACCG 58.787 54.545 0.00 0.00 0.00 4.02
715 792 3.057596 GCACATACTCTAGCTAGGAGCAG 60.058 52.174 20.58 12.60 45.56 4.24
1151 1233 2.813908 CACCTACCGCAACCTCGC 60.814 66.667 0.00 0.00 0.00 5.03
1208 1297 2.751259 TCGAGAAGTACGTAGCACCAAT 59.249 45.455 0.00 0.00 0.00 3.16
1212 1301 4.017808 AGAAGTACGTAGCACCAATCTCT 58.982 43.478 0.00 0.00 0.00 3.10
1218 1307 3.126831 CGTAGCACCAATCTCTCAATCC 58.873 50.000 0.00 0.00 0.00 3.01
1222 1311 3.390639 AGCACCAATCTCTCAATCCCTAG 59.609 47.826 0.00 0.00 0.00 3.02
1223 1312 3.135530 GCACCAATCTCTCAATCCCTAGT 59.864 47.826 0.00 0.00 0.00 2.57
1224 1313 4.345257 GCACCAATCTCTCAATCCCTAGTA 59.655 45.833 0.00 0.00 0.00 1.82
1225 1314 5.740513 GCACCAATCTCTCAATCCCTAGTAC 60.741 48.000 0.00 0.00 0.00 2.73
1226 1315 4.902448 ACCAATCTCTCAATCCCTAGTACC 59.098 45.833 0.00 0.00 0.00 3.34
1227 1316 5.151454 CCAATCTCTCAATCCCTAGTACCT 58.849 45.833 0.00 0.00 0.00 3.08
1228 1317 5.245075 CCAATCTCTCAATCCCTAGTACCTC 59.755 48.000 0.00 0.00 0.00 3.85
1229 1318 4.456662 TCTCTCAATCCCTAGTACCTCC 57.543 50.000 0.00 0.00 0.00 4.30
1230 1319 3.140519 TCTCTCAATCCCTAGTACCTCCC 59.859 52.174 0.00 0.00 0.00 4.30
1231 1320 3.140143 TCTCAATCCCTAGTACCTCCCT 58.860 50.000 0.00 0.00 0.00 4.20
1232 1321 3.140519 TCTCAATCCCTAGTACCTCCCTC 59.859 52.174 0.00 0.00 0.00 4.30
1233 1322 2.863238 TCAATCCCTAGTACCTCCCTCA 59.137 50.000 0.00 0.00 0.00 3.86
1234 1323 3.117093 TCAATCCCTAGTACCTCCCTCAG 60.117 52.174 0.00 0.00 0.00 3.35
1238 1327 2.312390 CCTAGTACCTCCCTCAGCTTC 58.688 57.143 0.00 0.00 0.00 3.86
1253 1342 1.215647 CTTCCTTCTCCGTCCACCG 59.784 63.158 0.00 0.00 0.00 4.94
1264 1360 0.599558 CGTCCACCGGTCTTCTTACA 59.400 55.000 2.59 0.00 0.00 2.41
1270 1366 0.999406 CCGGTCTTCTTACATGTGCG 59.001 55.000 9.11 0.00 0.00 5.34
1287 1383 1.268488 TGCGTGCATGTCAAACTGTTC 60.268 47.619 7.93 0.00 0.00 3.18
1289 1385 1.333308 CGTGCATGTCAAACTGTTCCA 59.667 47.619 0.00 0.00 0.00 3.53
1290 1386 2.223456 CGTGCATGTCAAACTGTTCCAA 60.223 45.455 0.00 0.00 0.00 3.53
1291 1387 3.550639 CGTGCATGTCAAACTGTTCCAAT 60.551 43.478 0.00 0.00 0.00 3.16
1292 1388 4.370917 GTGCATGTCAAACTGTTCCAATT 58.629 39.130 0.00 0.00 0.00 2.32
1293 1389 5.527951 GTGCATGTCAAACTGTTCCAATTA 58.472 37.500 0.00 0.00 0.00 1.40
1294 1390 5.982516 GTGCATGTCAAACTGTTCCAATTAA 59.017 36.000 0.00 0.00 0.00 1.40
1295 1391 5.982516 TGCATGTCAAACTGTTCCAATTAAC 59.017 36.000 0.00 0.00 0.00 2.01
1296 1392 5.116983 GCATGTCAAACTGTTCCAATTAACG 59.883 40.000 0.00 0.00 31.76 3.18
1297 1393 5.821516 TGTCAAACTGTTCCAATTAACGT 57.178 34.783 0.00 0.00 31.76 3.99
1298 1394 5.574082 TGTCAAACTGTTCCAATTAACGTG 58.426 37.500 0.00 0.00 31.76 4.49
1318 1414 1.079612 TGCATGCACTCTGTCGGAG 60.080 57.895 18.46 7.16 46.87 4.63
1323 1419 1.550327 TGCACTCTGTCGGAGAAGAT 58.450 50.000 15.88 0.00 44.45 2.40
1325 1421 3.291584 TGCACTCTGTCGGAGAAGATAT 58.708 45.455 15.88 0.00 44.45 1.63
1356 1460 2.837532 TGCATGCACACTCTGTTAGA 57.162 45.000 18.46 0.00 0.00 2.10
1357 1461 2.416747 TGCATGCACACTCTGTTAGAC 58.583 47.619 18.46 0.00 0.00 2.59
1358 1462 2.224257 TGCATGCACACTCTGTTAGACA 60.224 45.455 18.46 0.00 0.00 3.41
1359 1463 2.807967 GCATGCACACTCTGTTAGACAA 59.192 45.455 14.21 0.00 0.00 3.18
1360 1464 3.250762 GCATGCACACTCTGTTAGACAAA 59.749 43.478 14.21 0.00 0.00 2.83
1365 1469 4.067896 CACACTCTGTTAGACAAAGGCAT 58.932 43.478 0.00 0.00 0.00 4.40
1379 1483 3.833304 GCATGGTAGCCAGCTTCC 58.167 61.111 8.27 8.27 36.75 3.46
1380 1484 1.077501 GCATGGTAGCCAGCTTCCA 60.078 57.895 18.72 18.72 45.27 3.53
1420 1531 4.502645 CCCAGTTCGTTTTTGTTTCATCAC 59.497 41.667 0.00 0.00 0.00 3.06
1421 1532 5.098893 CCAGTTCGTTTTTGTTTCATCACA 58.901 37.500 0.00 0.00 0.00 3.58
1427 1538 5.976534 TCGTTTTTGTTTCATCACATCCAAG 59.023 36.000 0.00 0.00 0.00 3.61
1428 1539 5.748152 CGTTTTTGTTTCATCACATCCAAGT 59.252 36.000 0.00 0.00 0.00 3.16
1429 1540 6.291743 CGTTTTTGTTTCATCACATCCAAGTG 60.292 38.462 0.00 0.00 40.85 3.16
1430 1541 4.852134 TTGTTTCATCACATCCAAGTGG 57.148 40.909 0.00 0.00 39.93 4.00
1453 1572 8.989980 GTGGAAGTGTAGTTATTATTATCAGCC 58.010 37.037 0.00 0.00 0.00 4.85
1454 1573 8.710239 TGGAAGTGTAGTTATTATTATCAGCCA 58.290 33.333 0.00 0.00 0.00 4.75
1455 1574 9.555727 GGAAGTGTAGTTATTATTATCAGCCAA 57.444 33.333 0.00 0.00 0.00 4.52
1477 1596 7.061789 GCCAAAGACAAAGTTAAATGGTTATCG 59.938 37.037 0.00 0.00 0.00 2.92
1479 1598 9.329913 CAAAGACAAAGTTAAATGGTTATCGAG 57.670 33.333 0.00 0.00 0.00 4.04
1480 1599 8.842358 AAGACAAAGTTAAATGGTTATCGAGA 57.158 30.769 0.00 0.00 0.00 4.04
1491 1610 8.608844 AAATGGTTATCGAGATTATCTGTTCC 57.391 34.615 0.00 0.00 0.00 3.62
1510 1632 7.553402 TCTGTTCCTACTAGTAGCTAGTTTCAG 59.447 40.741 22.39 19.12 43.82 3.02
1610 1746 3.306294 CCATGCCCAGGTCTTTCTTTTTC 60.306 47.826 0.00 0.00 0.00 2.29
1620 1756 4.112634 GTCTTTCTTTTTCAACCACAGGC 58.887 43.478 0.00 0.00 0.00 4.85
1648 1784 0.386858 TCACGTCGGCTTTTCTCTCG 60.387 55.000 0.00 0.00 0.00 4.04
1693 1845 0.400594 TCAGTCAGGAGTCAGGACGA 59.599 55.000 7.51 6.06 36.68 4.20
1714 1866 4.416620 GACTCTCGATTAATCTATGCCCG 58.583 47.826 13.45 0.00 0.00 6.13
1753 1913 2.297701 GACAACCTTTGCTTCCTGTGA 58.702 47.619 0.00 0.00 0.00 3.58
1755 1915 2.887152 ACAACCTTTGCTTCCTGTGATC 59.113 45.455 0.00 0.00 0.00 2.92
1778 1938 3.687572 CGTGTAACCGCACTAGAGTAT 57.312 47.619 0.00 0.00 37.24 2.12
1779 1939 4.801147 CGTGTAACCGCACTAGAGTATA 57.199 45.455 0.00 0.00 37.24 1.47
1780 1940 4.521943 CGTGTAACCGCACTAGAGTATAC 58.478 47.826 0.00 0.00 37.24 1.47
1781 1941 4.272018 CGTGTAACCGCACTAGAGTATACT 59.728 45.833 4.68 4.68 37.24 2.12
1789 1949 7.384477 ACCGCACTAGAGTATACTTTCTTTTT 58.616 34.615 6.88 0.00 0.00 1.94
1861 2021 1.391826 GAGCTAGCTGTGCTTTCGTTC 59.608 52.381 24.99 0.00 41.30 3.95
1869 2029 0.387239 GTGCTTTCGTTCCATGCACC 60.387 55.000 0.00 0.00 45.52 5.01
1878 2038 2.731968 CGTTCCATGCACCATAAACTGC 60.732 50.000 0.00 0.00 0.00 4.40
1886 2046 0.251165 ACCATAAACTGCCCGTTGCT 60.251 50.000 0.00 0.00 42.00 3.91
1887 2047 1.003812 ACCATAAACTGCCCGTTGCTA 59.996 47.619 0.00 0.00 42.00 3.49
1888 2048 2.088423 CCATAAACTGCCCGTTGCTAA 58.912 47.619 0.00 0.00 42.00 3.09
1889 2049 2.097466 CCATAAACTGCCCGTTGCTAAG 59.903 50.000 0.00 0.00 42.00 2.18
1947 2110 2.408050 ACAGCGACTGATTGTCTGTTC 58.592 47.619 12.77 0.00 43.25 3.18
1948 2111 2.036475 ACAGCGACTGATTGTCTGTTCT 59.964 45.455 12.77 0.00 43.25 3.01
1949 2112 2.411069 CAGCGACTGATTGTCTGTTCTG 59.589 50.000 1.18 0.00 43.25 3.02
1950 2113 2.036475 AGCGACTGATTGTCTGTTCTGT 59.964 45.455 0.00 0.00 43.25 3.41
1951 2114 2.802816 GCGACTGATTGTCTGTTCTGTT 59.197 45.455 0.00 0.00 43.25 3.16
1952 2115 3.987868 GCGACTGATTGTCTGTTCTGTTA 59.012 43.478 0.00 0.00 43.25 2.41
1975 2138 1.000233 TGCGAAATTGCAGGGGGAT 60.000 52.632 0.00 0.00 40.62 3.85
1991 2154 0.250338 GGATACGGCCCAAGATGACC 60.250 60.000 0.00 0.00 0.00 4.02
2273 2494 4.577677 TCGCACAGCCAGGCCAAA 62.578 61.111 8.22 0.00 0.00 3.28
2488 2709 1.870055 TTCGTCCTCCAGGTACGCAC 61.870 60.000 10.84 0.00 38.06 5.34
2489 2710 2.181021 GTCCTCCAGGTACGCACG 59.819 66.667 0.00 0.00 36.34 5.34
2490 2711 3.755628 TCCTCCAGGTACGCACGC 61.756 66.667 0.00 0.00 36.34 5.34
2491 2712 4.063967 CCTCCAGGTACGCACGCA 62.064 66.667 0.00 0.00 0.00 5.24
2552 2773 2.959465 AGCTAGCTTTGTTCCCTTGT 57.041 45.000 12.68 0.00 0.00 3.16
2554 2775 3.676093 AGCTAGCTTTGTTCCCTTGTAC 58.324 45.455 12.68 0.00 0.00 2.90
2556 2777 3.437049 GCTAGCTTTGTTCCCTTGTACAG 59.563 47.826 7.70 0.00 0.00 2.74
2557 2778 3.577805 AGCTTTGTTCCCTTGTACAGT 57.422 42.857 0.00 0.00 0.00 3.55
2558 2779 4.699925 AGCTTTGTTCCCTTGTACAGTA 57.300 40.909 0.00 0.00 0.00 2.74
2559 2780 5.242795 AGCTTTGTTCCCTTGTACAGTAT 57.757 39.130 0.00 0.00 0.00 2.12
2560 2781 6.368779 AGCTTTGTTCCCTTGTACAGTATA 57.631 37.500 0.00 0.00 0.00 1.47
2561 2782 6.171213 AGCTTTGTTCCCTTGTACAGTATAC 58.829 40.000 0.00 0.00 0.00 1.47
2562 2783 5.063060 GCTTTGTTCCCTTGTACAGTATACG 59.937 44.000 0.00 0.00 0.00 3.06
2563 2784 5.726980 TTGTTCCCTTGTACAGTATACGT 57.273 39.130 0.00 0.00 0.00 3.57
2564 2785 6.832520 TTGTTCCCTTGTACAGTATACGTA 57.167 37.500 0.00 0.00 0.00 3.57
2598 2819 3.167945 GCTCGCAAACGCATGCAC 61.168 61.111 19.57 0.00 46.76 4.57
2773 2994 0.731417 TCGTCTACTCGGTAAGCAGC 59.269 55.000 0.00 0.00 0.00 5.25
2793 3014 2.357836 CCCCCAGTCAAGCTGCAT 59.642 61.111 1.02 0.00 43.71 3.96
2794 3015 2.050350 CCCCCAGTCAAGCTGCATG 61.050 63.158 1.02 0.00 43.71 4.06
2795 3016 2.707849 CCCCAGTCAAGCTGCATGC 61.708 63.158 11.82 11.82 43.71 4.06
2796 3017 1.974875 CCCAGTCAAGCTGCATGCA 60.975 57.895 21.29 21.29 45.94 3.96
2833 3060 1.486211 CCAGTCGACCCCATTAGAGT 58.514 55.000 13.01 0.00 0.00 3.24
3055 3282 8.308931 AGGTGATTACGTTTCATCAGTAAACTA 58.691 33.333 12.35 0.00 35.20 2.24
3056 3283 8.378421 GGTGATTACGTTTCATCAGTAAACTAC 58.622 37.037 0.00 0.00 35.20 2.73
3124 3354 5.813080 AATCGGTTAACTAATCTTGTGGC 57.187 39.130 5.42 0.00 0.00 5.01
3226 3456 4.003788 AAGCCCGTCCACTCCGTG 62.004 66.667 0.00 0.00 0.00 4.94
3486 3747 1.512926 AGGAAGTTGCATGTGTCGAC 58.487 50.000 9.11 9.11 0.00 4.20
3487 3748 0.163788 GGAAGTTGCATGTGTCGACG 59.836 55.000 11.62 0.00 0.00 5.12
3488 3749 1.136690 GAAGTTGCATGTGTCGACGA 58.863 50.000 11.62 0.00 0.00 4.20
3580 3841 9.070179 GCTCCTTATTACTCTTTAGCTACTACT 57.930 37.037 0.00 0.00 0.00 2.57
3587 3848 6.394025 ACTCTTTAGCTACTACTACCATGC 57.606 41.667 0.00 0.00 0.00 4.06
3632 3893 0.304401 TTATGACGCGCATGCATGTC 59.696 50.000 26.79 24.83 42.97 3.06
3708 3969 3.921021 ACTACTTTCGATTCAACTGAGCG 59.079 43.478 0.00 0.00 0.00 5.03
3710 3971 1.728971 CTTTCGATTCAACTGAGCGCT 59.271 47.619 11.27 11.27 0.00 5.92
3711 3972 1.350193 TTCGATTCAACTGAGCGCTC 58.650 50.000 30.42 30.42 0.00 5.03
3712 3973 0.798389 TCGATTCAACTGAGCGCTCG 60.798 55.000 30.75 25.84 0.00 5.03
3713 3974 1.346538 GATTCAACTGAGCGCTCGC 59.653 57.895 30.75 11.22 42.33 5.03
3715 3976 2.513026 ATTCAACTGAGCGCTCGCCT 62.513 55.000 30.75 15.36 43.17 5.52
3743 4015 5.015515 AGTCCACTACTCCTAACACTAACC 58.984 45.833 0.00 0.00 30.33 2.85
3799 4071 6.658816 TCCTGTGTGTGCAATAATCAATAAGT 59.341 34.615 0.00 0.00 0.00 2.24
3800 4072 7.826744 TCCTGTGTGTGCAATAATCAATAAGTA 59.173 33.333 0.00 0.00 0.00 2.24
3801 4073 8.124823 CCTGTGTGTGCAATAATCAATAAGTAG 58.875 37.037 0.00 0.00 0.00 2.57
3802 4074 8.560355 TGTGTGTGCAATAATCAATAAGTAGT 57.440 30.769 0.00 0.00 0.00 2.73
3803 4075 9.660180 TGTGTGTGCAATAATCAATAAGTAGTA 57.340 29.630 0.00 0.00 0.00 1.82
3804 4076 9.916397 GTGTGTGCAATAATCAATAAGTAGTAC 57.084 33.333 0.00 0.00 0.00 2.73
4000 4285 2.234300 TCCGGCAGGAATAATTCGTC 57.766 50.000 1.89 0.00 45.12 4.20
4011 4296 6.143118 CAGGAATAATTCGTCTCTTTAGCTCG 59.857 42.308 0.00 0.00 0.00 5.03
4084 4369 1.009078 TCGTACGTCCACGATCGATT 58.991 50.000 24.34 0.00 45.45 3.34
4098 4385 5.850653 CACGATCGATTGTCTTATCTCTCTG 59.149 44.000 24.34 0.00 0.00 3.35
4127 4420 0.535102 CCGTGCAGGACAAAACTCCT 60.535 55.000 8.24 0.00 45.00 3.69
4128 4421 1.270625 CCGTGCAGGACAAAACTCCTA 60.271 52.381 8.24 0.00 45.00 2.94
4129 4422 2.069273 CGTGCAGGACAAAACTCCTAG 58.931 52.381 0.00 0.00 38.77 3.02
4208 4501 3.490851 GCCGGGGATATGGCCTAA 58.509 61.111 3.32 0.00 45.73 2.69
4210 4503 0.111639 GCCGGGGATATGGCCTAAAA 59.888 55.000 3.32 0.00 45.73 1.52
4211 4504 1.886655 GCCGGGGATATGGCCTAAAAG 60.887 57.143 3.32 0.00 45.73 2.27
4255 4551 5.298276 AGAAGACGAAGATCATCACTACTCC 59.702 44.000 0.00 0.00 0.00 3.85
4256 4552 4.787551 AGACGAAGATCATCACTACTCCT 58.212 43.478 0.00 0.00 0.00 3.69
4257 4553 5.931294 AGACGAAGATCATCACTACTCCTA 58.069 41.667 0.00 0.00 0.00 2.94
4258 4554 5.761234 AGACGAAGATCATCACTACTCCTAC 59.239 44.000 0.00 0.00 0.00 3.18
4259 4555 5.686753 ACGAAGATCATCACTACTCCTACT 58.313 41.667 0.00 0.00 0.00 2.57
4260 4556 5.761234 ACGAAGATCATCACTACTCCTACTC 59.239 44.000 0.00 0.00 0.00 2.59
4261 4557 5.995282 CGAAGATCATCACTACTCCTACTCT 59.005 44.000 0.00 0.00 0.00 3.24
4277 4573 1.805428 CTCTTTGTTGGTTGGGCCCG 61.805 60.000 19.37 0.00 36.04 6.13
4325 4622 1.659098 CGGAAAAGAGATACGGTGTGC 59.341 52.381 0.00 0.00 0.00 4.57
4344 4641 1.071605 CGGCGAGTTGAGAAAAGAGG 58.928 55.000 0.00 0.00 0.00 3.69
4363 4660 1.290203 GCGCCTTTTCTGATCGATCA 58.710 50.000 25.80 25.80 35.16 2.92
4364 4661 1.869767 GCGCCTTTTCTGATCGATCAT 59.130 47.619 27.43 0.00 36.02 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.033909 AGCACTACCAGTAGATGATGCA 58.966 45.455 11.71 0.00 35.30 3.96
51 52 3.632333 TGTGCTAGCACTACCAGTAGAT 58.368 45.455 39.44 0.54 46.30 1.98
56 57 0.176680 CCCTGTGCTAGCACTACCAG 59.823 60.000 39.44 29.75 46.30 4.00
64 65 1.831652 ATATCCGGCCCTGTGCTAGC 61.832 60.000 8.10 8.10 40.92 3.42
71 72 3.214696 AGAGAAAAATATCCGGCCCTG 57.785 47.619 0.00 0.00 0.00 4.45
76 77 6.598064 AGTGGTTACAAGAGAAAAATATCCGG 59.402 38.462 0.00 0.00 0.00 5.14
77 78 7.611213 AGTGGTTACAAGAGAAAAATATCCG 57.389 36.000 0.00 0.00 0.00 4.18
103 104 4.745478 GCGTCAATTAATATGGGGTGGAGA 60.745 45.833 0.00 0.00 0.00 3.71
134 135 3.803715 GCATGCTACCGTCCAGATACATT 60.804 47.826 11.37 0.00 0.00 2.71
143 144 0.314302 ACGATAGCATGCTACCGTCC 59.686 55.000 35.98 18.34 44.63 4.79
178 180 5.598005 TGTGTTTTGGGACTTCATTCATTCT 59.402 36.000 0.00 0.00 0.00 2.40
181 183 4.648762 TGTGTGTTTTGGGACTTCATTCAT 59.351 37.500 0.00 0.00 0.00 2.57
191 193 9.747898 ATTATAGTAGAAATGTGTGTTTTGGGA 57.252 29.630 0.00 0.00 0.00 4.37
244 272 3.056328 GGGCAGCTGGGTTCGAAC 61.056 66.667 20.14 20.14 0.00 3.95
297 325 3.688049 ATGAATGGGTTAAAGAGGGGG 57.312 47.619 0.00 0.00 0.00 5.40
298 326 4.609301 TCAATGAATGGGTTAAAGAGGGG 58.391 43.478 0.00 0.00 0.00 4.79
299 327 6.380846 TCAATCAATGAATGGGTTAAAGAGGG 59.619 38.462 0.00 0.00 34.30 4.30
311 339 6.262496 ACTGGCTAGTCATCAATCAATGAATG 59.738 38.462 0.00 0.00 37.41 2.67
312 340 6.363065 ACTGGCTAGTCATCAATCAATGAAT 58.637 36.000 0.00 0.00 37.41 2.57
313 341 5.748402 ACTGGCTAGTCATCAATCAATGAA 58.252 37.500 0.00 0.00 37.41 2.57
314 342 5.363562 ACTGGCTAGTCATCAATCAATGA 57.636 39.130 0.00 0.00 35.71 2.57
341 369 2.258013 TGGCAAGCGTTTCCCGAAG 61.258 57.895 0.00 0.00 39.56 3.79
404 445 4.148825 GCCGCCTGGATGTCGTCT 62.149 66.667 0.00 0.00 37.49 4.18
485 527 4.514577 ATCCACTTCCGGAGCGCG 62.515 66.667 3.34 0.00 38.83 6.86
488 530 2.107141 CCGATCCACTTCCGGAGC 59.893 66.667 3.34 0.00 45.58 4.70
489 531 2.107141 GCCGATCCACTTCCGGAG 59.893 66.667 3.34 1.34 45.58 4.63
490 532 2.287274 TTGCCGATCCACTTCCGGA 61.287 57.895 0.00 0.00 45.58 5.14
567 633 4.874977 GGGCGCCACGAGCTCTAC 62.875 72.222 30.85 1.84 40.39 2.59
593 659 1.296715 CCCAGTTTCCCGTCCTCAG 59.703 63.158 0.00 0.00 0.00 3.35
597 663 2.671963 GCACCCAGTTTCCCGTCC 60.672 66.667 0.00 0.00 0.00 4.79
601 667 2.983592 CCGTGCACCCAGTTTCCC 60.984 66.667 12.15 0.00 0.00 3.97
607 673 3.883744 GAGTCACCCGTGCACCCAG 62.884 68.421 12.15 2.31 0.00 4.45
688 765 0.103208 AGCTAGAGTATGTGCGTGCC 59.897 55.000 0.00 0.00 0.00 5.01
784 861 2.812011 CAATTTATAGCGGGGTACAGGC 59.188 50.000 0.00 0.00 0.00 4.85
848 925 0.320596 GCTGCTGAGCTCAGACAACT 60.321 55.000 41.20 0.00 46.59 3.16
849 926 1.297456 GGCTGCTGAGCTCAGACAAC 61.297 60.000 41.20 30.39 46.59 3.32
850 927 1.004080 GGCTGCTGAGCTCAGACAA 60.004 57.895 41.20 25.70 46.59 3.18
851 928 2.212110 TGGCTGCTGAGCTCAGACA 61.212 57.895 41.20 33.45 46.53 3.41
1128 1210 2.092882 GTTGCGGTAGGTGACGAGC 61.093 63.158 0.00 0.00 34.21 5.03
1208 1297 3.140519 GGGAGGTACTAGGGATTGAGAGA 59.859 52.174 0.00 0.00 41.55 3.10
1212 1301 2.863238 TGAGGGAGGTACTAGGGATTGA 59.137 50.000 0.00 0.00 41.55 2.57
1218 1307 2.312390 GAAGCTGAGGGAGGTACTAGG 58.688 57.143 0.00 0.00 41.55 3.02
1222 1311 1.483004 GAAGGAAGCTGAGGGAGGTAC 59.517 57.143 0.00 0.00 0.00 3.34
1223 1312 1.362932 AGAAGGAAGCTGAGGGAGGTA 59.637 52.381 0.00 0.00 0.00 3.08
1224 1313 0.118144 AGAAGGAAGCTGAGGGAGGT 59.882 55.000 0.00 0.00 0.00 3.85
1225 1314 0.829990 GAGAAGGAAGCTGAGGGAGG 59.170 60.000 0.00 0.00 0.00 4.30
1226 1315 0.829990 GGAGAAGGAAGCTGAGGGAG 59.170 60.000 0.00 0.00 0.00 4.30
1227 1316 0.972983 CGGAGAAGGAAGCTGAGGGA 60.973 60.000 0.00 0.00 0.00 4.20
1228 1317 1.261238 ACGGAGAAGGAAGCTGAGGG 61.261 60.000 0.00 0.00 0.00 4.30
1229 1318 0.174617 GACGGAGAAGGAAGCTGAGG 59.825 60.000 0.00 0.00 0.00 3.86
1230 1319 0.174617 GGACGGAGAAGGAAGCTGAG 59.825 60.000 0.00 0.00 0.00 3.35
1231 1320 0.541998 TGGACGGAGAAGGAAGCTGA 60.542 55.000 0.00 0.00 0.00 4.26
1232 1321 0.390472 GTGGACGGAGAAGGAAGCTG 60.390 60.000 0.00 0.00 0.00 4.24
1233 1322 1.545706 GGTGGACGGAGAAGGAAGCT 61.546 60.000 0.00 0.00 0.00 3.74
1234 1323 1.079057 GGTGGACGGAGAAGGAAGC 60.079 63.158 0.00 0.00 0.00 3.86
1253 1342 1.128692 GCACGCACATGTAAGAAGACC 59.871 52.381 0.00 0.00 0.00 3.85
1264 1360 0.953727 AGTTTGACATGCACGCACAT 59.046 45.000 0.00 0.00 0.00 3.21
1270 1366 3.435105 TTGGAACAGTTTGACATGCAC 57.565 42.857 0.00 0.00 42.39 4.57
1287 1383 1.270971 GCATGCAGCACGTTAATTGG 58.729 50.000 14.21 0.00 44.79 3.16
1298 1394 2.747822 CCGACAGAGTGCATGCAGC 61.748 63.158 23.41 16.47 45.96 5.25
1347 1451 3.679389 ACCATGCCTTTGTCTAACAGAG 58.321 45.455 0.00 0.00 30.84 3.35
1348 1452 3.788227 ACCATGCCTTTGTCTAACAGA 57.212 42.857 0.00 0.00 0.00 3.41
1349 1453 3.375299 GCTACCATGCCTTTGTCTAACAG 59.625 47.826 0.00 0.00 0.00 3.16
1350 1454 3.343617 GCTACCATGCCTTTGTCTAACA 58.656 45.455 0.00 0.00 0.00 2.41
1365 1469 0.991146 TCAATGGAAGCTGGCTACCA 59.009 50.000 0.00 0.00 36.83 3.25
1376 1480 3.573967 GGCTTCTGAAACCTTCAATGGAA 59.426 43.478 2.59 0.00 39.58 3.53
1377 1481 3.157087 GGCTTCTGAAACCTTCAATGGA 58.843 45.455 2.59 0.00 39.58 3.41
1378 1482 2.232208 GGGCTTCTGAAACCTTCAATGG 59.768 50.000 9.52 0.00 39.58 3.16
1379 1483 2.892852 TGGGCTTCTGAAACCTTCAATG 59.107 45.455 9.52 0.00 39.58 2.82
1380 1484 3.160269 CTGGGCTTCTGAAACCTTCAAT 58.840 45.455 9.52 0.00 39.58 2.57
1381 1485 2.091885 ACTGGGCTTCTGAAACCTTCAA 60.092 45.455 9.52 0.00 39.58 2.69
1386 1497 0.875059 CGAACTGGGCTTCTGAAACC 59.125 55.000 1.11 1.11 0.00 3.27
1420 1531 8.964476 ATAATAACTACACTTCCACTTGGATG 57.036 34.615 9.14 9.14 44.98 3.51
1427 1538 8.989980 GGCTGATAATAATAACTACACTTCCAC 58.010 37.037 0.00 0.00 0.00 4.02
1428 1539 8.710239 TGGCTGATAATAATAACTACACTTCCA 58.290 33.333 0.00 0.00 0.00 3.53
1429 1540 9.555727 TTGGCTGATAATAATAACTACACTTCC 57.444 33.333 0.00 0.00 0.00 3.46
1451 1570 7.061789 CGATAACCATTTAACTTTGTCTTTGGC 59.938 37.037 0.00 0.00 0.00 4.52
1453 1572 9.329913 CTCGATAACCATTTAACTTTGTCTTTG 57.670 33.333 0.00 0.00 0.00 2.77
1454 1573 9.280174 TCTCGATAACCATTTAACTTTGTCTTT 57.720 29.630 0.00 0.00 0.00 2.52
1455 1574 8.842358 TCTCGATAACCATTTAACTTTGTCTT 57.158 30.769 0.00 0.00 0.00 3.01
1456 1575 9.449719 AATCTCGATAACCATTTAACTTTGTCT 57.550 29.630 0.00 0.00 0.00 3.41
1465 1584 9.706691 GGAACAGATAATCTCGATAACCATTTA 57.293 33.333 0.00 0.00 0.00 1.40
1477 1596 8.857694 AGCTACTAGTAGGAACAGATAATCTC 57.142 38.462 27.24 8.68 33.87 2.75
1479 1598 9.729281 ACTAGCTACTAGTAGGAACAGATAATC 57.271 37.037 27.24 9.23 44.35 1.75
1491 1610 8.894731 TGATTGACTGAAACTAGCTACTAGTAG 58.105 37.037 23.25 23.25 45.28 2.57
1510 1632 5.577164 AGTGCTTGATTACGTAGTGATTGAC 59.423 40.000 0.00 0.00 45.73 3.18
1575 1698 1.871772 GCATGGATGCGATAGGTGC 59.128 57.895 0.00 0.00 44.67 5.01
1610 1746 4.675510 GTGAATGAATATGCCTGTGGTTG 58.324 43.478 0.00 0.00 0.00 3.77
1620 1756 4.536364 AAAGCCGACGTGAATGAATATG 57.464 40.909 0.00 0.00 0.00 1.78
1648 1784 1.977009 CACGGAAAGGAAAGGGGGC 60.977 63.158 0.00 0.00 0.00 5.80
1693 1845 4.079970 TCGGGCATAGATTAATCGAGAGT 58.920 43.478 9.78 0.00 0.00 3.24
1698 1850 2.094906 TCGGTCGGGCATAGATTAATCG 60.095 50.000 9.78 0.00 0.00 3.34
1714 1866 2.332654 GGGGTTGCATGTGTCGGTC 61.333 63.158 0.00 0.00 0.00 4.79
1773 1933 9.893305 TTTGCTTGCTAAAAAGAAAGTATACTC 57.107 29.630 5.70 0.00 0.00 2.59
1777 1937 7.436933 AGCTTTGCTTGCTAAAAAGAAAGTAT 58.563 30.769 7.72 0.00 39.21 2.12
1778 1938 6.805713 AGCTTTGCTTGCTAAAAAGAAAGTA 58.194 32.000 7.72 0.00 39.21 2.24
1779 1939 5.664457 AGCTTTGCTTGCTAAAAAGAAAGT 58.336 33.333 7.72 0.00 39.21 2.66
1822 1982 1.004628 TCAGAGCTGGGCATTAGCAAA 59.995 47.619 0.00 0.00 43.53 3.68
1861 2021 0.461135 GGGCAGTTTATGGTGCATGG 59.539 55.000 0.00 0.00 41.75 3.66
1878 2038 3.660865 AGACAAGTTACTTAGCAACGGG 58.339 45.455 0.00 0.00 0.00 5.28
1886 2046 4.952460 AGACGCCAAAGACAAGTTACTTA 58.048 39.130 0.00 0.00 0.00 2.24
1887 2047 3.805207 AGACGCCAAAGACAAGTTACTT 58.195 40.909 0.00 0.00 0.00 2.24
1888 2048 3.470645 AGACGCCAAAGACAAGTTACT 57.529 42.857 0.00 0.00 0.00 2.24
1889 2049 3.311596 ACAAGACGCCAAAGACAAGTTAC 59.688 43.478 0.00 0.00 0.00 2.50
1947 2110 3.244156 TGCAATTTCGCAAGCATAACAG 58.756 40.909 0.00 0.00 39.45 3.16
1948 2111 3.244156 CTGCAATTTCGCAAGCATAACA 58.756 40.909 0.00 0.00 42.45 2.41
1949 2112 2.599973 CCTGCAATTTCGCAAGCATAAC 59.400 45.455 0.00 0.00 42.45 1.89
1950 2113 2.417107 CCCTGCAATTTCGCAAGCATAA 60.417 45.455 0.00 0.00 42.45 1.90
1951 2114 1.134753 CCCTGCAATTTCGCAAGCATA 59.865 47.619 0.00 0.00 42.45 3.14
1952 2115 0.108520 CCCTGCAATTTCGCAAGCAT 60.109 50.000 0.00 0.00 42.45 3.79
1975 2138 1.306654 AGGGTCATCTTGGGCCGTA 60.307 57.895 0.00 0.00 0.00 4.02
1991 2154 2.609427 TCTTGATGAAGATGCGGAGG 57.391 50.000 0.00 0.00 32.98 4.30
2076 2245 3.560068 CCACGAATATTGTTAGCCACTCC 59.440 47.826 0.00 0.00 0.00 3.85
2078 2247 3.054655 ACCCACGAATATTGTTAGCCACT 60.055 43.478 0.00 0.00 0.00 4.00
2080 2249 3.637911 ACCCACGAATATTGTTAGCCA 57.362 42.857 0.00 0.00 0.00 4.75
2081 2250 3.314357 GGAACCCACGAATATTGTTAGCC 59.686 47.826 0.00 0.00 0.00 3.93
2258 2479 2.914097 ACTTTGGCCTGGCTGTGC 60.914 61.111 19.68 1.77 0.00 4.57
2273 2494 4.457496 CAGATGGTGCCGGCGACT 62.457 66.667 23.90 13.02 0.00 4.18
2409 2630 3.650950 GCCCTTGAGCCAGGTGGA 61.651 66.667 0.00 0.00 37.39 4.02
2535 2756 4.642429 ACTGTACAAGGGAACAAAGCTAG 58.358 43.478 0.00 0.00 0.00 3.42
2552 2773 8.282592 CGCAATTAAGGTACTACGTATACTGTA 58.717 37.037 0.00 4.65 38.49 2.74
2554 2775 6.087291 GCGCAATTAAGGTACTACGTATACTG 59.913 42.308 0.30 0.00 38.49 2.74
2556 2777 5.343325 GGCGCAATTAAGGTACTACGTATAC 59.657 44.000 10.83 1.46 38.49 1.47
2557 2778 5.460646 GGCGCAATTAAGGTACTACGTATA 58.539 41.667 10.83 0.00 38.49 1.47
2558 2779 4.301628 GGCGCAATTAAGGTACTACGTAT 58.698 43.478 10.83 0.00 38.49 3.06
2559 2780 3.705604 GGCGCAATTAAGGTACTACGTA 58.294 45.455 10.83 0.00 38.49 3.57
2560 2781 2.543641 GGCGCAATTAAGGTACTACGT 58.456 47.619 10.83 0.00 38.49 3.57
2561 2782 1.519758 CGGCGCAATTAAGGTACTACG 59.480 52.381 10.83 0.00 38.49 3.51
2562 2783 1.259770 GCGGCGCAATTAAGGTACTAC 59.740 52.381 29.21 0.00 38.49 2.73
2563 2784 1.137479 AGCGGCGCAATTAAGGTACTA 59.863 47.619 35.02 0.00 38.49 1.82
2590 2811 3.776849 TTCGACTGCGTGCATGCG 61.777 61.111 25.05 20.74 38.98 4.73
2598 2819 2.300066 TTGAGCGTGTTCGACTGCG 61.300 57.895 0.00 0.00 39.71 5.18
2647 2868 2.664185 CCCATCGCGCAGATCAGG 60.664 66.667 8.75 10.25 37.52 3.86
3124 3354 3.196463 GCCAATCACACTGAGATGAGAG 58.804 50.000 0.00 0.00 0.00 3.20
3389 3650 1.261619 GTAGTACGTACGTAGGCGCAT 59.738 52.381 27.48 3.98 42.83 4.73
3486 3747 3.402058 AAGAAACTAGACCGTCGATCG 57.598 47.619 9.36 9.36 39.52 3.69
3487 3748 7.752557 AAATAAAGAAACTAGACCGTCGATC 57.247 36.000 0.00 0.00 0.00 3.69
3488 3749 7.816031 TCAAAATAAAGAAACTAGACCGTCGAT 59.184 33.333 0.00 0.00 0.00 3.59
3580 3841 7.416551 CCAATGATCAAAGTTACATGCATGGTA 60.417 37.037 29.41 16.37 0.00 3.25
3582 3843 5.751509 CCAATGATCAAAGTTACATGCATGG 59.248 40.000 29.41 12.50 0.00 3.66
3583 3844 6.474427 GTCCAATGATCAAAGTTACATGCATG 59.526 38.462 25.09 25.09 0.00 4.06
3584 3845 6.406177 GGTCCAATGATCAAAGTTACATGCAT 60.406 38.462 0.00 0.00 0.00 3.96
3585 3846 5.105797 GGTCCAATGATCAAAGTTACATGCA 60.106 40.000 0.00 0.00 0.00 3.96
3586 3847 5.126061 AGGTCCAATGATCAAAGTTACATGC 59.874 40.000 0.00 0.00 0.00 4.06
3587 3848 6.558009 CAGGTCCAATGATCAAAGTTACATG 58.442 40.000 0.00 0.00 0.00 3.21
3708 3969 0.533032 AGTGGACTAAAGAGGCGAGC 59.467 55.000 0.00 0.00 0.00 5.03
3710 3971 3.015327 GAGTAGTGGACTAAAGAGGCGA 58.985 50.000 0.00 0.00 39.06 5.54
3711 3972 2.099427 GGAGTAGTGGACTAAAGAGGCG 59.901 54.545 0.00 0.00 39.06 5.52
3712 3973 3.367321 AGGAGTAGTGGACTAAAGAGGC 58.633 50.000 0.00 0.00 39.06 4.70
3713 3974 5.950549 TGTTAGGAGTAGTGGACTAAAGAGG 59.049 44.000 0.00 0.00 39.06 3.69
3715 3976 6.550163 AGTGTTAGGAGTAGTGGACTAAAGA 58.450 40.000 0.00 0.00 39.06 2.52
3743 4015 3.709987 CACTTTGCTTTTCTCAACTGGG 58.290 45.455 0.00 0.00 0.00 4.45
3816 4088 7.484975 AGTGTTAAGCTAGATAGTTGCTACAG 58.515 38.462 0.13 0.00 35.85 2.74
3828 4100 8.053963 AGGATCAAGTAGTAGTGTTAAGCTAGA 58.946 37.037 0.00 0.00 0.00 2.43
4000 4285 1.519455 CCGGCACCGAGCTAAAGAG 60.519 63.158 11.42 0.00 44.79 2.85
4084 4369 6.239430 GGCCATGATAACAGAGAGATAAGACA 60.239 42.308 0.00 0.00 0.00 3.41
4098 4385 0.463654 TCCTGCACGGCCATGATAAC 60.464 55.000 1.12 0.00 0.00 1.89
4255 4551 1.886542 GGCCCAACCAACAAAGAGTAG 59.113 52.381 0.00 0.00 38.86 2.57
4256 4552 1.479757 GGGCCCAACCAACAAAGAGTA 60.480 52.381 19.95 0.00 42.05 2.59
4257 4553 0.759060 GGGCCCAACCAACAAAGAGT 60.759 55.000 19.95 0.00 42.05 3.24
4258 4554 1.805428 CGGGCCCAACCAACAAAGAG 61.805 60.000 24.92 0.00 42.05 2.85
4259 4555 1.830408 CGGGCCCAACCAACAAAGA 60.830 57.895 24.92 0.00 42.05 2.52
4260 4556 1.681486 AACGGGCCCAACCAACAAAG 61.681 55.000 24.92 3.12 42.05 2.77
4261 4557 1.686110 AACGGGCCCAACCAACAAA 60.686 52.632 24.92 0.00 42.05 2.83
4325 4622 1.071605 CCTCTTTTCTCAACTCGCCG 58.928 55.000 0.00 0.00 0.00 6.46
4344 4641 1.290203 TGATCGATCAGAAAAGGCGC 58.710 50.000 23.99 0.00 32.11 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.