Multiple sequence alignment - TraesCS7A01G168500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G168500 chr7A 100.000 5546 0 0 1 5546 125261809 125267354 0.000000e+00 10242.0
1 TraesCS7A01G168500 chr7D 94.402 2644 91 21 2297 4902 120322959 120325583 0.000000e+00 4010.0
2 TraesCS7A01G168500 chr7D 93.847 1739 39 17 583 2298 120321210 120322903 0.000000e+00 2556.0
3 TraesCS7A01G168500 chr7B 92.504 2001 90 19 2888 4846 81692831 81694813 0.000000e+00 2809.0
4 TraesCS7A01G168500 chr7B 93.470 1761 61 27 254 1977 81690308 81692051 0.000000e+00 2566.0
5 TraesCS7A01G168500 chr7B 91.031 524 28 6 2302 2809 81692310 81692830 0.000000e+00 689.0
6 TraesCS7A01G168500 chr7B 94.359 195 11 0 1977 2171 81692100 81692294 3.250000e-77 300.0
7 TraesCS7A01G168500 chr7B 82.918 281 27 9 3697 3956 742260313 742260033 3.340000e-57 233.0
8 TraesCS7A01G168500 chr7B 78.481 158 17 10 5150 5305 81772478 81772620 2.750000e-13 87.9
9 TraesCS7A01G168500 chr6B 86.743 611 80 1 1061 1670 631203475 631202865 0.000000e+00 678.0
10 TraesCS7A01G168500 chr6B 86.179 615 82 3 1058 1670 630846918 630847531 0.000000e+00 662.0
11 TraesCS7A01G168500 chr6B 90.698 43 3 1 2481 2522 670277378 670277336 7.760000e-04 56.5
12 TraesCS7A01G168500 chr6A 86.623 613 79 3 1061 1671 562377856 562377245 0.000000e+00 675.0
13 TraesCS7A01G168500 chr6D 86.088 611 83 2 1062 1671 418742534 418741925 0.000000e+00 656.0
14 TraesCS7A01G168500 chr6D 85.294 306 24 5 3695 3980 233990170 233990474 4.200000e-76 296.0
15 TraesCS7A01G168500 chr6D 90.222 225 19 3 3734 3956 251231738 251231961 1.950000e-74 291.0
16 TraesCS7A01G168500 chr4B 87.739 261 25 4 3702 3956 649357548 649357289 1.170000e-76 298.0
17 TraesCS7A01G168500 chr4B 92.121 165 7 4 2804 2963 24565234 24565071 1.550000e-55 228.0
18 TraesCS7A01G168500 chr1A 90.222 225 19 3 3734 3956 540723129 540722906 1.950000e-74 291.0
19 TraesCS7A01G168500 chr1A 86.905 252 32 1 3703 3953 541061898 541062149 1.180000e-71 281.0
20 TraesCS7A01G168500 chr1A 90.909 55 5 0 450 504 60876882 60876936 2.140000e-09 75.0
21 TraesCS7A01G168500 chr4D 86.380 279 20 3 3704 3964 172515798 172516076 7.030000e-74 289.0
22 TraesCS7A01G168500 chr4D 85.274 292 24 5 3706 3978 508709705 508709414 3.270000e-72 283.0
23 TraesCS7A01G168500 chr4D 85.985 264 28 7 3709 3964 460585885 460585623 1.970000e-69 274.0
24 TraesCS7A01G168500 chr4D 89.444 180 9 7 2791 2963 220360625 220360449 9.350000e-53 219.0
25 TraesCS7A01G168500 chr4D 90.385 52 5 0 2419 2470 488649878 488649827 9.970000e-08 69.4
26 TraesCS7A01G168500 chr1B 86.831 243 29 2 3709 3948 668206661 668206419 9.160000e-68 268.0
27 TraesCS7A01G168500 chr1B 93.182 44 2 1 3939 3981 155495949 155495992 4.640000e-06 63.9
28 TraesCS7A01G168500 chr5A 84.328 268 36 6 3692 3956 41348062 41348326 1.980000e-64 257.0
29 TraesCS7A01G168500 chr5A 97.059 34 1 0 2442 2475 670405699 670405666 2.160000e-04 58.4
30 TraesCS7A01G168500 chr2D 83.883 273 23 10 3734 3986 383285546 383285275 2.000000e-59 241.0
31 TraesCS7A01G168500 chr2D 82.394 284 29 9 3690 3953 114726969 114727251 1.550000e-55 228.0
32 TraesCS7A01G168500 chr5B 91.908 173 9 3 2804 2971 550926513 550926341 2.580000e-58 237.0
33 TraesCS7A01G168500 chr5B 90.303 165 10 4 2804 2963 1751180 1751343 1.570000e-50 211.0
34 TraesCS7A01G168500 chr5B 100.000 30 0 0 4932 4961 692448211 692448240 7.760000e-04 56.5
35 TraesCS7A01G168500 chr3A 92.073 164 6 2 2804 2960 699981621 699981784 2.010000e-54 224.0
36 TraesCS7A01G168500 chr3D 82.657 271 26 8 3739 3990 588147871 588148139 2.600000e-53 220.0
37 TraesCS7A01G168500 chr2A 91.463 164 5 3 2804 2958 437970443 437970606 3.360000e-52 217.0
38 TraesCS7A01G168500 chr2A 96.154 104 4 0 2835 2938 394748123 394748226 2.660000e-38 171.0
39 TraesCS7A01G168500 chr2A 100.000 29 0 0 450 478 766960237 766960265 3.000000e-03 54.7
40 TraesCS7A01G168500 chr4A 89.017 173 10 4 2804 2969 674590158 674590328 7.280000e-49 206.0
41 TraesCS7A01G168500 chr4A 86.667 60 7 1 2704 2763 731241275 731241333 1.290000e-06 65.8
42 TraesCS7A01G168500 chrUn 90.698 43 3 1 2481 2522 163400428 163400386 7.760000e-04 56.5
43 TraesCS7A01G168500 chrUn 90.698 43 3 1 2481 2522 189218556 189218598 7.760000e-04 56.5
44 TraesCS7A01G168500 chrUn 90.698 43 3 1 2481 2522 340320481 340320523 7.760000e-04 56.5
45 TraesCS7A01G168500 chrUn 90.698 43 3 1 2481 2522 349710697 349710739 7.760000e-04 56.5
46 TraesCS7A01G168500 chrUn 90.698 43 3 1 2481 2522 409444359 409444401 7.760000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G168500 chr7A 125261809 125267354 5545 False 10242 10242 100.0000 1 5546 1 chr7A.!!$F1 5545
1 TraesCS7A01G168500 chr7D 120321210 120325583 4373 False 3283 4010 94.1245 583 4902 2 chr7D.!!$F1 4319
2 TraesCS7A01G168500 chr7B 81690308 81694813 4505 False 1591 2809 92.8410 254 4846 4 chr7B.!!$F2 4592
3 TraesCS7A01G168500 chr6B 631202865 631203475 610 True 678 678 86.7430 1061 1670 1 chr6B.!!$R1 609
4 TraesCS7A01G168500 chr6B 630846918 630847531 613 False 662 662 86.1790 1058 1670 1 chr6B.!!$F1 612
5 TraesCS7A01G168500 chr6A 562377245 562377856 611 True 675 675 86.6230 1061 1671 1 chr6A.!!$R1 610
6 TraesCS7A01G168500 chr6D 418741925 418742534 609 True 656 656 86.0880 1062 1671 1 chr6D.!!$R1 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 528 0.175989 CGTCTCCTCCTGCTAAACCC 59.824 60.000 0.00 0.0 0.00 4.11 F
713 730 0.193574 GATATGGGTCCCCTCCTCCA 59.806 60.000 5.13 0.0 36.94 3.86 F
2112 2209 1.603455 ACAGTTGGCGGTTGGATGG 60.603 57.895 0.00 0.0 0.00 3.51 F
2333 2487 0.106149 ATTGATAAGTCCGGGTCCGC 59.894 55.000 0.00 0.0 38.24 5.54 F
3890 4122 2.079170 TGATGTGAACCAAAGGGCAA 57.921 45.000 0.00 0.0 37.90 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2331 2485 0.521242 GCCTAATGAAGTTGCACGCG 60.521 55.000 3.53 3.53 0.00 6.01 R
2333 2487 2.076100 TCAGCCTAATGAAGTTGCACG 58.924 47.619 0.00 0.00 0.00 5.34 R
4001 4233 0.597568 TTGATGCGGCTTGGTTCAAG 59.402 50.000 0.00 3.50 43.57 3.02 R
4257 4494 2.069776 CCCAGGACAAGCAGGAGAA 58.930 57.895 0.00 0.00 0.00 2.87 R
5043 5282 0.032017 AGCCGAATCCCTGGAGTAGT 60.032 55.000 0.00 0.00 0.00 2.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 9.932699 TGTTGATAATTTCAAATTTTGCTTGTG 57.067 25.926 0.00 0.00 45.71 3.33
77 78 9.934190 GTTGATAATTTCAAATTTTGCTTGTGT 57.066 25.926 0.00 0.00 45.71 3.72
129 130 9.461312 AAAAGGAAATTCCAACTTTTTAAAGCT 57.539 25.926 15.21 0.00 39.37 3.74
130 131 8.437360 AAGGAAATTCCAACTTTTTAAAGCTG 57.563 30.769 15.21 0.96 39.61 4.24
131 132 7.791029 AGGAAATTCCAACTTTTTAAAGCTGA 58.209 30.769 15.21 0.00 39.61 4.26
132 133 8.264347 AGGAAATTCCAACTTTTTAAAGCTGAA 58.736 29.630 15.21 5.91 39.61 3.02
133 134 8.888716 GGAAATTCCAACTTTTTAAAGCTGAAA 58.111 29.630 7.23 0.00 36.64 2.69
134 135 9.702726 GAAATTCCAACTTTTTAAAGCTGAAAC 57.297 29.630 7.09 0.94 39.63 2.78
135 136 8.785329 AATTCCAACTTTTTAAAGCTGAAACA 57.215 26.923 7.09 0.00 39.63 2.83
136 137 8.962884 ATTCCAACTTTTTAAAGCTGAAACAT 57.037 26.923 7.09 0.00 39.63 2.71
137 138 8.785329 TTCCAACTTTTTAAAGCTGAAACATT 57.215 26.923 7.09 0.00 39.63 2.71
138 139 8.785329 TCCAACTTTTTAAAGCTGAAACATTT 57.215 26.923 7.09 0.00 39.63 2.32
139 140 9.225436 TCCAACTTTTTAAAGCTGAAACATTTT 57.775 25.926 7.09 0.00 39.63 1.82
140 141 9.276397 CCAACTTTTTAAAGCTGAAACATTTTG 57.724 29.630 7.09 0.00 39.63 2.44
143 144 9.651913 ACTTTTTAAAGCTGAAACATTTTGAGA 57.348 25.926 2.23 0.00 39.63 3.27
145 146 7.698836 TTTAAAGCTGAAACATTTTGAGAGC 57.301 32.000 0.00 0.00 0.00 4.09
146 147 4.924305 AAGCTGAAACATTTTGAGAGCA 57.076 36.364 0.00 0.00 0.00 4.26
147 148 4.234530 AGCTGAAACATTTTGAGAGCAC 57.765 40.909 0.00 0.00 0.00 4.40
148 149 2.975851 GCTGAAACATTTTGAGAGCACG 59.024 45.455 0.00 0.00 0.00 5.34
149 150 3.548818 GCTGAAACATTTTGAGAGCACGT 60.549 43.478 0.00 0.00 0.00 4.49
150 151 4.601019 CTGAAACATTTTGAGAGCACGTT 58.399 39.130 0.00 0.00 0.00 3.99
151 152 4.992688 TGAAACATTTTGAGAGCACGTTT 58.007 34.783 0.00 0.00 0.00 3.60
152 153 5.406649 TGAAACATTTTGAGAGCACGTTTT 58.593 33.333 0.00 0.00 0.00 2.43
153 154 5.866633 TGAAACATTTTGAGAGCACGTTTTT 59.133 32.000 0.00 0.00 0.00 1.94
202 203 8.445275 AAATACAAACAGTTTTTGAAATCCCC 57.555 30.769 8.71 0.00 31.45 4.81
203 204 4.776349 ACAAACAGTTTTTGAAATCCCCC 58.224 39.130 8.71 0.00 33.83 5.40
204 205 4.226168 ACAAACAGTTTTTGAAATCCCCCA 59.774 37.500 8.71 0.00 33.83 4.96
205 206 5.189180 CAAACAGTTTTTGAAATCCCCCAA 58.811 37.500 0.00 0.00 0.00 4.12
206 207 5.443230 AACAGTTTTTGAAATCCCCCAAA 57.557 34.783 0.00 0.00 0.00 3.28
207 208 5.443230 ACAGTTTTTGAAATCCCCCAAAA 57.557 34.783 0.00 0.00 39.58 2.44
208 209 5.821097 ACAGTTTTTGAAATCCCCCAAAAA 58.179 33.333 0.00 0.00 44.81 1.94
209 210 6.430864 ACAGTTTTTGAAATCCCCCAAAAAT 58.569 32.000 13.68 4.06 46.88 1.82
210 211 6.894654 ACAGTTTTTGAAATCCCCCAAAAATT 59.105 30.769 13.68 8.65 46.88 1.82
211 212 7.201835 CAGTTTTTGAAATCCCCCAAAAATTG 58.798 34.615 15.79 15.79 46.88 2.32
212 213 7.122048 AGTTTTTGAAATCCCCCAAAAATTGA 58.878 30.769 13.68 0.00 46.88 2.57
213 214 7.617329 AGTTTTTGAAATCCCCCAAAAATTGAA 59.383 29.630 13.68 0.00 46.88 2.69
214 215 7.961326 TTTTGAAATCCCCCAAAAATTGAAA 57.039 28.000 0.00 0.00 38.74 2.69
215 216 7.961326 TTTGAAATCCCCCAAAAATTGAAAA 57.039 28.000 0.00 0.00 30.29 2.29
216 217 6.951062 TGAAATCCCCCAAAAATTGAAAAC 57.049 33.333 0.00 0.00 0.00 2.43
217 218 5.529060 TGAAATCCCCCAAAAATTGAAAACG 59.471 36.000 0.00 0.00 0.00 3.60
218 219 4.698201 ATCCCCCAAAAATTGAAAACGT 57.302 36.364 0.00 0.00 0.00 3.99
219 220 3.798202 TCCCCCAAAAATTGAAAACGTG 58.202 40.909 0.00 0.00 0.00 4.49
220 221 3.197983 TCCCCCAAAAATTGAAAACGTGT 59.802 39.130 0.00 0.00 0.00 4.49
221 222 3.942115 CCCCCAAAAATTGAAAACGTGTT 59.058 39.130 0.00 0.00 0.00 3.32
222 223 4.396478 CCCCCAAAAATTGAAAACGTGTTT 59.604 37.500 0.00 0.00 0.00 2.83
223 224 5.106118 CCCCCAAAAATTGAAAACGTGTTTT 60.106 36.000 10.29 10.29 44.59 2.43
224 225 6.382608 CCCCAAAAATTGAAAACGTGTTTTT 58.617 32.000 11.63 0.00 42.26 1.94
356 358 1.536284 GGTATCCCGACGAAGAAGCAG 60.536 57.143 0.00 0.00 0.00 4.24
390 393 4.778143 GGAGCCGGGCGACACAAT 62.778 66.667 14.39 0.00 0.00 2.71
394 397 0.814010 AGCCGGGCGACACAATAATC 60.814 55.000 14.39 0.00 0.00 1.75
414 417 0.890683 GGTGAGGATTGTTTGGCAGG 59.109 55.000 0.00 0.00 0.00 4.85
415 418 0.244721 GTGAGGATTGTTTGGCAGGC 59.755 55.000 0.00 0.00 0.00 4.85
416 419 0.899717 TGAGGATTGTTTGGCAGGCC 60.900 55.000 2.62 2.62 0.00 5.19
452 455 1.993369 GATTAGCACCTTGTGGCGGC 61.993 60.000 0.00 0.00 37.26 6.53
454 457 2.762969 TTAGCACCTTGTGGCGGCAT 62.763 55.000 17.19 0.00 38.81 4.40
460 463 0.817013 CCTTGTGGCGGCATAACATT 59.183 50.000 17.19 0.00 0.00 2.71
471 474 4.500477 GCGGCATAACATTTTGAGATTGAC 59.500 41.667 0.00 0.00 0.00 3.18
499 502 4.913345 TCGTCACATACACTTTTGTAGTCG 59.087 41.667 0.00 0.00 41.62 4.18
502 505 4.913345 TCACATACACTTTTGTAGTCGACG 59.087 41.667 10.46 0.00 41.62 5.12
503 506 4.913345 CACATACACTTTTGTAGTCGACGA 59.087 41.667 10.46 0.94 41.62 4.20
510 513 6.729282 CACTTTTGTAGTCGACGAAACGTCT 61.729 44.000 19.16 6.32 43.97 4.18
525 528 0.175989 CGTCTCCTCCTGCTAAACCC 59.824 60.000 0.00 0.00 0.00 4.11
526 529 1.574263 GTCTCCTCCTGCTAAACCCT 58.426 55.000 0.00 0.00 0.00 4.34
527 530 1.208293 GTCTCCTCCTGCTAAACCCTG 59.792 57.143 0.00 0.00 0.00 4.45
528 531 1.078823 TCTCCTCCTGCTAAACCCTGA 59.921 52.381 0.00 0.00 0.00 3.86
529 532 1.909302 CTCCTCCTGCTAAACCCTGAA 59.091 52.381 0.00 0.00 0.00 3.02
530 533 2.305927 CTCCTCCTGCTAAACCCTGAAA 59.694 50.000 0.00 0.00 0.00 2.69
638 655 7.759489 ACAAGGCAAATCATCAAAGTACTTA 57.241 32.000 8.92 0.00 0.00 2.24
649 666 9.855021 ATCATCAAAGTACTTAAAAATTTCGGG 57.145 29.630 8.92 0.00 0.00 5.14
652 669 7.650890 TCAAAGTACTTAAAAATTTCGGGGAC 58.349 34.615 8.92 0.00 0.00 4.46
699 716 9.133627 CATAAATAGAGTTGGTCACGAGATATG 57.866 37.037 0.00 0.00 0.00 1.78
713 730 0.193574 GATATGGGTCCCCTCCTCCA 59.806 60.000 5.13 0.00 36.94 3.86
746 782 3.319122 ACAGATTCTGCCAGAAAACAACC 59.681 43.478 11.81 0.00 37.82 3.77
801 837 2.283298 GCACCCACATGTCATAGACAG 58.717 52.381 0.00 1.52 46.04 3.51
833 869 1.672030 CACCTGCGTGGCATCTGAA 60.672 57.895 0.00 0.00 38.13 3.02
875 911 4.200283 CGGCAGTCTCGGCTCCTC 62.200 72.222 0.00 0.00 0.00 3.71
876 912 4.200283 GGCAGTCTCGGCTCCTCG 62.200 72.222 0.00 0.00 0.00 4.63
892 928 4.091453 TCCTCGCCAAAAATTTCGATTC 57.909 40.909 0.82 0.00 0.00 2.52
893 929 3.119637 TCCTCGCCAAAAATTTCGATTCC 60.120 43.478 0.82 0.00 0.00 3.01
894 930 3.179048 CTCGCCAAAAATTTCGATTCCC 58.821 45.455 0.82 0.00 0.00 3.97
895 931 2.558795 TCGCCAAAAATTTCGATTCCCA 59.441 40.909 0.00 0.00 0.00 4.37
896 932 2.923020 CGCCAAAAATTTCGATTCCCAG 59.077 45.455 0.00 0.00 0.00 4.45
897 933 3.613910 CGCCAAAAATTTCGATTCCCAGT 60.614 43.478 0.00 0.00 0.00 4.00
898 934 3.926527 GCCAAAAATTTCGATTCCCAGTC 59.073 43.478 0.00 0.00 0.00 3.51
1747 1791 5.303845 TCAACACATTCCACATCATTTTCCA 59.696 36.000 0.00 0.00 0.00 3.53
1760 1804 5.798125 TCATTTTCCAACCAATTGTGCTA 57.202 34.783 4.43 0.00 33.60 3.49
1764 1808 5.999205 TTTCCAACCAATTGTGCTATGAT 57.001 34.783 4.43 0.00 33.60 2.45
1809 1853 6.027749 CACCAATAGCCGTGAATACTTTTTC 58.972 40.000 0.00 0.00 31.36 2.29
2112 2209 1.603455 ACAGTTGGCGGTTGGATGG 60.603 57.895 0.00 0.00 0.00 3.51
2197 2294 5.856156 TCAAATGCTCATTTTGGTGTTCAT 58.144 33.333 5.19 0.00 38.84 2.57
2218 2315 4.694760 TCTATGTGGAGCTGTATGCATT 57.305 40.909 3.54 0.00 45.94 3.56
2246 2343 3.743396 CCTCGCCTATTTCACTCATAAGC 59.257 47.826 0.00 0.00 0.00 3.09
2298 2452 4.574013 GTCATCTTCCAGCTCCTATGTTTG 59.426 45.833 0.00 0.00 0.00 2.93
2327 2481 4.731773 GCAGCAAAAGATTGATAAGTCCGG 60.732 45.833 0.00 0.00 38.94 5.14
2331 2485 3.840124 AAGATTGATAAGTCCGGGTCC 57.160 47.619 0.00 0.00 0.00 4.46
2333 2487 0.106149 ATTGATAAGTCCGGGTCCGC 59.894 55.000 0.00 0.00 38.24 5.54
2336 2490 2.948840 GATAAGTCCGGGTCCGCGTG 62.949 65.000 4.92 0.00 38.24 5.34
2375 2529 7.761704 GCTGAGTCAGAATCTTGTACTGAATTA 59.238 37.037 24.55 0.00 41.31 1.40
2804 2974 8.855110 TCTTTTTGCTGATGGTTAACTATGAAA 58.145 29.630 9.44 1.04 0.00 2.69
3334 3518 2.391616 TCAAGTATGCAGTGCTCCAG 57.608 50.000 17.60 1.76 0.00 3.86
3451 3635 5.286082 GCATTACCACATCGTAAGCAAAAAG 59.714 40.000 0.00 0.00 31.96 2.27
3455 3654 5.897050 ACCACATCGTAAGCAAAAAGAAAA 58.103 33.333 0.00 0.00 37.18 2.29
3587 3786 5.768164 TGTTTTCTTCCCATTTAGTCCACTC 59.232 40.000 0.00 0.00 0.00 3.51
3593 3792 5.677319 TCCCATTTAGTCCACTCTACAAG 57.323 43.478 0.00 0.00 0.00 3.16
3612 3811 2.522185 AGTGAGTACTGCCTACCGAAA 58.478 47.619 0.00 0.00 35.34 3.46
3658 3857 4.934797 TCATCCAAAAGGACAAGGAGAT 57.065 40.909 0.00 0.00 32.91 2.75
3749 3948 8.953665 AGGAATCTTGTAGGAATTTCATAGGAT 58.046 33.333 0.00 0.00 0.00 3.24
3771 4002 3.815507 AGGATCCTTTAGACCCCTTTGA 58.184 45.455 9.02 0.00 29.04 2.69
3856 4088 8.831550 GGAAAATAAACATTAGGCTAGACTCAG 58.168 37.037 0.00 0.00 0.00 3.35
3858 4090 8.723942 AAATAAACATTAGGCTAGACTCAGTG 57.276 34.615 0.00 1.92 0.00 3.66
3890 4122 2.079170 TGATGTGAACCAAAGGGCAA 57.921 45.000 0.00 0.00 37.90 4.52
4001 4233 9.722056 CCTAATATGCTTGTGAAATACTGAAAC 57.278 33.333 0.00 0.00 0.00 2.78
4051 4283 3.446161 AGAGTCCGATCGATTAACACCAA 59.554 43.478 18.66 0.00 0.00 3.67
4072 4304 9.150348 CACCAAATAGTTTTTGACTTCTTGTTT 57.850 29.630 7.53 0.00 39.86 2.83
4206 4443 6.070656 TCAGGATCAACTTCAACCTCATTTT 58.929 36.000 0.00 0.00 0.00 1.82
4257 4494 5.751243 ACTGCTACACGTTTTCTTTTCAT 57.249 34.783 0.00 0.00 0.00 2.57
4270 4507 5.695851 TTCTTTTCATTCTCCTGCTTGTC 57.304 39.130 0.00 0.00 0.00 3.18
4274 4511 1.280133 TCATTCTCCTGCTTGTCCTGG 59.720 52.381 0.00 0.00 0.00 4.45
4275 4512 0.622665 ATTCTCCTGCTTGTCCTGGG 59.377 55.000 0.00 0.00 0.00 4.45
4277 4514 2.853542 TCCTGCTTGTCCTGGGCA 60.854 61.111 0.00 0.00 34.66 5.36
4485 4722 3.077556 GGAAGCCTCTCGCCCTCA 61.078 66.667 0.00 0.00 38.78 3.86
4559 4796 6.057533 TGCATATGTGAATTCTTCTGTAGGG 58.942 40.000 7.05 0.00 0.00 3.53
4613 4850 1.910772 CATTTGGGCCCGGTGGAAA 60.911 57.895 19.37 12.27 0.00 3.13
4650 4887 2.653726 TCTAGCTCCTCTCTTGCTCAG 58.346 52.381 0.00 0.00 38.15 3.35
4651 4888 2.025416 TCTAGCTCCTCTCTTGCTCAGT 60.025 50.000 0.00 0.00 38.15 3.41
4678 4916 4.986659 TCTAACTACGTTTGGAGTTTCAGC 59.013 41.667 6.75 0.00 37.16 4.26
4712 4950 4.836125 TTTTTACAGGCTTGCTTCTCTG 57.164 40.909 0.00 0.00 0.00 3.35
4714 4952 0.686789 TACAGGCTTGCTTCTCTGCA 59.313 50.000 0.00 0.00 41.65 4.41
4723 4961 2.746269 TGCTTCTCTGCAAAATTGTGC 58.254 42.857 14.03 14.03 45.15 4.57
4724 4962 2.363038 TGCTTCTCTGCAAAATTGTGCT 59.637 40.909 21.05 0.00 45.17 4.40
4725 4963 2.729882 GCTTCTCTGCAAAATTGTGCTG 59.270 45.455 21.05 19.83 45.17 4.41
4726 4964 3.797865 GCTTCTCTGCAAAATTGTGCTGT 60.798 43.478 21.05 0.00 45.17 4.40
4738 4976 4.627611 ATTGTGCTGTATCTGTTGCATC 57.372 40.909 0.00 0.00 37.76 3.91
4739 4977 2.358957 TGTGCTGTATCTGTTGCATCC 58.641 47.619 0.00 0.00 37.76 3.51
4763 5001 4.248859 AGTTTGTGGTTCATCAGATCTCG 58.751 43.478 0.00 0.00 0.00 4.04
4777 5015 6.561737 TCAGATCTCGGTCAACATATCTAC 57.438 41.667 0.00 0.00 0.00 2.59
4780 5018 6.147328 CAGATCTCGGTCAACATATCTACGTA 59.853 42.308 0.00 0.00 0.00 3.57
4784 5022 4.577693 TCGGTCAACATATCTACGTAGCTT 59.422 41.667 18.00 10.04 0.00 3.74
4785 5023 4.675565 CGGTCAACATATCTACGTAGCTTG 59.324 45.833 18.00 15.59 0.00 4.01
4786 5024 4.982916 GGTCAACATATCTACGTAGCTTGG 59.017 45.833 18.00 9.68 0.00 3.61
4787 5025 5.451520 GGTCAACATATCTACGTAGCTTGGT 60.452 44.000 18.00 10.35 0.00 3.67
4788 5026 6.238842 GGTCAACATATCTACGTAGCTTGGTA 60.239 42.308 18.00 0.00 0.00 3.25
4789 5027 6.856938 GTCAACATATCTACGTAGCTTGGTAG 59.143 42.308 18.00 14.50 37.94 3.18
4791 5029 7.716560 TCAACATATCTACGTAGCTTGGTAGTA 59.283 37.037 18.00 12.45 37.84 1.82
4792 5030 7.432350 ACATATCTACGTAGCTTGGTAGTAC 57.568 40.000 18.00 0.00 37.84 2.73
4793 5031 6.994496 ACATATCTACGTAGCTTGGTAGTACA 59.006 38.462 18.00 0.00 37.84 2.90
4794 5032 7.500227 ACATATCTACGTAGCTTGGTAGTACAA 59.500 37.037 18.00 0.00 37.84 2.41
4795 5033 6.956202 ATCTACGTAGCTTGGTAGTACAAT 57.044 37.500 18.00 0.00 37.84 2.71
4796 5034 6.764308 TCTACGTAGCTTGGTAGTACAATT 57.236 37.500 18.00 0.00 37.84 2.32
4797 5035 7.161773 TCTACGTAGCTTGGTAGTACAATTT 57.838 36.000 18.00 0.00 37.84 1.82
4798 5036 7.253422 TCTACGTAGCTTGGTAGTACAATTTC 58.747 38.462 18.00 0.00 37.84 2.17
4799 5037 5.173664 ACGTAGCTTGGTAGTACAATTTCC 58.826 41.667 2.06 0.00 0.00 3.13
4800 5038 4.569564 CGTAGCTTGGTAGTACAATTTCCC 59.430 45.833 2.06 0.00 0.00 3.97
4825 5063 4.625311 CCGAAACCAAACTCATTAAATGGC 59.375 41.667 0.00 0.00 34.45 4.40
4843 5081 6.765915 AATGGCAGAAGAAATAAGGAAGAC 57.234 37.500 0.00 0.00 0.00 3.01
4848 5086 6.207614 GGCAGAAGAAATAAGGAAGACAACTT 59.792 38.462 0.00 0.00 39.24 2.66
4850 5088 8.784043 GCAGAAGAAATAAGGAAGACAACTTAA 58.216 33.333 0.00 0.00 36.39 1.85
4910 5149 6.817765 AAAAGAAGACAAGTCAAGTTCACA 57.182 33.333 2.72 0.00 0.00 3.58
4911 5150 6.428385 AAAGAAGACAAGTCAAGTTCACAG 57.572 37.500 2.72 0.00 0.00 3.66
4912 5151 4.446371 AGAAGACAAGTCAAGTTCACAGG 58.554 43.478 2.72 0.00 0.00 4.00
4913 5152 3.199880 AGACAAGTCAAGTTCACAGGG 57.800 47.619 2.72 0.00 0.00 4.45
4914 5153 2.771943 AGACAAGTCAAGTTCACAGGGA 59.228 45.455 2.72 0.00 0.00 4.20
4915 5154 3.134458 GACAAGTCAAGTTCACAGGGAG 58.866 50.000 0.00 0.00 0.00 4.30
4916 5155 1.876156 CAAGTCAAGTTCACAGGGAGC 59.124 52.381 0.00 0.00 0.00 4.70
4917 5156 1.131638 AGTCAAGTTCACAGGGAGCA 58.868 50.000 0.00 0.00 0.00 4.26
4918 5157 1.701847 AGTCAAGTTCACAGGGAGCAT 59.298 47.619 0.00 0.00 0.00 3.79
4919 5158 2.079925 GTCAAGTTCACAGGGAGCATC 58.920 52.381 0.00 0.00 0.00 3.91
4920 5159 1.980765 TCAAGTTCACAGGGAGCATCT 59.019 47.619 0.00 0.00 33.73 2.90
4921 5160 3.055819 GTCAAGTTCACAGGGAGCATCTA 60.056 47.826 0.00 0.00 33.73 1.98
4922 5161 3.776969 TCAAGTTCACAGGGAGCATCTAT 59.223 43.478 0.00 0.00 33.73 1.98
4923 5162 4.962362 TCAAGTTCACAGGGAGCATCTATA 59.038 41.667 0.00 0.00 33.73 1.31
4924 5163 5.604231 TCAAGTTCACAGGGAGCATCTATAT 59.396 40.000 0.00 0.00 33.73 0.86
4925 5164 5.480642 AGTTCACAGGGAGCATCTATATG 57.519 43.478 0.00 0.00 36.09 1.78
4926 5165 5.150715 AGTTCACAGGGAGCATCTATATGA 58.849 41.667 0.00 0.00 34.84 2.15
4927 5166 5.245751 AGTTCACAGGGAGCATCTATATGAG 59.754 44.000 0.00 0.00 34.84 2.90
4928 5167 5.003096 TCACAGGGAGCATCTATATGAGA 57.997 43.478 0.00 0.00 39.01 3.27
4929 5168 4.769488 TCACAGGGAGCATCTATATGAGAC 59.231 45.833 0.00 0.00 36.87 3.36
4930 5169 4.081752 CACAGGGAGCATCTATATGAGACC 60.082 50.000 0.00 0.00 36.87 3.85
4931 5170 4.202770 ACAGGGAGCATCTATATGAGACCT 60.203 45.833 0.00 0.00 36.87 3.85
4932 5171 4.402155 CAGGGAGCATCTATATGAGACCTC 59.598 50.000 0.00 0.00 36.87 3.85
4933 5172 3.704061 GGGAGCATCTATATGAGACCTCC 59.296 52.174 13.99 13.99 46.26 4.30
4934 5173 4.571792 GGGAGCATCTATATGAGACCTCCT 60.572 50.000 18.04 0.00 46.24 3.69
4935 5174 5.340444 GGGAGCATCTATATGAGACCTCCTA 60.340 48.000 18.04 0.00 46.24 2.94
4936 5175 6.372931 GGAGCATCTATATGAGACCTCCTAT 58.627 44.000 14.57 0.00 44.93 2.57
4937 5176 6.265196 GGAGCATCTATATGAGACCTCCTATG 59.735 46.154 14.57 0.00 44.93 2.23
4938 5177 6.740693 AGCATCTATATGAGACCTCCTATGT 58.259 40.000 5.46 0.00 36.87 2.29
4939 5178 6.606796 AGCATCTATATGAGACCTCCTATGTG 59.393 42.308 5.46 3.94 36.87 3.21
4940 5179 6.605194 GCATCTATATGAGACCTCCTATGTGA 59.395 42.308 5.46 4.70 36.87 3.58
4941 5180 7.416213 GCATCTATATGAGACCTCCTATGTGAC 60.416 44.444 5.46 0.00 36.87 3.67
4942 5181 6.174049 TCTATATGAGACCTCCTATGTGACG 58.826 44.000 5.46 0.00 0.00 4.35
4943 5182 2.509166 TGAGACCTCCTATGTGACGT 57.491 50.000 0.00 0.00 0.00 4.34
4944 5183 2.092323 TGAGACCTCCTATGTGACGTG 58.908 52.381 0.00 0.00 0.00 4.49
4945 5184 2.093106 GAGACCTCCTATGTGACGTGT 58.907 52.381 0.00 0.00 0.00 4.49
4946 5185 2.492484 GAGACCTCCTATGTGACGTGTT 59.508 50.000 0.00 0.00 0.00 3.32
4947 5186 2.897969 AGACCTCCTATGTGACGTGTTT 59.102 45.455 0.00 0.00 0.00 2.83
4948 5187 3.323979 AGACCTCCTATGTGACGTGTTTT 59.676 43.478 0.00 0.00 0.00 2.43
4949 5188 3.399330 ACCTCCTATGTGACGTGTTTTG 58.601 45.455 0.00 0.00 0.00 2.44
4950 5189 2.159627 CCTCCTATGTGACGTGTTTTGC 59.840 50.000 0.00 0.00 0.00 3.68
4951 5190 1.795872 TCCTATGTGACGTGTTTTGCG 59.204 47.619 0.00 0.00 0.00 4.85
4952 5191 1.529438 CCTATGTGACGTGTTTTGCGT 59.471 47.619 0.00 0.00 45.86 5.24
4961 5200 3.868835 ACGTGTTTTGCGTCAAATAGAC 58.131 40.909 5.97 3.37 44.02 2.59
4970 5209 2.875080 GTCAAATAGACGCGCAAACT 57.125 45.000 5.73 5.68 37.53 2.66
4971 5210 2.495939 GTCAAATAGACGCGCAAACTG 58.504 47.619 5.73 0.00 37.53 3.16
4972 5211 2.096417 GTCAAATAGACGCGCAAACTGT 60.096 45.455 5.73 0.00 37.53 3.55
4973 5212 3.122278 GTCAAATAGACGCGCAAACTGTA 59.878 43.478 5.73 0.00 37.53 2.74
4974 5213 3.122278 TCAAATAGACGCGCAAACTGTAC 59.878 43.478 5.73 0.00 0.00 2.90
4975 5214 1.636988 ATAGACGCGCAAACTGTACC 58.363 50.000 5.73 0.00 0.00 3.34
4976 5215 0.730155 TAGACGCGCAAACTGTACCG 60.730 55.000 5.73 0.00 0.00 4.02
4977 5216 2.017783 GACGCGCAAACTGTACCGA 61.018 57.895 5.73 0.00 0.00 4.69
4978 5217 2.206825 GACGCGCAAACTGTACCGAC 62.207 60.000 5.73 0.00 0.00 4.79
4979 5218 2.019951 CGCGCAAACTGTACCGACT 61.020 57.895 8.75 0.00 0.00 4.18
4980 5219 1.491563 GCGCAAACTGTACCGACTG 59.508 57.895 0.30 0.00 0.00 3.51
4981 5220 0.942410 GCGCAAACTGTACCGACTGA 60.942 55.000 0.30 0.00 0.00 3.41
4982 5221 0.782384 CGCAAACTGTACCGACTGAC 59.218 55.000 0.00 0.00 0.00 3.51
4983 5222 1.145803 GCAAACTGTACCGACTGACC 58.854 55.000 0.00 0.00 0.00 4.02
4984 5223 1.792006 CAAACTGTACCGACTGACCC 58.208 55.000 0.00 0.00 0.00 4.46
4985 5224 1.069513 CAAACTGTACCGACTGACCCA 59.930 52.381 0.00 0.00 0.00 4.51
4986 5225 0.966920 AACTGTACCGACTGACCCAG 59.033 55.000 0.00 0.00 37.52 4.45
4987 5226 1.215647 CTGTACCGACTGACCCAGC 59.784 63.158 0.00 0.00 34.37 4.85
4988 5227 1.228769 TGTACCGACTGACCCAGCT 60.229 57.895 0.00 0.00 34.37 4.24
4989 5228 0.038599 TGTACCGACTGACCCAGCTA 59.961 55.000 0.00 0.00 34.37 3.32
4990 5229 0.455005 GTACCGACTGACCCAGCTAC 59.545 60.000 0.00 0.00 34.37 3.58
4991 5230 0.330604 TACCGACTGACCCAGCTACT 59.669 55.000 0.00 0.00 34.37 2.57
4992 5231 1.251527 ACCGACTGACCCAGCTACTG 61.252 60.000 0.00 0.00 34.37 2.74
4993 5232 1.251527 CCGACTGACCCAGCTACTGT 61.252 60.000 0.00 0.00 34.37 3.55
4994 5233 1.460504 CGACTGACCCAGCTACTGTA 58.539 55.000 0.00 0.00 34.37 2.74
4995 5234 1.402259 CGACTGACCCAGCTACTGTAG 59.598 57.143 10.48 10.48 34.37 2.74
5060 5299 3.629142 AAAACTACTCCAGGGATTCGG 57.371 47.619 0.00 0.00 0.00 4.30
5061 5300 0.831307 AACTACTCCAGGGATTCGGC 59.169 55.000 0.00 0.00 0.00 5.54
5062 5301 0.032017 ACTACTCCAGGGATTCGGCT 60.032 55.000 0.00 0.00 0.00 5.52
5063 5302 1.217183 ACTACTCCAGGGATTCGGCTA 59.783 52.381 0.00 0.00 0.00 3.93
5064 5303 2.158295 ACTACTCCAGGGATTCGGCTAT 60.158 50.000 0.00 0.00 0.00 2.97
5065 5304 1.807814 ACTCCAGGGATTCGGCTATT 58.192 50.000 0.00 0.00 0.00 1.73
5066 5305 1.417890 ACTCCAGGGATTCGGCTATTG 59.582 52.381 0.00 0.00 0.00 1.90
5067 5306 1.417890 CTCCAGGGATTCGGCTATTGT 59.582 52.381 0.00 0.00 0.00 2.71
5068 5307 2.632996 CTCCAGGGATTCGGCTATTGTA 59.367 50.000 0.00 0.00 0.00 2.41
5069 5308 2.632996 TCCAGGGATTCGGCTATTGTAG 59.367 50.000 0.00 0.00 0.00 2.74
5070 5309 2.368875 CCAGGGATTCGGCTATTGTAGT 59.631 50.000 0.00 0.00 0.00 2.73
5071 5310 3.393800 CAGGGATTCGGCTATTGTAGTG 58.606 50.000 0.00 0.00 0.00 2.74
5072 5311 2.143925 GGGATTCGGCTATTGTAGTGC 58.856 52.381 0.00 0.00 0.00 4.40
5073 5312 2.143925 GGATTCGGCTATTGTAGTGCC 58.856 52.381 0.00 0.00 42.94 5.01
5074 5313 2.224305 GGATTCGGCTATTGTAGTGCCT 60.224 50.000 0.00 0.00 44.09 4.75
5075 5314 2.309528 TTCGGCTATTGTAGTGCCTG 57.690 50.000 0.00 0.00 44.09 4.85
5076 5315 0.464036 TCGGCTATTGTAGTGCCTGG 59.536 55.000 0.00 0.00 44.09 4.45
5077 5316 0.464036 CGGCTATTGTAGTGCCTGGA 59.536 55.000 0.00 0.00 44.09 3.86
5078 5317 1.539065 CGGCTATTGTAGTGCCTGGAG 60.539 57.143 0.00 0.00 44.09 3.86
5079 5318 1.202698 GGCTATTGTAGTGCCTGGAGG 60.203 57.143 0.00 0.00 43.05 4.30
5080 5319 1.202698 GCTATTGTAGTGCCTGGAGGG 60.203 57.143 0.00 0.00 35.18 4.30
5089 5328 4.136978 CCTGGAGGGCACTGTAGT 57.863 61.111 0.00 0.00 0.00 2.73
5101 5340 2.814280 ACTGTAGTGAAACGGACCTG 57.186 50.000 0.00 0.00 45.86 4.00
5102 5341 2.037144 ACTGTAGTGAAACGGACCTGT 58.963 47.619 0.00 0.00 45.86 4.00
5103 5342 3.225104 ACTGTAGTGAAACGGACCTGTA 58.775 45.455 0.00 0.00 45.86 2.74
5104 5343 3.255149 ACTGTAGTGAAACGGACCTGTAG 59.745 47.826 0.00 0.00 45.86 2.74
5105 5344 2.029649 TGTAGTGAAACGGACCTGTAGC 60.030 50.000 0.00 0.00 45.86 3.58
5106 5345 1.339097 AGTGAAACGGACCTGTAGCT 58.661 50.000 0.00 0.00 45.86 3.32
5107 5346 2.522185 AGTGAAACGGACCTGTAGCTA 58.478 47.619 0.00 0.00 45.86 3.32
5108 5347 2.492484 AGTGAAACGGACCTGTAGCTAG 59.508 50.000 0.00 0.00 45.86 3.42
5109 5348 1.203994 TGAAACGGACCTGTAGCTAGC 59.796 52.381 6.62 6.62 0.00 3.42
5110 5349 1.477295 GAAACGGACCTGTAGCTAGCT 59.523 52.381 23.12 23.12 0.00 3.32
5111 5350 0.818296 AACGGACCTGTAGCTAGCTG 59.182 55.000 27.68 12.81 0.00 4.24
5112 5351 1.038130 ACGGACCTGTAGCTAGCTGG 61.038 60.000 27.68 21.35 0.00 4.85
5113 5352 1.038130 CGGACCTGTAGCTAGCTGGT 61.038 60.000 27.68 24.45 40.19 4.00
5114 5353 1.196012 GGACCTGTAGCTAGCTGGTT 58.804 55.000 27.68 10.36 38.11 3.67
5115 5354 1.137282 GGACCTGTAGCTAGCTGGTTC 59.863 57.143 27.68 20.00 38.11 3.62
5116 5355 1.825474 GACCTGTAGCTAGCTGGTTCA 59.175 52.381 27.68 17.75 38.11 3.18
5117 5356 1.550976 ACCTGTAGCTAGCTGGTTCAC 59.449 52.381 27.68 16.89 35.11 3.18
5118 5357 1.827969 CCTGTAGCTAGCTGGTTCACT 59.172 52.381 27.68 0.22 0.00 3.41
5119 5358 3.024547 CCTGTAGCTAGCTGGTTCACTA 58.975 50.000 27.68 0.85 0.00 2.74
5120 5359 3.067461 CCTGTAGCTAGCTGGTTCACTAG 59.933 52.174 27.68 14.77 39.13 2.57
5121 5360 3.024547 TGTAGCTAGCTGGTTCACTAGG 58.975 50.000 27.68 0.00 37.05 3.02
5122 5361 1.490574 AGCTAGCTGGTTCACTAGGG 58.509 55.000 18.57 0.00 37.05 3.53
5123 5362 1.196012 GCTAGCTGGTTCACTAGGGT 58.804 55.000 7.70 0.00 37.05 4.34
5124 5363 1.134670 GCTAGCTGGTTCACTAGGGTG 60.135 57.143 7.70 0.00 44.23 4.61
5139 5378 8.528044 TCACTAGGGTGATTTTACTTTTTGTT 57.472 30.769 0.00 0.00 46.19 2.83
5140 5379 9.629878 TCACTAGGGTGATTTTACTTTTTGTTA 57.370 29.630 0.00 0.00 46.19 2.41
5229 5468 9.917129 ATTGGGAACTATTTTTAAAACCGTAAG 57.083 29.630 0.00 0.00 0.00 2.34
5248 5487 7.566858 CGTAAGGTTTCATGAAAATTTCCAG 57.433 36.000 22.07 8.09 31.33 3.86
5249 5488 7.145323 CGTAAGGTTTCATGAAAATTTCCAGT 58.855 34.615 22.07 12.81 31.33 4.00
5250 5489 7.326063 CGTAAGGTTTCATGAAAATTTCCAGTC 59.674 37.037 22.07 6.76 31.33 3.51
5251 5490 6.729690 AGGTTTCATGAAAATTTCCAGTCA 57.270 33.333 22.07 0.00 31.33 3.41
5252 5491 7.307131 AGGTTTCATGAAAATTTCCAGTCAT 57.693 32.000 22.07 1.99 31.33 3.06
5253 5492 8.421249 AGGTTTCATGAAAATTTCCAGTCATA 57.579 30.769 22.07 0.00 31.33 2.15
5254 5493 9.039165 AGGTTTCATGAAAATTTCCAGTCATAT 57.961 29.630 22.07 0.00 31.33 1.78
5255 5494 9.657419 GGTTTCATGAAAATTTCCAGTCATATT 57.343 29.630 22.07 0.00 31.33 1.28
5285 5524 9.540431 AATTTTTGAACAAATCTTGAAAACGTG 57.460 25.926 0.00 0.00 0.00 4.49
5286 5525 7.875316 TTTTGAACAAATCTTGAAAACGTGA 57.125 28.000 0.00 0.00 0.00 4.35
5287 5526 7.875316 TTTGAACAAATCTTGAAAACGTGAA 57.125 28.000 0.00 0.00 0.00 3.18
5288 5527 7.875316 TTGAACAAATCTTGAAAACGTGAAA 57.125 28.000 0.00 0.00 0.00 2.69
5289 5528 7.875316 TGAACAAATCTTGAAAACGTGAAAA 57.125 28.000 0.00 0.00 0.00 2.29
5290 5529 8.472683 TGAACAAATCTTGAAAACGTGAAAAT 57.527 26.923 0.00 0.00 0.00 1.82
5291 5530 8.930760 TGAACAAATCTTGAAAACGTGAAAATT 58.069 25.926 0.00 0.00 0.00 1.82
5292 5531 9.753669 GAACAAATCTTGAAAACGTGAAAATTT 57.246 25.926 0.00 0.00 0.00 1.82
5356 5595 9.753669 AATTTTGAACTTTTTCGAAACATGAAC 57.246 25.926 10.79 2.07 44.47 3.18
5357 5596 8.527567 TTTTGAACTTTTTCGAAACATGAACT 57.472 26.923 10.79 0.00 39.33 3.01
5358 5597 8.527567 TTTGAACTTTTTCGAAACATGAACTT 57.472 26.923 10.79 0.00 32.92 2.66
5359 5598 8.527567 TTGAACTTTTTCGAAACATGAACTTT 57.472 26.923 10.79 0.00 34.04 2.66
5360 5599 8.527567 TGAACTTTTTCGAAACATGAACTTTT 57.472 26.923 10.79 0.00 34.04 2.27
5361 5600 8.983724 TGAACTTTTTCGAAACATGAACTTTTT 58.016 25.926 10.79 0.00 34.04 1.94
5397 5636 8.586570 AGCATAATCGTTTTTGAAATTTGTGA 57.413 26.923 0.00 0.00 0.00 3.58
5398 5637 9.039870 AGCATAATCGTTTTTGAAATTTGTGAA 57.960 25.926 0.00 0.00 0.00 3.18
5399 5638 9.091255 GCATAATCGTTTTTGAAATTTGTGAAC 57.909 29.630 0.00 0.00 0.00 3.18
5416 5655 9.743057 ATTTGTGAACATTTATTGAAAACGAGA 57.257 25.926 0.00 0.00 0.00 4.04
5417 5656 9.574458 TTTGTGAACATTTATTGAAAACGAGAA 57.426 25.926 0.00 0.00 0.00 2.87
5418 5657 8.555166 TGTGAACATTTATTGAAAACGAGAAC 57.445 30.769 0.00 0.00 0.00 3.01
5419 5658 8.184848 TGTGAACATTTATTGAAAACGAGAACA 58.815 29.630 0.00 0.00 0.00 3.18
5420 5659 9.180678 GTGAACATTTATTGAAAACGAGAACAT 57.819 29.630 0.00 0.00 0.00 2.71
5421 5660 9.743057 TGAACATTTATTGAAAACGAGAACATT 57.257 25.926 0.00 0.00 0.00 2.71
5468 5707 8.947055 AACAAGCATTTCTCATAAAGTTTGTT 57.053 26.923 0.00 0.00 32.17 2.83
5469 5708 8.579682 ACAAGCATTTCTCATAAAGTTTGTTC 57.420 30.769 0.00 0.00 0.00 3.18
5470 5709 8.196771 ACAAGCATTTCTCATAAAGTTTGTTCA 58.803 29.630 0.00 0.00 0.00 3.18
5471 5710 9.199982 CAAGCATTTCTCATAAAGTTTGTTCAT 57.800 29.630 0.00 0.00 0.00 2.57
5472 5711 9.768662 AAGCATTTCTCATAAAGTTTGTTCATT 57.231 25.926 0.00 0.00 0.00 2.57
5473 5712 9.199982 AGCATTTCTCATAAAGTTTGTTCATTG 57.800 29.630 0.00 0.00 0.00 2.82
5474 5713 9.195411 GCATTTCTCATAAAGTTTGTTCATTGA 57.805 29.630 0.00 0.00 0.00 2.57
5527 5766 8.771920 AAATAATAAGGAAAAGGAAAAAGCGG 57.228 30.769 0.00 0.00 0.00 5.52
5528 5767 7.712204 ATAATAAGGAAAAGGAAAAAGCGGA 57.288 32.000 0.00 0.00 0.00 5.54
5529 5768 6.413783 AATAAGGAAAAGGAAAAAGCGGAA 57.586 33.333 0.00 0.00 0.00 4.30
5530 5769 4.746535 AAGGAAAAGGAAAAAGCGGAAA 57.253 36.364 0.00 0.00 0.00 3.13
5531 5770 4.322080 AGGAAAAGGAAAAAGCGGAAAG 57.678 40.909 0.00 0.00 0.00 2.62
5532 5771 3.958147 AGGAAAAGGAAAAAGCGGAAAGA 59.042 39.130 0.00 0.00 0.00 2.52
5533 5772 4.404394 AGGAAAAGGAAAAAGCGGAAAGAA 59.596 37.500 0.00 0.00 0.00 2.52
5534 5773 5.105106 AGGAAAAGGAAAAAGCGGAAAGAAA 60.105 36.000 0.00 0.00 0.00 2.52
5535 5774 5.583061 GGAAAAGGAAAAAGCGGAAAGAAAA 59.417 36.000 0.00 0.00 0.00 2.29
5536 5775 6.260050 GGAAAAGGAAAAAGCGGAAAGAAAAT 59.740 34.615 0.00 0.00 0.00 1.82
5537 5776 6.844696 AAAGGAAAAAGCGGAAAGAAAATC 57.155 33.333 0.00 0.00 0.00 2.17
5538 5777 5.529581 AGGAAAAAGCGGAAAGAAAATCA 57.470 34.783 0.00 0.00 0.00 2.57
5539 5778 5.289595 AGGAAAAAGCGGAAAGAAAATCAC 58.710 37.500 0.00 0.00 0.00 3.06
5540 5779 5.047188 GGAAAAAGCGGAAAGAAAATCACA 58.953 37.500 0.00 0.00 0.00 3.58
5541 5780 5.522097 GGAAAAAGCGGAAAGAAAATCACAA 59.478 36.000 0.00 0.00 0.00 3.33
5542 5781 6.036626 GGAAAAAGCGGAAAGAAAATCACAAA 59.963 34.615 0.00 0.00 0.00 2.83
5543 5782 6.976636 AAAAGCGGAAAGAAAATCACAAAA 57.023 29.167 0.00 0.00 0.00 2.44
5544 5783 6.976636 AAAGCGGAAAGAAAATCACAAAAA 57.023 29.167 0.00 0.00 0.00 1.94
5545 5784 5.966636 AGCGGAAAGAAAATCACAAAAAC 57.033 34.783 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 9.461312 AGCTTTAAAAAGTTGGAATTTCCTTTT 57.539 25.926 16.25 15.00 38.42 2.27
104 105 8.892723 CAGCTTTAAAAAGTTGGAATTTCCTTT 58.107 29.630 16.25 10.13 41.66 3.11
105 106 8.264347 TCAGCTTTAAAAAGTTGGAATTTCCTT 58.736 29.630 16.25 4.11 44.32 3.36
106 107 7.791029 TCAGCTTTAAAAAGTTGGAATTTCCT 58.209 30.769 16.25 0.00 44.32 3.36
107 108 8.432110 TTCAGCTTTAAAAAGTTGGAATTTCC 57.568 30.769 16.19 8.59 44.32 3.13
108 109 9.702726 GTTTCAGCTTTAAAAAGTTGGAATTTC 57.297 29.630 13.89 1.65 43.54 2.17
109 110 9.225436 TGTTTCAGCTTTAAAAAGTTGGAATTT 57.775 25.926 13.89 0.00 43.54 1.82
110 111 8.785329 TGTTTCAGCTTTAAAAAGTTGGAATT 57.215 26.923 13.89 0.00 43.54 2.17
111 112 8.962884 ATGTTTCAGCTTTAAAAAGTTGGAAT 57.037 26.923 13.89 0.22 43.54 3.01
112 113 8.785329 AATGTTTCAGCTTTAAAAAGTTGGAA 57.215 26.923 16.19 12.46 44.32 3.53
113 114 8.785329 AAATGTTTCAGCTTTAAAAAGTTGGA 57.215 26.923 16.19 7.62 44.32 3.53
114 115 9.276397 CAAAATGTTTCAGCTTTAAAAAGTTGG 57.724 29.630 16.19 2.82 44.32 3.77
117 118 9.651913 TCTCAAAATGTTTCAGCTTTAAAAAGT 57.348 25.926 4.50 0.00 38.28 2.66
119 120 8.603181 GCTCTCAAAATGTTTCAGCTTTAAAAA 58.397 29.630 0.00 0.00 0.00 1.94
120 121 7.763528 TGCTCTCAAAATGTTTCAGCTTTAAAA 59.236 29.630 0.00 0.00 0.00 1.52
121 122 7.222611 GTGCTCTCAAAATGTTTCAGCTTTAAA 59.777 33.333 0.00 0.00 0.00 1.52
122 123 6.697019 GTGCTCTCAAAATGTTTCAGCTTTAA 59.303 34.615 0.00 0.00 0.00 1.52
123 124 6.208644 GTGCTCTCAAAATGTTTCAGCTTTA 58.791 36.000 0.00 0.00 0.00 1.85
124 125 5.045872 GTGCTCTCAAAATGTTTCAGCTTT 58.954 37.500 0.00 0.00 0.00 3.51
125 126 4.614946 GTGCTCTCAAAATGTTTCAGCTT 58.385 39.130 0.00 0.00 0.00 3.74
126 127 3.304257 CGTGCTCTCAAAATGTTTCAGCT 60.304 43.478 0.00 0.00 0.00 4.24
127 128 2.975851 CGTGCTCTCAAAATGTTTCAGC 59.024 45.455 0.00 0.00 0.00 4.26
128 129 4.214980 ACGTGCTCTCAAAATGTTTCAG 57.785 40.909 0.00 0.00 0.00 3.02
129 130 4.630894 AACGTGCTCTCAAAATGTTTCA 57.369 36.364 0.00 0.00 0.00 2.69
130 131 5.949233 AAAACGTGCTCTCAAAATGTTTC 57.051 34.783 0.00 0.00 0.00 2.78
176 177 8.898761 GGGGATTTCAAAAACTGTTTGTATTTT 58.101 29.630 6.53 0.00 0.00 1.82
177 178 7.500892 GGGGGATTTCAAAAACTGTTTGTATTT 59.499 33.333 6.53 0.00 0.00 1.40
178 179 6.995686 GGGGGATTTCAAAAACTGTTTGTATT 59.004 34.615 6.53 0.00 0.00 1.89
179 180 6.100424 TGGGGGATTTCAAAAACTGTTTGTAT 59.900 34.615 6.53 0.00 0.00 2.29
180 181 5.425539 TGGGGGATTTCAAAAACTGTTTGTA 59.574 36.000 6.53 0.00 0.00 2.41
181 182 4.226168 TGGGGGATTTCAAAAACTGTTTGT 59.774 37.500 6.53 0.00 0.00 2.83
182 183 4.775236 TGGGGGATTTCAAAAACTGTTTG 58.225 39.130 6.53 0.00 0.00 2.93
183 184 5.443230 TTGGGGGATTTCAAAAACTGTTT 57.557 34.783 0.00 0.00 0.00 2.83
184 185 5.443230 TTTGGGGGATTTCAAAAACTGTT 57.557 34.783 0.00 0.00 30.96 3.16
185 186 5.443230 TTTTGGGGGATTTCAAAAACTGT 57.557 34.783 0.00 0.00 39.13 3.55
190 191 7.961326 TTTCAATTTTTGGGGGATTTCAAAA 57.039 28.000 0.00 0.00 39.96 2.44
191 192 7.415653 CGTTTTCAATTTTTGGGGGATTTCAAA 60.416 33.333 0.00 0.00 0.00 2.69
192 193 6.038714 CGTTTTCAATTTTTGGGGGATTTCAA 59.961 34.615 0.00 0.00 0.00 2.69
193 194 5.529060 CGTTTTCAATTTTTGGGGGATTTCA 59.471 36.000 0.00 0.00 0.00 2.69
194 195 5.529430 ACGTTTTCAATTTTTGGGGGATTTC 59.471 36.000 0.00 0.00 0.00 2.17
195 196 5.298026 CACGTTTTCAATTTTTGGGGGATTT 59.702 36.000 0.00 0.00 0.00 2.17
196 197 4.819088 CACGTTTTCAATTTTTGGGGGATT 59.181 37.500 0.00 0.00 0.00 3.01
197 198 4.141597 ACACGTTTTCAATTTTTGGGGGAT 60.142 37.500 0.00 0.00 0.00 3.85
198 199 3.197983 ACACGTTTTCAATTTTTGGGGGA 59.802 39.130 0.00 0.00 0.00 4.81
199 200 3.536570 ACACGTTTTCAATTTTTGGGGG 58.463 40.909 0.00 0.00 0.00 5.40
200 201 5.553290 AAACACGTTTTCAATTTTTGGGG 57.447 34.783 0.00 0.00 0.00 4.96
241 242 9.267084 ACTTTTTAGTTTTTGAAAAGCTGTTCA 57.733 25.926 15.62 15.62 41.65 3.18
268 269 9.367160 TCTCCAATTTTCTCTTTCCTGTTTATT 57.633 29.630 0.00 0.00 0.00 1.40
281 282 8.716646 TTTTGGTTTTCTTCTCCAATTTTCTC 57.283 30.769 0.00 0.00 40.28 2.87
346 348 0.248498 CCATGCATGCTGCTTCTTCG 60.248 55.000 21.69 0.00 45.31 3.79
356 358 4.928140 CCCCTCCCCCATGCATGC 62.928 72.222 21.69 11.82 0.00 4.06
383 386 4.876107 ACAATCCTCACCGATTATTGTGTC 59.124 41.667 0.00 0.00 38.85 3.67
390 393 3.013921 GCCAAACAATCCTCACCGATTA 58.986 45.455 0.00 0.00 31.19 1.75
394 397 0.523072 CTGCCAAACAATCCTCACCG 59.477 55.000 0.00 0.00 0.00 4.94
415 418 4.463879 CAGCTGCCCGACCTCTGG 62.464 72.222 0.00 0.00 0.00 3.86
416 419 4.463879 CCAGCTGCCCGACCTCTG 62.464 72.222 8.66 0.00 0.00 3.35
452 455 7.423598 CGACTTCGTCAATCTCAAAATGTTATG 59.576 37.037 0.00 0.00 32.09 1.90
454 457 6.817396 CGACTTCGTCAATCTCAAAATGTTA 58.183 36.000 0.00 0.00 32.09 2.41
471 474 4.208460 ACAAAAGTGTATGTGACGACTTCG 59.792 41.667 0.00 0.00 40.04 3.79
484 487 4.437495 CGTTTCGTCGACTACAAAAGTGTA 59.563 41.667 14.70 0.00 39.07 2.90
487 490 3.438360 ACGTTTCGTCGACTACAAAAGT 58.562 40.909 14.70 13.88 36.82 2.66
502 505 2.994578 GTTTAGCAGGAGGAGACGTTTC 59.005 50.000 0.00 0.00 0.00 2.78
503 506 2.289506 GGTTTAGCAGGAGGAGACGTTT 60.290 50.000 0.00 0.00 0.00 3.60
510 513 2.038863 TTCAGGGTTTAGCAGGAGGA 57.961 50.000 0.00 0.00 0.00 3.71
525 528 4.884164 GGGGAGATGGTTACATTCTTTCAG 59.116 45.833 0.00 0.00 37.47 3.02
526 529 4.625324 CGGGGAGATGGTTACATTCTTTCA 60.625 45.833 0.00 0.00 37.47 2.69
527 530 3.877508 CGGGGAGATGGTTACATTCTTTC 59.122 47.826 0.00 0.00 37.47 2.62
528 531 3.886123 CGGGGAGATGGTTACATTCTTT 58.114 45.455 0.00 0.00 37.47 2.52
529 532 2.421529 GCGGGGAGATGGTTACATTCTT 60.422 50.000 0.00 0.00 37.47 2.52
530 533 1.141053 GCGGGGAGATGGTTACATTCT 59.859 52.381 0.00 0.00 37.47 2.40
560 577 6.707608 AGATGGTTGCATTCCTTTTTCTTTTC 59.292 34.615 9.35 0.00 0.00 2.29
561 578 6.594744 AGATGGTTGCATTCCTTTTTCTTTT 58.405 32.000 9.35 0.00 0.00 2.27
562 579 6.178607 AGATGGTTGCATTCCTTTTTCTTT 57.821 33.333 9.35 0.00 0.00 2.52
563 580 5.813513 AGATGGTTGCATTCCTTTTTCTT 57.186 34.783 9.35 0.00 0.00 2.52
577 594 3.992643 TCATTTGCCACAAAGATGGTTG 58.007 40.909 0.00 0.00 42.28 3.77
713 730 2.138320 CAGAATCTGTGTCTTGTGCGT 58.862 47.619 1.31 0.00 0.00 5.24
830 866 0.768221 AGAAGGGTGTGGAGGCTTCA 60.768 55.000 0.00 0.00 0.00 3.02
833 869 2.286523 CGAGAAGGGTGTGGAGGCT 61.287 63.158 0.00 0.00 0.00 4.58
875 911 2.923020 CTGGGAATCGAAATTTTTGGCG 59.077 45.455 0.00 0.00 0.00 5.69
876 912 3.925379 ACTGGGAATCGAAATTTTTGGC 58.075 40.909 0.00 0.00 0.00 4.52
892 928 2.666190 CACAGTGTGCGGACTGGG 60.666 66.667 10.97 10.60 46.56 4.45
964 1008 3.012722 TTAGGGTTGGGGCCTCGG 61.013 66.667 0.84 0.00 0.00 4.63
965 1009 2.590092 CTTAGGGTTGGGGCCTCG 59.410 66.667 0.84 0.00 0.00 4.63
1687 1731 0.861837 GGCAGCGTTAATCGATCCTG 59.138 55.000 0.00 2.30 42.86 3.86
1747 1791 7.682741 GCAGATAACATCATAGCACAATTGGTT 60.683 37.037 10.83 3.55 34.50 3.67
1760 1804 7.445096 TGAAATTACATCCGCAGATAACATCAT 59.555 33.333 0.00 0.00 0.00 2.45
1764 1808 5.295787 GGTGAAATTACATCCGCAGATAACA 59.704 40.000 0.00 0.00 0.00 2.41
1809 1853 3.369756 TGCAAGTATAAAACGGAGAAGCG 59.630 43.478 0.00 0.00 0.00 4.68
2069 2166 5.952064 GCAAATGACTGTCGTTTTAGTATCG 59.048 40.000 21.93 12.04 33.65 2.92
2112 2209 2.977914 TCTGAATAACCAGAGCACTGC 58.022 47.619 5.52 0.00 42.25 4.40
2197 2294 4.694760 AATGCATACAGCTCCACATAGA 57.305 40.909 0.00 0.00 45.94 1.98
2218 2315 5.984725 TGAGTGAAATAGGCGAGGAAAATA 58.015 37.500 0.00 0.00 0.00 1.40
2269 2366 4.036518 AGGAGCTGGAAGATGACTTATGT 58.963 43.478 0.00 0.00 36.39 2.29
2270 2367 4.686191 AGGAGCTGGAAGATGACTTATG 57.314 45.455 0.00 0.00 36.39 1.90
2298 2452 3.631145 TCAATCTTTTGCTGCACTGAC 57.369 42.857 0.00 0.00 32.61 3.51
2327 2481 1.852067 AATGAAGTTGCACGCGGACC 61.852 55.000 12.47 0.00 0.00 4.46
2331 2485 0.521242 GCCTAATGAAGTTGCACGCG 60.521 55.000 3.53 3.53 0.00 6.01
2333 2487 2.076100 TCAGCCTAATGAAGTTGCACG 58.924 47.619 0.00 0.00 0.00 5.34
2336 2490 3.338249 TGACTCAGCCTAATGAAGTTGC 58.662 45.455 0.00 0.00 0.00 4.17
2675 2845 9.177608 TCATCTTATTCCTGTGTTTTTCCTATG 57.822 33.333 0.00 0.00 0.00 2.23
2766 2936 7.389607 CCATCAGCAAAAAGAGGAAAATCAATT 59.610 33.333 0.00 0.00 0.00 2.32
3455 3654 7.573843 CGGAGAAGCTGAACAAAGATTATTTGT 60.574 37.037 3.62 3.62 43.72 2.83
3587 3786 3.181499 CGGTAGGCAGTACTCACTTGTAG 60.181 52.174 0.00 0.00 30.46 2.74
3593 3792 2.991866 GTTTTCGGTAGGCAGTACTCAC 59.008 50.000 0.00 0.00 0.00 3.51
3597 3796 3.036075 ACAGTTTTCGGTAGGCAGTAC 57.964 47.619 0.00 0.00 0.00 2.73
3658 3857 9.142515 GTTTCAATATCAATGCATTTTCACTCA 57.857 29.630 9.83 0.00 0.00 3.41
3749 3948 4.967871 TCAAAGGGGTCTAAAGGATCCTA 58.032 43.478 16.55 0.00 44.50 2.94
4001 4233 0.597568 TTGATGCGGCTTGGTTCAAG 59.402 50.000 0.00 3.50 43.57 3.02
4072 4304 8.131847 TGATTTTCCATTGTTCAATGTATCCA 57.868 30.769 19.63 9.90 0.00 3.41
4081 4315 6.477053 TTTCACCTGATTTTCCATTGTTCA 57.523 33.333 0.00 0.00 0.00 3.18
4149 4386 7.083875 TGCAAGTAGAAAATTCCCTTATTCG 57.916 36.000 0.00 0.00 0.00 3.34
4206 4443 6.359804 AGCATATGCCTTTCTTGTATCTTGA 58.640 36.000 23.96 0.00 43.38 3.02
4257 4494 2.069776 CCCAGGACAAGCAGGAGAA 58.930 57.895 0.00 0.00 0.00 2.87
4270 4507 3.131850 AAACAGGAGTTTGCCCAGG 57.868 52.632 0.00 0.00 45.79 4.45
4569 4806 2.420408 CCCCGTCCGGTACAAATACATT 60.420 50.000 0.00 0.00 32.40 2.71
4613 4850 2.884894 AGAAAACCTTGTCGTCGAGT 57.115 45.000 0.00 0.00 0.00 4.18
4712 4950 4.143263 GCAACAGATACAGCACAATTTTGC 60.143 41.667 8.56 8.56 43.34 3.68
4714 4952 5.199024 TGCAACAGATACAGCACAATTTT 57.801 34.783 0.00 0.00 31.05 1.82
4722 4960 3.012518 ACTTGGATGCAACAGATACAGC 58.987 45.455 0.00 0.00 0.00 4.40
4723 4961 5.048504 ACAAACTTGGATGCAACAGATACAG 60.049 40.000 0.00 0.00 0.00 2.74
4724 4962 4.826733 ACAAACTTGGATGCAACAGATACA 59.173 37.500 0.00 0.00 0.00 2.29
4725 4963 5.156355 CACAAACTTGGATGCAACAGATAC 58.844 41.667 0.00 0.00 0.00 2.24
4726 4964 4.218200 CCACAAACTTGGATGCAACAGATA 59.782 41.667 0.00 0.00 39.24 1.98
4738 4976 4.763793 AGATCTGATGAACCACAAACTTGG 59.236 41.667 0.00 0.00 43.04 3.61
4739 4977 5.390251 CGAGATCTGATGAACCACAAACTTG 60.390 44.000 0.00 0.00 0.00 3.16
4763 5001 4.982916 CCAAGCTACGTAGATATGTTGACC 59.017 45.833 26.53 4.19 0.00 4.02
4777 5015 4.569564 GGGAAATTGTACTACCAAGCTACG 59.430 45.833 0.00 0.00 0.00 3.51
4780 5018 3.308904 GGGGGAAATTGTACTACCAAGCT 60.309 47.826 0.00 0.00 0.00 3.74
4799 5037 1.627864 AATGAGTTTGGTTTCGGGGG 58.372 50.000 0.00 0.00 0.00 5.40
4800 5038 4.857509 TTTAATGAGTTTGGTTTCGGGG 57.142 40.909 0.00 0.00 0.00 5.73
4813 5051 8.906867 TCCTTATTTCTTCTGCCATTTAATGAG 58.093 33.333 6.50 0.00 0.00 2.90
4814 5052 8.821686 TCCTTATTTCTTCTGCCATTTAATGA 57.178 30.769 6.50 0.00 0.00 2.57
4843 5081 9.364110 GCGTTTGGTTTCATTTATTTTAAGTTG 57.636 29.630 0.00 0.00 0.00 3.16
4852 5090 9.474920 CCATATAATGCGTTTGGTTTCATTTAT 57.525 29.630 0.00 0.00 32.20 1.40
4854 5092 6.257630 GCCATATAATGCGTTTGGTTTCATTT 59.742 34.615 9.15 0.00 32.20 2.32
4855 5093 5.752955 GCCATATAATGCGTTTGGTTTCATT 59.247 36.000 9.15 0.00 34.08 2.57
4856 5094 5.163468 TGCCATATAATGCGTTTGGTTTCAT 60.163 36.000 9.15 0.00 0.00 2.57
4902 5141 5.604231 TCATATAGATGCTCCCTGTGAACTT 59.396 40.000 0.00 0.00 32.62 2.66
4903 5142 5.150715 TCATATAGATGCTCCCTGTGAACT 58.849 41.667 0.00 0.00 32.62 3.01
4904 5143 5.244851 TCTCATATAGATGCTCCCTGTGAAC 59.755 44.000 0.00 0.00 32.62 3.18
4905 5144 5.244851 GTCTCATATAGATGCTCCCTGTGAA 59.755 44.000 0.00 0.00 36.36 3.18
4906 5145 4.769488 GTCTCATATAGATGCTCCCTGTGA 59.231 45.833 0.00 0.00 36.36 3.58
4907 5146 4.081752 GGTCTCATATAGATGCTCCCTGTG 60.082 50.000 0.00 0.00 36.36 3.66
4908 5147 4.093011 GGTCTCATATAGATGCTCCCTGT 58.907 47.826 0.00 0.00 36.36 4.00
4909 5148 4.352009 AGGTCTCATATAGATGCTCCCTG 58.648 47.826 0.00 0.00 36.36 4.45
4910 5149 4.571792 GGAGGTCTCATATAGATGCTCCCT 60.572 50.000 9.42 6.03 34.74 4.20
4911 5150 3.704061 GGAGGTCTCATATAGATGCTCCC 59.296 52.174 9.42 2.06 34.74 4.30
4912 5151 4.609301 AGGAGGTCTCATATAGATGCTCC 58.391 47.826 11.64 11.64 38.20 4.70
4913 5152 6.833416 ACATAGGAGGTCTCATATAGATGCTC 59.167 42.308 5.06 0.00 34.74 4.26
4914 5153 6.606796 CACATAGGAGGTCTCATATAGATGCT 59.393 42.308 5.06 0.00 34.74 3.79
4915 5154 6.605194 TCACATAGGAGGTCTCATATAGATGC 59.395 42.308 5.06 0.00 34.74 3.91
4916 5155 7.201688 CGTCACATAGGAGGTCTCATATAGATG 60.202 44.444 5.06 7.89 34.74 2.90
4917 5156 6.826231 CGTCACATAGGAGGTCTCATATAGAT 59.174 42.308 5.06 0.00 34.74 1.98
4918 5157 6.174049 CGTCACATAGGAGGTCTCATATAGA 58.826 44.000 5.06 4.55 34.74 1.98
4919 5158 5.941058 ACGTCACATAGGAGGTCTCATATAG 59.059 44.000 5.06 2.63 34.74 1.31
4920 5159 5.705905 CACGTCACATAGGAGGTCTCATATA 59.294 44.000 5.06 0.00 34.74 0.86
4921 5160 4.520874 CACGTCACATAGGAGGTCTCATAT 59.479 45.833 0.00 0.00 37.08 1.78
4922 5161 3.883489 CACGTCACATAGGAGGTCTCATA 59.117 47.826 0.14 0.00 33.95 2.15
4923 5162 2.690497 CACGTCACATAGGAGGTCTCAT 59.310 50.000 0.14 0.00 33.95 2.90
4924 5163 2.092323 CACGTCACATAGGAGGTCTCA 58.908 52.381 0.14 0.00 33.95 3.27
4925 5164 2.093106 ACACGTCACATAGGAGGTCTC 58.907 52.381 0.00 0.00 33.95 3.36
4926 5165 2.217510 ACACGTCACATAGGAGGTCT 57.782 50.000 0.00 0.00 33.95 3.85
4927 5166 3.314541 AAACACGTCACATAGGAGGTC 57.685 47.619 0.00 0.00 33.95 3.85
4928 5167 3.399330 CAAAACACGTCACATAGGAGGT 58.601 45.455 0.00 0.00 36.41 3.85
4929 5168 2.159627 GCAAAACACGTCACATAGGAGG 59.840 50.000 0.00 0.00 0.00 4.30
4930 5169 2.159841 CGCAAAACACGTCACATAGGAG 60.160 50.000 0.00 0.00 0.00 3.69
4931 5170 1.795872 CGCAAAACACGTCACATAGGA 59.204 47.619 0.00 0.00 0.00 2.94
4932 5171 1.529438 ACGCAAAACACGTCACATAGG 59.471 47.619 0.00 0.00 40.28 2.57
4933 5172 2.941891 ACGCAAAACACGTCACATAG 57.058 45.000 0.00 0.00 40.28 2.23
4951 5190 2.096417 ACAGTTTGCGCGTCTATTTGAC 60.096 45.455 8.43 0.00 42.06 3.18
4952 5191 2.139917 ACAGTTTGCGCGTCTATTTGA 58.860 42.857 8.43 0.00 0.00 2.69
4953 5192 2.594529 ACAGTTTGCGCGTCTATTTG 57.405 45.000 8.43 2.48 0.00 2.32
4954 5193 2.414138 GGTACAGTTTGCGCGTCTATTT 59.586 45.455 8.43 0.00 0.00 1.40
4955 5194 1.997606 GGTACAGTTTGCGCGTCTATT 59.002 47.619 8.43 0.00 0.00 1.73
4956 5195 1.636988 GGTACAGTTTGCGCGTCTAT 58.363 50.000 8.43 0.00 0.00 1.98
4957 5196 0.730155 CGGTACAGTTTGCGCGTCTA 60.730 55.000 8.43 0.00 0.00 2.59
4958 5197 2.019951 CGGTACAGTTTGCGCGTCT 61.020 57.895 8.43 0.00 0.00 4.18
4959 5198 2.017783 TCGGTACAGTTTGCGCGTC 61.018 57.895 8.43 0.00 0.00 5.19
4960 5199 2.027897 TCGGTACAGTTTGCGCGT 59.972 55.556 8.43 0.00 0.00 6.01
4961 5200 2.019951 AGTCGGTACAGTTTGCGCG 61.020 57.895 0.00 0.00 0.00 6.86
4962 5201 0.942410 TCAGTCGGTACAGTTTGCGC 60.942 55.000 0.00 0.00 0.00 6.09
4963 5202 0.782384 GTCAGTCGGTACAGTTTGCG 59.218 55.000 0.00 0.00 0.00 4.85
4964 5203 1.145803 GGTCAGTCGGTACAGTTTGC 58.854 55.000 0.00 0.00 0.00 3.68
4965 5204 1.069513 TGGGTCAGTCGGTACAGTTTG 59.930 52.381 0.00 0.00 0.00 2.93
4966 5205 1.343465 CTGGGTCAGTCGGTACAGTTT 59.657 52.381 0.00 0.00 0.00 2.66
4967 5206 0.966920 CTGGGTCAGTCGGTACAGTT 59.033 55.000 0.00 0.00 0.00 3.16
4968 5207 1.533469 GCTGGGTCAGTCGGTACAGT 61.533 60.000 0.00 0.00 33.43 3.55
4969 5208 1.215647 GCTGGGTCAGTCGGTACAG 59.784 63.158 0.00 0.00 33.43 2.74
4970 5209 0.038599 TAGCTGGGTCAGTCGGTACA 59.961 55.000 0.00 0.00 33.43 2.90
4971 5210 0.455005 GTAGCTGGGTCAGTCGGTAC 59.545 60.000 0.00 0.00 33.43 3.34
4972 5211 0.330604 AGTAGCTGGGTCAGTCGGTA 59.669 55.000 0.00 0.00 33.43 4.02
4973 5212 1.076906 AGTAGCTGGGTCAGTCGGT 59.923 57.895 0.00 0.00 33.43 4.69
4974 5213 1.251527 ACAGTAGCTGGGTCAGTCGG 61.252 60.000 0.00 0.00 35.51 4.79
4975 5214 1.402259 CTACAGTAGCTGGGTCAGTCG 59.598 57.143 0.00 0.00 35.51 4.18
4987 5226 7.435068 TTTTTCTAGGCAAAAGCTACAGTAG 57.565 36.000 2.85 2.85 0.00 2.57
5039 5278 3.872630 GCCGAATCCCTGGAGTAGTTTTT 60.873 47.826 0.00 0.00 0.00 1.94
5040 5279 2.355818 GCCGAATCCCTGGAGTAGTTTT 60.356 50.000 0.00 0.00 0.00 2.43
5041 5280 1.209747 GCCGAATCCCTGGAGTAGTTT 59.790 52.381 0.00 0.00 0.00 2.66
5042 5281 0.831307 GCCGAATCCCTGGAGTAGTT 59.169 55.000 0.00 0.00 0.00 2.24
5043 5282 0.032017 AGCCGAATCCCTGGAGTAGT 60.032 55.000 0.00 0.00 0.00 2.73
5044 5283 1.996798 TAGCCGAATCCCTGGAGTAG 58.003 55.000 0.00 0.00 0.00 2.57
5045 5284 2.632996 CAATAGCCGAATCCCTGGAGTA 59.367 50.000 0.00 0.00 0.00 2.59
5046 5285 1.417890 CAATAGCCGAATCCCTGGAGT 59.582 52.381 0.00 0.00 0.00 3.85
5047 5286 1.417890 ACAATAGCCGAATCCCTGGAG 59.582 52.381 0.00 0.00 0.00 3.86
5048 5287 1.507140 ACAATAGCCGAATCCCTGGA 58.493 50.000 0.00 0.00 0.00 3.86
5049 5288 2.368875 ACTACAATAGCCGAATCCCTGG 59.631 50.000 0.00 0.00 0.00 4.45
5050 5289 3.393800 CACTACAATAGCCGAATCCCTG 58.606 50.000 0.00 0.00 0.00 4.45
5051 5290 2.224305 GCACTACAATAGCCGAATCCCT 60.224 50.000 0.00 0.00 0.00 4.20
5052 5291 2.143925 GCACTACAATAGCCGAATCCC 58.856 52.381 0.00 0.00 0.00 3.85
5053 5292 2.143925 GGCACTACAATAGCCGAATCC 58.856 52.381 0.00 0.00 38.86 3.01
5060 5299 1.202698 CCCTCCAGGCACTACAATAGC 60.203 57.143 0.00 0.00 36.02 2.97
5061 5300 2.918712 CCCTCCAGGCACTACAATAG 57.081 55.000 0.00 0.00 36.02 1.73
5072 5311 0.904865 TCACTACAGTGCCCTCCAGG 60.905 60.000 4.43 0.00 45.25 4.45
5073 5312 0.976641 TTCACTACAGTGCCCTCCAG 59.023 55.000 4.43 0.00 45.25 3.86
5074 5313 1.071699 GTTTCACTACAGTGCCCTCCA 59.928 52.381 4.43 0.00 45.25 3.86
5075 5314 1.809684 GTTTCACTACAGTGCCCTCC 58.190 55.000 4.43 0.00 45.25 4.30
5076 5315 1.429463 CGTTTCACTACAGTGCCCTC 58.571 55.000 4.43 0.00 45.25 4.30
5077 5316 0.034896 CCGTTTCACTACAGTGCCCT 59.965 55.000 4.43 0.00 45.25 5.19
5078 5317 0.034337 TCCGTTTCACTACAGTGCCC 59.966 55.000 4.43 0.00 45.25 5.36
5079 5318 1.145803 GTCCGTTTCACTACAGTGCC 58.854 55.000 4.43 0.00 45.25 5.01
5080 5319 1.145803 GGTCCGTTTCACTACAGTGC 58.854 55.000 4.43 0.00 45.25 4.40
5081 5320 2.223971 ACAGGTCCGTTTCACTACAGTG 60.224 50.000 2.84 2.84 46.91 3.66
5082 5321 2.037144 ACAGGTCCGTTTCACTACAGT 58.963 47.619 0.00 0.00 0.00 3.55
5083 5322 2.814280 ACAGGTCCGTTTCACTACAG 57.186 50.000 0.00 0.00 0.00 2.74
5084 5323 2.029649 GCTACAGGTCCGTTTCACTACA 60.030 50.000 0.00 0.00 0.00 2.74
5085 5324 2.230750 AGCTACAGGTCCGTTTCACTAC 59.769 50.000 0.00 0.00 0.00 2.73
5086 5325 2.522185 AGCTACAGGTCCGTTTCACTA 58.478 47.619 0.00 0.00 0.00 2.74
5087 5326 1.339097 AGCTACAGGTCCGTTTCACT 58.661 50.000 0.00 0.00 0.00 3.41
5088 5327 2.877335 CTAGCTACAGGTCCGTTTCAC 58.123 52.381 0.00 0.00 0.00 3.18
5089 5328 1.203994 GCTAGCTACAGGTCCGTTTCA 59.796 52.381 7.70 0.00 0.00 2.69
5090 5329 1.477295 AGCTAGCTACAGGTCCGTTTC 59.523 52.381 17.69 0.00 0.00 2.78
5091 5330 1.204941 CAGCTAGCTACAGGTCCGTTT 59.795 52.381 18.86 0.00 0.00 3.60
5092 5331 0.818296 CAGCTAGCTACAGGTCCGTT 59.182 55.000 18.86 0.00 0.00 4.44
5093 5332 1.038130 CCAGCTAGCTACAGGTCCGT 61.038 60.000 18.86 0.00 0.00 4.69
5094 5333 1.038130 ACCAGCTAGCTACAGGTCCG 61.038 60.000 18.86 1.83 0.00 4.79
5095 5334 1.137282 GAACCAGCTAGCTACAGGTCC 59.863 57.143 21.85 9.17 0.00 4.46
5096 5335 1.825474 TGAACCAGCTAGCTACAGGTC 59.175 52.381 21.85 18.83 0.00 3.85
5097 5336 1.550976 GTGAACCAGCTAGCTACAGGT 59.449 52.381 18.86 17.97 0.00 4.00
5098 5337 1.827969 AGTGAACCAGCTAGCTACAGG 59.172 52.381 18.86 17.25 0.00 4.00
5099 5338 3.067461 CCTAGTGAACCAGCTAGCTACAG 59.933 52.174 18.86 11.83 34.81 2.74
5100 5339 3.024547 CCTAGTGAACCAGCTAGCTACA 58.975 50.000 18.86 12.35 34.81 2.74
5101 5340 2.362717 CCCTAGTGAACCAGCTAGCTAC 59.637 54.545 18.86 11.83 34.81 3.58
5102 5341 2.024273 ACCCTAGTGAACCAGCTAGCTA 60.024 50.000 18.86 0.00 34.81 3.32
5103 5342 1.273324 ACCCTAGTGAACCAGCTAGCT 60.273 52.381 12.68 12.68 34.81 3.32
5104 5343 1.196012 ACCCTAGTGAACCAGCTAGC 58.804 55.000 6.62 6.62 34.81 3.42
5203 5442 9.917129 CTTACGGTTTTAAAAATAGTTCCCAAT 57.083 29.630 1.31 0.00 0.00 3.16
5204 5443 8.358895 CCTTACGGTTTTAAAAATAGTTCCCAA 58.641 33.333 1.31 0.00 0.00 4.12
5205 5444 7.505248 ACCTTACGGTTTTAAAAATAGTTCCCA 59.495 33.333 1.31 0.00 42.13 4.37
5206 5445 7.885297 ACCTTACGGTTTTAAAAATAGTTCCC 58.115 34.615 1.31 0.00 42.13 3.97
5223 5462 6.451393 TGGAAATTTTCATGAAACCTTACGG 58.549 36.000 20.35 0.00 0.00 4.02
5224 5463 7.145323 ACTGGAAATTTTCATGAAACCTTACG 58.855 34.615 20.35 14.00 0.00 3.18
5225 5464 8.141268 TGACTGGAAATTTTCATGAAACCTTAC 58.859 33.333 20.35 16.22 0.00 2.34
5226 5465 8.243961 TGACTGGAAATTTTCATGAAACCTTA 57.756 30.769 20.35 6.57 0.00 2.69
5227 5466 7.123355 TGACTGGAAATTTTCATGAAACCTT 57.877 32.000 20.35 15.47 0.00 3.50
5228 5467 6.729690 TGACTGGAAATTTTCATGAAACCT 57.270 33.333 20.35 8.36 0.00 3.50
5229 5468 9.657419 AATATGACTGGAAATTTTCATGAAACC 57.343 29.630 20.35 17.47 31.20 3.27
5259 5498 9.540431 CACGTTTTCAAGATTTGTTCAAAAATT 57.460 25.926 2.11 0.00 29.89 1.82
5260 5499 8.930760 TCACGTTTTCAAGATTTGTTCAAAAAT 58.069 25.926 2.11 0.00 32.43 1.82
5261 5500 8.299262 TCACGTTTTCAAGATTTGTTCAAAAA 57.701 26.923 2.11 0.00 0.00 1.94
5262 5501 7.875316 TCACGTTTTCAAGATTTGTTCAAAA 57.125 28.000 2.11 0.00 0.00 2.44
5263 5502 7.875316 TTCACGTTTTCAAGATTTGTTCAAA 57.125 28.000 0.44 0.44 0.00 2.69
5264 5503 7.875316 TTTCACGTTTTCAAGATTTGTTCAA 57.125 28.000 0.00 0.00 0.00 2.69
5265 5504 7.875316 TTTTCACGTTTTCAAGATTTGTTCA 57.125 28.000 0.00 0.00 0.00 3.18
5266 5505 9.753669 AAATTTTCACGTTTTCAAGATTTGTTC 57.246 25.926 0.00 0.00 0.00 3.18
5330 5569 9.753669 GTTCATGTTTCGAAAAAGTTCAAAATT 57.246 25.926 13.10 0.00 32.89 1.82
5331 5570 9.150348 AGTTCATGTTTCGAAAAAGTTCAAAAT 57.850 25.926 13.10 0.00 32.89 1.82
5332 5571 8.527567 AGTTCATGTTTCGAAAAAGTTCAAAA 57.472 26.923 13.10 2.95 32.89 2.44
5333 5572 8.527567 AAGTTCATGTTTCGAAAAAGTTCAAA 57.472 26.923 13.10 0.00 32.89 2.69
5334 5573 8.527567 AAAGTTCATGTTTCGAAAAAGTTCAA 57.472 26.923 13.10 0.00 32.89 2.69
5335 5574 8.527567 AAAAGTTCATGTTTCGAAAAAGTTCA 57.472 26.923 13.10 6.38 32.89 3.18
5371 5610 9.684448 TCACAAATTTCAAAAACGATTATGCTA 57.316 25.926 0.00 0.00 0.00 3.49
5372 5611 8.586570 TCACAAATTTCAAAAACGATTATGCT 57.413 26.923 0.00 0.00 0.00 3.79
5373 5612 9.091255 GTTCACAAATTTCAAAAACGATTATGC 57.909 29.630 0.00 0.00 0.00 3.14
5390 5629 9.743057 TCTCGTTTTCAATAAATGTTCACAAAT 57.257 25.926 0.00 0.00 0.00 2.32
5391 5630 9.574458 TTCTCGTTTTCAATAAATGTTCACAAA 57.426 25.926 0.00 0.00 0.00 2.83
5392 5631 9.015577 GTTCTCGTTTTCAATAAATGTTCACAA 57.984 29.630 0.00 0.00 0.00 3.33
5393 5632 8.184848 TGTTCTCGTTTTCAATAAATGTTCACA 58.815 29.630 0.00 0.00 0.00 3.58
5394 5633 8.555166 TGTTCTCGTTTTCAATAAATGTTCAC 57.445 30.769 0.00 0.00 0.00 3.18
5395 5634 9.743057 AATGTTCTCGTTTTCAATAAATGTTCA 57.257 25.926 0.00 0.00 0.00 3.18
5443 5682 8.947055 AACAAACTTTATGAGAAATGCTTGTT 57.053 26.923 0.00 0.00 32.47 2.83
5444 5683 8.196771 TGAACAAACTTTATGAGAAATGCTTGT 58.803 29.630 0.00 0.00 29.30 3.16
5445 5684 8.578308 TGAACAAACTTTATGAGAAATGCTTG 57.422 30.769 0.00 0.00 0.00 4.01
5446 5685 9.768662 AATGAACAAACTTTATGAGAAATGCTT 57.231 25.926 0.00 0.00 0.00 3.91
5447 5686 9.199982 CAATGAACAAACTTTATGAGAAATGCT 57.800 29.630 0.00 0.00 0.00 3.79
5448 5687 9.195411 TCAATGAACAAACTTTATGAGAAATGC 57.805 29.630 0.00 0.00 0.00 3.56
5501 5740 9.214957 CCGCTTTTTCCTTTTCCTTATTATTTT 57.785 29.630 0.00 0.00 0.00 1.82
5502 5741 8.590204 TCCGCTTTTTCCTTTTCCTTATTATTT 58.410 29.630 0.00 0.00 0.00 1.40
5503 5742 8.129496 TCCGCTTTTTCCTTTTCCTTATTATT 57.871 30.769 0.00 0.00 0.00 1.40
5504 5743 7.712204 TCCGCTTTTTCCTTTTCCTTATTAT 57.288 32.000 0.00 0.00 0.00 1.28
5505 5744 7.527568 TTCCGCTTTTTCCTTTTCCTTATTA 57.472 32.000 0.00 0.00 0.00 0.98
5506 5745 6.413783 TTCCGCTTTTTCCTTTTCCTTATT 57.586 33.333 0.00 0.00 0.00 1.40
5507 5746 6.266786 TCTTTCCGCTTTTTCCTTTTCCTTAT 59.733 34.615 0.00 0.00 0.00 1.73
5508 5747 5.595133 TCTTTCCGCTTTTTCCTTTTCCTTA 59.405 36.000 0.00 0.00 0.00 2.69
5509 5748 4.404394 TCTTTCCGCTTTTTCCTTTTCCTT 59.596 37.500 0.00 0.00 0.00 3.36
5510 5749 3.958147 TCTTTCCGCTTTTTCCTTTTCCT 59.042 39.130 0.00 0.00 0.00 3.36
5511 5750 4.316205 TCTTTCCGCTTTTTCCTTTTCC 57.684 40.909 0.00 0.00 0.00 3.13
5512 5751 6.656314 TTTTCTTTCCGCTTTTTCCTTTTC 57.344 33.333 0.00 0.00 0.00 2.29
5513 5752 6.821160 TGATTTTCTTTCCGCTTTTTCCTTTT 59.179 30.769 0.00 0.00 0.00 2.27
5514 5753 6.257849 GTGATTTTCTTTCCGCTTTTTCCTTT 59.742 34.615 0.00 0.00 0.00 3.11
5515 5754 5.753438 GTGATTTTCTTTCCGCTTTTTCCTT 59.247 36.000 0.00 0.00 0.00 3.36
5516 5755 5.163457 TGTGATTTTCTTTCCGCTTTTTCCT 60.163 36.000 0.00 0.00 0.00 3.36
5517 5756 5.047188 TGTGATTTTCTTTCCGCTTTTTCC 58.953 37.500 0.00 0.00 0.00 3.13
5518 5757 6.582437 TTGTGATTTTCTTTCCGCTTTTTC 57.418 33.333 0.00 0.00 0.00 2.29
5519 5758 6.976636 TTTGTGATTTTCTTTCCGCTTTTT 57.023 29.167 0.00 0.00 0.00 1.94
5520 5759 6.976636 TTTTGTGATTTTCTTTCCGCTTTT 57.023 29.167 0.00 0.00 0.00 2.27
5521 5760 6.771076 GTTTTTGTGATTTTCTTTCCGCTTT 58.229 32.000 0.00 0.00 0.00 3.51
5522 5761 6.344572 GTTTTTGTGATTTTCTTTCCGCTT 57.655 33.333 0.00 0.00 0.00 4.68
5523 5762 5.966636 GTTTTTGTGATTTTCTTTCCGCT 57.033 34.783 0.00 0.00 0.00 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.