Multiple sequence alignment - TraesCS7A01G168400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G168400 chr7A 100.000 5818 0 0 1 5818 125255688 125261505 0.000000e+00 10744.0
1 TraesCS7A01G168400 chr7A 90.236 297 18 7 3820 4110 696324841 696324550 1.530000e-100 377.0
2 TraesCS7A01G168400 chr7A 87.586 145 8 4 3540 3684 696324967 696324833 6.030000e-35 159.0
3 TraesCS7A01G168400 chr7A 92.208 77 6 0 5159 5235 68881171 68881095 6.160000e-20 110.0
4 TraesCS7A01G168400 chr7B 92.838 2960 114 35 2862 5797 81686807 81689692 0.000000e+00 4202.0
5 TraesCS7A01G168400 chr7B 90.991 2320 126 39 567 2847 81684543 81686818 0.000000e+00 3049.0
6 TraesCS7A01G168400 chr7B 92.437 476 32 2 2 473 81684015 81684490 0.000000e+00 676.0
7 TraesCS7A01G168400 chr7D 92.128 1931 73 33 958 2847 120314234 120316126 0.000000e+00 2651.0
8 TraesCS7A01G168400 chr7D 96.237 1621 46 6 3552 5165 120316776 120318388 0.000000e+00 2641.0
9 TraesCS7A01G168400 chr7D 91.841 907 55 9 2 904 120312813 120313704 0.000000e+00 1247.0
10 TraesCS7A01G168400 chr7D 87.092 643 45 19 5204 5818 120318488 120319120 0.000000e+00 693.0
11 TraesCS7A01G168400 chr7D 91.511 483 20 8 3038 3519 120316322 120316784 0.000000e+00 645.0
12 TraesCS7A01G168400 chr7D 95.556 180 8 0 2862 3041 120316115 120316294 7.380000e-74 289.0
13 TraesCS7A01G168400 chr7D 95.588 68 2 1 4040 4107 185353442 185353508 2.220000e-19 108.0
14 TraesCS7A01G168400 chr7D 92.208 77 5 1 5154 5229 614653700 614653776 2.220000e-19 108.0
15 TraesCS7A01G168400 chr7D 92.000 75 4 1 5159 5231 184573359 184573433 2.870000e-18 104.0
16 TraesCS7A01G168400 chr1A 91.096 292 15 7 3820 4105 582876909 582876623 9.150000e-103 385.0
17 TraesCS7A01G168400 chr1A 93.000 100 6 1 3585 3684 582876999 582876901 1.690000e-30 145.0
18 TraesCS7A01G168400 chr4A 90.476 294 20 5 3820 4110 225615102 225614814 1.180000e-101 381.0
19 TraesCS7A01G168400 chr4A 94.043 235 9 2 3876 4110 700325322 700325093 9.280000e-93 351.0
20 TraesCS7A01G168400 chr4A 93.069 101 6 1 3584 3684 225615193 225615094 4.700000e-31 147.0
21 TraesCS7A01G168400 chr4A 91.262 103 9 0 3090 3192 700325476 700325374 2.190000e-29 141.0
22 TraesCS7A01G168400 chr3B 95.714 70 3 0 5159 5228 520447968 520448037 4.760000e-21 113.0
23 TraesCS7A01G168400 chr6D 94.366 71 3 1 4040 4110 28132547 28132478 2.220000e-19 108.0
24 TraesCS7A01G168400 chr4B 89.535 86 5 4 5156 5239 667623472 667623389 7.970000e-19 106.0
25 TraesCS7A01G168400 chr4D 92.000 75 5 1 5155 5228 41219427 41219353 2.870000e-18 104.0
26 TraesCS7A01G168400 chr2D 90.909 77 5 1 5158 5232 170613470 170613546 1.030000e-17 102.0
27 TraesCS7A01G168400 chr5D 81.022 137 16 8 508 639 420624868 420624737 3.710000e-17 100.0
28 TraesCS7A01G168400 chr1B 89.024 82 5 4 5157 5235 421421366 421421286 1.330000e-16 99.0
29 TraesCS7A01G168400 chr2B 77.857 140 26 5 502 639 229184113 229184249 1.340000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G168400 chr7A 125255688 125261505 5817 False 10744.000000 10744 100.000000 1 5818 1 chr7A.!!$F1 5817
1 TraesCS7A01G168400 chr7B 81684015 81689692 5677 False 2642.333333 4202 92.088667 2 5797 3 chr7B.!!$F1 5795
2 TraesCS7A01G168400 chr7D 120312813 120319120 6307 False 1361.000000 2651 92.394167 2 5818 6 chr7D.!!$F4 5816

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.109458 CGTAGTACACGCAGCTGGAA 60.109 55.0 17.12 0.00 45.03 3.53 F
1072 1561 0.035739 TTACGGTTCTGCCCTTGTCC 59.964 55.0 0.00 0.00 0.00 4.02 F
1400 1889 0.249657 GCTCCATCGTGTGAGGATCC 60.250 60.0 2.48 2.48 0.00 3.36 F
2857 3398 0.039035 AGGCTGGATACCCGCAAAAA 59.961 50.0 6.54 0.00 34.94 1.94 F
3295 3892 0.111639 TTGTGGAGGTTTAGGTGCCC 59.888 55.0 0.00 0.00 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 2304 0.183731 GGATTCTCCCCCGAGCAATT 59.816 55.000 0.00 0.0 35.94 2.32 R
2838 3379 0.039035 TTTTTGCGGGTATCCAGCCT 59.961 50.000 8.25 0.0 40.40 4.58 R
3043 3615 1.376424 ACATGGAGAAGCAGCACCG 60.376 57.895 0.00 0.0 0.00 4.94 R
4305 4907 0.826715 CTGTGATGGAGGTGACCGAT 59.173 55.000 0.00 0.0 0.00 4.18 R
5079 5690 0.608856 ACCAATCAGTCGCATGCCAA 60.609 50.000 13.15 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 6.822676 TCATGAAAAGTGGAACAAAAATTGCT 59.177 30.769 0.00 0.00 44.16 3.91
89 90 3.367630 GGAACAAAAATTGCTATGCACGG 59.632 43.478 0.00 0.00 38.71 4.94
100 101 1.539388 CTATGCACGGACCAAAGCAAA 59.461 47.619 6.58 0.00 40.76 3.68
163 164 8.617290 TGTTATACAGTCTCTAATCGCATCTA 57.383 34.615 0.00 0.00 0.00 1.98
215 216 3.243434 ACGTACATTTCGCTAGAGATGGG 60.243 47.826 0.00 0.00 41.66 4.00
255 256 2.880890 AGTGTTGACATCTTGACAAGCC 59.119 45.455 10.50 0.85 33.19 4.35
275 276 0.109458 CGTAGTACACGCAGCTGGAA 60.109 55.000 17.12 0.00 45.03 3.53
294 295 5.885881 TGGAATGGCAATAACATACGTTTC 58.114 37.500 0.00 0.00 36.52 2.78
428 432 7.533900 CGATAAGACGATTTCAACATTTGTGTT 59.466 33.333 0.00 0.00 35.09 3.32
493 498 9.607988 TTTAAAAGGGGTTTTCTTTTTCTCATC 57.392 29.630 7.05 0.00 42.36 2.92
497 502 6.249192 AGGGGTTTTCTTTTTCTCATCTAGG 58.751 40.000 0.00 0.00 0.00 3.02
599 604 5.873179 TGAATCTCCACGTAAAATCCAAC 57.127 39.130 0.00 0.00 0.00 3.77
607 612 4.925054 CCACGTAAAATCCAACGAAGTAGA 59.075 41.667 1.45 0.00 45.00 2.59
668 677 7.625469 AGAGCTAGCCATACCCTAAAAATATC 58.375 38.462 12.13 0.00 0.00 1.63
669 678 6.722328 AGCTAGCCATACCCTAAAAATATCC 58.278 40.000 12.13 0.00 0.00 2.59
680 689 3.982576 AAAAATATCCGGGACAATCGC 57.017 42.857 0.00 0.00 0.00 4.58
711 720 6.349611 CCAACACACCCTTTCTCATGATTAAG 60.350 42.308 0.00 2.97 0.00 1.85
717 726 6.018425 CACCCTTTCTCATGATTAAGTCATCG 60.018 42.308 13.07 1.93 45.76 3.84
722 731 6.425210 TCTCATGATTAAGTCATCGGGATT 57.575 37.500 0.00 0.00 45.76 3.01
765 778 8.806429 ACTACAATCACACATGAATAATGGAA 57.194 30.769 0.00 0.00 40.94 3.53
776 789 5.999205 TGAATAATGGAACCAATTGTGCT 57.001 34.783 4.43 0.00 0.00 4.40
777 790 7.123997 ACATGAATAATGGAACCAATTGTGCTA 59.876 33.333 0.00 0.00 40.94 3.49
778 791 7.099266 TGAATAATGGAACCAATTGTGCTAG 57.901 36.000 4.43 0.00 0.00 3.42
862 875 4.711399 TCCTCATCAATCATCATCACACC 58.289 43.478 0.00 0.00 0.00 4.16
880 893 3.052869 ACACCTTTTTCTTGGAGTTCCCT 60.053 43.478 0.00 0.00 35.38 4.20
881 894 3.960755 CACCTTTTTCTTGGAGTTCCCTT 59.039 43.478 0.00 0.00 35.38 3.95
882 895 4.038042 CACCTTTTTCTTGGAGTTCCCTTC 59.962 45.833 0.00 0.00 35.38 3.46
883 896 3.574396 CCTTTTTCTTGGAGTTCCCTTCC 59.426 47.826 0.00 0.00 35.38 3.46
905 918 4.416516 CTTCCTCCAATTACCCACCTTTT 58.583 43.478 0.00 0.00 0.00 2.27
953 966 2.437651 CCCTCTCTTCCTTCCTTCATCC 59.562 54.545 0.00 0.00 0.00 3.51
954 967 3.110705 CCTCTCTTCCTTCCTTCATCCA 58.889 50.000 0.00 0.00 0.00 3.41
955 968 3.715834 CCTCTCTTCCTTCCTTCATCCAT 59.284 47.826 0.00 0.00 0.00 3.41
956 969 4.202346 CCTCTCTTCCTTCCTTCATCCATC 60.202 50.000 0.00 0.00 0.00 3.51
957 970 3.713764 TCTCTTCCTTCCTTCATCCATCC 59.286 47.826 0.00 0.00 0.00 3.51
958 971 3.715834 CTCTTCCTTCCTTCATCCATCCT 59.284 47.826 0.00 0.00 0.00 3.24
959 972 3.713764 TCTTCCTTCCTTCATCCATCCTC 59.286 47.826 0.00 0.00 0.00 3.71
1045 1534 0.518636 CAAAGCACACCCATCTCGTG 59.481 55.000 0.00 0.00 37.26 4.35
1070 1559 2.351706 TTTTACGGTTCTGCCCTTGT 57.648 45.000 0.00 0.00 0.00 3.16
1071 1560 1.886886 TTTACGGTTCTGCCCTTGTC 58.113 50.000 0.00 0.00 0.00 3.18
1072 1561 0.035739 TTACGGTTCTGCCCTTGTCC 59.964 55.000 0.00 0.00 0.00 4.02
1073 1562 1.833787 TACGGTTCTGCCCTTGTCCC 61.834 60.000 0.00 0.00 0.00 4.46
1074 1563 2.895424 CGGTTCTGCCCTTGTCCCT 61.895 63.158 0.00 0.00 0.00 4.20
1075 1564 1.303643 GGTTCTGCCCTTGTCCCTG 60.304 63.158 0.00 0.00 0.00 4.45
1076 1565 1.973812 GTTCTGCCCTTGTCCCTGC 60.974 63.158 0.00 0.00 0.00 4.85
1400 1889 0.249657 GCTCCATCGTGTGAGGATCC 60.250 60.000 2.48 2.48 0.00 3.36
1401 1890 1.407936 CTCCATCGTGTGAGGATCCT 58.592 55.000 16.13 16.13 0.00 3.24
1405 1894 0.760945 ATCGTGTGAGGATCCTCCCC 60.761 60.000 34.05 25.26 42.09 4.81
1406 1895 2.786495 CGTGTGAGGATCCTCCCCG 61.786 68.421 34.05 27.56 42.09 5.73
1408 1897 3.551407 GTGAGGATCCTCCCCGCC 61.551 72.222 34.05 13.53 42.09 6.13
1409 1898 4.880426 TGAGGATCCTCCCCGCCC 62.880 72.222 34.05 12.82 42.09 6.13
1562 2064 0.250513 AGCTCCACCAGTTCGGAATC 59.749 55.000 0.00 0.00 38.63 2.52
1605 2107 1.537202 GACGAACAATCTGGCTTTGCT 59.463 47.619 0.00 0.00 0.00 3.91
1658 2177 0.904394 TGGCAATTCTTGGGGAAGGC 60.904 55.000 0.00 0.00 37.36 4.35
1665 2184 1.371467 TCTTGGGGAAGGCAGAATCA 58.629 50.000 0.00 0.00 0.00 2.57
1669 2188 0.394899 GGGGAAGGCAGAATCACAGG 60.395 60.000 0.00 0.00 0.00 4.00
1701 2220 4.763793 AGATAATCATGATTGCTTTCCGGG 59.236 41.667 27.59 0.00 32.50 5.73
1770 2289 5.087397 GCTATTACGCGTCCTAGATTAGTG 58.913 45.833 18.63 0.00 0.00 2.74
1771 2290 5.106791 GCTATTACGCGTCCTAGATTAGTGA 60.107 44.000 18.63 0.00 0.00 3.41
1776 2295 3.558829 CGCGTCCTAGATTAGTGAGTACA 59.441 47.826 0.00 0.00 0.00 2.90
1777 2296 4.213694 CGCGTCCTAGATTAGTGAGTACAT 59.786 45.833 0.00 0.00 0.00 2.29
1778 2297 5.615106 CGCGTCCTAGATTAGTGAGTACATC 60.615 48.000 0.00 0.00 0.00 3.06
1779 2298 5.470777 GCGTCCTAGATTAGTGAGTACATCT 59.529 44.000 0.00 0.00 0.00 2.90
1780 2299 6.649973 GCGTCCTAGATTAGTGAGTACATCTA 59.350 42.308 0.00 0.00 0.00 1.98
1782 2301 8.875803 CGTCCTAGATTAGTGAGTACATCTATC 58.124 40.741 0.00 0.00 0.00 2.08
1783 2302 9.953565 GTCCTAGATTAGTGAGTACATCTATCT 57.046 37.037 0.00 0.00 0.00 1.98
1785 2304 9.952030 CCTAGATTAGTGAGTACATCTATCTGA 57.048 37.037 0.00 0.00 0.00 3.27
1978 2497 2.989166 GCTGTGCTGCTGATTTTAAACC 59.011 45.455 0.00 0.00 0.00 3.27
1979 2498 3.578688 CTGTGCTGCTGATTTTAAACCC 58.421 45.455 0.00 0.00 0.00 4.11
1982 2501 4.141846 TGTGCTGCTGATTTTAAACCCAAA 60.142 37.500 0.00 0.00 0.00 3.28
2132 2654 9.942850 TCTTTTCTTTTCCTTTTCTTGTTTGAT 57.057 25.926 0.00 0.00 0.00 2.57
2273 2797 1.748122 GTGTGAGCAGCTCATGGGG 60.748 63.158 27.86 0.00 42.73 4.96
2316 2840 4.754114 CCATATGCTCTTGCTCTTTAGGTC 59.246 45.833 0.00 0.00 40.48 3.85
2374 2898 5.467063 TGCCCGGTTTTGTGAATTAAAATTC 59.533 36.000 0.00 8.23 43.91 2.17
2477 3001 0.833287 TTGGACTGATCTAGCTGCCC 59.167 55.000 0.00 0.00 0.00 5.36
2493 3017 1.663739 CCCGAGTCAAGTTGGACGA 59.336 57.895 2.34 0.00 42.62 4.20
2539 3063 7.579726 CACTGAAGAGGATAAAAGAACAAGTG 58.420 38.462 0.00 0.00 0.00 3.16
2557 3081 5.240844 ACAAGTGGTAGTTTTTCACTATGCC 59.759 40.000 0.00 0.00 40.29 4.40
2558 3082 5.242795 AGTGGTAGTTTTTCACTATGCCT 57.757 39.130 0.00 0.00 40.29 4.75
2559 3083 5.246307 AGTGGTAGTTTTTCACTATGCCTC 58.754 41.667 0.00 0.00 40.29 4.70
2560 3084 5.001232 GTGGTAGTTTTTCACTATGCCTCA 58.999 41.667 0.00 0.00 40.29 3.86
2727 3268 5.411669 AGTTTTTCGAGATCCGTAAATTGCT 59.588 36.000 8.40 6.05 37.38 3.91
2765 3306 1.003580 GGAACTGAGCATGGAGGACAA 59.996 52.381 0.00 0.00 0.00 3.18
2844 3385 9.793259 TTCAGTCCTATATAATTTTTAGGCTGG 57.207 33.333 18.72 0.00 37.58 4.85
2845 3386 9.166222 TCAGTCCTATATAATTTTTAGGCTGGA 57.834 33.333 18.72 0.00 37.58 3.86
2846 3387 9.965902 CAGTCCTATATAATTTTTAGGCTGGAT 57.034 33.333 0.00 0.00 35.68 3.41
2850 3391 9.628500 CCTATATAATTTTTAGGCTGGATACCC 57.372 37.037 0.00 0.00 0.00 3.69
2851 3392 9.326413 CTATATAATTTTTAGGCTGGATACCCG 57.674 37.037 0.00 0.00 34.29 5.28
2852 3393 2.047002 TTTTTAGGCTGGATACCCGC 57.953 50.000 0.00 0.00 34.29 6.13
2853 3394 0.913205 TTTTAGGCTGGATACCCGCA 59.087 50.000 0.00 0.00 34.94 5.69
2854 3395 0.913205 TTTAGGCTGGATACCCGCAA 59.087 50.000 0.00 0.00 34.94 4.85
2855 3396 0.913205 TTAGGCTGGATACCCGCAAA 59.087 50.000 0.00 0.00 34.94 3.68
2856 3397 0.913205 TAGGCTGGATACCCGCAAAA 59.087 50.000 0.00 0.00 34.94 2.44
2857 3398 0.039035 AGGCTGGATACCCGCAAAAA 59.961 50.000 6.54 0.00 34.94 1.94
2895 3436 6.973229 TGATTGATTAGATCGCCACATATG 57.027 37.500 0.00 0.00 0.00 1.78
2914 3455 1.281867 TGGTTTGTGCCAGGGATCTAG 59.718 52.381 0.00 0.00 33.97 2.43
3043 3615 2.295070 TGCATCTGATGTTGGCATATGC 59.705 45.455 19.79 19.79 41.46 3.14
3092 3664 4.819769 TGGTTTTCCTGAATAGCAAATGC 58.180 39.130 0.00 0.00 41.38 3.56
3156 3728 7.656707 ATTTCATGCCACTTATGAACAAAAC 57.343 32.000 0.00 0.00 42.44 2.43
3165 3737 6.857964 CCACTTATGAACAAAACTTGCAGTAG 59.142 38.462 0.00 0.00 0.00 2.57
3178 3750 5.560724 ACTTGCAGTAGATTGTTGGTATGT 58.439 37.500 0.00 0.00 0.00 2.29
3293 3890 2.271944 ACTTGTGGAGGTTTAGGTGC 57.728 50.000 0.00 0.00 0.00 5.01
3294 3891 1.202891 ACTTGTGGAGGTTTAGGTGCC 60.203 52.381 0.00 0.00 0.00 5.01
3295 3892 0.111639 TTGTGGAGGTTTAGGTGCCC 59.888 55.000 0.00 0.00 0.00 5.36
3296 3893 0.770557 TGTGGAGGTTTAGGTGCCCT 60.771 55.000 0.00 0.00 37.71 5.19
3297 3894 0.404426 GTGGAGGTTTAGGTGCCCTT 59.596 55.000 0.00 0.00 34.61 3.95
3298 3895 1.631898 GTGGAGGTTTAGGTGCCCTTA 59.368 52.381 0.00 0.00 34.61 2.69
3299 3896 2.241430 GTGGAGGTTTAGGTGCCCTTAT 59.759 50.000 0.00 0.00 34.61 1.73
3300 3897 2.923629 TGGAGGTTTAGGTGCCCTTATT 59.076 45.455 0.00 0.00 34.61 1.40
3301 3898 3.335484 TGGAGGTTTAGGTGCCCTTATTT 59.665 43.478 0.00 0.00 34.61 1.40
3302 3899 3.699538 GGAGGTTTAGGTGCCCTTATTTG 59.300 47.826 0.00 0.00 34.61 2.32
3303 3900 3.096852 AGGTTTAGGTGCCCTTATTTGC 58.903 45.455 0.00 0.00 34.61 3.68
3304 3901 3.096852 GGTTTAGGTGCCCTTATTTGCT 58.903 45.455 0.00 0.00 34.61 3.91
3305 3902 3.130516 GGTTTAGGTGCCCTTATTTGCTC 59.869 47.826 0.00 0.00 34.61 4.26
3306 3903 3.730215 TTAGGTGCCCTTATTTGCTCA 57.270 42.857 0.00 0.00 34.61 4.26
3307 3904 2.134789 AGGTGCCCTTATTTGCTCAG 57.865 50.000 0.00 0.00 0.00 3.35
3308 3905 1.355720 AGGTGCCCTTATTTGCTCAGT 59.644 47.619 0.00 0.00 0.00 3.41
3309 3906 2.171003 GGTGCCCTTATTTGCTCAGTT 58.829 47.619 0.00 0.00 0.00 3.16
3310 3907 2.164422 GGTGCCCTTATTTGCTCAGTTC 59.836 50.000 0.00 0.00 0.00 3.01
3311 3908 2.819608 GTGCCCTTATTTGCTCAGTTCA 59.180 45.455 0.00 0.00 0.00 3.18
3312 3909 3.445096 GTGCCCTTATTTGCTCAGTTCAT 59.555 43.478 0.00 0.00 0.00 2.57
3313 3910 4.082026 GTGCCCTTATTTGCTCAGTTCATT 60.082 41.667 0.00 0.00 0.00 2.57
3314 3911 4.082081 TGCCCTTATTTGCTCAGTTCATTG 60.082 41.667 0.00 0.00 0.00 2.82
3315 3912 4.158394 GCCCTTATTTGCTCAGTTCATTGA 59.842 41.667 0.00 0.00 0.00 2.57
3316 3913 5.163478 GCCCTTATTTGCTCAGTTCATTGAT 60.163 40.000 0.00 0.00 0.00 2.57
3317 3914 6.270815 CCCTTATTTGCTCAGTTCATTGATG 58.729 40.000 0.00 0.00 0.00 3.07
3803 4404 4.612264 TGTGGTTTGTAGTCCTACCTTC 57.388 45.455 2.18 0.00 35.26 3.46
3811 4412 9.070179 GGTTTGTAGTCCTACCTTCAAAAATAA 57.930 33.333 2.18 0.00 34.75 1.40
3908 4509 0.833949 TGGCAAGTTGGGGTTTTTCC 59.166 50.000 4.75 0.00 0.00 3.13
4061 4663 8.617809 CCTTGGTACATTTAGCGTACAATATTT 58.382 33.333 0.00 0.00 40.84 1.40
4183 4785 5.048224 CCATTTATGTCCAGAATCTGATGCC 60.048 44.000 12.53 0.00 32.44 4.40
4305 4907 5.612261 TCATCTTCCATTGATCCTTCCCATA 59.388 40.000 0.00 0.00 0.00 2.74
4384 4994 6.899089 TCCAGATGTAAGAAATCAGCCATTA 58.101 36.000 0.00 0.00 0.00 1.90
4432 5042 9.696917 AAGGTAAGCTTAATCAGTTTTCATTTG 57.303 29.630 7.99 0.00 0.00 2.32
4440 5050 8.641499 TTAATCAGTTTTCATTTGACGCTTTT 57.359 26.923 0.00 0.00 0.00 2.27
4492 5102 3.846360 ACTTACTCACCGTGCAATACTC 58.154 45.455 0.00 0.00 0.00 2.59
4647 5257 1.154016 ATGGAGCTGTTCGACGTCG 60.154 57.895 31.30 31.30 41.45 5.12
4820 5430 7.370905 AGAATGAATCCATGAGATAGTGACA 57.629 36.000 0.00 0.00 33.66 3.58
5098 5709 0.608856 TTGGCATGCGACTGATTGGT 60.609 50.000 12.44 0.00 0.00 3.67
5103 5714 0.615331 ATGCGACTGATTGGTCTGGT 59.385 50.000 0.00 0.00 34.38 4.00
5144 5761 0.603707 ATGAGCGTATGAATGGCGGG 60.604 55.000 0.00 0.00 0.00 6.13
5168 5785 5.597182 GTGATACTAACATGTACTCCCTCCA 59.403 44.000 0.00 0.00 0.00 3.86
5179 5796 5.091552 TGTACTCCCTCCATCCCATAATAC 58.908 45.833 0.00 0.00 0.00 1.89
5192 5809 6.189677 TCCCATAATACAAGAGCGTTTTTG 57.810 37.500 0.85 0.85 0.00 2.44
5194 5811 6.601613 TCCCATAATACAAGAGCGTTTTTGAT 59.398 34.615 9.51 0.00 0.00 2.57
5201 5818 6.224420 ACAAGAGCGTTTTTGATACTACAC 57.776 37.500 9.51 0.00 0.00 2.90
5259 5937 2.347490 CCACAACTCCACGAGGGG 59.653 66.667 0.00 0.00 43.03 4.79
5272 5950 1.685224 GAGGGGGCTGTTCATGTGA 59.315 57.895 0.00 0.00 0.00 3.58
5277 5955 1.478105 GGGGCTGTTCATGTGAAATCC 59.522 52.381 0.00 0.00 35.58 3.01
5284 5962 5.727791 GCTGTTCATGTGAAATCCATACGAC 60.728 44.000 0.00 0.00 35.58 4.34
5358 6041 3.057946 GCAGGTCCTTGTGAGACAAAATC 60.058 47.826 0.00 0.00 37.69 2.17
5393 6077 9.352784 TCTGTTTGCAAATAACATAACTAATGC 57.647 29.630 16.21 0.00 39.39 3.56
5407 6091 7.447238 ACATAACTAATGCTGTACCACTGTTTT 59.553 33.333 0.00 0.00 39.39 2.43
5488 6172 7.985184 TCGGTCTATACAATAAACAATGCTCTT 59.015 33.333 0.00 0.00 0.00 2.85
5498 6182 4.773323 AACAATGCTCTTGCTAGTTTCC 57.227 40.909 0.00 0.00 40.48 3.13
5628 6317 3.271153 AAGTTGTAGGGTAGGGACTGT 57.729 47.619 0.00 0.00 41.52 3.55
5682 6371 0.958822 GTAGCCAAAACACACAGGGG 59.041 55.000 0.00 0.00 0.00 4.79
5683 6372 0.825840 TAGCCAAAACACACAGGGGC 60.826 55.000 0.00 0.00 41.65 5.80
5718 6407 1.905843 CACATTCCCCCAAACCGCA 60.906 57.895 0.00 0.00 0.00 5.69
5719 6408 1.906333 ACATTCCCCCAAACCGCAC 60.906 57.895 0.00 0.00 0.00 5.34
5720 6409 1.905843 CATTCCCCCAAACCGCACA 60.906 57.895 0.00 0.00 0.00 4.57
5721 6410 1.078347 ATTCCCCCAAACCGCACAT 59.922 52.632 0.00 0.00 0.00 3.21
5732 6424 4.570369 CCAAACCGCACATCTTTTTCTTTT 59.430 37.500 0.00 0.00 0.00 2.27
5733 6425 5.276820 CCAAACCGCACATCTTTTTCTTTTC 60.277 40.000 0.00 0.00 0.00 2.29
5734 6426 3.977427 ACCGCACATCTTTTTCTTTTCC 58.023 40.909 0.00 0.00 0.00 3.13
5735 6427 3.636764 ACCGCACATCTTTTTCTTTTCCT 59.363 39.130 0.00 0.00 0.00 3.36
5737 6429 5.300792 ACCGCACATCTTTTTCTTTTCCTTA 59.699 36.000 0.00 0.00 0.00 2.69
5738 6430 6.015434 ACCGCACATCTTTTTCTTTTCCTTAT 60.015 34.615 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.009174 CCTTCAACATTAACGATAAAACCATGC 59.991 37.037 0.00 0.00 0.00 4.06
81 82 1.610363 TTTGCTTTGGTCCGTGCATA 58.390 45.000 0.00 0.00 35.27 3.14
163 164 5.055144 CACTTACATGCTGAGTCATGCTAT 58.945 41.667 14.00 5.47 45.75 2.97
235 236 2.030805 GGGCTTGTCAAGATGTCAACAC 60.031 50.000 16.99 0.00 0.00 3.32
275 276 5.888691 TGTGAAACGTATGTTATTGCCAT 57.111 34.783 0.00 0.00 42.39 4.40
294 295 3.667360 TGATAGGCCGATCATTGATGTG 58.333 45.455 23.11 0.00 30.75 3.21
397 401 3.793797 TGAAATCGTCTTATCGAGGCA 57.206 42.857 0.00 0.00 43.00 4.75
474 479 6.010850 ACCTAGATGAGAAAAAGAAAACCCC 58.989 40.000 0.00 0.00 0.00 4.95
493 498 9.273016 TGAGACTTTGTTATTTTTCTCACCTAG 57.727 33.333 0.00 0.00 35.65 3.02
497 502 9.950680 TTGATGAGACTTTGTTATTTTTCTCAC 57.049 29.630 1.36 0.00 41.59 3.51
577 582 4.390603 CGTTGGATTTTACGTGGAGATTCA 59.609 41.667 0.00 0.00 33.33 2.57
632 637 7.780745 GGGTATGGCTAGCTCTTATCTAGATAA 59.219 40.741 21.24 21.24 36.50 1.75
642 647 5.710409 TTTTTAGGGTATGGCTAGCTCTT 57.290 39.130 15.72 5.83 0.00 2.85
654 659 5.972327 TTGTCCCGGATATTTTTAGGGTA 57.028 39.130 0.73 0.00 42.57 3.69
668 677 1.644786 GGTTCAAGCGATTGTCCCGG 61.645 60.000 13.85 0.00 0.00 5.73
669 678 0.953471 TGGTTCAAGCGATTGTCCCG 60.953 55.000 13.85 0.00 0.00 5.14
680 689 3.023832 AGAAAGGGTGTGTTGGTTCAAG 58.976 45.455 0.00 0.00 0.00 3.02
731 743 7.809665 TCATGTGTGATTGTAGTTCAATTCTG 58.190 34.615 0.00 0.00 45.49 3.02
738 750 8.892723 TCCATTATTCATGTGTGATTGTAGTTC 58.107 33.333 0.00 0.00 33.56 3.01
746 758 7.664552 ATTGGTTCCATTATTCATGTGTGAT 57.335 32.000 0.00 0.00 33.56 3.06
747 759 7.039152 ACAATTGGTTCCATTATTCATGTGTGA 60.039 33.333 10.83 0.00 0.00 3.58
765 778 4.528596 AGAGTGTCTACTAGCACAATTGGT 59.471 41.667 10.83 0.00 37.25 3.67
776 789 9.327628 GTGTTATGACATCTAGAGTGTCTACTA 57.672 37.037 23.74 15.28 44.80 1.82
777 790 7.829706 TGTGTTATGACATCTAGAGTGTCTACT 59.170 37.037 23.74 15.89 44.80 2.57
778 791 7.911205 GTGTGTTATGACATCTAGAGTGTCTAC 59.089 40.741 23.74 19.93 44.80 2.59
862 875 4.474394 AGGAAGGGAACTCCAAGAAAAAG 58.526 43.478 0.00 0.00 42.68 2.27
880 893 2.310647 GGTGGGTAATTGGAGGAAGGAA 59.689 50.000 0.00 0.00 0.00 3.36
881 894 1.920351 GGTGGGTAATTGGAGGAAGGA 59.080 52.381 0.00 0.00 0.00 3.36
882 895 1.923148 AGGTGGGTAATTGGAGGAAGG 59.077 52.381 0.00 0.00 0.00 3.46
883 896 3.739401 AAGGTGGGTAATTGGAGGAAG 57.261 47.619 0.00 0.00 0.00 3.46
905 918 0.560688 AAAAGGTTGCAAGAGGGGGA 59.439 50.000 0.00 0.00 0.00 4.81
953 966 6.593382 GCAGAGGTTATTTATAGCAGAGGATG 59.407 42.308 0.00 0.00 0.00 3.51
954 967 6.296145 GGCAGAGGTTATTTATAGCAGAGGAT 60.296 42.308 0.00 0.00 0.00 3.24
955 968 5.012148 GGCAGAGGTTATTTATAGCAGAGGA 59.988 44.000 0.00 0.00 0.00 3.71
956 969 5.012561 AGGCAGAGGTTATTTATAGCAGAGG 59.987 44.000 0.00 0.00 0.00 3.69
957 970 6.107901 AGGCAGAGGTTATTTATAGCAGAG 57.892 41.667 0.00 0.00 0.00 3.35
958 971 6.464465 GGAAGGCAGAGGTTATTTATAGCAGA 60.464 42.308 0.00 0.00 0.00 4.26
959 972 5.703130 GGAAGGCAGAGGTTATTTATAGCAG 59.297 44.000 0.00 0.00 0.00 4.24
1045 1534 1.100510 GCAGAACCGTAAAATCCCCC 58.899 55.000 0.00 0.00 0.00 5.40
1467 1969 1.957177 GAGGTACCTGAGCGATGATGA 59.043 52.381 22.10 0.00 0.00 2.92
1468 1970 1.959985 AGAGGTACCTGAGCGATGATG 59.040 52.381 22.10 0.00 0.00 3.07
1469 1971 1.959985 CAGAGGTACCTGAGCGATGAT 59.040 52.381 22.10 0.00 36.29 2.45
1562 2064 2.818274 GTTACCTTGCGGCCCTCG 60.818 66.667 0.00 0.00 42.76 4.63
1584 2086 1.537202 GCAAAGCCAGATTGTTCGTCT 59.463 47.619 0.00 0.00 0.00 4.18
1692 2211 1.030457 TCTCGTATCTCCCGGAAAGC 58.970 55.000 0.73 0.00 0.00 3.51
1701 2220 3.198068 TGGCAAGCAATTCTCGTATCTC 58.802 45.455 0.00 0.00 0.00 2.75
1733 2252 3.119628 CGTAATAGCGACATGATCAACGG 59.880 47.826 17.27 6.64 0.00 4.44
1770 2289 5.861251 CCGAGCAATTCAGATAGATGTACTC 59.139 44.000 0.00 0.00 0.00 2.59
1771 2290 5.279206 CCCGAGCAATTCAGATAGATGTACT 60.279 44.000 0.00 0.00 0.00 2.73
1776 2295 2.304180 CCCCCGAGCAATTCAGATAGAT 59.696 50.000 0.00 0.00 0.00 1.98
1777 2296 1.694150 CCCCCGAGCAATTCAGATAGA 59.306 52.381 0.00 0.00 0.00 1.98
1778 2297 1.694150 TCCCCCGAGCAATTCAGATAG 59.306 52.381 0.00 0.00 0.00 2.08
1779 2298 1.694150 CTCCCCCGAGCAATTCAGATA 59.306 52.381 0.00 0.00 0.00 1.98
1780 2299 0.471617 CTCCCCCGAGCAATTCAGAT 59.528 55.000 0.00 0.00 0.00 2.90
1782 2301 0.253044 TTCTCCCCCGAGCAATTCAG 59.747 55.000 0.00 0.00 35.94 3.02
1783 2302 0.918983 ATTCTCCCCCGAGCAATTCA 59.081 50.000 0.00 0.00 35.94 2.57
1785 2304 0.183731 GGATTCTCCCCCGAGCAATT 59.816 55.000 0.00 0.00 35.94 2.32
1786 2305 0.988145 TGGATTCTCCCCCGAGCAAT 60.988 55.000 0.00 0.00 35.03 3.56
1787 2306 1.204786 TTGGATTCTCCCCCGAGCAA 61.205 55.000 0.00 0.00 35.03 3.91
1788 2307 0.988145 ATTGGATTCTCCCCCGAGCA 60.988 55.000 0.00 0.00 35.03 4.26
1810 2329 3.769300 ACAAATAAAATCCAGCCAGGGAC 59.231 43.478 0.00 0.00 40.44 4.46
2001 2523 5.185828 AGGAGCAAACCAATTAGAAACCATC 59.814 40.000 0.00 0.00 0.00 3.51
2132 2654 8.196771 ACTTTGCAGAAACAGTGAAAATATCAA 58.803 29.630 0.00 0.00 40.50 2.57
2200 2723 7.713764 AATAAATTGTGTCCTTCTTGCAAAC 57.286 32.000 0.00 0.00 0.00 2.93
2273 2797 2.202566 GCGTGAATAGGAGTTACAGGC 58.797 52.381 0.00 0.00 35.80 4.85
2316 2840 4.857037 GGACCATTAAAGCTGCTTAAAACG 59.143 41.667 16.31 5.96 0.00 3.60
2355 2879 9.715123 CAACCAAGAATTTTAATTCACAAAACC 57.285 29.630 15.43 0.00 45.59 3.27
2374 2898 3.044809 GCTGCATGCATCAACCAAG 57.955 52.632 22.97 7.95 42.31 3.61
2477 3001 3.247648 ACATTTTCGTCCAACTTGACTCG 59.752 43.478 0.00 0.00 32.97 4.18
2539 3063 5.488341 TCTGAGGCATAGTGAAAAACTACC 58.512 41.667 0.00 0.00 44.20 3.18
2594 3130 4.646492 ACTGACATGCCCTCAATTATTTCC 59.354 41.667 0.00 0.00 0.00 3.13
2727 3268 3.081710 TCCATCTACTCGGTGAACAGA 57.918 47.619 0.00 0.00 0.00 3.41
2838 3379 0.039035 TTTTTGCGGGTATCCAGCCT 59.961 50.000 8.25 0.00 40.40 4.58
2839 3380 2.573920 TTTTTGCGGGTATCCAGCC 58.426 52.632 8.25 0.00 39.08 4.85
2857 3398 9.425248 TCTAATCAATCATCCAGCCTAAATTTT 57.575 29.630 0.00 0.00 0.00 1.82
2858 3399 9.597681 ATCTAATCAATCATCCAGCCTAAATTT 57.402 29.630 0.00 0.00 0.00 1.82
2859 3400 9.240734 GATCTAATCAATCATCCAGCCTAAATT 57.759 33.333 0.00 0.00 0.00 1.82
2860 3401 7.551974 CGATCTAATCAATCATCCAGCCTAAAT 59.448 37.037 0.00 0.00 0.00 1.40
2861 3402 6.875726 CGATCTAATCAATCATCCAGCCTAAA 59.124 38.462 0.00 0.00 0.00 1.85
2862 3403 6.401394 CGATCTAATCAATCATCCAGCCTAA 58.599 40.000 0.00 0.00 0.00 2.69
2863 3404 5.625426 GCGATCTAATCAATCATCCAGCCTA 60.625 44.000 0.00 0.00 0.00 3.93
2864 3405 4.829968 CGATCTAATCAATCATCCAGCCT 58.170 43.478 0.00 0.00 0.00 4.58
2895 3436 2.019156 GCTAGATCCCTGGCACAAACC 61.019 57.143 0.00 0.00 45.06 3.27
2914 3455 4.995487 TCACATGCTCAGATCTATCATTGC 59.005 41.667 0.00 0.00 0.00 3.56
2966 3507 5.244178 ACAGGGAACAGTACAACAACAAAAA 59.756 36.000 0.00 0.00 0.00 1.94
3043 3615 1.376424 ACATGGAGAAGCAGCACCG 60.376 57.895 0.00 0.00 0.00 4.94
3092 3664 9.145865 GGTAAAATTACATGTAAAACACCATGG 57.854 33.333 21.57 11.19 42.15 3.66
3125 3697 9.638239 GTTCATAAGTGGCATGAAATTCTTTTA 57.362 29.630 0.00 0.00 42.44 1.52
3156 3728 5.643348 TCACATACCAACAATCTACTGCAAG 59.357 40.000 0.00 0.00 42.29 4.01
3165 3737 5.957842 TGGAACTTCACATACCAACAATC 57.042 39.130 0.00 0.00 0.00 2.67
3215 3787 9.357652 CTACAATATGTGTCCCTTCAAAAATTG 57.642 33.333 0.00 0.00 41.98 2.32
3293 3890 5.902613 TCAATGAACTGAGCAAATAAGGG 57.097 39.130 0.00 0.00 0.00 3.95
3294 3891 6.971184 GTCATCAATGAACTGAGCAAATAAGG 59.029 38.462 0.00 0.00 38.75 2.69
3295 3892 7.532571 TGTCATCAATGAACTGAGCAAATAAG 58.467 34.615 0.00 0.00 38.75 1.73
3296 3893 7.451501 TGTCATCAATGAACTGAGCAAATAA 57.548 32.000 0.00 0.00 38.75 1.40
3297 3894 7.451501 TTGTCATCAATGAACTGAGCAAATA 57.548 32.000 0.00 0.00 38.75 1.40
3298 3895 5.970317 TGTCATCAATGAACTGAGCAAAT 57.030 34.783 0.00 0.00 38.75 2.32
3299 3896 5.771153 TTGTCATCAATGAACTGAGCAAA 57.229 34.783 0.00 0.00 38.75 3.68
3300 3897 5.970317 ATTGTCATCAATGAACTGAGCAA 57.030 34.783 0.00 0.00 41.95 3.91
3301 3898 5.242171 ACAATTGTCATCAATGAACTGAGCA 59.758 36.000 4.92 0.00 42.60 4.26
3302 3899 5.571741 CACAATTGTCATCAATGAACTGAGC 59.428 40.000 8.48 0.00 42.60 4.26
3303 3900 6.905578 TCACAATTGTCATCAATGAACTGAG 58.094 36.000 8.48 0.00 42.60 3.35
3304 3901 6.880942 TCACAATTGTCATCAATGAACTGA 57.119 33.333 8.48 0.00 42.60 3.41
3312 3909 8.676401 CCACAACTATATCACAATTGTCATCAA 58.324 33.333 8.48 0.00 37.98 2.57
3313 3910 7.282901 CCCACAACTATATCACAATTGTCATCA 59.717 37.037 8.48 0.00 31.25 3.07
3314 3911 7.642669 CCCACAACTATATCACAATTGTCATC 58.357 38.462 8.48 0.00 31.25 2.92
3315 3912 6.039717 GCCCACAACTATATCACAATTGTCAT 59.960 38.462 8.48 3.68 31.25 3.06
3316 3913 5.356751 GCCCACAACTATATCACAATTGTCA 59.643 40.000 8.48 0.00 31.25 3.58
3317 3914 5.356751 TGCCCACAACTATATCACAATTGTC 59.643 40.000 8.48 0.00 31.25 3.18
3446 4045 8.723311 CCAAATAATTAAAACGGACTAGTCACA 58.277 33.333 23.91 0.37 0.00 3.58
3447 4046 8.179615 CCCAAATAATTAAAACGGACTAGTCAC 58.820 37.037 23.91 12.38 0.00 3.67
3448 4047 8.102047 TCCCAAATAATTAAAACGGACTAGTCA 58.898 33.333 23.91 2.18 0.00 3.41
3519 4118 9.309516 AGCATCAGTCAAAAGCAATAAAATATG 57.690 29.630 0.00 0.00 0.00 1.78
3527 4126 6.519679 TTCATAGCATCAGTCAAAAGCAAT 57.480 33.333 0.00 0.00 0.00 3.56
3538 4137 7.317842 AGTTTCTTGTCATTCATAGCATCAG 57.682 36.000 0.00 0.00 0.00 2.90
3649 4249 1.134340 ACAGCAACAGAACAACCGGTA 60.134 47.619 8.00 0.00 0.00 4.02
3765 4366 1.475280 CACATTTGGATGTCCCTGCTG 59.525 52.381 0.00 0.00 44.55 4.41
3824 4425 6.262207 AGTAGGGTTCAGTATAAGGTCAACT 58.738 40.000 0.00 0.00 0.00 3.16
3876 4477 4.256110 CAACTTGCCATGTCTGTCTATCA 58.744 43.478 0.00 0.00 0.00 2.15
4183 4785 2.189594 TTCAGGCATTGTCAGACCAG 57.810 50.000 0.00 0.00 0.00 4.00
4305 4907 0.826715 CTGTGATGGAGGTGACCGAT 59.173 55.000 0.00 0.00 0.00 4.18
4384 4994 3.008375 TGCCTCTCTTGCAGTGAATAAGT 59.992 43.478 0.00 0.00 34.05 2.24
4432 5042 2.622436 AGATACCAGCTGAAAAGCGTC 58.378 47.619 17.39 3.38 40.27 5.19
4440 5050 3.089284 TCGACTTGAAGATACCAGCTGA 58.911 45.455 17.39 0.00 0.00 4.26
4492 5102 1.394917 GGTGCTGCAGATACAAACGAG 59.605 52.381 20.43 0.00 0.00 4.18
4647 5257 1.669115 TCAGGTGCTTCAAGCTCGC 60.669 57.895 11.57 1.60 42.97 5.03
5052 5663 5.302568 CCATGCCAAAAGCCTCTGATTAATA 59.697 40.000 0.00 0.00 42.71 0.98
5077 5688 1.535226 CCAATCAGTCGCATGCCAATG 60.535 52.381 13.15 9.59 36.82 2.82
5078 5689 0.742505 CCAATCAGTCGCATGCCAAT 59.257 50.000 13.15 0.00 0.00 3.16
5079 5690 0.608856 ACCAATCAGTCGCATGCCAA 60.609 50.000 13.15 0.00 0.00 4.52
5098 5709 8.362464 ACTCATTAAGTTCTATGTGTACCAGA 57.638 34.615 0.00 0.00 33.03 3.86
5144 5761 5.597182 TGGAGGGAGTACATGTTAGTATCAC 59.403 44.000 2.30 0.00 0.00 3.06
5168 5785 6.601613 TCAAAAACGCTCTTGTATTATGGGAT 59.398 34.615 0.00 0.00 0.00 3.85
5179 5796 6.467723 AGTGTAGTATCAAAAACGCTCTTG 57.532 37.500 0.00 0.00 0.00 3.02
5194 5811 8.385491 TCCGTCCCATAATATAAGAGTGTAGTA 58.615 37.037 0.00 0.00 0.00 1.82
5201 5818 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
5259 5937 4.496341 CGTATGGATTTCACATGAACAGCC 60.496 45.833 0.00 0.00 33.13 4.85
5272 5950 3.930848 GAGGTTGTTCGTCGTATGGATTT 59.069 43.478 0.00 0.00 0.00 2.17
5277 5955 2.094906 TGGAGAGGTTGTTCGTCGTATG 60.095 50.000 0.00 0.00 36.24 2.39
5284 5962 1.257743 TCTCCTGGAGAGGTTGTTCG 58.742 55.000 22.30 0.00 43.44 3.95
5330 6013 0.036732 TCACAAGGACCTGCCATGTC 59.963 55.000 0.00 0.00 44.96 3.06
5358 6041 4.843220 ATTTGCAAACAGAAGAGTCCAG 57.157 40.909 15.41 0.00 0.00 3.86
5393 6077 5.560966 AACTTGTGAAAACAGTGGTACAG 57.439 39.130 0.00 0.00 41.80 2.74
5488 6172 6.290294 ACTTCTTTATACGGGAAACTAGCA 57.710 37.500 0.00 0.00 0.00 3.49
5498 6182 9.702726 CACAAATCATGTTACTTCTTTATACGG 57.297 33.333 0.00 0.00 41.46 4.02
5584 6270 4.879104 ACACTAGAGAATTCGACTACCG 57.121 45.455 0.00 3.38 40.25 4.02
5628 6317 2.687935 GAGCGGCAAATAGGATTTTCCA 59.312 45.455 1.45 0.00 39.61 3.53
5682 6371 1.354155 GCCGGCCTAATTTACACGC 59.646 57.895 18.11 0.00 0.00 5.34
5683 6372 0.375803 GTGCCGGCCTAATTTACACG 59.624 55.000 26.77 0.00 0.00 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.