Multiple sequence alignment - TraesCS7A01G167900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G167900 chr7A 100.000 5072 0 0 1 5072 124071795 124066724 0.000000e+00 9367.0
1 TraesCS7A01G167900 chr7A 95.139 144 3 3 4488 4628 78334325 78334183 1.840000e-54 224.0
2 TraesCS7A01G167900 chr7D 93.731 4259 126 56 298 4490 119569692 119565509 0.000000e+00 6255.0
3 TraesCS7A01G167900 chr7D 96.417 307 7 2 4615 4921 119565517 119565215 2.110000e-138 503.0
4 TraesCS7A01G167900 chr7D 90.625 96 3 4 4937 5027 119564280 119564186 6.900000e-24 122.0
5 TraesCS7A01G167900 chr7D 91.071 56 5 0 3961 4016 249429163 249429218 5.450000e-10 76.8
6 TraesCS7A01G167900 chr7B 91.029 2798 123 44 321 3056 80663319 80660588 0.000000e+00 3659.0
7 TraesCS7A01G167900 chr7B 93.225 1476 56 13 3038 4490 80660581 80659127 0.000000e+00 2132.0
8 TraesCS7A01G167900 chr7B 91.954 435 13 9 4615 5038 80659135 80658712 1.570000e-164 590.0
9 TraesCS7A01G167900 chr7B 100.000 125 0 0 4490 4614 336360961 336361085 1.100000e-56 231.0
10 TraesCS7A01G167900 chr7B 100.000 125 0 0 4489 4613 534538235 534538111 1.100000e-56 231.0
11 TraesCS7A01G167900 chr2D 96.321 299 10 1 1 299 516860651 516860948 1.640000e-134 490.0
12 TraesCS7A01G167900 chr2D 100.000 125 0 0 4491 4615 405174463 405174339 1.100000e-56 231.0
13 TraesCS7A01G167900 chr2D 91.071 56 5 0 3961 4016 523630157 523630212 5.450000e-10 76.8
14 TraesCS7A01G167900 chr2D 77.600 125 26 2 1250 1373 511688584 511688707 1.960000e-09 75.0
15 TraesCS7A01G167900 chr2B 95.681 301 12 1 1 301 77779586 77779287 2.750000e-132 483.0
16 TraesCS7A01G167900 chr2B 95.623 297 12 1 1 297 798371932 798371637 4.590000e-130 475.0
17 TraesCS7A01G167900 chr2B 100.000 125 0 0 4490 4614 24197149 24197273 1.100000e-56 231.0
18 TraesCS7A01G167900 chr2B 77.600 125 26 2 1250 1373 600740647 600740770 1.960000e-09 75.0
19 TraesCS7A01G167900 chr6B 95.960 297 11 1 1 297 634640620 634640325 9.880000e-132 481.0
20 TraesCS7A01G167900 chr6B 77.824 478 87 17 2491 2958 623082732 623082264 1.390000e-70 278.0
21 TraesCS7A01G167900 chr6B 93.919 148 7 1 4490 4635 96877547 96877400 6.610000e-54 222.0
22 TraesCS7A01G167900 chr6B 85.366 123 16 2 1252 1373 485537662 485537783 5.330000e-25 126.0
23 TraesCS7A01G167900 chr3B 95.652 299 12 1 1 299 606376345 606376048 3.550000e-131 479.0
24 TraesCS7A01G167900 chr3A 95.349 301 12 2 1 301 716253848 716254146 1.280000e-130 477.0
25 TraesCS7A01G167900 chr6A 95.623 297 12 1 1 297 181909857 181910152 4.590000e-130 475.0
26 TraesCS7A01G167900 chr6A 78.151 476 87 16 2492 2958 558787239 558786772 2.310000e-73 287.0
27 TraesCS7A01G167900 chr6A 100.000 125 0 0 4491 4615 188742354 188742478 1.100000e-56 231.0
28 TraesCS7A01G167900 chr6A 85.039 127 17 2 1252 1377 474333558 474333433 1.480000e-25 128.0
29 TraesCS7A01G167900 chr6A 100.000 29 0 0 4264 4292 554307759 554307731 3.000000e-03 54.7
30 TraesCS7A01G167900 chr1B 95.623 297 12 1 1 297 12756855 12757150 4.590000e-130 475.0
31 TraesCS7A01G167900 chr1B 94.684 301 14 2 1 301 588322423 588322721 2.770000e-127 466.0
32 TraesCS7A01G167900 chr6D 78.526 475 80 17 2492 2958 413271006 413270546 4.970000e-75 292.0
33 TraesCS7A01G167900 chr6D 86.179 123 15 2 1252 1373 335068116 335067995 1.150000e-26 132.0
34 TraesCS7A01G167900 chr4A 100.000 126 0 0 4490 4615 8592557 8592682 3.050000e-57 233.0
35 TraesCS7A01G167900 chr1D 100.000 125 0 0 4490 4614 481558213 481558089 1.100000e-56 231.0
36 TraesCS7A01G167900 chr1D 91.071 56 5 0 3961 4016 453205151 453205206 5.450000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G167900 chr7A 124066724 124071795 5071 True 9367.000000 9367 100.000000 1 5072 1 chr7A.!!$R2 5071
1 TraesCS7A01G167900 chr7D 119564186 119569692 5506 True 2293.333333 6255 93.591000 298 5027 3 chr7D.!!$R1 4729
2 TraesCS7A01G167900 chr7B 80658712 80663319 4607 True 2127.000000 3659 92.069333 321 5038 3 chr7B.!!$R2 4717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.0 0.00 0.0 0.0 2.69 F
311 312 0.036732 TTCGCTCATCCAGGCTTTGT 59.963 50.0 0.00 0.0 0.0 2.83 F
554 555 0.101219 CCCGCACCGGTTACTACTAC 59.899 60.0 2.97 0.0 46.8 2.73 F
2385 2453 0.321564 CCTCGTCAATGGCCTGAACA 60.322 55.0 3.32 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1238 1284 0.106769 ACATCCTGCCAACACACACA 60.107 50.0 0.00 0.00 0.00 3.72 R
1482 1528 0.958091 CAACAAACAGATTCCGCCCA 59.042 50.0 0.00 0.00 0.00 5.36 R
2471 2542 0.037975 ACACCCGACACCGTTATGTC 60.038 55.0 2.47 2.47 44.68 3.06 R
4254 4376 0.389556 GGACGGACGGAAGGAGAAAC 60.390 60.0 0.00 0.00 0.00 2.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
21 22 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
22 23 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
23 24 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
24 25 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
25 26 0.387367 AGTACAGACACAAGCGCTCG 60.387 55.000 12.06 0.00 0.00 5.03
26 27 0.663568 GTACAGACACAAGCGCTCGT 60.664 55.000 12.06 0.82 0.00 4.18
27 28 0.876399 TACAGACACAAGCGCTCGTA 59.124 50.000 12.06 2.49 0.00 3.43
28 29 0.243907 ACAGACACAAGCGCTCGTAT 59.756 50.000 12.06 0.00 0.00 3.06
29 30 1.471287 ACAGACACAAGCGCTCGTATA 59.529 47.619 12.06 0.00 0.00 1.47
30 31 2.099263 ACAGACACAAGCGCTCGTATAT 59.901 45.455 12.06 0.00 0.00 0.86
31 32 3.314357 ACAGACACAAGCGCTCGTATATA 59.686 43.478 12.06 0.00 0.00 0.86
32 33 3.664486 CAGACACAAGCGCTCGTATATAC 59.336 47.826 12.06 2.53 0.00 1.47
45 46 3.739494 CGTATATACGCGCATACACTCA 58.261 45.455 21.35 0.00 43.14 3.41
46 47 3.537225 CGTATATACGCGCATACACTCAC 59.463 47.826 21.35 6.78 43.14 3.51
47 48 2.410785 TATACGCGCATACACTCACC 57.589 50.000 5.73 0.00 0.00 4.02
48 49 0.249322 ATACGCGCATACACTCACCC 60.249 55.000 5.73 0.00 0.00 4.61
49 50 2.287457 TACGCGCATACACTCACCCC 62.287 60.000 5.73 0.00 0.00 4.95
50 51 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
51 52 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
52 53 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
53 54 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
54 55 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
55 56 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
56 57 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
57 58 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
58 59 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
59 60 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
60 61 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
61 62 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
62 63 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
63 64 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
64 65 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
65 66 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
66 67 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
67 68 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
68 69 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
69 70 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
70 71 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
71 72 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
74 75 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
75 76 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
76 77 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
77 78 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
78 79 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
79 80 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
80 81 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
81 82 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
82 83 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
83 84 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
84 85 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
85 86 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
86 87 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
87 88 0.759346 CACCCTACCCCTATGAGCAC 59.241 60.000 0.00 0.00 0.00 4.40
88 89 0.400093 ACCCTACCCCTATGAGCACC 60.400 60.000 0.00 0.00 0.00 5.01
89 90 0.104934 CCCTACCCCTATGAGCACCT 60.105 60.000 0.00 0.00 0.00 4.00
90 91 1.343069 CCTACCCCTATGAGCACCTC 58.657 60.000 0.00 0.00 0.00 3.85
91 92 1.343069 CTACCCCTATGAGCACCTCC 58.657 60.000 0.00 0.00 0.00 4.30
92 93 0.469331 TACCCCTATGAGCACCTCCG 60.469 60.000 0.00 0.00 0.00 4.63
93 94 1.457643 CCCCTATGAGCACCTCCGA 60.458 63.158 0.00 0.00 0.00 4.55
94 95 1.048724 CCCCTATGAGCACCTCCGAA 61.049 60.000 0.00 0.00 0.00 4.30
95 96 0.830648 CCCTATGAGCACCTCCGAAA 59.169 55.000 0.00 0.00 0.00 3.46
96 97 1.202580 CCCTATGAGCACCTCCGAAAG 60.203 57.143 0.00 0.00 0.00 2.62
97 98 1.757118 CCTATGAGCACCTCCGAAAGA 59.243 52.381 0.00 0.00 0.00 2.52
98 99 2.482142 CCTATGAGCACCTCCGAAAGAC 60.482 54.545 0.00 0.00 0.00 3.01
99 100 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
100 101 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
101 102 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
102 103 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
103 104 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
104 105 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
105 106 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
106 107 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
107 108 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
108 109 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
109 110 2.383527 CGAAAGACTGAGCCGGCAC 61.384 63.158 31.54 24.60 0.00 5.01
110 111 1.301716 GAAAGACTGAGCCGGCACA 60.302 57.895 31.54 28.20 0.00 4.57
111 112 0.674895 GAAAGACTGAGCCGGCACAT 60.675 55.000 31.54 17.99 0.00 3.21
112 113 0.674895 AAAGACTGAGCCGGCACATC 60.675 55.000 31.54 24.45 0.00 3.06
113 114 1.830587 AAGACTGAGCCGGCACATCA 61.831 55.000 31.54 22.44 0.00 3.07
114 115 1.153289 GACTGAGCCGGCACATCAT 60.153 57.895 31.54 16.80 0.00 2.45
115 116 1.153289 ACTGAGCCGGCACATCATC 60.153 57.895 31.54 16.99 0.00 2.92
116 117 1.145598 CTGAGCCGGCACATCATCT 59.854 57.895 31.54 4.27 0.00 2.90
117 118 0.463295 CTGAGCCGGCACATCATCTT 60.463 55.000 31.54 3.33 0.00 2.40
118 119 0.745486 TGAGCCGGCACATCATCTTG 60.745 55.000 31.54 0.00 0.00 3.02
119 120 0.462581 GAGCCGGCACATCATCTTGA 60.463 55.000 31.54 0.00 0.00 3.02
120 121 0.463295 AGCCGGCACATCATCTTGAG 60.463 55.000 31.54 0.00 0.00 3.02
121 122 0.462581 GCCGGCACATCATCTTGAGA 60.463 55.000 24.80 0.00 0.00 3.27
122 123 1.813092 GCCGGCACATCATCTTGAGAT 60.813 52.381 24.80 0.00 34.56 2.75
123 124 2.569059 CCGGCACATCATCTTGAGATT 58.431 47.619 0.00 0.00 31.21 2.40
124 125 2.947652 CCGGCACATCATCTTGAGATTT 59.052 45.455 0.00 0.00 31.21 2.17
125 126 4.129380 CCGGCACATCATCTTGAGATTTA 58.871 43.478 0.00 0.00 31.21 1.40
126 127 4.024556 CCGGCACATCATCTTGAGATTTAC 60.025 45.833 0.00 0.00 31.21 2.01
127 128 4.318333 CGGCACATCATCTTGAGATTTACG 60.318 45.833 0.00 0.00 31.21 3.18
128 129 4.811024 GGCACATCATCTTGAGATTTACGA 59.189 41.667 0.00 0.00 31.21 3.43
129 130 5.294306 GGCACATCATCTTGAGATTTACGAA 59.706 40.000 0.00 0.00 31.21 3.85
130 131 6.417327 GCACATCATCTTGAGATTTACGAAG 58.583 40.000 0.00 0.00 31.21 3.79
131 132 6.036517 GCACATCATCTTGAGATTTACGAAGT 59.963 38.462 0.00 0.00 37.29 3.01
132 133 7.616673 CACATCATCTTGAGATTTACGAAGTC 58.383 38.462 0.00 0.00 35.39 3.01
133 134 7.276438 CACATCATCTTGAGATTTACGAAGTCA 59.724 37.037 0.00 0.00 35.39 3.41
134 135 7.276658 ACATCATCTTGAGATTTACGAAGTCAC 59.723 37.037 0.00 0.00 35.39 3.67
135 136 6.925211 TCATCTTGAGATTTACGAAGTCACT 58.075 36.000 0.00 0.00 35.39 3.41
136 137 6.808704 TCATCTTGAGATTTACGAAGTCACTG 59.191 38.462 0.00 0.00 35.39 3.66
137 138 6.085555 TCTTGAGATTTACGAAGTCACTGT 57.914 37.500 0.00 0.00 43.93 3.55
138 139 7.210718 TCTTGAGATTTACGAAGTCACTGTA 57.789 36.000 0.00 0.00 43.93 2.74
139 140 7.306213 TCTTGAGATTTACGAAGTCACTGTAG 58.694 38.462 0.00 0.00 43.93 2.74
140 141 5.950883 TGAGATTTACGAAGTCACTGTAGG 58.049 41.667 0.00 0.00 43.93 3.18
141 142 4.745649 AGATTTACGAAGTCACTGTAGGC 58.254 43.478 0.00 0.00 43.93 3.93
142 143 2.624316 TTACGAAGTCACTGTAGGCG 57.376 50.000 0.00 0.00 43.93 5.52
143 144 0.169672 TACGAAGTCACTGTAGGCGC 59.830 55.000 0.00 0.00 43.93 6.53
144 145 1.805945 CGAAGTCACTGTAGGCGCC 60.806 63.158 21.89 21.89 0.00 6.53
145 146 1.592223 GAAGTCACTGTAGGCGCCT 59.408 57.895 34.85 34.85 0.00 5.52
146 147 0.458716 GAAGTCACTGTAGGCGCCTC 60.459 60.000 36.73 24.38 0.00 4.70
147 148 2.202623 GTCACTGTAGGCGCCTCG 60.203 66.667 36.73 24.39 0.00 4.63
148 149 2.675423 TCACTGTAGGCGCCTCGT 60.675 61.111 36.73 25.10 0.00 4.18
149 150 2.202623 CACTGTAGGCGCCTCGTC 60.203 66.667 36.73 24.11 0.00 4.20
150 151 3.812019 ACTGTAGGCGCCTCGTCG 61.812 66.667 36.73 21.73 36.23 5.12
151 152 3.812019 CTGTAGGCGCCTCGTCGT 61.812 66.667 36.73 11.27 36.23 4.34
152 153 3.736482 CTGTAGGCGCCTCGTCGTC 62.736 68.421 36.73 17.21 36.23 4.20
153 154 4.883300 GTAGGCGCCTCGTCGTCG 62.883 72.222 36.73 0.00 39.34 5.12
174 175 2.964343 GGGAACGTCTCCTCTCACT 58.036 57.895 13.94 0.00 44.68 3.41
175 176 0.528470 GGGAACGTCTCCTCTCACTG 59.472 60.000 13.94 0.00 44.68 3.66
176 177 1.535833 GGAACGTCTCCTCTCACTGA 58.464 55.000 8.87 0.00 41.61 3.41
177 178 1.887198 GGAACGTCTCCTCTCACTGAA 59.113 52.381 8.87 0.00 41.61 3.02
178 179 2.296471 GGAACGTCTCCTCTCACTGAAA 59.704 50.000 8.87 0.00 41.61 2.69
179 180 3.570559 GAACGTCTCCTCTCACTGAAAG 58.429 50.000 0.00 0.00 42.29 2.62
180 181 1.271102 ACGTCTCCTCTCACTGAAAGC 59.729 52.381 0.00 0.00 37.60 3.51
181 182 1.730772 CGTCTCCTCTCACTGAAAGCG 60.731 57.143 0.00 0.00 37.60 4.68
182 183 0.244994 TCTCCTCTCACTGAAAGCGC 59.755 55.000 0.00 0.00 37.60 5.92
183 184 0.037882 CTCCTCTCACTGAAAGCGCA 60.038 55.000 11.47 0.00 37.60 6.09
184 185 0.610174 TCCTCTCACTGAAAGCGCAT 59.390 50.000 11.47 0.00 37.60 4.73
185 186 1.005340 CCTCTCACTGAAAGCGCATC 58.995 55.000 11.47 8.39 37.60 3.91
186 187 0.644331 CTCTCACTGAAAGCGCATCG 59.356 55.000 11.47 6.82 37.60 3.84
197 198 2.588877 CGCATCGCCGGAAATCCT 60.589 61.111 5.05 0.00 0.00 3.24
198 199 2.885676 CGCATCGCCGGAAATCCTG 61.886 63.158 5.05 0.00 0.00 3.86
199 200 1.523711 GCATCGCCGGAAATCCTGA 60.524 57.895 5.05 0.00 0.00 3.86
200 201 1.095228 GCATCGCCGGAAATCCTGAA 61.095 55.000 5.05 0.00 0.00 3.02
201 202 1.378531 CATCGCCGGAAATCCTGAAA 58.621 50.000 5.05 0.00 0.00 2.69
202 203 1.949525 CATCGCCGGAAATCCTGAAAT 59.050 47.619 5.05 0.00 0.00 2.17
203 204 2.992124 TCGCCGGAAATCCTGAAATA 57.008 45.000 5.05 0.00 0.00 1.40
204 205 3.269538 TCGCCGGAAATCCTGAAATAA 57.730 42.857 5.05 0.00 0.00 1.40
205 206 3.611970 TCGCCGGAAATCCTGAAATAAA 58.388 40.909 5.05 0.00 0.00 1.40
206 207 4.204012 TCGCCGGAAATCCTGAAATAAAT 58.796 39.130 5.05 0.00 0.00 1.40
207 208 4.274950 TCGCCGGAAATCCTGAAATAAATC 59.725 41.667 5.05 0.00 0.00 2.17
208 209 4.556699 CGCCGGAAATCCTGAAATAAATCC 60.557 45.833 5.05 0.00 0.00 3.01
209 210 4.340950 GCCGGAAATCCTGAAATAAATCCA 59.659 41.667 5.05 0.00 0.00 3.41
210 211 5.507985 GCCGGAAATCCTGAAATAAATCCAG 60.508 44.000 5.05 0.00 0.00 3.86
211 212 5.594317 CCGGAAATCCTGAAATAAATCCAGT 59.406 40.000 0.00 0.00 0.00 4.00
212 213 6.770785 CCGGAAATCCTGAAATAAATCCAGTA 59.229 38.462 0.00 0.00 0.00 2.74
213 214 7.284489 CCGGAAATCCTGAAATAAATCCAGTAA 59.716 37.037 0.00 0.00 0.00 2.24
214 215 8.682710 CGGAAATCCTGAAATAAATCCAGTAAA 58.317 33.333 0.00 0.00 0.00 2.01
221 222 9.398170 CCTGAAATAAATCCAGTAAATAATGCG 57.602 33.333 0.00 0.00 0.00 4.73
224 225 9.118236 GAAATAAATCCAGTAAATAATGCGAGC 57.882 33.333 0.00 0.00 0.00 5.03
225 226 7.744087 ATAAATCCAGTAAATAATGCGAGCA 57.256 32.000 0.00 0.00 0.00 4.26
226 227 5.424121 AATCCAGTAAATAATGCGAGCAC 57.576 39.130 0.00 0.00 0.00 4.40
227 228 3.202906 TCCAGTAAATAATGCGAGCACC 58.797 45.455 0.00 0.00 0.00 5.01
228 229 2.942376 CCAGTAAATAATGCGAGCACCA 59.058 45.455 0.00 0.00 0.00 4.17
229 230 3.002656 CCAGTAAATAATGCGAGCACCAG 59.997 47.826 0.00 0.00 0.00 4.00
230 231 3.002656 CAGTAAATAATGCGAGCACCAGG 59.997 47.826 0.00 0.00 0.00 4.45
231 232 2.418368 AAATAATGCGAGCACCAGGA 57.582 45.000 0.00 0.00 0.00 3.86
232 233 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
233 234 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
234 235 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
235 236 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
236 237 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
237 238 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
238 239 1.098050 GCGAGCACCAGGATTTGAAT 58.902 50.000 0.00 0.00 0.00 2.57
239 240 1.064654 GCGAGCACCAGGATTTGAATC 59.935 52.381 0.00 0.00 34.66 2.52
250 251 3.874392 GATTTGAATCCTGGTGGGTTG 57.126 47.619 0.00 0.00 36.67 3.77
251 252 2.008242 TTTGAATCCTGGTGGGTTGG 57.992 50.000 0.00 0.00 36.67 3.77
252 253 0.114168 TTGAATCCTGGTGGGTTGGG 59.886 55.000 0.00 0.00 36.67 4.12
253 254 1.000359 GAATCCTGGTGGGTTGGGG 60.000 63.158 0.00 0.00 36.67 4.96
254 255 1.467190 AATCCTGGTGGGTTGGGGA 60.467 57.895 0.00 0.00 34.88 4.81
255 256 0.855400 AATCCTGGTGGGTTGGGGAT 60.855 55.000 0.00 0.00 34.88 3.85
256 257 1.583784 ATCCTGGTGGGTTGGGGATG 61.584 60.000 0.00 0.00 35.72 3.51
257 258 2.362889 CTGGTGGGTTGGGGATGC 60.363 66.667 0.00 0.00 0.00 3.91
258 259 3.963124 CTGGTGGGTTGGGGATGCC 62.963 68.421 0.00 0.00 0.00 4.40
259 260 3.991318 GGTGGGTTGGGGATGCCA 61.991 66.667 5.30 0.00 0.00 4.92
260 261 2.679996 GTGGGTTGGGGATGCCAC 60.680 66.667 5.30 0.00 0.00 5.01
261 262 2.863484 TGGGTTGGGGATGCCACT 60.863 61.111 5.30 0.00 0.00 4.00
262 263 2.362889 GGGTTGGGGATGCCACTG 60.363 66.667 5.30 0.00 0.00 3.66
263 264 2.440599 GGTTGGGGATGCCACTGT 59.559 61.111 5.30 0.00 0.00 3.55
264 265 1.678970 GGTTGGGGATGCCACTGTC 60.679 63.158 5.30 0.00 0.00 3.51
265 266 1.678970 GTTGGGGATGCCACTGTCC 60.679 63.158 5.30 0.00 0.00 4.02
266 267 2.159490 TTGGGGATGCCACTGTCCA 61.159 57.895 5.30 0.00 36.19 4.02
267 268 2.044946 GGGGATGCCACTGTCCAC 60.045 66.667 5.30 0.00 36.19 4.02
268 269 2.044946 GGGATGCCACTGTCCACC 60.045 66.667 0.00 0.00 36.19 4.61
269 270 2.606587 GGGATGCCACTGTCCACCT 61.607 63.158 0.00 0.00 36.19 4.00
270 271 1.271840 GGGATGCCACTGTCCACCTA 61.272 60.000 0.00 0.00 36.19 3.08
271 272 0.618458 GGATGCCACTGTCCACCTAA 59.382 55.000 0.00 0.00 34.57 2.69
272 273 1.679032 GGATGCCACTGTCCACCTAAC 60.679 57.143 0.00 0.00 34.57 2.34
273 274 0.328258 ATGCCACTGTCCACCTAACC 59.672 55.000 0.00 0.00 0.00 2.85
274 275 1.057275 TGCCACTGTCCACCTAACCA 61.057 55.000 0.00 0.00 0.00 3.67
275 276 0.328258 GCCACTGTCCACCTAACCAT 59.672 55.000 0.00 0.00 0.00 3.55
276 277 1.679032 GCCACTGTCCACCTAACCATC 60.679 57.143 0.00 0.00 0.00 3.51
277 278 1.909302 CCACTGTCCACCTAACCATCT 59.091 52.381 0.00 0.00 0.00 2.90
278 279 2.093447 CCACTGTCCACCTAACCATCTC 60.093 54.545 0.00 0.00 0.00 2.75
279 280 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
280 281 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
281 282 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
282 283 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
283 284 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
284 285 3.054361 GTCCACCTAACCATCTCAACCAT 60.054 47.826 0.00 0.00 0.00 3.55
285 286 4.163458 GTCCACCTAACCATCTCAACCATA 59.837 45.833 0.00 0.00 0.00 2.74
286 287 4.408921 TCCACCTAACCATCTCAACCATAG 59.591 45.833 0.00 0.00 0.00 2.23
287 288 4.444876 CCACCTAACCATCTCAACCATAGG 60.445 50.000 0.00 0.00 35.62 2.57
288 289 4.164221 CACCTAACCATCTCAACCATAGGT 59.836 45.833 0.00 0.00 41.66 3.08
309 310 1.065199 TGATTCGCTCATCCAGGCTTT 60.065 47.619 0.00 0.00 0.00 3.51
311 312 0.036732 TTCGCTCATCCAGGCTTTGT 59.963 50.000 0.00 0.00 0.00 2.83
312 313 0.036732 TCGCTCATCCAGGCTTTGTT 59.963 50.000 0.00 0.00 0.00 2.83
319 320 1.607467 CCAGGCTTTGTTGGAGGGG 60.607 63.158 0.00 0.00 36.55 4.79
448 449 1.199097 GAGCGCCAGTCTATCTAGAGC 59.801 57.143 2.29 0.00 32.01 4.09
468 469 1.435515 CGGAGAGAGAAAGCGAGGG 59.564 63.158 0.00 0.00 0.00 4.30
470 471 1.681486 GGAGAGAGAAAGCGAGGGGG 61.681 65.000 0.00 0.00 0.00 5.40
471 472 0.684805 GAGAGAGAAAGCGAGGGGGA 60.685 60.000 0.00 0.00 0.00 4.81
552 553 3.010413 GCCCGCACCGGTTACTACT 62.010 63.158 2.97 0.00 46.80 2.57
553 554 1.666209 GCCCGCACCGGTTACTACTA 61.666 60.000 2.97 0.00 46.80 1.82
554 555 0.101219 CCCGCACCGGTTACTACTAC 59.899 60.000 2.97 0.00 46.80 2.73
555 556 1.098050 CCGCACCGGTTACTACTACT 58.902 55.000 2.97 0.00 42.73 2.57
556 557 1.064654 CCGCACCGGTTACTACTACTC 59.935 57.143 2.97 0.00 42.73 2.59
557 558 2.012673 CGCACCGGTTACTACTACTCT 58.987 52.381 2.97 0.00 0.00 3.24
558 559 3.198068 CGCACCGGTTACTACTACTCTA 58.802 50.000 2.97 0.00 0.00 2.43
559 560 3.001736 CGCACCGGTTACTACTACTCTAC 59.998 52.174 2.97 0.00 0.00 2.59
571 575 6.883744 ACTACTACTCTACTAGTACCACCAC 58.116 44.000 0.00 0.00 39.80 4.16
572 576 5.109500 ACTACTCTACTAGTACCACCACC 57.891 47.826 0.00 0.00 39.80 4.61
612 618 1.379176 TGGAGTGGAGAGAGCGAGG 60.379 63.158 0.00 0.00 0.00 4.63
630 636 0.832559 GGAGGATAGGGACGAAGGGG 60.833 65.000 0.00 0.00 0.00 4.79
645 651 1.004891 GGGGGTGAGGAGGGAAGAT 59.995 63.158 0.00 0.00 0.00 2.40
649 655 2.360423 GGGGTGAGGAGGGAAGATAGAA 60.360 54.545 0.00 0.00 0.00 2.10
651 657 3.977326 GGGTGAGGAGGGAAGATAGAAAT 59.023 47.826 0.00 0.00 0.00 2.17
808 828 2.607892 GCAACGCCAGCGGATATCC 61.608 63.158 17.33 12.14 44.69 2.59
890 914 1.022982 GGCGCGTATAAATAGGCCCC 61.023 60.000 8.43 5.99 40.09 5.80
931 956 2.667536 CAGCGCAGAGTGCCAAGT 60.668 61.111 11.47 0.00 41.12 3.16
938 968 1.707632 CAGAGTGCCAAGTTCTCTCG 58.292 55.000 0.00 0.00 36.57 4.04
940 970 1.689273 AGAGTGCCAAGTTCTCTCGTT 59.311 47.619 0.00 0.00 33.98 3.85
949 979 2.172679 AGTTCTCTCGTTCTTCCTCCC 58.827 52.381 0.00 0.00 0.00 4.30
964 994 2.367377 CCCCCTGCTCATCCTCCA 60.367 66.667 0.00 0.00 0.00 3.86
978 1008 0.396974 CCTCCAGTCCTCTCCTCCTG 60.397 65.000 0.00 0.00 0.00 3.86
1237 1283 1.138036 TAATGGCGTCTGTCGTCCG 59.862 57.895 0.00 0.00 44.19 4.79
1238 1284 1.588824 TAATGGCGTCTGTCGTCCGT 61.589 55.000 0.00 0.00 44.19 4.69
1239 1285 3.626680 ATGGCGTCTGTCGTCCGTG 62.627 63.158 0.00 0.00 44.19 4.94
1240 1286 4.338539 GGCGTCTGTCGTCCGTGT 62.339 66.667 0.00 0.00 42.13 4.49
1373 1419 2.743752 CCGCACGCAGATGAAGGTG 61.744 63.158 0.00 0.00 0.00 4.00
1378 1424 0.671781 ACGCAGATGAAGGTGAGTGC 60.672 55.000 0.00 0.00 0.00 4.40
1482 1528 5.200483 TGGTCTTGAATTGTTTCCTGAACT 58.800 37.500 0.00 0.00 39.08 3.01
1525 1571 3.896133 GCATGGACATGGCAGGCG 61.896 66.667 13.63 0.00 39.16 5.52
1618 1664 1.372087 GGGAGGCGCTGAAGAATGTG 61.372 60.000 7.64 0.00 0.00 3.21
1801 1847 1.135257 CAGATGAACGTCTCCTCGCTT 60.135 52.381 0.00 0.00 0.00 4.68
1967 2031 3.127533 CTGAAAAGGAGCGCCCCG 61.128 66.667 2.29 0.00 34.66 5.73
1968 2032 3.605749 CTGAAAAGGAGCGCCCCGA 62.606 63.158 2.29 0.00 34.66 5.14
1969 2033 3.125573 GAAAAGGAGCGCCCCGAC 61.126 66.667 2.29 0.00 34.66 4.79
1970 2034 3.894547 GAAAAGGAGCGCCCCGACA 62.895 63.158 2.29 0.00 34.66 4.35
2085 2149 1.001269 AGACCATCGACGTCCAGGA 60.001 57.895 18.96 8.13 0.00 3.86
2250 2315 2.738480 CCCTCCAACCGTTCGACA 59.262 61.111 0.00 0.00 0.00 4.35
2272 2340 3.881688 AGATTGCCCAATTCTTGATCGAG 59.118 43.478 3.24 3.24 0.00 4.04
2288 2356 4.156190 TGATCGAGTAGTTCTGAACTGACC 59.844 45.833 28.46 17.38 42.84 4.02
2299 2367 0.663153 GAACTGACCGTTTGCTGCTT 59.337 50.000 0.00 0.00 35.56 3.91
2385 2453 0.321564 CCTCGTCAATGGCCTGAACA 60.322 55.000 3.32 0.00 0.00 3.18
2466 2537 4.837896 ATCTTAATCAGTCGCGATCTGA 57.162 40.909 29.90 29.90 44.37 3.27
2467 2538 4.216366 TCTTAATCAGTCGCGATCTGAG 57.784 45.455 30.54 22.25 43.66 3.35
2468 2539 3.628032 TCTTAATCAGTCGCGATCTGAGT 59.372 43.478 30.54 30.09 43.66 3.41
2469 2540 2.483583 AATCAGTCGCGATCTGAGTC 57.516 50.000 30.54 13.20 43.66 3.36
2470 2541 1.674359 ATCAGTCGCGATCTGAGTCT 58.326 50.000 30.54 19.60 43.66 3.24
2471 2542 0.729690 TCAGTCGCGATCTGAGTCTG 59.270 55.000 26.61 20.46 37.07 3.51
2484 2555 3.190744 TCTGAGTCTGACATAACGGTGTC 59.809 47.826 10.88 9.93 46.75 3.67
2723 2794 1.143305 CAAGGTCAGTCAGCAACGAG 58.857 55.000 0.00 0.00 0.00 4.18
2733 2804 4.072088 GCAACGAGCCAACGACCG 62.072 66.667 0.00 0.00 37.23 4.79
3034 3108 2.122783 TAAACCCCAAGCAAGATCGG 57.877 50.000 0.00 0.00 0.00 4.18
3075 3177 9.661563 TTGTTTTACTAACTACGATGATGGATT 57.338 29.630 0.00 0.00 0.00 3.01
3448 3566 2.593148 ACACGCCATTGACGCCAA 60.593 55.556 0.00 0.00 36.61 4.52
3459 3577 1.141019 GACGCCAAGTATCTCGCCA 59.859 57.895 0.00 0.00 0.00 5.69
3467 3585 1.668419 AGTATCTCGCCATTGTTGCC 58.332 50.000 0.00 0.00 0.00 4.52
3471 3589 3.951655 CTCGCCATTGTTGCCGCAC 62.952 63.158 0.00 0.00 0.00 5.34
3577 3695 1.933853 CTGCTGCGGGTAATGACTAAC 59.066 52.381 0.00 0.00 0.00 2.34
3631 3749 3.577667 TGAATTGCTGCATTAACACTGC 58.422 40.909 1.84 0.00 40.10 4.40
3662 3780 1.134818 TGCGTTAATGGCGTCTGATCT 60.135 47.619 0.00 0.00 0.00 2.75
3663 3781 1.258982 GCGTTAATGGCGTCTGATCTG 59.741 52.381 0.00 0.00 0.00 2.90
3664 3782 2.809446 CGTTAATGGCGTCTGATCTGA 58.191 47.619 0.00 0.00 0.00 3.27
3665 3783 3.384668 CGTTAATGGCGTCTGATCTGAT 58.615 45.455 5.52 0.00 0.00 2.90
3666 3784 3.426859 CGTTAATGGCGTCTGATCTGATC 59.573 47.826 10.72 10.72 0.00 2.92
3691 3810 0.240945 AACTTTTGAATCGCAGGCCG 59.759 50.000 0.00 0.00 38.61 6.13
3697 3816 4.087892 AATCGCAGGCCGTGAGCT 62.088 61.111 14.46 0.00 43.05 4.09
3708 3827 2.202544 GTGAGCTCGAGCCAGACG 60.203 66.667 32.94 0.00 43.38 4.18
3760 3879 3.753434 AGGAGAGCTGCACGGACG 61.753 66.667 1.02 0.00 0.00 4.79
3784 3903 2.436109 GGTGCTCCATGGTGGTGT 59.564 61.111 12.58 0.00 39.03 4.16
4129 4251 5.793030 AAGCTAGAGTGTTTGTCTAGTGT 57.207 39.130 8.53 0.00 43.77 3.55
4140 4262 5.163591 TGTTTGTCTAGTGTTTCTGACGAGA 60.164 40.000 0.00 0.00 31.63 4.04
4144 4266 4.004314 TCTAGTGTTTCTGACGAGAGAGG 58.996 47.826 0.00 0.00 0.00 3.69
4145 4267 2.865079 AGTGTTTCTGACGAGAGAGGA 58.135 47.619 0.00 0.00 0.00 3.71
4146 4268 2.817258 AGTGTTTCTGACGAGAGAGGAG 59.183 50.000 0.00 0.00 0.00 3.69
4147 4269 2.094957 GTGTTTCTGACGAGAGAGGAGG 60.095 54.545 0.00 0.00 0.00 4.30
4236 4358 0.737715 ATCTCAAGCCGACGCAACTC 60.738 55.000 0.00 0.00 37.52 3.01
4237 4359 1.373497 CTCAAGCCGACGCAACTCT 60.373 57.895 0.00 0.00 37.52 3.24
4254 4376 5.114780 CAACTCTCTCTCTCTCTCTCTCTG 58.885 50.000 0.00 0.00 0.00 3.35
4308 4439 0.250234 CATCCACCGTCACACCATCT 59.750 55.000 0.00 0.00 0.00 2.90
4313 4444 2.002586 CACCGTCACACCATCTCATTC 58.997 52.381 0.00 0.00 0.00 2.67
4329 4460 1.869767 CATTCCATGTCTAGGCTTCGC 59.130 52.381 0.00 0.00 0.00 4.70
4357 4488 5.291178 TCGTCAGTCTTCGTTTTGGATTTA 58.709 37.500 0.00 0.00 0.00 1.40
4358 4489 5.929992 TCGTCAGTCTTCGTTTTGGATTTAT 59.070 36.000 0.00 0.00 0.00 1.40
4359 4490 6.090358 TCGTCAGTCTTCGTTTTGGATTTATC 59.910 38.462 0.00 0.00 0.00 1.75
4360 4491 6.090898 CGTCAGTCTTCGTTTTGGATTTATCT 59.909 38.462 0.00 0.00 0.00 1.98
4384 4515 9.834628 TCTTTAGCGTAATTTTACAGGATTTTG 57.165 29.630 1.76 0.00 33.28 2.44
4385 4516 9.620660 CTTTAGCGTAATTTTACAGGATTTTGT 57.379 29.630 1.76 0.00 33.28 2.83
4462 4605 3.628942 CAGTCAGAGTCAGAGAGATCAGG 59.371 52.174 0.00 0.00 0.00 3.86
4490 4633 3.773860 AAGAGAGATATGATAGGCGCG 57.226 47.619 0.00 0.00 0.00 6.86
4491 4634 2.020720 AGAGAGATATGATAGGCGCGG 58.979 52.381 8.83 0.00 0.00 6.46
4492 4635 2.017782 GAGAGATATGATAGGCGCGGA 58.982 52.381 8.83 0.00 0.00 5.54
4493 4636 1.746220 AGAGATATGATAGGCGCGGAC 59.254 52.381 8.83 0.00 0.00 4.79
4494 4637 1.746220 GAGATATGATAGGCGCGGACT 59.254 52.381 8.83 0.00 0.00 3.85
4495 4638 1.746220 AGATATGATAGGCGCGGACTC 59.254 52.381 8.83 0.00 0.00 3.36
4496 4639 0.452184 ATATGATAGGCGCGGACTCG 59.548 55.000 8.83 0.00 39.81 4.18
4497 4640 1.583495 TATGATAGGCGCGGACTCGG 61.583 60.000 8.83 0.00 36.79 4.63
4507 4650 3.462678 GGACTCGGCTCCCCTGAC 61.463 72.222 0.00 0.00 0.00 3.51
4508 4651 3.827898 GACTCGGCTCCCCTGACG 61.828 72.222 0.00 0.00 40.31 4.35
4509 4652 4.680537 ACTCGGCTCCCCTGACGT 62.681 66.667 0.00 0.00 39.83 4.34
4510 4653 2.439701 CTCGGCTCCCCTGACGTA 60.440 66.667 0.00 0.00 39.83 3.57
4511 4654 2.753043 TCGGCTCCCCTGACGTAC 60.753 66.667 0.00 0.00 39.83 3.67
4512 4655 2.754658 CGGCTCCCCTGACGTACT 60.755 66.667 0.00 0.00 33.11 2.73
4513 4656 2.893398 GGCTCCCCTGACGTACTG 59.107 66.667 0.00 0.00 0.00 2.74
4514 4657 2.184579 GCTCCCCTGACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
4515 4658 2.646175 GCTCCCCTGACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
4516 4659 1.513158 CTCCCCTGACGTACTGCAG 59.487 63.158 13.48 13.48 0.00 4.41
4519 4662 3.377656 CCTGACGTACTGCAGGGT 58.622 61.111 19.93 12.80 46.24 4.34
4520 4663 1.079819 CCTGACGTACTGCAGGGTG 60.080 63.158 19.93 9.21 46.24 4.61
4521 4664 1.738099 CTGACGTACTGCAGGGTGC 60.738 63.158 19.93 0.92 45.29 5.01
4530 4673 2.985847 GCAGGGTGCAGTTGGGTC 60.986 66.667 0.00 0.00 44.26 4.46
4531 4674 2.515398 CAGGGTGCAGTTGGGTCA 59.485 61.111 0.00 0.00 0.00 4.02
4532 4675 1.898574 CAGGGTGCAGTTGGGTCAC 60.899 63.158 0.00 0.00 0.00 3.67
4533 4676 2.078665 AGGGTGCAGTTGGGTCACT 61.079 57.895 0.00 0.00 0.00 3.41
4534 4677 1.898574 GGGTGCAGTTGGGTCACTG 60.899 63.158 0.00 0.00 46.15 3.66
4535 4678 1.148273 GGTGCAGTTGGGTCACTGA 59.852 57.895 5.01 0.00 46.29 3.41
4536 4679 1.166531 GGTGCAGTTGGGTCACTGAC 61.167 60.000 5.01 0.00 46.29 3.51
4537 4680 0.463654 GTGCAGTTGGGTCACTGACA 60.464 55.000 11.34 0.35 46.29 3.58
4538 4681 0.179048 TGCAGTTGGGTCACTGACAG 60.179 55.000 11.34 0.00 46.29 3.51
4539 4682 0.886490 GCAGTTGGGTCACTGACAGG 60.886 60.000 11.34 0.00 46.29 4.00
4540 4683 0.469917 CAGTTGGGTCACTGACAGGT 59.530 55.000 11.34 0.00 46.29 4.00
4541 4684 0.469917 AGTTGGGTCACTGACAGGTG 59.530 55.000 11.34 3.26 38.44 4.00
4542 4685 0.535102 GTTGGGTCACTGACAGGTGG 60.535 60.000 11.34 0.00 37.75 4.61
4543 4686 1.705002 TTGGGTCACTGACAGGTGGG 61.705 60.000 11.34 0.00 37.75 4.61
4544 4687 2.032681 GGTCACTGACAGGTGGGC 59.967 66.667 11.34 0.00 37.75 5.36
4545 4688 2.032681 GTCACTGACAGGTGGGCC 59.967 66.667 7.51 0.00 37.75 5.80
4546 4689 2.447572 TCACTGACAGGTGGGCCA 60.448 61.111 0.00 0.00 37.75 5.36
4547 4690 2.075566 TCACTGACAGGTGGGCCAA 61.076 57.895 8.40 0.00 37.75 4.52
4548 4691 1.898574 CACTGACAGGTGGGCCAAC 60.899 63.158 15.52 15.52 37.19 3.77
4549 4692 2.078665 ACTGACAGGTGGGCCAACT 61.079 57.895 21.01 21.01 37.19 3.16
4550 4693 1.151450 CTGACAGGTGGGCCAACTT 59.849 57.895 24.60 13.86 37.19 2.66
4551 4694 1.152777 TGACAGGTGGGCCAACTTG 60.153 57.895 24.60 20.50 37.19 3.16
4552 4695 2.521708 ACAGGTGGGCCAACTTGC 60.522 61.111 24.60 0.90 37.19 4.01
4553 4696 2.203538 CAGGTGGGCCAACTTGCT 60.204 61.111 24.60 0.00 37.19 3.91
4554 4697 1.833934 CAGGTGGGCCAACTTGCTT 60.834 57.895 24.60 0.00 37.19 3.91
4555 4698 1.075301 AGGTGGGCCAACTTGCTTT 60.075 52.632 21.01 0.00 37.19 3.51
4556 4699 1.115326 AGGTGGGCCAACTTGCTTTC 61.115 55.000 21.01 0.00 37.19 2.62
4557 4700 1.007387 GTGGGCCAACTTGCTTTCG 60.007 57.895 8.40 0.00 0.00 3.46
4558 4701 2.199652 TGGGCCAACTTGCTTTCGG 61.200 57.895 2.13 0.00 0.00 4.30
4559 4702 2.650778 GGCCAACTTGCTTTCGGG 59.349 61.111 0.00 0.00 0.00 5.14
4560 4703 2.049156 GCCAACTTGCTTTCGGGC 60.049 61.111 0.00 0.00 0.00 6.13
4561 4704 2.650778 CCAACTTGCTTTCGGGCC 59.349 61.111 0.00 0.00 0.00 5.80
4562 4705 2.650778 CAACTTGCTTTCGGGCCC 59.349 61.111 13.57 13.57 0.00 5.80
4563 4706 2.197324 AACTTGCTTTCGGGCCCA 59.803 55.556 24.92 6.15 0.00 5.36
4564 4707 2.200337 AACTTGCTTTCGGGCCCAC 61.200 57.895 24.92 5.64 0.00 4.61
4565 4708 3.373565 CTTGCTTTCGGGCCCACC 61.374 66.667 24.92 4.81 0.00 4.61
4566 4709 3.868200 CTTGCTTTCGGGCCCACCT 62.868 63.158 24.92 0.00 36.97 4.00
4567 4710 4.659172 TGCTTTCGGGCCCACCTG 62.659 66.667 24.92 10.12 44.63 4.00
4568 4711 4.660938 GCTTTCGGGCCCACCTGT 62.661 66.667 24.92 0.00 43.58 4.00
4569 4712 2.359975 CTTTCGGGCCCACCTGTC 60.360 66.667 24.92 0.00 43.58 3.51
4570 4713 3.172106 TTTCGGGCCCACCTGTCA 61.172 61.111 24.92 0.00 43.58 3.58
4571 4714 3.190738 TTTCGGGCCCACCTGTCAG 62.191 63.158 24.92 1.98 43.58 3.51
4572 4715 4.954118 TCGGGCCCACCTGTCAGT 62.954 66.667 24.92 0.00 43.58 3.41
4573 4716 4.704833 CGGGCCCACCTGTCAGTG 62.705 72.222 24.92 0.00 37.57 3.66
4579 4722 2.515398 CACCTGTCAGTGGCCCAA 59.485 61.111 0.00 0.00 33.95 4.12
4580 4723 1.898574 CACCTGTCAGTGGCCCAAC 60.899 63.158 0.00 0.00 33.95 3.77
4581 4724 2.078665 ACCTGTCAGTGGCCCAACT 61.079 57.895 0.00 0.00 0.00 3.16
4583 4726 2.203337 TGTCAGTGGCCCAACTGC 60.203 61.111 16.60 12.53 45.93 4.40
4584 4727 2.203337 GTCAGTGGCCCAACTGCA 60.203 61.111 16.60 5.16 45.93 4.41
4585 4728 2.203337 TCAGTGGCCCAACTGCAC 60.203 61.111 16.60 0.00 45.93 4.57
4586 4729 3.297620 CAGTGGCCCAACTGCACC 61.298 66.667 10.07 0.00 41.05 5.01
4587 4730 4.603535 AGTGGCCCAACTGCACCC 62.604 66.667 0.00 0.00 0.00 4.61
4588 4731 4.603535 GTGGCCCAACTGCACCCT 62.604 66.667 0.00 0.00 0.00 4.34
4589 4732 4.601794 TGGCCCAACTGCACCCTG 62.602 66.667 0.00 0.00 0.00 4.45
4599 4742 2.342279 GCACCCTGCAGTACGTCA 59.658 61.111 13.81 0.00 44.26 4.35
4600 4743 1.738099 GCACCCTGCAGTACGTCAG 60.738 63.158 13.81 9.54 44.26 3.51
4601 4744 1.964448 CACCCTGCAGTACGTCAGA 59.036 57.895 13.81 0.00 32.26 3.27
4602 4745 0.109086 CACCCTGCAGTACGTCAGAG 60.109 60.000 13.81 7.84 32.26 3.35
4603 4746 1.251527 ACCCTGCAGTACGTCAGAGG 61.252 60.000 13.81 15.90 32.26 3.69
4604 4747 0.965866 CCCTGCAGTACGTCAGAGGA 60.966 60.000 13.81 0.00 32.26 3.71
4605 4748 0.453793 CCTGCAGTACGTCAGAGGAG 59.546 60.000 13.81 0.00 32.26 3.69
4606 4749 0.179150 CTGCAGTACGTCAGAGGAGC 60.179 60.000 5.25 0.00 32.26 4.70
4607 4750 1.139947 GCAGTACGTCAGAGGAGCC 59.860 63.158 0.00 0.00 0.00 4.70
4608 4751 1.316706 GCAGTACGTCAGAGGAGCCT 61.317 60.000 0.00 0.00 0.00 4.58
4609 4752 0.736053 CAGTACGTCAGAGGAGCCTC 59.264 60.000 8.50 8.50 43.03 4.70
4610 4753 0.745128 AGTACGTCAGAGGAGCCTCG 60.745 60.000 10.69 6.49 46.90 4.63
4611 4754 1.025647 GTACGTCAGAGGAGCCTCGT 61.026 60.000 10.69 8.30 46.90 4.18
4612 4755 0.743701 TACGTCAGAGGAGCCTCGTC 60.744 60.000 10.69 6.30 46.90 4.20
4613 4756 2.766400 CGTCAGAGGAGCCTCGTCC 61.766 68.421 10.64 2.33 46.90 4.79
4614 4757 2.438614 TCAGAGGAGCCTCGTCCG 60.439 66.667 10.64 1.06 46.90 4.79
4615 4758 2.438614 CAGAGGAGCCTCGTCCGA 60.439 66.667 10.64 0.00 46.90 4.55
4616 4759 1.826054 CAGAGGAGCCTCGTCCGAT 60.826 63.158 10.64 0.00 46.90 4.18
4617 4760 0.535328 CAGAGGAGCCTCGTCCGATA 60.535 60.000 10.64 0.00 46.90 2.92
4618 4761 0.250553 AGAGGAGCCTCGTCCGATAG 60.251 60.000 10.64 0.00 46.90 2.08
4619 4762 1.238625 GAGGAGCCTCGTCCGATAGG 61.239 65.000 2.98 0.00 45.54 2.57
4669 4812 1.187567 AACCATTGCTGCTTGTCCCC 61.188 55.000 0.00 0.00 0.00 4.81
4716 4859 1.865788 CGCCACCACCATTGTTCCAG 61.866 60.000 0.00 0.00 0.00 3.86
4741 4889 1.089920 CTCCTATGTGTTGGTGCTGC 58.910 55.000 0.00 0.00 0.00 5.25
4753 4901 2.435762 TGCTGCGTGTGTGTGTGT 60.436 55.556 0.00 0.00 0.00 3.72
4914 5062 0.163360 GATGATGCGCTCGATCTTGC 59.837 55.000 9.73 0.00 0.00 4.01
4915 5063 0.249784 ATGATGCGCTCGATCTTGCT 60.250 50.000 9.73 0.00 0.00 3.91
4916 5064 0.873312 TGATGCGCTCGATCTTGCTC 60.873 55.000 9.73 0.00 0.00 4.26
4917 5065 0.597118 GATGCGCTCGATCTTGCTCT 60.597 55.000 9.73 0.00 0.00 4.09
4918 5066 0.179089 ATGCGCTCGATCTTGCTCTT 60.179 50.000 9.73 0.00 0.00 2.85
4919 5067 1.080435 TGCGCTCGATCTTGCTCTTG 61.080 55.000 9.73 0.00 0.00 3.02
4971 6049 0.250338 GGCCCGGCCTCTTACTATTG 60.250 60.000 22.31 0.00 46.69 1.90
5029 6112 1.449246 GCTCTCATCGCTTGCTGGT 60.449 57.895 0.00 0.00 0.00 4.00
5038 6121 0.798776 CGCTTGCTGGTTTACTCCTG 59.201 55.000 0.00 0.00 0.00 3.86
5039 6122 1.878102 CGCTTGCTGGTTTACTCCTGT 60.878 52.381 0.00 0.00 0.00 4.00
5040 6123 2.230660 GCTTGCTGGTTTACTCCTGTT 58.769 47.619 0.00 0.00 0.00 3.16
5041 6124 3.408634 GCTTGCTGGTTTACTCCTGTTA 58.591 45.455 0.00 0.00 0.00 2.41
5042 6125 4.010349 GCTTGCTGGTTTACTCCTGTTAT 58.990 43.478 0.00 0.00 0.00 1.89
5043 6126 4.459337 GCTTGCTGGTTTACTCCTGTTATT 59.541 41.667 0.00 0.00 0.00 1.40
5044 6127 5.646360 GCTTGCTGGTTTACTCCTGTTATTA 59.354 40.000 0.00 0.00 0.00 0.98
5045 6128 6.318900 GCTTGCTGGTTTACTCCTGTTATTAT 59.681 38.462 0.00 0.00 0.00 1.28
5046 6129 7.497909 GCTTGCTGGTTTACTCCTGTTATTATA 59.502 37.037 0.00 0.00 0.00 0.98
5047 6130 8.726870 TTGCTGGTTTACTCCTGTTATTATAC 57.273 34.615 0.00 0.00 0.00 1.47
5048 6131 7.853299 TGCTGGTTTACTCCTGTTATTATACA 58.147 34.615 0.00 0.00 0.00 2.29
5049 6132 8.322828 TGCTGGTTTACTCCTGTTATTATACAA 58.677 33.333 0.00 0.00 0.00 2.41
5050 6133 8.827677 GCTGGTTTACTCCTGTTATTATACAAG 58.172 37.037 0.00 0.00 0.00 3.16
5051 6134 9.886132 CTGGTTTACTCCTGTTATTATACAAGT 57.114 33.333 0.00 0.00 0.00 3.16
5058 6141 9.817809 ACTCCTGTTATTATACAAGTATGTGTG 57.182 33.333 3.06 0.00 40.84 3.82
5059 6142 8.657074 TCCTGTTATTATACAAGTATGTGTGC 57.343 34.615 3.06 0.00 40.84 4.57
5060 6143 8.261522 TCCTGTTATTATACAAGTATGTGTGCA 58.738 33.333 3.06 0.00 40.84 4.57
5061 6144 8.551205 CCTGTTATTATACAAGTATGTGTGCAG 58.449 37.037 3.06 6.14 40.84 4.41
5062 6145 7.915508 TGTTATTATACAAGTATGTGTGCAGC 58.084 34.615 3.06 0.00 40.84 5.25
5063 6146 7.550906 TGTTATTATACAAGTATGTGTGCAGCA 59.449 33.333 0.00 0.00 40.84 4.41
5064 6147 8.394877 GTTATTATACAAGTATGTGTGCAGCAA 58.605 33.333 0.00 0.00 40.84 3.91
5065 6148 4.685169 ATACAAGTATGTGTGCAGCAAC 57.315 40.909 0.00 0.00 40.84 4.17
5066 6149 1.264020 ACAAGTATGTGTGCAGCAACG 59.736 47.619 0.00 0.00 38.69 4.10
5067 6150 0.874390 AAGTATGTGTGCAGCAACGG 59.126 50.000 0.00 0.00 0.00 4.44
5068 6151 1.154225 GTATGTGTGCAGCAACGGC 60.154 57.895 0.00 0.00 41.61 5.68
5069 6152 2.331893 TATGTGTGCAGCAACGGCC 61.332 57.895 0.00 0.00 42.56 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
1 2 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
2 3 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
3 4 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
4 5 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
5 6 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
6 7 0.387367 CGAGCGCTTGTGTCTGTACT 60.387 55.000 13.26 0.00 0.00 2.73
7 8 0.663568 ACGAGCGCTTGTGTCTGTAC 60.664 55.000 29.30 2.12 0.00 2.90
8 9 0.876399 TACGAGCGCTTGTGTCTGTA 59.124 50.000 35.42 15.45 0.00 2.74
9 10 0.243907 ATACGAGCGCTTGTGTCTGT 59.756 50.000 35.42 13.86 0.00 3.41
10 11 2.188837 TATACGAGCGCTTGTGTCTG 57.811 50.000 35.42 11.99 0.00 3.51
11 12 3.886549 GTATATACGAGCGCTTGTGTCT 58.113 45.455 35.42 24.84 0.00 3.41
25 26 3.850273 GGTGAGTGTATGCGCGTATATAC 59.150 47.826 27.91 27.91 0.00 1.47
26 27 3.119743 GGGTGAGTGTATGCGCGTATATA 60.120 47.826 19.79 14.59 0.00 0.86
27 28 2.352421 GGGTGAGTGTATGCGCGTATAT 60.352 50.000 19.79 4.31 0.00 0.86
28 29 1.001048 GGGTGAGTGTATGCGCGTATA 60.001 52.381 13.13 13.13 0.00 1.47
29 30 0.249322 GGGTGAGTGTATGCGCGTAT 60.249 55.000 15.52 15.52 0.00 3.06
30 31 1.140161 GGGTGAGTGTATGCGCGTA 59.860 57.895 8.43 4.92 0.00 4.42
31 32 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
32 33 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
33 34 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
34 35 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
35 36 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
36 37 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
37 38 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
38 39 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
39 40 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
40 41 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
41 42 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
42 43 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
43 44 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
44 45 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
45 46 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
46 47 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
47 48 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
48 49 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
49 50 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
50 51 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
51 52 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
52 53 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
53 54 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
54 55 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
57 58 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
58 59 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
59 60 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
60 61 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
61 62 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
62 63 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
63 64 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
64 65 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
65 66 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
66 67 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
67 68 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
68 69 0.759346 GTGCTCATAGGGGTAGGGTG 59.241 60.000 0.00 0.00 0.00 4.61
69 70 0.400093 GGTGCTCATAGGGGTAGGGT 60.400 60.000 0.00 0.00 0.00 4.34
70 71 0.104934 AGGTGCTCATAGGGGTAGGG 60.105 60.000 0.00 0.00 0.00 3.53
71 72 1.343069 GAGGTGCTCATAGGGGTAGG 58.657 60.000 0.00 0.00 0.00 3.18
72 73 1.343069 GGAGGTGCTCATAGGGGTAG 58.657 60.000 0.00 0.00 31.08 3.18
73 74 0.469331 CGGAGGTGCTCATAGGGGTA 60.469 60.000 0.00 0.00 31.08 3.69
74 75 1.762460 CGGAGGTGCTCATAGGGGT 60.762 63.158 0.00 0.00 31.08 4.95
75 76 1.048724 TTCGGAGGTGCTCATAGGGG 61.049 60.000 0.00 0.00 31.08 4.79
76 77 0.830648 TTTCGGAGGTGCTCATAGGG 59.169 55.000 0.00 0.00 31.08 3.53
77 78 1.757118 TCTTTCGGAGGTGCTCATAGG 59.243 52.381 0.00 0.00 31.08 2.57
78 79 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
79 80 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
80 81 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
81 82 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
82 83 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
83 84 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
84 85 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
85 86 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
86 87 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
87 88 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
88 89 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
89 90 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
90 91 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
91 92 2.048222 TGCCGGCTCAGTCTTTCG 60.048 61.111 29.70 0.00 0.00 3.46
92 93 0.674895 ATGTGCCGGCTCAGTCTTTC 60.675 55.000 32.06 10.69 0.00 2.62
93 94 0.674895 GATGTGCCGGCTCAGTCTTT 60.675 55.000 32.06 17.98 0.00 2.52
94 95 1.078848 GATGTGCCGGCTCAGTCTT 60.079 57.895 32.06 18.34 0.00 3.01
95 96 1.620739 ATGATGTGCCGGCTCAGTCT 61.621 55.000 32.06 18.70 0.00 3.24
96 97 1.153289 ATGATGTGCCGGCTCAGTC 60.153 57.895 32.06 26.67 0.00 3.51
97 98 1.153289 GATGATGTGCCGGCTCAGT 60.153 57.895 32.06 21.65 0.00 3.41
98 99 0.463295 AAGATGATGTGCCGGCTCAG 60.463 55.000 32.06 0.00 0.00 3.35
99 100 0.745486 CAAGATGATGTGCCGGCTCA 60.745 55.000 31.27 31.27 0.00 4.26
100 101 0.462581 TCAAGATGATGTGCCGGCTC 60.463 55.000 29.70 25.38 0.00 4.70
101 102 0.463295 CTCAAGATGATGTGCCGGCT 60.463 55.000 29.70 7.33 0.00 5.52
102 103 0.462581 TCTCAAGATGATGTGCCGGC 60.463 55.000 22.73 22.73 0.00 6.13
103 104 2.251409 ATCTCAAGATGATGTGCCGG 57.749 50.000 0.00 0.00 32.68 6.13
104 105 4.318333 CGTAAATCTCAAGATGATGTGCCG 60.318 45.833 0.00 0.00 34.49 5.69
105 106 4.811024 TCGTAAATCTCAAGATGATGTGCC 59.189 41.667 0.00 0.00 34.49 5.01
106 107 5.973651 TCGTAAATCTCAAGATGATGTGC 57.026 39.130 0.00 0.00 34.49 4.57
107 108 7.276438 TGACTTCGTAAATCTCAAGATGATGTG 59.724 37.037 0.00 0.00 34.49 3.21
108 109 7.276658 GTGACTTCGTAAATCTCAAGATGATGT 59.723 37.037 0.00 0.00 34.49 3.06
109 110 7.490725 AGTGACTTCGTAAATCTCAAGATGATG 59.509 37.037 0.00 0.00 34.49 3.07
110 111 7.490725 CAGTGACTTCGTAAATCTCAAGATGAT 59.509 37.037 0.00 0.00 34.49 2.45
111 112 6.808704 CAGTGACTTCGTAAATCTCAAGATGA 59.191 38.462 0.00 0.00 34.49 2.92
112 113 6.587990 ACAGTGACTTCGTAAATCTCAAGATG 59.412 38.462 0.00 0.00 34.49 2.90
113 114 6.692486 ACAGTGACTTCGTAAATCTCAAGAT 58.308 36.000 0.00 0.00 36.07 2.40
114 115 6.085555 ACAGTGACTTCGTAAATCTCAAGA 57.914 37.500 0.00 0.00 0.00 3.02
115 116 6.528423 CCTACAGTGACTTCGTAAATCTCAAG 59.472 42.308 0.00 0.00 0.00 3.02
116 117 6.387465 CCTACAGTGACTTCGTAAATCTCAA 58.613 40.000 0.00 0.00 0.00 3.02
117 118 5.621555 GCCTACAGTGACTTCGTAAATCTCA 60.622 44.000 0.00 0.00 0.00 3.27
118 119 4.799428 GCCTACAGTGACTTCGTAAATCTC 59.201 45.833 0.00 0.00 0.00 2.75
119 120 4.674623 CGCCTACAGTGACTTCGTAAATCT 60.675 45.833 0.00 0.00 0.00 2.40
120 121 3.546670 CGCCTACAGTGACTTCGTAAATC 59.453 47.826 0.00 0.00 0.00 2.17
121 122 3.508762 CGCCTACAGTGACTTCGTAAAT 58.491 45.455 0.00 0.00 0.00 1.40
122 123 2.923605 GCGCCTACAGTGACTTCGTAAA 60.924 50.000 0.00 0.00 0.00 2.01
123 124 1.401931 GCGCCTACAGTGACTTCGTAA 60.402 52.381 0.00 0.00 0.00 3.18
124 125 0.169672 GCGCCTACAGTGACTTCGTA 59.830 55.000 0.00 0.00 0.00 3.43
125 126 1.080705 GCGCCTACAGTGACTTCGT 60.081 57.895 0.00 0.00 0.00 3.85
126 127 1.805945 GGCGCCTACAGTGACTTCG 60.806 63.158 22.15 0.00 0.00 3.79
127 128 1.592223 AGGCGCCTACAGTGACTTC 59.408 57.895 31.86 0.00 44.04 3.01
128 129 3.793060 AGGCGCCTACAGTGACTT 58.207 55.556 31.86 0.00 44.04 3.01
130 131 2.202623 CGAGGCGCCTACAGTGAC 60.203 66.667 32.97 14.51 0.00 3.67
131 132 2.675423 ACGAGGCGCCTACAGTGA 60.675 61.111 32.97 0.00 0.00 3.41
132 133 2.202623 GACGAGGCGCCTACAGTG 60.203 66.667 32.97 18.94 0.00 3.66
133 134 3.812019 CGACGAGGCGCCTACAGT 61.812 66.667 32.97 28.48 0.00 3.55
134 135 3.736482 GACGACGAGGCGCCTACAG 62.736 68.421 32.97 25.33 33.86 2.74
135 136 3.807538 GACGACGAGGCGCCTACA 61.808 66.667 32.97 0.00 33.86 2.74
158 159 3.570559 CTTTCAGTGAGAGGAGACGTTC 58.429 50.000 2.68 0.00 0.00 3.95
159 160 2.288518 GCTTTCAGTGAGAGGAGACGTT 60.289 50.000 12.28 0.00 0.00 3.99
160 161 1.271102 GCTTTCAGTGAGAGGAGACGT 59.729 52.381 12.28 0.00 0.00 4.34
161 162 1.730772 CGCTTTCAGTGAGAGGAGACG 60.731 57.143 12.28 3.84 0.00 4.18
162 163 1.989430 CGCTTTCAGTGAGAGGAGAC 58.011 55.000 12.28 0.00 0.00 3.36
163 164 0.244994 GCGCTTTCAGTGAGAGGAGA 59.755 55.000 12.28 0.00 0.00 3.71
164 165 0.037882 TGCGCTTTCAGTGAGAGGAG 60.038 55.000 9.73 2.39 0.00 3.69
165 166 0.610174 ATGCGCTTTCAGTGAGAGGA 59.390 50.000 9.73 0.00 0.00 3.71
166 167 1.005340 GATGCGCTTTCAGTGAGAGG 58.995 55.000 9.73 4.24 0.00 3.69
167 168 0.644331 CGATGCGCTTTCAGTGAGAG 59.356 55.000 9.73 6.31 0.00 3.20
168 169 2.741930 CGATGCGCTTTCAGTGAGA 58.258 52.632 9.73 0.00 0.00 3.27
180 181 2.588877 AGGATTTCCGGCGATGCG 60.589 61.111 9.30 0.00 42.08 4.73
181 182 1.095228 TTCAGGATTTCCGGCGATGC 61.095 55.000 9.30 0.00 42.08 3.91
182 183 1.378531 TTTCAGGATTTCCGGCGATG 58.621 50.000 9.30 0.00 42.08 3.84
183 184 2.348411 ATTTCAGGATTTCCGGCGAT 57.652 45.000 9.30 0.00 42.08 4.58
184 185 2.992124 TATTTCAGGATTTCCGGCGA 57.008 45.000 9.30 0.00 42.08 5.54
185 186 4.537015 GATTTATTTCAGGATTTCCGGCG 58.463 43.478 0.00 0.00 42.08 6.46
186 187 4.340950 TGGATTTATTTCAGGATTTCCGGC 59.659 41.667 0.00 0.00 42.08 6.13
187 188 5.594317 ACTGGATTTATTTCAGGATTTCCGG 59.406 40.000 0.00 0.00 42.08 5.14
188 189 6.699575 ACTGGATTTATTTCAGGATTTCCG 57.300 37.500 0.00 0.00 42.08 4.30
195 196 9.398170 CGCATTATTTACTGGATTTATTTCAGG 57.602 33.333 0.00 0.00 33.19 3.86
198 199 9.118236 GCTCGCATTATTTACTGGATTTATTTC 57.882 33.333 0.00 0.00 0.00 2.17
199 200 8.629158 TGCTCGCATTATTTACTGGATTTATTT 58.371 29.630 0.00 0.00 0.00 1.40
200 201 8.076178 GTGCTCGCATTATTTACTGGATTTATT 58.924 33.333 0.00 0.00 0.00 1.40
201 202 7.308589 GGTGCTCGCATTATTTACTGGATTTAT 60.309 37.037 0.00 0.00 0.00 1.40
202 203 6.017440 GGTGCTCGCATTATTTACTGGATTTA 60.017 38.462 0.00 0.00 0.00 1.40
203 204 5.221048 GGTGCTCGCATTATTTACTGGATTT 60.221 40.000 0.00 0.00 0.00 2.17
204 205 4.275936 GGTGCTCGCATTATTTACTGGATT 59.724 41.667 0.00 0.00 0.00 3.01
205 206 3.815401 GGTGCTCGCATTATTTACTGGAT 59.185 43.478 0.00 0.00 0.00 3.41
206 207 3.202906 GGTGCTCGCATTATTTACTGGA 58.797 45.455 0.00 0.00 0.00 3.86
207 208 2.942376 TGGTGCTCGCATTATTTACTGG 59.058 45.455 0.00 0.00 0.00 4.00
208 209 3.002656 CCTGGTGCTCGCATTATTTACTG 59.997 47.826 0.00 0.00 0.00 2.74
209 210 3.118408 TCCTGGTGCTCGCATTATTTACT 60.118 43.478 0.00 0.00 0.00 2.24
210 211 3.202906 TCCTGGTGCTCGCATTATTTAC 58.797 45.455 0.00 0.00 0.00 2.01
211 212 3.552132 TCCTGGTGCTCGCATTATTTA 57.448 42.857 0.00 0.00 0.00 1.40
212 213 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
213 214 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
214 215 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
215 216 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
216 217 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
217 218 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
218 219 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
219 220 1.064654 GATTCAAATCCTGGTGCTCGC 59.935 52.381 0.00 0.00 0.00 5.03
230 231 2.497273 CCAACCCACCAGGATTCAAATC 59.503 50.000 0.00 0.00 39.89 2.17
231 232 2.539302 CCAACCCACCAGGATTCAAAT 58.461 47.619 0.00 0.00 39.89 2.32
232 233 1.482177 CCCAACCCACCAGGATTCAAA 60.482 52.381 0.00 0.00 39.89 2.69
233 234 0.114168 CCCAACCCACCAGGATTCAA 59.886 55.000 0.00 0.00 39.89 2.69
234 235 1.773635 CCCAACCCACCAGGATTCA 59.226 57.895 0.00 0.00 39.89 2.57
235 236 1.000359 CCCCAACCCACCAGGATTC 60.000 63.158 0.00 0.00 39.89 2.52
236 237 0.855400 ATCCCCAACCCACCAGGATT 60.855 55.000 0.00 0.00 39.89 3.01
237 238 1.230616 ATCCCCAACCCACCAGGAT 60.231 57.895 0.00 0.00 39.89 3.24
238 239 2.212761 ATCCCCAACCCACCAGGA 59.787 61.111 0.00 0.00 39.89 3.86
239 240 2.360191 CATCCCCAACCCACCAGG 59.640 66.667 0.00 0.00 43.78 4.45
240 241 2.362889 GCATCCCCAACCCACCAG 60.363 66.667 0.00 0.00 0.00 4.00
241 242 3.991318 GGCATCCCCAACCCACCA 61.991 66.667 0.00 0.00 0.00 4.17
242 243 3.991318 TGGCATCCCCAACCCACC 61.991 66.667 0.00 0.00 41.82 4.61
249 250 2.531428 TGGACAGTGGCATCCCCA 60.531 61.111 0.00 0.55 42.79 4.96
250 251 2.044946 GTGGACAGTGGCATCCCC 60.045 66.667 0.00 0.00 33.69 4.81
251 252 1.271840 TAGGTGGACAGTGGCATCCC 61.272 60.000 0.00 0.00 33.69 3.85
252 253 0.618458 TTAGGTGGACAGTGGCATCC 59.382 55.000 0.00 0.00 35.37 3.51
253 254 1.679032 GGTTAGGTGGACAGTGGCATC 60.679 57.143 0.00 0.00 0.00 3.91
254 255 0.328258 GGTTAGGTGGACAGTGGCAT 59.672 55.000 0.00 0.00 0.00 4.40
255 256 1.057275 TGGTTAGGTGGACAGTGGCA 61.057 55.000 0.00 0.00 0.00 4.92
256 257 0.328258 ATGGTTAGGTGGACAGTGGC 59.672 55.000 0.00 0.00 0.00 5.01
257 258 1.909302 AGATGGTTAGGTGGACAGTGG 59.091 52.381 0.00 0.00 0.00 4.00
258 259 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
259 260 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
260 261 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
261 262 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
262 263 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
263 264 2.626785 TGGTTGAGATGGTTAGGTGGA 58.373 47.619 0.00 0.00 0.00 4.02
264 265 3.652057 ATGGTTGAGATGGTTAGGTGG 57.348 47.619 0.00 0.00 0.00 4.61
265 266 4.164221 ACCTATGGTTGAGATGGTTAGGTG 59.836 45.833 0.00 0.00 37.24 4.00
266 267 4.371681 ACCTATGGTTGAGATGGTTAGGT 58.628 43.478 0.00 0.00 34.55 3.08
267 268 5.373812 AACCTATGGTTGAGATGGTTAGG 57.626 43.478 0.71 0.00 45.07 2.69
280 281 3.495100 GGATGAGCGAATCAACCTATGGT 60.495 47.826 9.29 0.00 45.24 3.55
281 282 3.070018 GGATGAGCGAATCAACCTATGG 58.930 50.000 9.29 0.00 45.24 2.74
287 288 0.659957 GCCTGGATGAGCGAATCAAC 59.340 55.000 0.00 0.00 42.53 3.18
288 289 0.543277 AGCCTGGATGAGCGAATCAA 59.457 50.000 0.00 0.00 42.53 2.57
289 290 0.543277 AAGCCTGGATGAGCGAATCA 59.457 50.000 0.00 0.00 43.70 2.57
290 291 1.332997 CAAAGCCTGGATGAGCGAATC 59.667 52.381 0.00 0.00 0.00 2.52
291 292 1.340405 ACAAAGCCTGGATGAGCGAAT 60.340 47.619 0.00 0.00 0.00 3.34
292 293 0.036732 ACAAAGCCTGGATGAGCGAA 59.963 50.000 0.00 0.00 0.00 4.70
293 294 0.036732 AACAAAGCCTGGATGAGCGA 59.963 50.000 0.00 0.00 0.00 4.93
294 295 0.169672 CAACAAAGCCTGGATGAGCG 59.830 55.000 0.00 0.00 0.00 5.03
295 296 0.529378 CCAACAAAGCCTGGATGAGC 59.471 55.000 0.00 0.00 34.35 4.26
296 297 2.089980 CTCCAACAAAGCCTGGATGAG 58.910 52.381 0.00 0.00 40.92 2.90
309 310 1.231641 CAAACCACCCCCTCCAACA 59.768 57.895 0.00 0.00 0.00 3.33
311 312 2.200092 GCAAACCACCCCCTCCAA 59.800 61.111 0.00 0.00 0.00 3.53
312 313 4.278513 CGCAAACCACCCCCTCCA 62.279 66.667 0.00 0.00 0.00 3.86
319 320 1.356527 CCGTAGTAGCGCAAACCACC 61.357 60.000 11.47 0.00 0.00 4.61
448 449 1.585002 CTCGCTTTCTCTCTCCGCG 60.585 63.158 0.00 0.00 44.63 6.46
468 469 2.042930 ATGACCACTCCCCCTCCC 59.957 66.667 0.00 0.00 0.00 4.30
470 471 3.049080 GCCATGACCACTCCCCCTC 62.049 68.421 0.00 0.00 0.00 4.30
471 472 3.017581 GCCATGACCACTCCCCCT 61.018 66.667 0.00 0.00 0.00 4.79
552 553 3.203040 GGGGTGGTGGTACTAGTAGAGTA 59.797 52.174 1.87 0.00 39.81 2.59
553 554 2.024560 GGGGTGGTGGTACTAGTAGAGT 60.025 54.545 1.87 0.00 42.69 3.24
554 555 2.664015 GGGGTGGTGGTACTAGTAGAG 58.336 57.143 1.87 0.00 0.00 2.43
555 556 1.288932 GGGGGTGGTGGTACTAGTAGA 59.711 57.143 1.87 0.00 0.00 2.59
556 557 1.785647 GGGGGTGGTGGTACTAGTAG 58.214 60.000 1.87 0.00 0.00 2.57
558 559 4.903781 GGGGGTGGTGGTACTAGT 57.096 61.111 0.00 0.00 0.00 2.57
599 603 1.073125 CTATCCTCCTCGCTCTCTCCA 59.927 57.143 0.00 0.00 0.00 3.86
612 618 0.832559 CCCCCTTCGTCCCTATCCTC 60.833 65.000 0.00 0.00 0.00 3.71
630 636 6.943899 ATATTTCTATCTTCCCTCCTCACC 57.056 41.667 0.00 0.00 0.00 4.02
677 683 4.106925 CTGGCTGGCTGGACCTCC 62.107 72.222 2.00 0.00 40.22 4.30
729 735 1.801512 GCCGATTTTTGCACCGAGC 60.802 57.895 0.00 0.00 45.96 5.03
730 736 0.171007 ATGCCGATTTTTGCACCGAG 59.829 50.000 0.00 0.00 40.88 4.63
931 956 1.558233 GGGGAGGAAGAACGAGAGAA 58.442 55.000 0.00 0.00 0.00 2.87
938 968 1.201429 TGAGCAGGGGGAGGAAGAAC 61.201 60.000 0.00 0.00 0.00 3.01
940 970 0.692419 GATGAGCAGGGGGAGGAAGA 60.692 60.000 0.00 0.00 0.00 2.87
949 979 1.694133 GGACTGGAGGATGAGCAGGG 61.694 65.000 0.00 0.00 0.00 4.45
964 994 2.366570 GGCCAGGAGGAGAGGACT 59.633 66.667 0.00 0.00 36.89 3.85
1210 1256 1.067821 CAGACGCCATTACTCCTCTCC 59.932 57.143 0.00 0.00 0.00 3.71
1237 1283 0.311790 CATCCTGCCAACACACACAC 59.688 55.000 0.00 0.00 0.00 3.82
1238 1284 0.106769 ACATCCTGCCAACACACACA 60.107 50.000 0.00 0.00 0.00 3.72
1239 1285 1.001378 GAACATCCTGCCAACACACAC 60.001 52.381 0.00 0.00 0.00 3.82
1240 1286 1.317613 GAACATCCTGCCAACACACA 58.682 50.000 0.00 0.00 0.00 3.72
1355 1401 2.434884 ACCTTCATCTGCGTGCGG 60.435 61.111 0.00 0.00 0.00 5.69
1373 1419 3.837578 CCATGGATGGCAGCACTC 58.162 61.111 5.56 0.00 41.75 3.51
1399 1445 3.748568 AGAAACCTCGAGCAATCAAAGAC 59.251 43.478 6.99 0.00 0.00 3.01
1429 1475 9.852091 CATGGAGAAGAAGAAGGAAAATAAAAG 57.148 33.333 0.00 0.00 0.00 2.27
1430 1476 9.586732 TCATGGAGAAGAAGAAGGAAAATAAAA 57.413 29.630 0.00 0.00 0.00 1.52
1431 1477 9.759473 ATCATGGAGAAGAAGAAGGAAAATAAA 57.241 29.630 0.00 0.00 0.00 1.40
1432 1478 9.401058 GATCATGGAGAAGAAGAAGGAAAATAA 57.599 33.333 0.00 0.00 0.00 1.40
1433 1479 8.776119 AGATCATGGAGAAGAAGAAGGAAAATA 58.224 33.333 0.00 0.00 0.00 1.40
1434 1480 7.556996 CAGATCATGGAGAAGAAGAAGGAAAAT 59.443 37.037 0.00 0.00 0.00 1.82
1435 1481 6.883217 CAGATCATGGAGAAGAAGAAGGAAAA 59.117 38.462 0.00 0.00 0.00 2.29
1436 1482 6.413052 CAGATCATGGAGAAGAAGAAGGAAA 58.587 40.000 0.00 0.00 0.00 3.13
1437 1483 5.987098 CAGATCATGGAGAAGAAGAAGGAA 58.013 41.667 0.00 0.00 0.00 3.36
1438 1484 5.611128 CAGATCATGGAGAAGAAGAAGGA 57.389 43.478 0.00 0.00 0.00 3.36
1482 1528 0.958091 CAACAAACAGATTCCGCCCA 59.042 50.000 0.00 0.00 0.00 5.36
1567 1613 1.215382 CTCGCACCGGATCTTGTCA 59.785 57.895 9.46 0.00 0.00 3.58
1801 1847 3.083349 CCGCCCATGGAGAGGTCA 61.083 66.667 15.22 0.00 0.00 4.02
2028 2092 1.079503 GATCTTGACCCAGACGTTGC 58.920 55.000 0.00 0.00 0.00 4.17
2085 2149 3.928005 TGGAGTAGATGGAGTCGTACT 57.072 47.619 0.00 0.00 0.00 2.73
2167 2231 2.182842 GGGGCTCATGCACACGATC 61.183 63.158 0.00 0.00 46.28 3.69
2223 2287 1.538666 GTTGGAGGGGATGGATGGG 59.461 63.158 0.00 0.00 0.00 4.00
2272 2340 3.059800 GCAAACGGTCAGTTCAGAACTAC 60.060 47.826 15.73 13.16 43.37 2.73
2471 2542 0.037975 ACACCCGACACCGTTATGTC 60.038 55.000 2.47 2.47 44.68 3.06
2484 2555 0.802222 CTCGTACATCTGCACACCCG 60.802 60.000 0.00 0.00 0.00 5.28
2723 2794 1.810030 GGACTGATCGGTCGTTGGC 60.810 63.158 24.89 9.84 37.12 4.52
2733 2804 0.316841 GAGAGGCCGATGGACTGATC 59.683 60.000 0.00 0.00 43.92 2.92
3062 3164 5.937540 ACTGTCAACAAAATCCATCATCGTA 59.062 36.000 0.00 0.00 0.00 3.43
3064 3166 5.090757 CACTGTCAACAAAATCCATCATCG 58.909 41.667 0.00 0.00 0.00 3.84
3075 3177 1.433053 CGGCCGTCACTGTCAACAAA 61.433 55.000 19.50 0.00 0.00 2.83
3394 3496 0.582005 GACAAGAACCGTGACAGTGC 59.418 55.000 0.00 0.00 0.00 4.40
3401 3503 0.774098 CGTACGTGACAAGAACCGTG 59.226 55.000 7.22 0.00 34.95 4.94
3448 3566 1.668419 GGCAACAATGGCGAGATACT 58.332 50.000 0.00 0.00 42.73 2.12
3471 3589 3.991051 ACAGGACGTCCCACTGCG 61.991 66.667 30.82 14.47 37.41 5.18
3577 3695 1.781429 CATTATCGCCTCGTCAAGTCG 59.219 52.381 0.00 0.00 0.00 4.18
3631 3749 4.665645 CGCCATTAACGCAAATACTATCCG 60.666 45.833 0.00 0.00 0.00 4.18
3662 3780 3.191162 CGATTCAAAAGTTGCCAGGATCA 59.809 43.478 0.00 0.00 0.00 2.92
3663 3781 3.762779 CGATTCAAAAGTTGCCAGGATC 58.237 45.455 0.00 0.00 0.00 3.36
3664 3782 2.094545 GCGATTCAAAAGTTGCCAGGAT 60.095 45.455 0.00 0.00 0.00 3.24
3665 3783 1.269448 GCGATTCAAAAGTTGCCAGGA 59.731 47.619 0.00 0.00 0.00 3.86
3666 3784 1.000385 TGCGATTCAAAAGTTGCCAGG 60.000 47.619 0.00 0.00 0.00 4.45
3691 3810 2.202544 CGTCTGGCTCGAGCTCAC 60.203 66.667 34.46 25.23 41.70 3.51
4085 4207 0.604780 CTCGGATGGATGGTGGATGC 60.605 60.000 0.00 0.00 0.00 3.91
4129 4251 1.354705 TCCCTCCTCTCTCGTCAGAAA 59.645 52.381 0.00 0.00 0.00 2.52
4140 4262 2.242196 CTGTTCTCTCTCTCCCTCCTCT 59.758 54.545 0.00 0.00 0.00 3.69
4144 4266 2.495669 CCAACTGTTCTCTCTCTCCCTC 59.504 54.545 0.00 0.00 0.00 4.30
4145 4267 2.158234 ACCAACTGTTCTCTCTCTCCCT 60.158 50.000 0.00 0.00 0.00 4.20
4146 4268 2.252714 ACCAACTGTTCTCTCTCTCCC 58.747 52.381 0.00 0.00 0.00 4.30
4147 4269 3.556004 CCAACCAACTGTTCTCTCTCTCC 60.556 52.174 0.00 0.00 34.00 3.71
4236 4358 5.738909 AGAAACAGAGAGAGAGAGAGAGAG 58.261 45.833 0.00 0.00 0.00 3.20
4237 4359 5.338381 GGAGAAACAGAGAGAGAGAGAGAGA 60.338 48.000 0.00 0.00 0.00 3.10
4254 4376 0.389556 GGACGGACGGAAGGAGAAAC 60.390 60.000 0.00 0.00 0.00 2.78
4329 4460 2.033793 AACGAAGACTGACGAACGAG 57.966 50.000 8.86 0.00 0.00 4.18
4358 4489 9.834628 CAAAATCCTGTAAAATTACGCTAAAGA 57.165 29.630 0.00 0.00 36.45 2.52
4359 4490 9.620660 ACAAAATCCTGTAAAATTACGCTAAAG 57.379 29.630 0.00 0.00 36.45 1.85
4360 4491 9.615295 GACAAAATCCTGTAAAATTACGCTAAA 57.385 29.630 0.00 0.00 36.45 1.85
4384 4515 5.001232 TGCATGAACTAGTTTAAGGTGGAC 58.999 41.667 10.02 0.00 0.00 4.02
4385 4516 5.235850 TGCATGAACTAGTTTAAGGTGGA 57.764 39.130 10.02 0.00 0.00 4.02
4417 4548 0.891373 CACTGACTGACCTGACCGAT 59.109 55.000 0.00 0.00 0.00 4.18
4462 4605 7.701924 CGCCTATCATATCTCTCTTTCTGATTC 59.298 40.741 0.00 0.00 0.00 2.52
4490 4633 3.462678 GTCAGGGGAGCCGAGTCC 61.463 72.222 0.00 0.00 35.64 3.85
4491 4634 3.827898 CGTCAGGGGAGCCGAGTC 61.828 72.222 0.00 0.00 0.00 3.36
4492 4635 3.278072 TACGTCAGGGGAGCCGAGT 62.278 63.158 0.00 0.00 0.00 4.18
4493 4636 2.439701 TACGTCAGGGGAGCCGAG 60.440 66.667 0.00 0.00 0.00 4.63
4494 4637 2.753043 GTACGTCAGGGGAGCCGA 60.753 66.667 0.00 0.00 0.00 5.54
4495 4638 2.754658 AGTACGTCAGGGGAGCCG 60.755 66.667 0.00 0.00 0.00 5.52
4496 4639 2.893398 CAGTACGTCAGGGGAGCC 59.107 66.667 0.00 0.00 0.00 4.70
4497 4640 2.184579 GCAGTACGTCAGGGGAGC 59.815 66.667 0.00 0.00 0.00 4.70
4498 4641 1.513158 CTGCAGTACGTCAGGGGAG 59.487 63.158 5.25 0.00 0.00 4.30
4499 4642 1.982395 CCTGCAGTACGTCAGGGGA 60.982 63.158 21.58 0.00 44.64 4.81
4500 4643 2.579201 CCTGCAGTACGTCAGGGG 59.421 66.667 21.58 5.35 44.64 4.79
4503 4646 1.738099 GCACCCTGCAGTACGTCAG 60.738 63.158 13.81 9.54 44.26 3.51
4504 4647 2.342279 GCACCCTGCAGTACGTCA 59.658 61.111 13.81 0.00 44.26 4.35
4513 4656 2.985847 GACCCAACTGCACCCTGC 60.986 66.667 0.00 0.00 45.29 4.85
4514 4657 1.898574 GTGACCCAACTGCACCCTG 60.899 63.158 0.00 0.00 0.00 4.45
4515 4658 2.078665 AGTGACCCAACTGCACCCT 61.079 57.895 0.00 0.00 33.14 4.34
4516 4659 1.898574 CAGTGACCCAACTGCACCC 60.899 63.158 0.00 0.00 41.05 4.61
4517 4660 1.148273 TCAGTGACCCAACTGCACC 59.852 57.895 0.00 0.00 45.93 5.01
4518 4661 0.463654 TGTCAGTGACCCAACTGCAC 60.464 55.000 20.43 0.00 45.93 4.57
4519 4662 0.179048 CTGTCAGTGACCCAACTGCA 60.179 55.000 20.43 0.00 45.93 4.41
4520 4663 0.886490 CCTGTCAGTGACCCAACTGC 60.886 60.000 20.43 0.00 45.93 4.40
4522 4665 0.469917 CACCTGTCAGTGACCCAACT 59.530 55.000 20.43 0.00 40.34 3.16
4523 4666 0.535102 CCACCTGTCAGTGACCCAAC 60.535 60.000 20.43 0.00 40.34 3.77
4524 4667 1.705002 CCCACCTGTCAGTGACCCAA 61.705 60.000 20.43 1.10 40.34 4.12
4525 4668 2.146724 CCCACCTGTCAGTGACCCA 61.147 63.158 20.43 1.94 40.34 4.51
4526 4669 2.750350 CCCACCTGTCAGTGACCC 59.250 66.667 20.43 0.00 40.34 4.46
4527 4670 2.032681 GCCCACCTGTCAGTGACC 59.967 66.667 20.43 3.45 40.34 4.02
4528 4671 2.032681 GGCCCACCTGTCAGTGAC 59.967 66.667 16.68 16.68 40.34 3.67
4529 4672 2.075566 TTGGCCCACCTGTCAGTGA 61.076 57.895 0.00 0.00 40.34 3.41
4530 4673 1.898574 GTTGGCCCACCTGTCAGTG 60.899 63.158 0.00 0.00 36.63 3.66
4531 4674 1.645402 AAGTTGGCCCACCTGTCAGT 61.645 55.000 2.72 0.00 36.63 3.41
4532 4675 1.151450 AAGTTGGCCCACCTGTCAG 59.849 57.895 2.72 0.00 36.63 3.51
4533 4676 1.152777 CAAGTTGGCCCACCTGTCA 60.153 57.895 2.72 0.00 36.63 3.58
4534 4677 2.564721 GCAAGTTGGCCCACCTGTC 61.565 63.158 2.72 0.00 36.63 3.51
4535 4678 2.521708 GCAAGTTGGCCCACCTGT 60.522 61.111 2.72 0.00 36.63 4.00
4536 4679 1.402107 AAAGCAAGTTGGCCCACCTG 61.402 55.000 2.72 1.84 36.63 4.00
4537 4680 1.075301 AAAGCAAGTTGGCCCACCT 60.075 52.632 2.72 0.00 36.63 4.00
4538 4681 1.367471 GAAAGCAAGTTGGCCCACC 59.633 57.895 2.72 0.00 0.00 4.61
4539 4682 1.007387 CGAAAGCAAGTTGGCCCAC 60.007 57.895 0.00 0.00 0.00 4.61
4540 4683 2.199652 CCGAAAGCAAGTTGGCCCA 61.200 57.895 0.00 0.00 0.00 5.36
4541 4684 2.650778 CCGAAAGCAAGTTGGCCC 59.349 61.111 0.00 0.00 0.00 5.80
4542 4685 2.650778 CCCGAAAGCAAGTTGGCC 59.349 61.111 4.75 0.00 0.00 5.36
4543 4686 2.049156 GCCCGAAAGCAAGTTGGC 60.049 61.111 4.75 0.00 0.00 4.52
4544 4687 2.650778 GGCCCGAAAGCAAGTTGG 59.349 61.111 4.75 0.00 0.00 3.77
4545 4688 2.199652 TGGGCCCGAAAGCAAGTTG 61.200 57.895 19.37 0.00 0.00 3.16
4546 4689 2.197324 TGGGCCCGAAAGCAAGTT 59.803 55.556 19.37 0.00 0.00 2.66
4547 4690 2.597510 GTGGGCCCGAAAGCAAGT 60.598 61.111 19.37 0.00 0.00 3.16
4548 4691 3.373565 GGTGGGCCCGAAAGCAAG 61.374 66.667 19.37 0.00 0.00 4.01
4549 4692 3.897122 AGGTGGGCCCGAAAGCAA 61.897 61.111 19.37 0.00 38.74 3.91
4550 4693 4.659172 CAGGTGGGCCCGAAAGCA 62.659 66.667 19.37 0.00 38.74 3.91
4551 4694 4.660938 ACAGGTGGGCCCGAAAGC 62.661 66.667 19.37 9.80 38.74 3.51
4552 4695 2.359975 GACAGGTGGGCCCGAAAG 60.360 66.667 19.37 10.07 38.74 2.62
4553 4696 3.172106 TGACAGGTGGGCCCGAAA 61.172 61.111 19.37 0.00 38.74 3.46
4554 4697 3.636231 CTGACAGGTGGGCCCGAA 61.636 66.667 19.37 0.00 38.74 4.30
4555 4698 4.954118 ACTGACAGGTGGGCCCGA 62.954 66.667 19.37 3.06 38.74 5.14
4556 4699 4.704833 CACTGACAGGTGGGCCCG 62.705 72.222 19.37 4.81 38.74 6.13
4562 4705 1.898574 GTTGGGCCACTGACAGGTG 60.899 63.158 5.23 2.99 37.00 4.00
4563 4706 2.078665 AGTTGGGCCACTGACAGGT 61.079 57.895 5.23 0.00 0.00 4.00
4564 4707 1.601759 CAGTTGGGCCACTGACAGG 60.602 63.158 23.45 7.08 46.29 4.00
4565 4708 2.263741 GCAGTTGGGCCACTGACAG 61.264 63.158 28.71 15.14 46.29 3.51
4566 4709 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
4567 4710 2.203337 TGCAGTTGGGCCACTGAC 60.203 61.111 28.71 21.80 46.29 3.51
4568 4711 2.203337 GTGCAGTTGGGCCACTGA 60.203 61.111 28.71 16.56 46.29 3.41
4569 4712 3.297620 GGTGCAGTTGGGCCACTG 61.298 66.667 23.47 23.47 46.15 3.66
4570 4713 4.603535 GGGTGCAGTTGGGCCACT 62.604 66.667 5.23 3.94 0.00 4.00
4571 4714 4.603535 AGGGTGCAGTTGGGCCAC 62.604 66.667 5.23 1.08 0.00 5.01
4572 4715 4.601794 CAGGGTGCAGTTGGGCCA 62.602 66.667 0.00 0.00 0.00 5.36
4582 4725 1.738099 CTGACGTACTGCAGGGTGC 60.738 63.158 19.93 0.92 45.29 5.01
4583 4726 0.109086 CTCTGACGTACTGCAGGGTG 60.109 60.000 19.93 9.21 33.05 4.61
4584 4727 1.251527 CCTCTGACGTACTGCAGGGT 61.252 60.000 19.93 12.80 30.57 4.34
4585 4728 0.965866 TCCTCTGACGTACTGCAGGG 60.966 60.000 19.93 9.39 33.05 4.45
4586 4729 0.453793 CTCCTCTGACGTACTGCAGG 59.546 60.000 19.93 2.38 33.05 4.85
4587 4730 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.000 13.48 13.48 0.00 4.41
4588 4731 1.595993 GGCTCCTCTGACGTACTGCA 61.596 60.000 0.00 0.00 0.00 4.41
4589 4732 1.139947 GGCTCCTCTGACGTACTGC 59.860 63.158 0.00 0.00 0.00 4.40
4590 4733 0.736053 GAGGCTCCTCTGACGTACTG 59.264 60.000 2.15 0.00 39.80 2.74
4591 4734 0.745128 CGAGGCTCCTCTGACGTACT 60.745 60.000 9.32 0.00 40.69 2.73
4592 4735 1.025647 ACGAGGCTCCTCTGACGTAC 61.026 60.000 9.32 0.00 40.69 3.67
4593 4736 0.743701 GACGAGGCTCCTCTGACGTA 60.744 60.000 9.32 0.00 40.69 3.57
4594 4737 2.034376 ACGAGGCTCCTCTGACGT 59.966 61.111 9.32 4.69 40.69 4.34
4595 4738 2.766400 GGACGAGGCTCCTCTGACG 61.766 68.421 9.32 4.08 40.69 4.35
4596 4739 2.766400 CGGACGAGGCTCCTCTGAC 61.766 68.421 14.88 7.69 40.69 3.51
4597 4740 2.272230 ATCGGACGAGGCTCCTCTGA 62.272 60.000 21.95 21.95 40.69 3.27
4598 4741 0.535328 TATCGGACGAGGCTCCTCTG 60.535 60.000 14.09 14.09 40.69 3.35
4599 4742 0.250553 CTATCGGACGAGGCTCCTCT 60.251 60.000 9.32 1.64 40.69 3.69
4600 4743 1.238625 CCTATCGGACGAGGCTCCTC 61.239 65.000 9.32 6.95 39.55 3.71
4601 4744 1.228306 CCTATCGGACGAGGCTCCT 60.228 63.158 9.32 0.00 0.00 3.69
4602 4745 3.356837 CCTATCGGACGAGGCTCC 58.643 66.667 9.32 0.00 0.00 4.70
4606 4749 4.344474 GGCGCCTATCGGACGAGG 62.344 72.222 22.15 3.84 38.94 4.63
4607 4750 4.344474 GGGCGCCTATCGGACGAG 62.344 72.222 28.56 0.00 38.94 4.18
4608 4751 4.889112 AGGGCGCCTATCGGACGA 62.889 66.667 28.56 0.00 38.94 4.20
4609 4752 3.441011 AAAGGGCGCCTATCGGACG 62.441 63.158 28.56 0.00 38.94 4.79
4610 4753 1.887707 CAAAGGGCGCCTATCGGAC 60.888 63.158 28.56 7.55 38.94 4.79
4611 4754 2.061578 TCAAAGGGCGCCTATCGGA 61.062 57.895 28.56 14.89 38.94 4.55
4612 4755 1.887707 GTCAAAGGGCGCCTATCGG 60.888 63.158 28.56 12.67 38.94 4.18
4613 4756 1.153449 TGTCAAAGGGCGCCTATCG 60.153 57.895 28.56 13.19 42.12 2.92
4614 4757 1.440145 GCTGTCAAAGGGCGCCTATC 61.440 60.000 28.56 10.16 31.13 2.08
4615 4758 1.452108 GCTGTCAAAGGGCGCCTAT 60.452 57.895 28.56 13.18 31.13 2.57
4616 4759 2.046314 GCTGTCAAAGGGCGCCTA 60.046 61.111 28.56 4.00 31.13 3.93
4621 4764 0.739112 CTCTCTCGCTGTCAAAGGGC 60.739 60.000 0.00 0.00 38.71 5.19
4622 4765 0.605589 ACTCTCTCGCTGTCAAAGGG 59.394 55.000 0.00 0.00 40.19 3.95
4623 4766 1.270826 TGACTCTCTCGCTGTCAAAGG 59.729 52.381 0.00 0.00 37.71 3.11
4669 4812 4.921834 GGCACGAGGAGGAAGAAG 57.078 61.111 0.00 0.00 0.00 2.85
4704 4847 3.117131 AGGAGGAAAACTGGAACAATGGT 60.117 43.478 0.00 0.00 38.70 3.55
4705 4848 3.500343 AGGAGGAAAACTGGAACAATGG 58.500 45.455 0.00 0.00 38.70 3.16
4706 4849 5.711976 ACATAGGAGGAAAACTGGAACAATG 59.288 40.000 0.00 0.00 38.70 2.82
4716 4859 3.057526 GCACCAACACATAGGAGGAAAAC 60.058 47.826 0.00 0.00 0.00 2.43
4741 4889 1.765161 CTCTGCCACACACACACACG 61.765 60.000 0.00 0.00 0.00 4.49
4753 4901 0.400525 CCCTCCCCTATTCTCTGCCA 60.401 60.000 0.00 0.00 0.00 4.92
4914 5062 1.002379 AGGCTGGCAAGAGCAAGAG 60.002 57.895 3.38 0.00 45.14 2.85
4915 5063 1.002868 GAGGCTGGCAAGAGCAAGA 60.003 57.895 3.38 0.00 45.14 3.02
4916 5064 2.045131 GGAGGCTGGCAAGAGCAAG 61.045 63.158 3.38 0.00 45.10 4.01
4917 5065 2.034687 GGAGGCTGGCAAGAGCAA 59.965 61.111 3.38 0.00 44.61 3.91
4918 5066 4.039092 GGGAGGCTGGCAAGAGCA 62.039 66.667 3.38 0.00 44.61 4.26
4919 5067 4.811364 GGGGAGGCTGGCAAGAGC 62.811 72.222 3.38 0.00 38.34 4.09
4971 6049 1.409427 AGGAGTACGAATACAGGCAGC 59.591 52.381 0.00 0.00 33.30 5.25
5038 6121 7.915508 TGCTGCACACATACTTGTATAATAAC 58.084 34.615 0.00 0.00 33.76 1.89
5039 6122 8.394877 GTTGCTGCACACATACTTGTATAATAA 58.605 33.333 0.00 0.00 33.76 1.40
5040 6123 7.254286 CGTTGCTGCACACATACTTGTATAATA 60.254 37.037 0.00 0.00 33.76 0.98
5041 6124 6.456853 CGTTGCTGCACACATACTTGTATAAT 60.457 38.462 0.00 0.00 33.76 1.28
5042 6125 5.163903 CGTTGCTGCACACATACTTGTATAA 60.164 40.000 0.00 0.00 33.76 0.98
5043 6126 4.328712 CGTTGCTGCACACATACTTGTATA 59.671 41.667 0.00 0.00 33.76 1.47
5044 6127 3.125146 CGTTGCTGCACACATACTTGTAT 59.875 43.478 0.00 0.00 33.76 2.29
5045 6128 2.478514 CGTTGCTGCACACATACTTGTA 59.521 45.455 0.00 0.00 33.76 2.41
5046 6129 1.264020 CGTTGCTGCACACATACTTGT 59.736 47.619 0.00 0.00 36.15 3.16
5047 6130 1.400113 CCGTTGCTGCACACATACTTG 60.400 52.381 0.00 0.00 0.00 3.16
5048 6131 0.874390 CCGTTGCTGCACACATACTT 59.126 50.000 0.00 0.00 0.00 2.24
5049 6132 1.577328 GCCGTTGCTGCACACATACT 61.577 55.000 0.00 0.00 33.53 2.12
5050 6133 1.154225 GCCGTTGCTGCACACATAC 60.154 57.895 0.00 0.00 33.53 2.39
5051 6134 2.331893 GGCCGTTGCTGCACACATA 61.332 57.895 0.00 0.00 37.74 2.29
5052 6135 3.673484 GGCCGTTGCTGCACACAT 61.673 61.111 0.00 0.00 37.74 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.