Multiple sequence alignment - TraesCS7A01G167300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G167300 chr7A 100.000 8963 0 0 1 8963 122487129 122496091 0.000000e+00 16552.0
1 TraesCS7A01G167300 chr7A 90.780 423 19 8 8556 8962 382878593 382879011 1.700000e-151 547.0
2 TraesCS7A01G167300 chr7A 82.201 309 42 7 2834 3134 122489579 122489882 4.150000e-63 254.0
3 TraesCS7A01G167300 chr7A 82.201 309 42 7 2451 2754 122489962 122490262 4.150000e-63 254.0
4 TraesCS7A01G167300 chr7A 93.143 175 6 1 8388 8556 5532717 5532891 1.490000e-62 252.0
5 TraesCS7A01G167300 chr7A 88.991 109 11 1 6717 6825 610942475 610942368 5.650000e-27 134.0
6 TraesCS7A01G167300 chr7A 81.301 123 12 7 6849 6970 610939087 610938975 1.240000e-13 89.8
7 TraesCS7A01G167300 chr7B 95.730 4192 146 20 4213 8381 79304253 79308434 0.000000e+00 6719.0
8 TraesCS7A01G167300 chr7B 93.212 3300 129 42 972 4229 79300822 79304068 0.000000e+00 4765.0
9 TraesCS7A01G167300 chr7B 88.006 642 61 8 1 627 79299847 79300487 0.000000e+00 745.0
10 TraesCS7A01G167300 chr7B 80.160 499 70 21 426 901 79300330 79300822 6.660000e-91 346.0
11 TraesCS7A01G167300 chr7B 83.819 309 37 7 2834 3134 79302293 79302596 1.910000e-71 281.0
12 TraesCS7A01G167300 chr7B 81.529 314 42 9 2446 2754 79302670 79302972 2.500000e-60 244.0
13 TraesCS7A01G167300 chr7B 91.667 96 7 1 6730 6825 570175209 570175115 2.030000e-26 132.0
14 TraesCS7A01G167300 chr7B 100.000 31 0 0 3229 3259 79303039 79303069 3.500000e-04 58.4
15 TraesCS7A01G167300 chr7D 94.046 3443 134 20 2446 5848 118148194 118151605 0.000000e+00 5156.0
16 TraesCS7A01G167300 chr7D 95.084 2441 91 13 5845 8283 118151686 118154099 0.000000e+00 3816.0
17 TraesCS7A01G167300 chr7D 87.923 1714 105 39 539 2188 118145816 118147491 0.000000e+00 1925.0
18 TraesCS7A01G167300 chr7D 95.368 950 42 2 2185 3134 118147551 118148498 0.000000e+00 1509.0
19 TraesCS7A01G167300 chr7D 89.643 280 27 2 1 279 118131376 118131654 1.110000e-93 355.0
20 TraesCS7A01G167300 chr7D 83.495 309 38 7 2834 3134 118147817 118148120 8.860000e-70 276.0
21 TraesCS7A01G167300 chr7D 80.892 314 47 7 2446 2754 118148572 118148877 1.500000e-57 235.0
22 TraesCS7A01G167300 chr7D 95.918 98 4 0 8284 8381 118154295 118154392 9.310000e-35 159.0
23 TraesCS7A01G167300 chr1B 91.258 469 15 10 8510 8963 685973595 685974052 4.600000e-172 616.0
24 TraesCS7A01G167300 chr5A 86.070 603 37 17 8388 8962 614180387 614179804 9.950000e-169 604.0
25 TraesCS7A01G167300 chr5A 84.480 625 40 23 8388 8962 322362979 322362362 1.690000e-156 564.0
26 TraesCS7A01G167300 chr5A 83.761 585 38 26 8388 8961 663559624 663559086 1.340000e-137 501.0
27 TraesCS7A01G167300 chr3A 92.494 413 12 7 8564 8962 93060380 93060787 2.810000e-159 573.0
28 TraesCS7A01G167300 chr3A 90.047 422 18 9 8556 8962 695336146 695335734 7.970000e-145 525.0
29 TraesCS7A01G167300 chr3A 94.083 169 9 1 8389 8557 693516713 693516880 1.150000e-63 255.0
30 TraesCS7A01G167300 chr2A 91.232 422 19 8 8556 8961 243033307 243032888 7.860000e-155 558.0
31 TraesCS7A01G167300 chr2A 91.017 423 18 9 8556 8962 242993236 242993654 3.660000e-153 553.0
32 TraesCS7A01G167300 chr2A 90.566 424 21 8 8556 8962 242989432 242989853 2.200000e-150 544.0
33 TraesCS7A01G167300 chr6A 90.865 416 19 9 8556 8961 163741216 163741622 2.850000e-149 540.0
34 TraesCS7A01G167300 chr6A 94.706 170 8 1 8388 8557 465079591 465079423 6.900000e-66 263.0
35 TraesCS7A01G167300 chr6A 93.642 173 9 1 8387 8557 507611924 507612096 3.210000e-64 257.0
36 TraesCS7A01G167300 chr6A 91.908 173 10 2 8388 8557 304723199 304723370 1.160000e-58 239.0
37 TraesCS7A01G167300 chr1A 90.521 422 18 8 8556 8961 361790113 361789698 1.020000e-148 538.0
38 TraesCS7A01G167300 chr6D 92.308 169 11 2 8388 8556 381988610 381988444 1.160000e-58 239.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G167300 chr7A 122487129 122496091 8962 False 16552.000000 16552 100.000000 1 8963 1 chr7A.!!$F2 8962
1 TraesCS7A01G167300 chr7A 122489579 122490262 683 False 254.000000 254 82.201000 2451 3134 2 chr7A.!!$F4 683
2 TraesCS7A01G167300 chr7B 79299847 79308434 8587 False 1879.771429 6719 88.922286 1 8381 7 chr7B.!!$F1 8380
3 TraesCS7A01G167300 chr7D 118145816 118154392 8576 False 1868.000000 5156 90.389429 539 8381 7 chr7D.!!$F2 7842
4 TraesCS7A01G167300 chr5A 614179804 614180387 583 True 604.000000 604 86.070000 8388 8962 1 chr5A.!!$R2 574
5 TraesCS7A01G167300 chr5A 322362362 322362979 617 True 564.000000 564 84.480000 8388 8962 1 chr5A.!!$R1 574
6 TraesCS7A01G167300 chr5A 663559086 663559624 538 True 501.000000 501 83.761000 8388 8961 1 chr5A.!!$R3 573
7 TraesCS7A01G167300 chr2A 242989432 242993654 4222 False 548.500000 553 90.791500 8556 8962 2 chr2A.!!$F1 406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.107831 AGCCAGTACGCTTCAAACCA 59.892 50.000 0.00 0.00 34.73 3.67 F
1108 1285 0.107017 CTCATCATCCACCACCCACC 60.107 60.000 0.00 0.00 0.00 4.61 F
1554 1771 0.320946 TAAAGCTGGTGTACACGGCC 60.321 55.000 27.36 14.38 33.46 6.13 F
1663 1880 0.381801 CCTCGGTTGCAATGGTATGC 59.618 55.000 0.59 0.00 46.58 3.14 F
1673 1898 0.464373 AATGGTATGCACCTCGCTGG 60.464 55.000 0.00 0.00 45.98 4.85 F
1975 2206 1.308047 TCTGCGATGCAAACACAGTT 58.692 45.000 10.50 0.00 38.41 3.16 F
2304 2598 4.957759 ATTTGCGGTAACTTGTATGACC 57.042 40.909 0.00 0.00 0.00 4.02 F
4086 4788 1.043022 CTTGCCTGCCAGAAGGTTTT 58.957 50.000 0.00 0.00 39.75 2.43 F
4984 5896 0.554305 TCCGTAGTCCCTGATGCCTA 59.446 55.000 0.00 0.00 0.00 3.93 F
4985 5897 0.962489 CCGTAGTCCCTGATGCCTAG 59.038 60.000 0.00 0.00 0.00 3.02 F
6826 7828 0.179105 AAGATCTCGCAGCAGCTCTG 60.179 55.000 0.00 8.34 45.62 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1183 1361 0.040058 TGCGGGGAAGTGGAGTAGTA 59.960 55.000 0.00 0.0 0.00 1.82 R
2106 2337 1.021390 GTCGTTGTCCCTGGCATGAG 61.021 60.000 0.00 0.0 0.00 2.90 R
2426 2720 8.668510 ATGTTGACAGGAGCACTAATAAATAG 57.331 34.615 0.00 0.0 37.66 1.73 R
3565 4267 8.884124 ATGGAAAACCAGATCTAAATGAGAAA 57.116 30.769 0.00 0.0 37.85 2.52 R
3978 4680 8.555361 GCAGGAATTCATCATAACTAAGAGAAC 58.445 37.037 7.93 0.0 0.00 3.01 R
4086 4788 3.319198 GGCAAGGAGGGTGACGGA 61.319 66.667 0.00 0.0 0.00 4.69 R
4423 5334 2.662866 AGGACCAATGCTCATTCATGG 58.337 47.619 0.00 0.0 0.00 3.66 R
5813 6730 0.392336 GCAATTTGTTCCCACTGGCA 59.608 50.000 0.00 0.0 0.00 4.92 R
6688 7690 0.035881 ATGGGCATACTGATCGCCTG 59.964 55.000 8.26 0.0 45.50 4.85 R
7279 8281 0.099968 CTTCATGTGATGCCAAGCCG 59.900 55.000 0.00 0.0 0.00 5.52 R
8418 9627 0.035317 TCTGGTGTGCCATCAGTGTC 59.965 55.000 13.14 0.0 42.61 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.107831 AGCCAGTACGCTTCAAACCA 59.892 50.000 0.00 0.00 34.73 3.67
72 73 5.131067 AGTTCTGTAGCATAGTGATCGGTA 58.869 41.667 0.00 0.00 0.00 4.02
79 80 2.029020 GCATAGTGATCGGTATCTGGCA 60.029 50.000 0.00 0.00 32.93 4.92
90 91 2.548067 GGTATCTGGCAGTAATGGTCGG 60.548 54.545 15.27 0.00 0.00 4.79
97 98 1.134521 GCAGTAATGGTCGGTGATCCA 60.135 52.381 0.00 0.00 38.14 3.41
99 100 3.808728 CAGTAATGGTCGGTGATCCAAT 58.191 45.455 0.00 0.00 37.27 3.16
126 127 1.691196 ACCCCATGTTCATAATGGCG 58.309 50.000 0.00 0.00 42.85 5.69
156 157 4.142049 GGGAACAATTGTCACCAACTTTCA 60.142 41.667 25.53 0.00 32.26 2.69
166 167 3.901844 TCACCAACTTTCAGTAGCTACCT 59.098 43.478 20.31 5.20 0.00 3.08
196 197 0.661780 GCACTCGCGTATAGCTCCAG 60.662 60.000 5.77 0.00 45.59 3.86
198 199 0.945813 ACTCGCGTATAGCTCCAGAC 59.054 55.000 5.77 0.00 45.59 3.51
202 203 0.384477 GCGTATAGCTCCAGACGTCG 60.384 60.000 10.46 5.16 44.04 5.12
204 205 1.070710 CGTATAGCTCCAGACGTCGAC 60.071 57.143 10.46 5.18 0.00 4.20
252 253 3.272574 TCCTTCAGCTCACAATCATCC 57.727 47.619 0.00 0.00 0.00 3.51
283 284 3.932289 ACGCTTGCACGTACAGTC 58.068 55.556 0.00 0.00 46.19 3.51
312 314 1.524961 GTCCCACACACCACTCACA 59.475 57.895 0.00 0.00 0.00 3.58
322 324 2.705658 ACACCACTCACAAGAATGGAGA 59.294 45.455 0.00 0.00 36.04 3.71
329 331 6.152323 CCACTCACAAGAATGGAGAATTTCAT 59.848 38.462 0.00 0.00 33.80 2.57
358 360 5.420739 GTCCCCAATAAACAATTAAGGCAGA 59.579 40.000 0.00 0.00 0.00 4.26
389 391 6.092122 TGGTATTTTCAGCTCTCATACGTTTG 59.908 38.462 0.00 0.00 0.00 2.93
392 394 2.337583 TCAGCTCTCATACGTTTGCAC 58.662 47.619 0.00 0.00 0.00 4.57
406 408 3.062124 CGTTTGCACGCTTGTACTTTTTC 60.062 43.478 0.00 0.00 40.18 2.29
407 409 2.376915 TGCACGCTTGTACTTTTTCG 57.623 45.000 0.00 0.00 0.00 3.46
408 410 1.003331 TGCACGCTTGTACTTTTTCGG 60.003 47.619 0.00 0.00 0.00 4.30
409 411 1.670326 CACGCTTGTACTTTTTCGGC 58.330 50.000 0.00 0.00 0.00 5.54
410 412 1.003331 CACGCTTGTACTTTTTCGGCA 60.003 47.619 0.00 0.00 0.00 5.69
412 414 1.263217 CGCTTGTACTTTTTCGGCAGT 59.737 47.619 0.00 0.00 0.00 4.40
413 415 2.286772 CGCTTGTACTTTTTCGGCAGTT 60.287 45.455 0.00 0.00 0.00 3.16
417 422 5.508200 TTGTACTTTTTCGGCAGTTGAAT 57.492 34.783 0.00 0.00 0.00 2.57
447 452 2.863132 TACCCACAAAACGGCATACT 57.137 45.000 0.00 0.00 0.00 2.12
493 498 8.849168 TCAATTCACTGTACATTCTCACAAAAT 58.151 29.630 0.00 0.00 0.00 1.82
495 500 6.558771 TCACTGTACATTCTCACAAAATGG 57.441 37.500 0.00 0.00 38.23 3.16
501 570 6.658816 TGTACATTCTCACAAAATGGCATACT 59.341 34.615 0.00 0.00 38.23 2.12
516 585 8.523915 AATGGCATACTTTATCAACATCTTCA 57.476 30.769 0.00 0.00 0.00 3.02
517 586 8.701908 ATGGCATACTTTATCAACATCTTCAT 57.298 30.769 0.00 0.00 0.00 2.57
535 604 7.719778 TCTTCATTGATTCATTCTCCATACG 57.280 36.000 0.00 0.00 0.00 3.06
577 647 4.504864 CCTTACAACATCTTCTGTGACCCA 60.505 45.833 0.00 0.00 38.39 4.51
583 653 1.186200 TCTTCTGTGACCCATCCTCG 58.814 55.000 0.00 0.00 0.00 4.63
609 679 2.552268 CCACAAAACGCCGTACCG 59.448 61.111 0.00 0.00 0.00 4.02
615 685 1.928503 CAAAACGCCGTACCGTATCAT 59.071 47.619 0.00 0.00 41.16 2.45
627 697 4.913335 ACCGTATCATCATCTTACGTGT 57.087 40.909 0.00 0.00 37.58 4.49
646 717 3.936453 GTGTTCCGTATATCAACAAGGCA 59.064 43.478 0.00 0.00 31.95 4.75
652 723 4.051922 CGTATATCAACAAGGCAGGACTC 58.948 47.826 0.00 0.00 0.00 3.36
684 755 2.699954 CGAAGGTCTGCTTACATGGTT 58.300 47.619 0.00 0.00 0.00 3.67
714 785 0.179156 CATTGCCCGTGTCTGAATGC 60.179 55.000 0.00 0.00 0.00 3.56
715 786 1.315257 ATTGCCCGTGTCTGAATGCC 61.315 55.000 0.00 0.00 0.00 4.40
723 794 3.002791 CGTGTCTGAATGCCTACAATGT 58.997 45.455 0.00 0.00 0.00 2.71
729 800 5.065218 GTCTGAATGCCTACAATGTAACCAG 59.935 44.000 0.00 0.00 0.00 4.00
741 812 6.423182 ACAATGTAACCAGTATTGCATAGGT 58.577 36.000 0.00 0.00 34.28 3.08
809 884 9.997482 GTACACAACAAAGAATAAAGTCAGAAA 57.003 29.630 0.00 0.00 0.00 2.52
824 919 8.566008 AAAGTCAGAAATTTTCGACATTTGAG 57.434 30.769 23.32 0.76 36.42 3.02
860 956 7.330900 GAGCCCAAGATCCATTATTATGATG 57.669 40.000 0.00 0.00 33.37 3.07
901 1078 1.344114 GCAAGTTGCCATTCCTTTGGA 59.656 47.619 17.36 0.00 39.25 3.53
902 1079 2.611224 GCAAGTTGCCATTCCTTTGGAG 60.611 50.000 17.36 0.00 39.25 3.86
903 1080 2.629617 CAAGTTGCCATTCCTTTGGAGT 59.370 45.455 0.00 0.00 39.25 3.85
904 1081 3.806949 AGTTGCCATTCCTTTGGAGTA 57.193 42.857 0.00 0.00 39.25 2.59
905 1082 3.690460 AGTTGCCATTCCTTTGGAGTAG 58.310 45.455 0.00 0.00 39.25 2.57
906 1083 2.128771 TGCCATTCCTTTGGAGTAGC 57.871 50.000 0.00 0.00 39.25 3.58
907 1084 1.340991 TGCCATTCCTTTGGAGTAGCC 60.341 52.381 0.00 0.00 39.25 3.93
915 1092 3.077907 TGGAGTAGCCAACAGCCC 58.922 61.111 0.00 0.00 45.87 5.19
916 1093 1.845664 TGGAGTAGCCAACAGCCCA 60.846 57.895 0.00 0.00 45.87 5.36
917 1094 1.378762 GGAGTAGCCAACAGCCCAA 59.621 57.895 0.00 0.00 45.47 4.12
918 1095 0.960861 GGAGTAGCCAACAGCCCAAC 60.961 60.000 0.00 0.00 45.47 3.77
919 1096 0.250727 GAGTAGCCAACAGCCCAACA 60.251 55.000 0.00 0.00 45.47 3.33
920 1097 0.537371 AGTAGCCAACAGCCCAACAC 60.537 55.000 0.00 0.00 45.47 3.32
921 1098 0.537371 GTAGCCAACAGCCCAACACT 60.537 55.000 0.00 0.00 45.47 3.55
922 1099 0.537143 TAGCCAACAGCCCAACACTG 60.537 55.000 0.00 0.00 45.47 3.66
926 1103 3.330192 ACAGCCCAACACTGTCCA 58.670 55.556 0.00 0.00 45.06 4.02
927 1104 1.612513 ACAGCCCAACACTGTCCAA 59.387 52.632 0.00 0.00 45.06 3.53
928 1105 0.466189 ACAGCCCAACACTGTCCAAG 60.466 55.000 0.00 0.00 45.06 3.61
929 1106 0.466189 CAGCCCAACACTGTCCAAGT 60.466 55.000 0.00 0.00 40.93 3.16
930 1107 0.258774 AGCCCAACACTGTCCAAGTT 59.741 50.000 0.00 0.00 36.83 2.66
931 1108 0.668535 GCCCAACACTGTCCAAGTTC 59.331 55.000 0.00 0.00 36.83 3.01
932 1109 1.318576 CCCAACACTGTCCAAGTTCC 58.681 55.000 0.00 0.00 36.83 3.62
933 1110 1.409521 CCCAACACTGTCCAAGTTCCA 60.410 52.381 0.00 0.00 36.83 3.53
934 1111 2.374184 CCAACACTGTCCAAGTTCCAA 58.626 47.619 0.00 0.00 36.83 3.53
935 1112 2.358898 CCAACACTGTCCAAGTTCCAAG 59.641 50.000 0.00 0.00 36.83 3.61
936 1113 1.680338 ACACTGTCCAAGTTCCAAGC 58.320 50.000 0.00 0.00 36.83 4.01
937 1114 1.212935 ACACTGTCCAAGTTCCAAGCT 59.787 47.619 0.00 0.00 36.83 3.74
938 1115 2.438021 ACACTGTCCAAGTTCCAAGCTA 59.562 45.455 0.00 0.00 36.83 3.32
939 1116 3.073062 ACACTGTCCAAGTTCCAAGCTAT 59.927 43.478 0.00 0.00 36.83 2.97
940 1117 3.686726 CACTGTCCAAGTTCCAAGCTATC 59.313 47.826 0.00 0.00 36.83 2.08
941 1118 3.327757 ACTGTCCAAGTTCCAAGCTATCA 59.672 43.478 0.00 0.00 34.57 2.15
942 1119 3.674997 TGTCCAAGTTCCAAGCTATCAC 58.325 45.455 0.00 0.00 0.00 3.06
943 1120 3.327757 TGTCCAAGTTCCAAGCTATCACT 59.672 43.478 0.00 0.00 0.00 3.41
944 1121 3.686726 GTCCAAGTTCCAAGCTATCACTG 59.313 47.826 0.00 0.00 0.00 3.66
945 1122 3.327757 TCCAAGTTCCAAGCTATCACTGT 59.672 43.478 0.00 0.00 0.00 3.55
946 1123 3.686726 CCAAGTTCCAAGCTATCACTGTC 59.313 47.826 0.00 0.00 0.00 3.51
947 1124 3.618690 AGTTCCAAGCTATCACTGTCC 57.381 47.619 0.00 0.00 0.00 4.02
948 1125 2.906389 AGTTCCAAGCTATCACTGTCCA 59.094 45.455 0.00 0.00 0.00 4.02
949 1126 3.327757 AGTTCCAAGCTATCACTGTCCAA 59.672 43.478 0.00 0.00 0.00 3.53
950 1127 4.072131 GTTCCAAGCTATCACTGTCCAAA 58.928 43.478 0.00 0.00 0.00 3.28
951 1128 4.574674 TCCAAGCTATCACTGTCCAAAT 57.425 40.909 0.00 0.00 0.00 2.32
952 1129 4.922206 TCCAAGCTATCACTGTCCAAATT 58.078 39.130 0.00 0.00 0.00 1.82
953 1130 6.061022 TCCAAGCTATCACTGTCCAAATTA 57.939 37.500 0.00 0.00 0.00 1.40
954 1131 6.480763 TCCAAGCTATCACTGTCCAAATTAA 58.519 36.000 0.00 0.00 0.00 1.40
955 1132 6.945435 TCCAAGCTATCACTGTCCAAATTAAA 59.055 34.615 0.00 0.00 0.00 1.52
956 1133 7.450014 TCCAAGCTATCACTGTCCAAATTAAAA 59.550 33.333 0.00 0.00 0.00 1.52
957 1134 8.087750 CCAAGCTATCACTGTCCAAATTAAAAA 58.912 33.333 0.00 0.00 0.00 1.94
971 1148 3.777556 AAAAAGAGGCCCGGCAAG 58.222 55.556 12.58 0.00 0.00 4.01
1036 1213 2.773993 TCCCAATCCGACCTGTTTAC 57.226 50.000 0.00 0.00 0.00 2.01
1038 1215 2.235402 TCCCAATCCGACCTGTTTACTC 59.765 50.000 0.00 0.00 0.00 2.59
1056 1233 2.245287 ACTCCGACCCTCCTTCTATTCT 59.755 50.000 0.00 0.00 0.00 2.40
1061 1238 4.442192 CCGACCCTCCTTCTATTCTTCTTG 60.442 50.000 0.00 0.00 0.00 3.02
1066 1243 4.444164 CCTCCTTCTATTCTTCTTGGCCTC 60.444 50.000 3.32 0.00 0.00 4.70
1067 1244 4.366267 TCCTTCTATTCTTCTTGGCCTCT 58.634 43.478 3.32 0.00 0.00 3.69
1068 1245 4.163078 TCCTTCTATTCTTCTTGGCCTCTG 59.837 45.833 3.32 0.00 0.00 3.35
1069 1246 4.163078 CCTTCTATTCTTCTTGGCCTCTGA 59.837 45.833 3.32 0.00 0.00 3.27
1103 1280 2.038295 GGGATCTCTCATCATCCACCAC 59.962 54.545 0.00 0.00 40.55 4.16
1107 1284 0.911769 TCTCATCATCCACCACCCAC 59.088 55.000 0.00 0.00 0.00 4.61
1108 1285 0.107017 CTCATCATCCACCACCCACC 60.107 60.000 0.00 0.00 0.00 4.61
1109 1286 1.076777 CATCATCCACCACCCACCC 60.077 63.158 0.00 0.00 0.00 4.61
1110 1287 1.543642 ATCATCCACCACCCACCCA 60.544 57.895 0.00 0.00 0.00 4.51
1111 1288 1.863155 ATCATCCACCACCCACCCAC 61.863 60.000 0.00 0.00 0.00 4.61
1112 1289 3.264845 ATCCACCACCCACCCACC 61.265 66.667 0.00 0.00 0.00 4.61
1115 1292 4.284550 CACCACCCACCCACCCTG 62.285 72.222 0.00 0.00 0.00 4.45
1185 1363 2.107141 CGCCTGCCTGCCTACTAC 59.893 66.667 0.00 0.00 0.00 2.73
1186 1364 2.427245 CGCCTGCCTGCCTACTACT 61.427 63.158 0.00 0.00 0.00 2.57
1420 1635 1.389609 GCCCTCGACATCGGAGGTAA 61.390 60.000 14.52 0.00 40.29 2.85
1422 1637 1.687123 CCCTCGACATCGGAGGTAATT 59.313 52.381 14.52 0.00 40.29 1.40
1423 1638 2.288273 CCCTCGACATCGGAGGTAATTC 60.288 54.545 14.52 0.00 40.29 2.17
1426 1641 4.277672 CCTCGACATCGGAGGTAATTCTTA 59.722 45.833 0.00 0.00 40.29 2.10
1506 1723 2.898920 TTATGCTGCTGGCTGAGGGC 62.899 60.000 0.00 0.00 42.39 5.19
1554 1771 0.320946 TAAAGCTGGTGTACACGGCC 60.321 55.000 27.36 14.38 33.46 6.13
1635 1852 3.277211 CTTCGACTTCGTCCGGGCA 62.277 63.158 6.96 0.00 40.80 5.36
1650 1867 4.021925 GCACAAGGCCTCCTCGGT 62.022 66.667 5.23 0.00 36.11 4.69
1656 1873 2.044946 GGCCTCCTCGGTTGCAAT 60.045 61.111 0.59 0.00 34.25 3.56
1661 1878 1.134098 CCTCCTCGGTTGCAATGGTAT 60.134 52.381 0.59 0.00 0.00 2.73
1663 1880 0.381801 CCTCGGTTGCAATGGTATGC 59.618 55.000 0.59 0.00 46.58 3.14
1673 1898 0.464373 AATGGTATGCACCTCGCTGG 60.464 55.000 0.00 0.00 45.98 4.85
1690 1915 3.803082 GCTGCAGCGCCGAATTGA 61.803 61.111 25.23 0.00 0.00 2.57
1704 1929 6.486248 CGCCGAATTGATTGATTCTTCTTTA 58.514 36.000 0.00 0.00 34.58 1.85
1705 1930 6.412072 CGCCGAATTGATTGATTCTTCTTTAC 59.588 38.462 0.00 0.00 34.58 2.01
1706 1931 6.693113 GCCGAATTGATTGATTCTTCTTTACC 59.307 38.462 0.00 0.00 34.58 2.85
1707 1932 7.415653 GCCGAATTGATTGATTCTTCTTTACCT 60.416 37.037 0.00 0.00 34.58 3.08
1800 2026 6.562608 TGGAAAATAAGTAGGATAGGATGGCT 59.437 38.462 0.00 0.00 0.00 4.75
1898 2128 7.792374 TGTAGCTCATGATCAATTTTAGGAC 57.208 36.000 0.00 0.00 0.00 3.85
1928 2158 7.336931 GGGAATCTAGAATTTAGCTGTTGACAA 59.663 37.037 0.00 0.00 0.00 3.18
1948 2179 3.658757 ACAGTTACGGCATTTGCAATT 57.341 38.095 0.00 0.00 44.36 2.32
1955 2186 2.070783 CGGCATTTGCAATTGCTCTTT 58.929 42.857 33.16 10.44 44.36 2.52
1975 2206 1.308047 TCTGCGATGCAAACACAGTT 58.692 45.000 10.50 0.00 38.41 3.16
2106 2337 5.957842 TCATGGGTTGAAGTGTAACATTC 57.042 39.130 0.00 0.00 41.43 2.67
2169 2400 7.765695 ATGACACTGAAGGTATGATTTGTTT 57.234 32.000 0.00 0.00 0.00 2.83
2304 2598 4.957759 ATTTGCGGTAACTTGTATGACC 57.042 40.909 0.00 0.00 0.00 4.02
2426 2720 7.556844 TCAACATCCCTGAAACTCTATAAGAC 58.443 38.462 0.00 0.00 0.00 3.01
3469 4171 6.256053 ACCACATACCTTCTCATTTGGATTT 58.744 36.000 0.00 0.00 0.00 2.17
3509 4211 7.990917 TCTTTCACATTGTAACACTGCTTAAA 58.009 30.769 0.00 0.00 0.00 1.52
4086 4788 1.043022 CTTGCCTGCCAGAAGGTTTT 58.957 50.000 0.00 0.00 39.75 2.43
4135 4837 5.534654 TGCAGTTCTATGTACTTGCCTTTTT 59.465 36.000 0.00 0.00 0.00 1.94
4136 4838 6.712998 TGCAGTTCTATGTACTTGCCTTTTTA 59.287 34.615 0.00 0.00 0.00 1.52
4153 4855 7.281100 TGCCTTTTTATTTTGTGGTAGTTTTGG 59.719 33.333 0.00 0.00 0.00 3.28
4178 4880 1.623811 CCAGTAGTGCCCTAGTGTGTT 59.376 52.381 9.78 0.00 41.27 3.32
4253 5156 7.337689 TCATTGCTTGCTTATGATTCTGTTACT 59.662 33.333 6.81 0.00 0.00 2.24
4260 5163 6.538742 TGCTTATGATTCTGTTACTACTTGGC 59.461 38.462 0.00 0.00 0.00 4.52
4342 5251 3.550437 ATGTCTACTGGGAGCATTGTC 57.450 47.619 0.00 0.00 0.00 3.18
4379 5288 9.577110 TTGATGAAGCACATTGAAATCTTTATC 57.423 29.630 0.00 0.00 39.56 1.75
4437 5348 3.479489 TCGCATACCATGAATGAGCATT 58.521 40.909 11.03 0.00 0.00 3.56
4636 5547 5.186198 AGTGAGTTTATGTTATGTGCTCCC 58.814 41.667 0.00 0.00 0.00 4.30
4727 5638 7.651704 CCTCGCTTTATTGGAAGAAAAGAAAAA 59.348 33.333 0.00 0.00 33.05 1.94
4793 5704 8.891720 AGTAGTATAACGACTTTTACTGGAGAG 58.108 37.037 0.00 0.00 29.60 3.20
4818 5729 4.721776 AGAGGCATAGGGTTTACTCATTCA 59.278 41.667 0.00 0.00 0.00 2.57
4984 5896 0.554305 TCCGTAGTCCCTGATGCCTA 59.446 55.000 0.00 0.00 0.00 3.93
4985 5897 0.962489 CCGTAGTCCCTGATGCCTAG 59.038 60.000 0.00 0.00 0.00 3.02
5006 5918 7.201875 GCCTAGTATAGAAAAGACTGAAGAGCT 60.202 40.741 0.00 0.00 42.77 4.09
5041 5953 1.209019 TCTGCTTCATCTTCTCCAGCC 59.791 52.381 0.00 0.00 0.00 4.85
5134 6048 8.576442 AGTTGTAAAAGACATTATGGTTTCTGG 58.424 33.333 0.00 0.00 38.07 3.86
5246 6161 8.682936 AAATATGGGTTCATATCACACTCTTC 57.317 34.615 0.00 0.00 43.61 2.87
5377 6292 7.476540 TTTCTTATGCACTAGACTTCTGGTA 57.523 36.000 0.00 0.00 35.39 3.25
5497 6414 8.084985 CCTTAAGAGGATTCTAAGAAACTCCT 57.915 38.462 3.36 0.00 46.74 3.69
5701 6618 2.100584 CCTCGAGGAATCTCAAGAGGTG 59.899 54.545 28.21 0.00 40.12 4.00
5820 6737 1.540707 TGTGCATAATGTGTGCCAGTG 59.459 47.619 0.00 0.00 41.83 3.66
5835 6752 1.411977 CCAGTGGGAACAAATTGCACA 59.588 47.619 0.00 0.00 46.06 4.57
5850 6851 8.389603 ACAAATTGCACACATTTTCAAGTAAAG 58.610 29.630 0.00 0.00 29.23 1.85
5858 6859 8.128582 CACACATTTTCAAGTAAAGCAGAAGTA 58.871 33.333 0.00 0.00 0.00 2.24
5887 6888 8.375506 GGACTGATCTACCATTCCATTTGTATA 58.624 37.037 0.00 0.00 36.32 1.47
5954 6956 5.744171 TGCATACAAGTCATGTGAATAGGT 58.256 37.500 0.00 0.00 43.77 3.08
6092 7094 1.457303 GTGACATCAGCAGACGAACAC 59.543 52.381 0.00 0.00 0.00 3.32
6165 7167 2.038295 AGCATGATAGAGGTTAGCCAGC 59.962 50.000 0.00 0.00 37.19 4.85
6253 7255 4.948004 CAGGTAATTGGTAAGGGGAAGTTC 59.052 45.833 0.00 0.00 0.00 3.01
6338 7340 3.130516 TGGCTGTTCAAGGTACTATCGAG 59.869 47.826 0.00 0.00 38.49 4.04
6373 7375 7.438160 TGTGCTTATAAGATGTAGGAATGTTCG 59.562 37.037 16.85 0.00 0.00 3.95
6468 7470 3.365472 GAGGGGTGATAATTTGGCTGTT 58.635 45.455 0.00 0.00 0.00 3.16
6608 7610 4.006780 TGCAGAATTGAACAGCAGTCTA 57.993 40.909 0.00 0.00 0.00 2.59
6688 7690 7.054124 TGGAAATTATGAATCTCTGGTACACC 58.946 38.462 0.00 0.00 0.00 4.16
6728 7730 6.095377 CCATTAATTTTTCTCTCTTTGCGCT 58.905 36.000 9.73 0.00 0.00 5.92
6826 7828 0.179105 AAGATCTCGCAGCAGCTCTG 60.179 55.000 0.00 8.34 45.62 3.35
7134 8136 4.823989 CAGGAACAGGAGAAGAATTGTTGT 59.176 41.667 0.00 0.00 34.18 3.32
7279 8281 4.641989 AGTTATGAGAACATGGGCATTGAC 59.358 41.667 0.00 0.00 37.87 3.18
7388 8390 2.159627 CAGGAAAATGTAGGTGACACGC 59.840 50.000 0.00 0.00 42.17 5.34
7406 8408 4.115516 CACGCAGTAGCAATCTAATCAGT 58.884 43.478 0.00 0.00 41.61 3.41
7438 8440 4.703645 TCTCTTGAGTAGTCCATTGTCG 57.296 45.455 0.00 0.00 0.00 4.35
7484 8486 7.013559 TCTCATTGGCATTTCACCTTGTATATG 59.986 37.037 0.00 0.00 0.00 1.78
7549 8551 4.704833 AGGCTGCGGCGTGACAAT 62.705 61.111 12.82 0.00 39.81 2.71
7552 8554 3.725459 CTGCGGCGTGACAATGCA 61.725 61.111 9.37 0.00 40.34 3.96
7574 8576 3.007398 AGTTCTGAAGTCCGAGCTTGAAT 59.993 43.478 1.22 0.00 0.00 2.57
7657 8662 4.591072 ACCTTGTAAAGCAATAAAAGGCCA 59.409 37.500 5.01 0.00 42.02 5.36
7774 8783 7.776030 TGGTTCAAAGGTTGTCTACAGAAATAA 59.224 33.333 0.00 0.00 0.00 1.40
8028 9039 7.148272 CCTGTTTCTCTTCCTGAATCAAGATTC 60.148 40.741 14.33 14.33 45.55 2.52
8119 9132 5.677319 TCTTTAACTCTACCCATGGTCAG 57.323 43.478 11.73 7.25 37.09 3.51
8176 9189 0.322648 CATGTGGAGACTGCACCTCA 59.677 55.000 22.59 6.44 37.97 3.86
8347 9556 7.762159 TGCTAAACAGAATATCACGTATTGTCA 59.238 33.333 0.00 0.00 33.16 3.58
8381 9590 3.243434 ACTGCCGATCTTATGAAGTACCG 60.243 47.826 0.00 0.00 0.00 4.02
8382 9591 2.691526 TGCCGATCTTATGAAGTACCGT 59.308 45.455 0.00 0.00 0.00 4.83
8383 9592 3.050619 GCCGATCTTATGAAGTACCGTG 58.949 50.000 0.00 0.00 0.00 4.94
8384 9593 3.243301 GCCGATCTTATGAAGTACCGTGA 60.243 47.826 0.00 0.00 0.00 4.35
8385 9594 4.735578 GCCGATCTTATGAAGTACCGTGAA 60.736 45.833 0.00 0.00 0.00 3.18
8386 9595 5.345702 CCGATCTTATGAAGTACCGTGAAA 58.654 41.667 0.00 0.00 0.00 2.69
8387 9596 5.231568 CCGATCTTATGAAGTACCGTGAAAC 59.768 44.000 0.00 0.00 0.00 2.78
8388 9597 5.803461 CGATCTTATGAAGTACCGTGAAACA 59.197 40.000 0.00 0.00 35.74 2.83
8389 9598 6.237490 CGATCTTATGAAGTACCGTGAAACAC 60.237 42.308 0.00 0.00 35.74 3.32
8390 9599 6.092955 TCTTATGAAGTACCGTGAAACACT 57.907 37.500 0.00 0.00 35.74 3.55
8391 9600 7.218228 TCTTATGAAGTACCGTGAAACACTA 57.782 36.000 0.00 0.00 35.74 2.74
8392 9601 7.086376 TCTTATGAAGTACCGTGAAACACTAC 58.914 38.462 0.00 0.00 35.74 2.73
8393 9602 4.924305 TGAAGTACCGTGAAACACTACT 57.076 40.909 0.00 0.00 35.74 2.57
8394 9603 6.579666 ATGAAGTACCGTGAAACACTACTA 57.420 37.500 0.00 0.00 35.74 1.82
8395 9604 6.005583 TGAAGTACCGTGAAACACTACTAG 57.994 41.667 0.00 0.00 35.74 2.57
8396 9605 5.048504 TGAAGTACCGTGAAACACTACTAGG 60.049 44.000 0.00 0.00 35.74 3.02
8397 9606 4.655963 AGTACCGTGAAACACTACTAGGA 58.344 43.478 0.00 0.00 35.74 2.94
8398 9607 5.072741 AGTACCGTGAAACACTACTAGGAA 58.927 41.667 0.00 0.00 35.74 3.36
8399 9608 4.942761 ACCGTGAAACACTACTAGGAAA 57.057 40.909 0.00 0.00 35.74 3.13
8400 9609 5.280654 ACCGTGAAACACTACTAGGAAAA 57.719 39.130 0.00 0.00 35.74 2.29
8401 9610 5.673514 ACCGTGAAACACTACTAGGAAAAA 58.326 37.500 0.00 0.00 35.74 1.94
8402 9611 5.756833 ACCGTGAAACACTACTAGGAAAAAG 59.243 40.000 0.00 0.00 35.74 2.27
8403 9612 5.178809 CCGTGAAACACTACTAGGAAAAAGG 59.821 44.000 0.00 0.00 35.74 3.11
8404 9613 5.333875 CGTGAAACACTACTAGGAAAAAGGC 60.334 44.000 0.00 0.00 35.74 4.35
8405 9614 5.763698 GTGAAACACTACTAGGAAAAAGGCT 59.236 40.000 0.00 0.00 36.32 4.58
8406 9615 6.932960 GTGAAACACTACTAGGAAAAAGGCTA 59.067 38.462 0.00 0.00 36.32 3.93
8407 9616 7.606839 GTGAAACACTACTAGGAAAAAGGCTAT 59.393 37.037 0.00 0.00 36.32 2.97
8408 9617 8.818860 TGAAACACTACTAGGAAAAAGGCTATA 58.181 33.333 0.00 0.00 0.00 1.31
8409 9618 9.315525 GAAACACTACTAGGAAAAAGGCTATAG 57.684 37.037 0.00 0.00 0.00 1.31
8410 9619 8.605325 AACACTACTAGGAAAAAGGCTATAGA 57.395 34.615 3.21 0.00 0.00 1.98
8411 9620 8.785184 ACACTACTAGGAAAAAGGCTATAGAT 57.215 34.615 3.21 0.00 0.00 1.98
8412 9621 8.643324 ACACTACTAGGAAAAAGGCTATAGATG 58.357 37.037 3.21 0.00 0.00 2.90
8413 9622 8.091449 CACTACTAGGAAAAAGGCTATAGATGG 58.909 40.741 3.21 0.00 0.00 3.51
8414 9623 8.011290 ACTACTAGGAAAAAGGCTATAGATGGA 58.989 37.037 3.21 0.00 0.00 3.41
8415 9624 7.691993 ACTAGGAAAAAGGCTATAGATGGAA 57.308 36.000 3.21 0.00 0.00 3.53
8416 9625 8.281529 ACTAGGAAAAAGGCTATAGATGGAAT 57.718 34.615 3.21 0.00 0.00 3.01
8417 9626 8.728098 ACTAGGAAAAAGGCTATAGATGGAATT 58.272 33.333 3.21 0.00 0.00 2.17
8418 9627 7.830099 AGGAAAAAGGCTATAGATGGAATTG 57.170 36.000 3.21 0.00 0.00 2.32
8419 9628 7.586349 AGGAAAAAGGCTATAGATGGAATTGA 58.414 34.615 3.21 0.00 0.00 2.57
8420 9629 7.503902 AGGAAAAAGGCTATAGATGGAATTGAC 59.496 37.037 3.21 0.00 0.00 3.18
8421 9630 7.285401 GGAAAAAGGCTATAGATGGAATTGACA 59.715 37.037 3.21 0.00 0.00 3.58
8422 9631 7.573968 AAAAGGCTATAGATGGAATTGACAC 57.426 36.000 3.21 0.00 0.00 3.67
8423 9632 6.506538 AAGGCTATAGATGGAATTGACACT 57.493 37.500 3.21 0.00 0.00 3.55
8424 9633 5.862845 AGGCTATAGATGGAATTGACACTG 58.137 41.667 3.21 0.00 0.00 3.66
8425 9634 5.604231 AGGCTATAGATGGAATTGACACTGA 59.396 40.000 3.21 0.00 0.00 3.41
8426 9635 6.271857 AGGCTATAGATGGAATTGACACTGAT 59.728 38.462 3.21 0.00 0.00 2.90
8427 9636 6.370994 GGCTATAGATGGAATTGACACTGATG 59.629 42.308 3.21 0.00 0.00 3.07
8428 9637 6.370994 GCTATAGATGGAATTGACACTGATGG 59.629 42.308 3.21 0.00 0.00 3.51
8429 9638 3.285484 AGATGGAATTGACACTGATGGC 58.715 45.455 0.00 0.00 0.00 4.40
8430 9639 2.583024 TGGAATTGACACTGATGGCA 57.417 45.000 0.00 0.00 44.45 4.92
8431 9640 2.161855 TGGAATTGACACTGATGGCAC 58.838 47.619 0.00 0.00 46.40 5.01
8432 9641 2.161855 GGAATTGACACTGATGGCACA 58.838 47.619 0.00 0.00 46.40 4.57
8433 9642 2.095059 GGAATTGACACTGATGGCACAC 60.095 50.000 0.00 0.00 46.40 3.82
8434 9643 1.538047 ATTGACACTGATGGCACACC 58.462 50.000 0.00 0.00 46.40 4.16
8435 9644 0.182299 TTGACACTGATGGCACACCA 59.818 50.000 0.00 0.00 46.40 4.17
8444 9653 1.228215 TGGCACACCAGACATGTGG 60.228 57.895 1.15 0.97 46.22 4.17
8450 9659 3.434319 CCAGACATGTGGTGCGCC 61.434 66.667 10.11 10.11 32.32 6.53
8451 9660 2.669229 CAGACATGTGGTGCGCCA 60.669 61.111 16.89 16.89 43.73 5.69
8467 9676 8.432110 TGGTGCGCCATTACTATATATTAATG 57.568 34.615 16.89 18.99 40.46 1.90
8474 9683 7.861630 CCATTACTATATATTAATGGCGCACC 58.138 38.462 26.53 0.00 44.81 5.01
8490 9699 3.293714 CCATGTGTTGGTGCGCCA 61.294 61.111 16.89 16.89 44.38 5.69
8491 9700 2.638354 CCATGTGTTGGTGCGCCAT 61.638 57.895 21.95 0.61 45.56 4.40
8492 9701 1.289694 CATGTGTTGGTGCGCCATT 59.710 52.632 21.95 0.00 45.56 3.16
8493 9702 0.525311 CATGTGTTGGTGCGCCATTA 59.475 50.000 21.95 9.48 45.56 1.90
8494 9703 0.810648 ATGTGTTGGTGCGCCATTAG 59.189 50.000 21.95 0.00 45.56 1.73
8495 9704 0.536233 TGTGTTGGTGCGCCATTAGT 60.536 50.000 21.95 0.00 45.56 2.24
8496 9705 1.270893 TGTGTTGGTGCGCCATTAGTA 60.271 47.619 21.95 0.61 45.56 1.82
8497 9706 1.807742 GTGTTGGTGCGCCATTAGTAA 59.192 47.619 21.95 0.00 45.56 2.24
8498 9707 2.422127 GTGTTGGTGCGCCATTAGTAAT 59.578 45.455 21.95 0.00 45.56 1.89
8499 9708 3.085533 TGTTGGTGCGCCATTAGTAATT 58.914 40.909 21.95 0.00 45.56 1.40
8500 9709 3.508012 TGTTGGTGCGCCATTAGTAATTT 59.492 39.130 21.95 0.00 45.56 1.82
8501 9710 4.021894 TGTTGGTGCGCCATTAGTAATTTT 60.022 37.500 21.95 0.00 45.56 1.82
8502 9711 4.792521 TGGTGCGCCATTAGTAATTTTT 57.207 36.364 16.89 0.00 40.46 1.94
8531 9740 8.687824 AAATTTCATCAAAACTACTAATGGCG 57.312 30.769 0.00 0.00 0.00 5.69
8532 9741 4.875544 TCATCAAAACTACTAATGGCGC 57.124 40.909 0.00 0.00 0.00 6.53
8533 9742 4.257731 TCATCAAAACTACTAATGGCGCA 58.742 39.130 10.83 0.00 0.00 6.09
8534 9743 4.881273 TCATCAAAACTACTAATGGCGCAT 59.119 37.500 10.83 0.00 0.00 4.73
8535 9744 4.875544 TCAAAACTACTAATGGCGCATC 57.124 40.909 10.83 0.00 0.00 3.91
8536 9745 3.308595 TCAAAACTACTAATGGCGCATCG 59.691 43.478 10.83 0.00 0.00 3.84
8537 9746 2.596904 AACTACTAATGGCGCATCGT 57.403 45.000 10.83 0.65 0.00 3.73
8538 9747 1.852942 ACTACTAATGGCGCATCGTG 58.147 50.000 10.83 0.00 0.00 4.35
8539 9748 1.139989 CTACTAATGGCGCATCGTGG 58.860 55.000 10.83 0.00 0.00 4.94
8540 9749 0.249699 TACTAATGGCGCATCGTGGG 60.250 55.000 10.83 0.00 0.00 4.61
8541 9750 1.227527 CTAATGGCGCATCGTGGGA 60.228 57.895 10.83 0.00 31.21 4.37
8542 9751 1.224069 CTAATGGCGCATCGTGGGAG 61.224 60.000 10.83 0.00 31.21 4.30
8543 9752 1.966901 TAATGGCGCATCGTGGGAGT 61.967 55.000 10.83 0.00 31.21 3.85
8544 9753 4.758251 TGGCGCATCGTGGGAGTG 62.758 66.667 10.83 0.00 31.21 3.51
8546 9755 4.760047 GCGCATCGTGGGAGTGGT 62.760 66.667 0.30 0.00 31.21 4.16
8547 9756 2.815211 CGCATCGTGGGAGTGGTG 60.815 66.667 0.00 0.00 31.21 4.17
8548 9757 3.127533 GCATCGTGGGAGTGGTGC 61.128 66.667 0.00 0.00 0.00 5.01
8549 9758 2.815211 CATCGTGGGAGTGGTGCG 60.815 66.667 0.00 0.00 0.00 5.34
8550 9759 4.760047 ATCGTGGGAGTGGTGCGC 62.760 66.667 0.00 0.00 0.00 6.09
8565 9774 1.152963 GCGCCATTACCACTCCCAT 60.153 57.895 0.00 0.00 0.00 4.00
8717 13739 1.303317 ACCACTTCCACCGAATGCC 60.303 57.895 0.00 0.00 0.00 4.40
8741 13778 2.429250 CCCGACCACCTTTTCAGTTTTT 59.571 45.455 0.00 0.00 0.00 1.94
8816 13863 6.109156 TGTGATATGTGGTCTAGTTGTTGT 57.891 37.500 0.00 0.00 0.00 3.32
8817 13864 5.931724 TGTGATATGTGGTCTAGTTGTTGTG 59.068 40.000 0.00 0.00 0.00 3.33
8953 14003 7.165460 TCATCTACTCGAAAAGTTACATCCA 57.835 36.000 0.00 0.00 39.55 3.41
8962 14012 9.124807 CTCGAAAAGTTACATCCAAATTTAACC 57.875 33.333 0.00 0.00 31.25 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.196378 ACTAAATGGTACTCAGAGAAAGAAGT 57.804 34.615 3.79 0.00 0.00 3.01
72 73 1.134401 CACCGACCATTACTGCCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
79 80 3.181454 GGATTGGATCACCGACCATTACT 60.181 47.826 0.00 0.00 39.42 2.24
90 91 2.695147 GGGGTTCAATGGATTGGATCAC 59.305 50.000 0.00 0.00 38.30 3.06
156 157 3.444703 CTTGATCGCAAGGTAGCTACT 57.555 47.619 22.74 6.91 46.13 2.57
166 167 3.874873 CGAGTGCCTTGATCGCAA 58.125 55.556 0.00 0.00 38.13 4.85
180 181 0.110599 CGTCTGGAGCTATACGCGAG 60.111 60.000 15.93 0.00 45.59 5.03
252 253 2.406024 GCAAGCGTTTCATGATGTGTTG 59.594 45.455 0.00 0.00 0.00 3.33
280 281 1.606889 GGGACCCTCACTCACGACT 60.607 63.158 2.09 0.00 0.00 4.18
283 284 2.207229 TGTGGGACCCTCACTCACG 61.207 63.158 13.00 0.00 36.21 4.35
287 288 2.147387 GGTGTGTGGGACCCTCACT 61.147 63.158 34.47 0.00 45.07 3.41
312 314 7.093596 GGGACTTCAATGAAATTCTCCATTCTT 60.094 37.037 0.00 0.00 31.22 2.52
322 324 7.972301 TGTTTATTGGGGACTTCAATGAAATT 58.028 30.769 0.00 0.00 36.63 1.82
329 331 7.526359 GCCTTAATTGTTTATTGGGGACTTCAA 60.526 37.037 0.00 0.00 0.00 2.69
367 369 5.641636 TGCAAACGTATGAGAGCTGAAAATA 59.358 36.000 0.00 0.00 0.00 1.40
369 371 3.812609 TGCAAACGTATGAGAGCTGAAAA 59.187 39.130 0.00 0.00 0.00 2.29
389 391 1.670326 CCGAAAAAGTACAAGCGTGC 58.330 50.000 0.00 0.00 0.00 5.34
392 394 1.263217 ACTGCCGAAAAAGTACAAGCG 59.737 47.619 0.00 0.00 0.00 4.68
406 408 6.366332 GGTATGTATAGAGAATTCAACTGCCG 59.634 42.308 8.44 0.00 0.00 5.69
407 409 6.651225 GGGTATGTATAGAGAATTCAACTGCC 59.349 42.308 8.44 0.00 0.00 4.85
408 410 7.171678 GTGGGTATGTATAGAGAATTCAACTGC 59.828 40.741 8.44 3.40 0.00 4.40
409 411 8.204160 TGTGGGTATGTATAGAGAATTCAACTG 58.796 37.037 8.44 0.00 0.00 3.16
410 412 8.319057 TGTGGGTATGTATAGAGAATTCAACT 57.681 34.615 8.44 9.06 0.00 3.16
412 414 9.967451 TTTTGTGGGTATGTATAGAGAATTCAA 57.033 29.630 8.44 0.00 0.00 2.69
413 415 9.391006 GTTTTGTGGGTATGTATAGAGAATTCA 57.609 33.333 8.44 0.00 0.00 2.57
417 422 6.342906 CCGTTTTGTGGGTATGTATAGAGAA 58.657 40.000 0.00 0.00 0.00 2.87
476 481 5.981088 ATGCCATTTTGTGAGAATGTACA 57.019 34.783 0.00 0.00 33.65 2.90
478 483 7.701539 AAGTATGCCATTTTGTGAGAATGTA 57.298 32.000 0.00 0.00 33.65 2.29
485 490 7.890515 TGTTGATAAAGTATGCCATTTTGTGA 58.109 30.769 0.00 0.00 0.00 3.58
493 498 8.407832 CAATGAAGATGTTGATAAAGTATGCCA 58.592 33.333 0.00 0.00 0.00 4.92
516 585 4.999950 GGAGCGTATGGAGAATGAATCAAT 59.000 41.667 0.00 0.00 0.00 2.57
517 586 4.380531 GGAGCGTATGGAGAATGAATCAA 58.619 43.478 0.00 0.00 0.00 2.57
522 591 1.412710 GTGGGAGCGTATGGAGAATGA 59.587 52.381 0.00 0.00 0.00 2.57
535 604 0.170339 GTATGGCGTTTTGTGGGAGC 59.830 55.000 0.00 0.00 0.00 4.70
583 653 1.469703 GGCGTTTTGTGGGTATGTACC 59.530 52.381 0.40 0.40 45.71 3.34
609 679 5.807730 CGGAACACGTAAGATGATGATAC 57.192 43.478 0.00 0.00 43.62 2.24
627 697 3.452990 TCCTGCCTTGTTGATATACGGAA 59.547 43.478 0.00 0.00 0.00 4.30
634 704 3.118261 GGATGAGTCCTGCCTTGTTGATA 60.118 47.826 0.00 0.00 41.60 2.15
640 710 3.565764 TTATGGATGAGTCCTGCCTTG 57.434 47.619 0.00 0.00 45.32 3.61
646 717 2.329267 TCGCCATTATGGATGAGTCCT 58.671 47.619 16.46 0.00 45.32 3.85
652 723 2.810274 CAGACCTTCGCCATTATGGATG 59.190 50.000 16.46 6.50 40.96 3.51
684 755 4.265893 ACACGGGCAATGTATAAACATGA 58.734 39.130 0.00 0.00 45.79 3.07
698 769 1.549243 TAGGCATTCAGACACGGGCA 61.549 55.000 0.00 0.00 0.00 5.36
714 785 6.942532 ATGCAATACTGGTTACATTGTAGG 57.057 37.500 0.00 0.00 33.22 3.18
715 786 7.715249 ACCTATGCAATACTGGTTACATTGTAG 59.285 37.037 0.00 0.00 33.22 2.74
752 823 4.743057 TGTATGTGAGCTACTGCAAGAT 57.257 40.909 0.00 0.00 42.74 2.40
753 824 4.535526 TTGTATGTGAGCTACTGCAAGA 57.464 40.909 0.00 0.00 42.74 3.02
754 825 5.122869 ACATTTGTATGTGAGCTACTGCAAG 59.877 40.000 0.00 0.00 43.29 4.01
756 827 4.578871 ACATTTGTATGTGAGCTACTGCA 58.421 39.130 0.00 0.00 43.29 4.41
757 828 5.580691 TGTACATTTGTATGTGAGCTACTGC 59.419 40.000 0.00 0.00 44.56 4.40
758 829 7.278646 ACATGTACATTTGTATGTGAGCTACTG 59.721 37.037 5.37 0.00 44.56 2.74
759 830 7.331026 ACATGTACATTTGTATGTGAGCTACT 58.669 34.615 5.37 0.00 44.56 2.57
760 831 7.539712 ACATGTACATTTGTATGTGAGCTAC 57.460 36.000 5.37 0.00 44.56 3.58
809 884 5.183713 TGGAAGCATCTCAAATGTCGAAAAT 59.816 36.000 0.00 0.00 0.00 1.82
824 919 0.396139 TTGGGCTCCATGGAAGCATC 60.396 55.000 26.93 20.71 31.53 3.91
857 953 5.402270 CGTTCAAGTGGGAATTGAAAACATC 59.598 40.000 2.92 0.00 45.48 3.06
858 954 5.288804 CGTTCAAGTGGGAATTGAAAACAT 58.711 37.500 2.92 0.00 45.48 2.71
859 955 4.677584 CGTTCAAGTGGGAATTGAAAACA 58.322 39.130 2.92 0.00 45.48 2.83
860 956 3.489416 GCGTTCAAGTGGGAATTGAAAAC 59.511 43.478 2.92 0.00 45.48 2.43
901 1078 0.537371 GTGTTGGGCTGTTGGCTACT 60.537 55.000 0.01 0.00 41.46 2.57
902 1079 0.537371 AGTGTTGGGCTGTTGGCTAC 60.537 55.000 0.00 0.00 41.46 3.58
903 1080 0.537143 CAGTGTTGGGCTGTTGGCTA 60.537 55.000 0.00 0.00 41.46 3.93
904 1081 1.829533 CAGTGTTGGGCTGTTGGCT 60.830 57.895 0.00 0.00 41.46 4.75
905 1082 2.075426 GACAGTGTTGGGCTGTTGGC 62.075 60.000 0.00 0.00 45.99 4.52
906 1083 1.455383 GGACAGTGTTGGGCTGTTGG 61.455 60.000 0.00 0.00 45.99 3.77
907 1084 0.751277 TGGACAGTGTTGGGCTGTTG 60.751 55.000 0.00 0.00 45.99 3.33
908 1085 0.033601 TTGGACAGTGTTGGGCTGTT 60.034 50.000 0.00 0.00 45.99 3.16
910 1087 0.466189 ACTTGGACAGTGTTGGGCTG 60.466 55.000 0.00 0.00 39.67 4.85
911 1088 0.258774 AACTTGGACAGTGTTGGGCT 59.741 50.000 0.00 0.00 35.12 5.19
912 1089 0.668535 GAACTTGGACAGTGTTGGGC 59.331 55.000 0.00 0.00 35.12 5.36
913 1090 1.318576 GGAACTTGGACAGTGTTGGG 58.681 55.000 0.00 0.00 35.12 4.12
914 1091 2.051334 TGGAACTTGGACAGTGTTGG 57.949 50.000 0.00 0.00 35.12 3.77
915 1092 2.223572 GCTTGGAACTTGGACAGTGTTG 60.224 50.000 0.00 0.00 35.12 3.33
916 1093 2.024414 GCTTGGAACTTGGACAGTGTT 58.976 47.619 0.00 0.00 35.12 3.32
917 1094 1.212935 AGCTTGGAACTTGGACAGTGT 59.787 47.619 0.00 0.00 35.12 3.55
918 1095 1.972872 AGCTTGGAACTTGGACAGTG 58.027 50.000 0.00 0.00 35.12 3.66
919 1096 3.327757 TGATAGCTTGGAACTTGGACAGT 59.672 43.478 0.00 0.00 37.30 3.55
920 1097 3.686726 GTGATAGCTTGGAACTTGGACAG 59.313 47.826 0.00 0.00 0.00 3.51
921 1098 3.327757 AGTGATAGCTTGGAACTTGGACA 59.672 43.478 0.00 0.00 0.00 4.02
922 1099 3.686726 CAGTGATAGCTTGGAACTTGGAC 59.313 47.826 0.00 0.00 0.00 4.02
923 1100 3.327757 ACAGTGATAGCTTGGAACTTGGA 59.672 43.478 0.00 0.00 0.00 3.53
924 1101 3.679389 ACAGTGATAGCTTGGAACTTGG 58.321 45.455 0.00 0.00 0.00 3.61
925 1102 3.686726 GGACAGTGATAGCTTGGAACTTG 59.313 47.826 0.00 0.00 0.00 3.16
926 1103 3.327757 TGGACAGTGATAGCTTGGAACTT 59.672 43.478 0.00 0.00 0.00 2.66
927 1104 2.906389 TGGACAGTGATAGCTTGGAACT 59.094 45.455 0.00 0.00 0.00 3.01
928 1105 3.334583 TGGACAGTGATAGCTTGGAAC 57.665 47.619 0.00 0.00 0.00 3.62
929 1106 4.365514 TTTGGACAGTGATAGCTTGGAA 57.634 40.909 0.00 0.00 0.00 3.53
930 1107 4.574674 ATTTGGACAGTGATAGCTTGGA 57.425 40.909 0.00 0.00 0.00 3.53
931 1108 6.757897 TTAATTTGGACAGTGATAGCTTGG 57.242 37.500 0.00 0.00 0.00 3.61
954 1131 1.908299 CCTTGCCGGGCCTCTTTTT 60.908 57.895 17.97 0.00 0.00 1.94
955 1132 2.283173 CCTTGCCGGGCCTCTTTT 60.283 61.111 17.97 0.00 0.00 2.27
963 1140 4.785453 GTCTCCTGCCTTGCCGGG 62.785 72.222 2.18 0.00 33.71 5.73
964 1141 3.259633 AAGTCTCCTGCCTTGCCGG 62.260 63.158 0.00 0.00 34.20 6.13
965 1142 2.037136 CAAGTCTCCTGCCTTGCCG 61.037 63.158 0.00 0.00 32.46 5.69
966 1143 1.676967 CCAAGTCTCCTGCCTTGCC 60.677 63.158 0.00 0.00 37.36 4.52
967 1144 2.338785 GCCAAGTCTCCTGCCTTGC 61.339 63.158 0.00 0.00 37.36 4.01
968 1145 0.959372 CAGCCAAGTCTCCTGCCTTG 60.959 60.000 0.00 0.00 38.21 3.61
969 1146 1.377994 CAGCCAAGTCTCCTGCCTT 59.622 57.895 0.00 0.00 0.00 4.35
970 1147 2.600729 CCAGCCAAGTCTCCTGCCT 61.601 63.158 0.00 0.00 0.00 4.75
971 1148 2.045536 CCAGCCAAGTCTCCTGCC 60.046 66.667 0.00 0.00 0.00 4.85
1000 1177 3.113824 TGGGATTTGGATTGGATTTGGG 58.886 45.455 0.00 0.00 0.00 4.12
1036 1213 2.952116 AGAATAGAAGGAGGGTCGGAG 58.048 52.381 0.00 0.00 0.00 4.63
1038 1215 3.301274 AGAAGAATAGAAGGAGGGTCGG 58.699 50.000 0.00 0.00 0.00 4.79
1056 1233 1.620819 GAGTCAGTCAGAGGCCAAGAA 59.379 52.381 5.01 0.00 0.00 2.52
1061 1238 1.896694 CCAGAGTCAGTCAGAGGCC 59.103 63.158 0.00 0.00 0.00 5.19
1066 1243 0.902048 TCCCAGCCAGAGTCAGTCAG 60.902 60.000 0.00 0.00 0.00 3.51
1067 1244 0.252421 ATCCCAGCCAGAGTCAGTCA 60.252 55.000 0.00 0.00 0.00 3.41
1068 1245 0.463620 GATCCCAGCCAGAGTCAGTC 59.536 60.000 0.00 0.00 0.00 3.51
1069 1246 0.042431 AGATCCCAGCCAGAGTCAGT 59.958 55.000 0.00 0.00 0.00 3.41
1109 1286 4.115199 GTAGGGCAGGGCAGGGTG 62.115 72.222 0.00 0.00 0.00 4.61
1110 1287 4.354943 AGTAGGGCAGGGCAGGGT 62.355 66.667 0.00 0.00 0.00 4.34
1111 1288 3.801997 CAGTAGGGCAGGGCAGGG 61.802 72.222 0.00 0.00 0.00 4.45
1112 1289 4.496336 GCAGTAGGGCAGGGCAGG 62.496 72.222 0.00 0.00 0.00 4.85
1115 1292 3.402681 TGAGCAGTAGGGCAGGGC 61.403 66.667 0.00 0.00 35.83 5.19
1173 1350 1.682323 GTGGAGTAGTAGTAGGCAGGC 59.318 57.143 0.00 0.00 0.00 4.85
1175 1352 3.633065 GGAAGTGGAGTAGTAGTAGGCAG 59.367 52.174 0.00 0.00 0.00 4.85
1176 1353 3.626729 GGGAAGTGGAGTAGTAGTAGGCA 60.627 52.174 0.00 0.00 0.00 4.75
1177 1354 2.957680 GGGAAGTGGAGTAGTAGTAGGC 59.042 54.545 0.00 0.00 0.00 3.93
1178 1355 3.564264 GGGGAAGTGGAGTAGTAGTAGG 58.436 54.545 0.00 0.00 0.00 3.18
1183 1361 0.040058 TGCGGGGAAGTGGAGTAGTA 59.960 55.000 0.00 0.00 0.00 1.82
1185 1363 0.323629 TTTGCGGGGAAGTGGAGTAG 59.676 55.000 0.00 0.00 0.00 2.57
1186 1364 0.323629 CTTTGCGGGGAAGTGGAGTA 59.676 55.000 0.00 0.00 0.00 2.59
1306 1516 2.902846 CGCCGGAGAGGTCGATCT 60.903 66.667 5.05 0.00 43.70 2.75
1635 1852 2.750350 CAACCGAGGAGGCCTTGT 59.250 61.111 6.77 0.00 46.52 3.16
1673 1898 2.603135 AATCAATTCGGCGCTGCAGC 62.603 55.000 29.12 29.12 37.78 5.25
1690 1915 7.398332 AGCCAAATGAGGTAAAGAAGAATCAAT 59.602 33.333 0.00 0.00 0.00 2.57
1704 1929 0.613012 GCCAGGAAGCCAAATGAGGT 60.613 55.000 0.00 0.00 0.00 3.85
1705 1930 0.612732 TGCCAGGAAGCCAAATGAGG 60.613 55.000 0.00 0.00 0.00 3.86
1706 1931 0.529378 GTGCCAGGAAGCCAAATGAG 59.471 55.000 0.00 0.00 0.00 2.90
1707 1932 1.243342 CGTGCCAGGAAGCCAAATGA 61.243 55.000 0.00 0.00 0.00 2.57
1773 1999 6.881602 CCATCCTATCCTACTTATTTTCCAGC 59.118 42.308 0.00 0.00 0.00 4.85
1800 2026 3.058016 GCAAGTAACAGCTGCTGATCAAA 60.058 43.478 34.28 12.39 35.18 2.69
1898 2128 5.221541 ACAGCTAAATTCTAGATTCCCCTCG 60.222 44.000 0.00 0.00 0.00 4.63
1928 2158 3.316283 CAATTGCAAATGCCGTAACTGT 58.684 40.909 1.71 0.00 41.18 3.55
1948 2179 1.237533 TTGCATCGCAGAAAAGAGCA 58.762 45.000 0.00 0.00 43.58 4.26
1955 2186 1.308047 ACTGTGTTTGCATCGCAGAA 58.692 45.000 27.65 1.54 43.58 3.02
1975 2206 7.915293 TGACAGAGTGAAAACAGAGTAAAAA 57.085 32.000 0.00 0.00 0.00 1.94
2086 2317 5.630121 TGAGAATGTTACACTTCAACCCAT 58.370 37.500 9.09 0.00 0.00 4.00
2106 2337 1.021390 GTCGTTGTCCCTGGCATGAG 61.021 60.000 0.00 0.00 0.00 2.90
2289 2583 5.353400 GGTAAAGCAGGTCATACAAGTTACC 59.647 44.000 0.00 0.00 33.36 2.85
2304 2598 4.223032 TGGGTAAGAGAAGAGGTAAAGCAG 59.777 45.833 0.00 0.00 0.00 4.24
2426 2720 8.668510 ATGTTGACAGGAGCACTAATAAATAG 57.331 34.615 0.00 0.00 37.66 1.73
3169 3841 9.030301 ACAAAACACAAACAGACAATATTAAGC 57.970 29.630 0.00 0.00 0.00 3.09
3565 4267 8.884124 ATGGAAAACCAGATCTAAATGAGAAA 57.116 30.769 0.00 0.00 37.85 2.52
3978 4680 8.555361 GCAGGAATTCATCATAACTAAGAGAAC 58.445 37.037 7.93 0.00 0.00 3.01
4086 4788 3.319198 GGCAAGGAGGGTGACGGA 61.319 66.667 0.00 0.00 0.00 4.69
4135 4837 5.477637 GGCCTACCAAAACTACCACAAAATA 59.522 40.000 0.00 0.00 35.26 1.40
4136 4838 4.282449 GGCCTACCAAAACTACCACAAAAT 59.718 41.667 0.00 0.00 35.26 1.82
4253 5156 7.673180 AGCATAAGTATTTATACCGCCAAGTA 58.327 34.615 0.00 0.00 33.79 2.24
4260 5163 9.701098 TCAAGGTAAGCATAAGTATTTATACCG 57.299 33.333 0.00 0.00 32.79 4.02
4325 5234 5.023452 TCTAAAGACAATGCTCCCAGTAGA 58.977 41.667 0.00 0.00 0.00 2.59
4423 5334 2.662866 AGGACCAATGCTCATTCATGG 58.337 47.619 0.00 0.00 0.00 3.66
4733 5644 4.694037 TCTTCAGATCAACAAGCATGTCTG 59.306 41.667 0.00 0.00 39.40 3.51
4793 5704 4.755266 TGAGTAAACCCTATGCCTCTTC 57.245 45.455 0.00 0.00 0.00 2.87
4865 5777 6.763610 AGGCCGTTTAAACAAAATCAAAATGA 59.236 30.769 18.07 0.00 0.00 2.57
4984 5896 7.039363 ACACAGCTCTTCAGTCTTTTCTATACT 60.039 37.037 0.00 0.00 0.00 2.12
4985 5897 7.062839 CACACAGCTCTTCAGTCTTTTCTATAC 59.937 40.741 0.00 0.00 0.00 1.47
5006 5918 2.722094 AGCAGACTGAAAAACCACACA 58.278 42.857 6.65 0.00 0.00 3.72
5041 5953 3.557898 CCCATACATGCCTAAGCTACCAG 60.558 52.174 0.00 0.00 40.80 4.00
5057 5969 0.890683 GCAGCATAATGCCCCCATAC 59.109 55.000 0.00 0.00 46.52 2.39
5134 6048 1.282738 TCCCCCTCCGGTTTCATTTAC 59.717 52.381 0.00 0.00 0.00 2.01
5246 6161 3.525537 AGAAATCTGCAGGACACATACG 58.474 45.455 15.13 0.00 0.00 3.06
5489 6406 7.264947 TCAATGAGAAACCAAAAAGGAGTTTC 58.735 34.615 6.72 6.72 46.20 2.78
5490 6407 7.181569 TCAATGAGAAACCAAAAAGGAGTTT 57.818 32.000 0.00 0.00 41.22 2.66
5493 6410 7.212274 ACATTCAATGAGAAACCAAAAAGGAG 58.788 34.615 3.79 0.00 40.22 3.69
5494 6411 7.123355 ACATTCAATGAGAAACCAAAAAGGA 57.877 32.000 3.79 0.00 40.22 3.36
5495 6412 7.790823 AACATTCAATGAGAAACCAAAAAGG 57.209 32.000 3.79 0.00 40.22 3.11
5813 6730 0.392336 GCAATTTGTTCCCACTGGCA 59.608 50.000 0.00 0.00 0.00 4.92
5814 6731 0.392336 TGCAATTTGTTCCCACTGGC 59.608 50.000 0.00 0.00 0.00 4.85
5820 6737 4.574013 TGAAAATGTGTGCAATTTGTTCCC 59.426 37.500 0.00 0.00 28.74 3.97
5835 6752 9.736023 CTTTACTTCTGCTTTACTTGAAAATGT 57.264 29.630 0.00 0.00 0.00 2.71
5850 6851 5.105310 TGGTAGATCAGTCCTTTACTTCTGC 60.105 44.000 0.00 0.00 35.76 4.26
5937 6939 5.050769 GCATCGTACCTATTCACATGACTTG 60.051 44.000 0.00 0.00 0.00 3.16
5943 6945 4.937201 TCTGCATCGTACCTATTCACAT 57.063 40.909 0.00 0.00 0.00 3.21
6092 7094 8.993121 AGATAAGGAAATATGTTGCTATCGTTG 58.007 33.333 0.00 0.00 0.00 4.10
6196 7198 6.486253 TTTTTGCTGATAGAAGTGCTAGTG 57.514 37.500 0.00 0.00 31.33 2.74
6253 7255 2.661594 TGTGATCCGATAATTCGCTCG 58.338 47.619 0.00 0.00 44.12 5.03
6338 7340 7.308782 ACATCTTATAAGCACACAAGCTAAC 57.691 36.000 7.67 0.00 45.89 2.34
6468 7470 7.094248 CCATAAATGTCTCCAACAGTCAAATCA 60.094 37.037 0.00 0.00 42.37 2.57
6608 7610 4.460263 TCAAATCTGTACAACAGCTGGTT 58.540 39.130 19.93 7.19 45.54 3.67
6682 7684 2.743938 CATACTGATCGCCTGGTGTAC 58.256 52.381 7.20 3.60 0.00 2.90
6688 7690 0.035881 ATGGGCATACTGATCGCCTG 59.964 55.000 8.26 0.00 45.50 4.85
6728 7730 3.114606 TGGATGCTGGAAGACCAATCTA 58.885 45.455 0.00 0.00 46.32 1.98
6826 7828 5.673337 TGTTGTATGTGAAAGAGTTGAGC 57.327 39.130 0.00 0.00 0.00 4.26
7134 8136 8.394971 CAATTATCAATTGCCTGGTCATAGTA 57.605 34.615 0.00 0.00 41.48 1.82
7164 8166 1.412343 TGGGAGCAAAACAAAAGGAGC 59.588 47.619 0.00 0.00 0.00 4.70
7279 8281 0.099968 CTTCATGTGATGCCAAGCCG 59.900 55.000 0.00 0.00 0.00 5.52
7336 8338 2.134789 ATGGTGAAGATGGGAACTGC 57.865 50.000 0.00 0.00 0.00 4.40
7388 8390 9.197694 GTTGGTATACTGATTAGATTGCTACTG 57.802 37.037 2.25 0.00 0.00 2.74
7406 8408 7.618117 TGGACTACTCAAGAGAATGTTGGTATA 59.382 37.037 3.73 0.00 40.22 1.47
7438 8440 3.576550 AGAAGGAGAAAGTGTCTGAGGTC 59.423 47.826 0.00 0.00 36.41 3.85
7549 8551 0.319900 GCTCGGACTTCAGAACTGCA 60.320 55.000 0.00 0.00 0.00 4.41
7552 8554 1.964223 TCAAGCTCGGACTTCAGAACT 59.036 47.619 0.00 0.00 0.00 3.01
7574 8576 3.073798 TCTGCATTCTCCCTTTGTAACCA 59.926 43.478 0.00 0.00 0.00 3.67
7774 8783 5.496902 TGGGGTAACTACCTATGGGAAATTT 59.503 40.000 0.25 0.00 45.72 1.82
7779 8789 3.799590 TTGGGGTAACTACCTATGGGA 57.200 47.619 0.25 0.00 45.72 4.37
8038 9049 9.394767 AGCATTTCACCAAAACTTTATCTTTTT 57.605 25.926 0.00 0.00 0.00 1.94
8093 9106 6.940298 TGACCATGGGTAGAGTTAAAGAAAAG 59.060 38.462 18.09 0.00 35.25 2.27
8119 9132 2.231716 AAAAATGCCCTGGGTCCTAC 57.768 50.000 15.56 0.00 0.00 3.18
8146 9159 0.036952 CTCCACATGGTGTCTCGCTT 60.037 55.000 0.00 0.00 36.34 4.68
8147 9160 0.900182 TCTCCACATGGTGTCTCGCT 60.900 55.000 0.00 0.00 36.34 4.93
8148 9161 0.737715 GTCTCCACATGGTGTCTCGC 60.738 60.000 0.00 0.00 36.34 5.03
8176 9189 3.388350 GGAAGGATATCTCTCCCACGTTT 59.612 47.826 2.05 0.00 35.79 3.60
8226 9239 5.784578 AATATTTCCTTCATTTACCCGCC 57.215 39.130 0.00 0.00 0.00 6.13
8347 9556 4.521146 AGATCGGCAGTGAATCAATCTTT 58.479 39.130 0.00 0.00 0.00 2.52
8381 9590 5.763698 AGCCTTTTTCCTAGTAGTGTTTCAC 59.236 40.000 0.00 0.00 34.10 3.18
8382 9591 5.937111 AGCCTTTTTCCTAGTAGTGTTTCA 58.063 37.500 0.00 0.00 0.00 2.69
8383 9592 9.315525 CTATAGCCTTTTTCCTAGTAGTGTTTC 57.684 37.037 0.00 0.00 0.00 2.78
8384 9593 9.043548 TCTATAGCCTTTTTCCTAGTAGTGTTT 57.956 33.333 0.00 0.00 0.00 2.83
8385 9594 8.605325 TCTATAGCCTTTTTCCTAGTAGTGTT 57.395 34.615 0.00 0.00 0.00 3.32
8386 9595 8.643324 CATCTATAGCCTTTTTCCTAGTAGTGT 58.357 37.037 0.00 0.00 0.00 3.55
8387 9596 8.091449 CCATCTATAGCCTTTTTCCTAGTAGTG 58.909 40.741 0.00 0.00 0.00 2.74
8388 9597 8.011290 TCCATCTATAGCCTTTTTCCTAGTAGT 58.989 37.037 0.00 0.00 0.00 2.73
8389 9598 8.423906 TCCATCTATAGCCTTTTTCCTAGTAG 57.576 38.462 0.00 0.00 0.00 2.57
8390 9599 8.792830 TTCCATCTATAGCCTTTTTCCTAGTA 57.207 34.615 0.00 0.00 0.00 1.82
8391 9600 7.691993 TTCCATCTATAGCCTTTTTCCTAGT 57.308 36.000 0.00 0.00 0.00 2.57
8392 9601 9.007901 CAATTCCATCTATAGCCTTTTTCCTAG 57.992 37.037 0.00 0.00 0.00 3.02
8393 9602 8.723365 TCAATTCCATCTATAGCCTTTTTCCTA 58.277 33.333 0.00 0.00 0.00 2.94
8394 9603 7.503902 GTCAATTCCATCTATAGCCTTTTTCCT 59.496 37.037 0.00 0.00 0.00 3.36
8395 9604 7.285401 TGTCAATTCCATCTATAGCCTTTTTCC 59.715 37.037 0.00 0.00 0.00 3.13
8396 9605 8.131731 GTGTCAATTCCATCTATAGCCTTTTTC 58.868 37.037 0.00 0.00 0.00 2.29
8397 9606 7.836183 AGTGTCAATTCCATCTATAGCCTTTTT 59.164 33.333 0.00 0.00 0.00 1.94
8398 9607 7.284034 CAGTGTCAATTCCATCTATAGCCTTTT 59.716 37.037 0.00 0.00 0.00 2.27
8399 9608 6.769822 CAGTGTCAATTCCATCTATAGCCTTT 59.230 38.462 0.00 0.00 0.00 3.11
8400 9609 6.100279 TCAGTGTCAATTCCATCTATAGCCTT 59.900 38.462 0.00 0.00 0.00 4.35
8401 9610 5.604231 TCAGTGTCAATTCCATCTATAGCCT 59.396 40.000 0.00 0.00 0.00 4.58
8402 9611 5.858381 TCAGTGTCAATTCCATCTATAGCC 58.142 41.667 0.00 0.00 0.00 3.93
8403 9612 6.370994 CCATCAGTGTCAATTCCATCTATAGC 59.629 42.308 0.00 0.00 0.00 2.97
8404 9613 6.370994 GCCATCAGTGTCAATTCCATCTATAG 59.629 42.308 0.00 0.00 0.00 1.31
8405 9614 6.183361 TGCCATCAGTGTCAATTCCATCTATA 60.183 38.462 0.00 0.00 0.00 1.31
8406 9615 5.068636 GCCATCAGTGTCAATTCCATCTAT 58.931 41.667 0.00 0.00 0.00 1.98
8407 9616 4.080413 TGCCATCAGTGTCAATTCCATCTA 60.080 41.667 0.00 0.00 0.00 1.98
8408 9617 3.285484 GCCATCAGTGTCAATTCCATCT 58.715 45.455 0.00 0.00 0.00 2.90
8409 9618 3.018856 TGCCATCAGTGTCAATTCCATC 58.981 45.455 0.00 0.00 0.00 3.51
8410 9619 2.756760 GTGCCATCAGTGTCAATTCCAT 59.243 45.455 0.00 0.00 0.00 3.41
8411 9620 2.161855 GTGCCATCAGTGTCAATTCCA 58.838 47.619 0.00 0.00 0.00 3.53
8412 9621 2.095059 GTGTGCCATCAGTGTCAATTCC 60.095 50.000 0.00 0.00 0.00 3.01
8413 9622 2.095059 GGTGTGCCATCAGTGTCAATTC 60.095 50.000 0.00 0.00 34.09 2.17
8414 9623 1.888512 GGTGTGCCATCAGTGTCAATT 59.111 47.619 0.00 0.00 34.09 2.32
8415 9624 1.202915 TGGTGTGCCATCAGTGTCAAT 60.203 47.619 0.00 0.00 40.46 2.57
8416 9625 0.182299 TGGTGTGCCATCAGTGTCAA 59.818 50.000 0.00 0.00 40.46 3.18
8417 9626 0.250424 CTGGTGTGCCATCAGTGTCA 60.250 55.000 7.16 0.00 45.05 3.58
8418 9627 0.035317 TCTGGTGTGCCATCAGTGTC 59.965 55.000 13.14 0.00 42.61 3.67
8419 9628 0.250467 GTCTGGTGTGCCATCAGTGT 60.250 55.000 13.14 0.00 42.61 3.55
8420 9629 0.250424 TGTCTGGTGTGCCATCAGTG 60.250 55.000 13.14 0.00 42.61 3.66
8421 9630 0.694771 ATGTCTGGTGTGCCATCAGT 59.305 50.000 13.14 0.00 42.61 3.41
8422 9631 1.092348 CATGTCTGGTGTGCCATCAG 58.908 55.000 8.65 8.65 45.05 2.90
8423 9632 0.401356 ACATGTCTGGTGTGCCATCA 59.599 50.000 0.00 0.00 45.05 3.07
8424 9633 0.806868 CACATGTCTGGTGTGCCATC 59.193 55.000 0.00 0.00 45.05 3.51
8425 9634 0.609957 CCACATGTCTGGTGTGCCAT 60.610 55.000 0.00 0.00 45.05 4.40
8426 9635 1.228215 CCACATGTCTGGTGTGCCA 60.228 57.895 0.00 0.00 44.26 4.92
8427 9636 1.228245 ACCACATGTCTGGTGTGCC 60.228 57.895 7.18 0.00 43.38 5.01
8428 9637 4.481195 ACCACATGTCTGGTGTGC 57.519 55.556 7.18 0.00 43.38 4.57
8432 9641 2.669569 GCGCACCACATGTCTGGT 60.670 61.111 0.30 2.18 46.18 4.00
8433 9642 3.434319 GGCGCACCACATGTCTGG 61.434 66.667 10.83 0.00 37.33 3.86
8434 9643 2.669229 TGGCGCACCACATGTCTG 60.669 61.111 10.83 0.00 42.67 3.51
8450 9659 8.432110 TGGTGCGCCATTAATATATAGTAATG 57.568 34.615 25.63 25.63 41.38 1.90
8505 9714 9.781834 CGCCATTAGTAGTTTTGATGAAATTTA 57.218 29.630 0.00 0.00 0.00 1.40
8506 9715 7.275560 GCGCCATTAGTAGTTTTGATGAAATTT 59.724 33.333 0.00 0.00 0.00 1.82
8507 9716 6.751888 GCGCCATTAGTAGTTTTGATGAAATT 59.248 34.615 0.00 0.00 0.00 1.82
8508 9717 6.127758 TGCGCCATTAGTAGTTTTGATGAAAT 60.128 34.615 4.18 0.00 0.00 2.17
8509 9718 5.182190 TGCGCCATTAGTAGTTTTGATGAAA 59.818 36.000 4.18 0.00 0.00 2.69
8510 9719 4.697828 TGCGCCATTAGTAGTTTTGATGAA 59.302 37.500 4.18 0.00 0.00 2.57
8511 9720 4.257731 TGCGCCATTAGTAGTTTTGATGA 58.742 39.130 4.18 0.00 0.00 2.92
8512 9721 4.614555 TGCGCCATTAGTAGTTTTGATG 57.385 40.909 4.18 0.00 0.00 3.07
8513 9722 4.024893 CGATGCGCCATTAGTAGTTTTGAT 60.025 41.667 4.18 0.00 0.00 2.57
8514 9723 3.308595 CGATGCGCCATTAGTAGTTTTGA 59.691 43.478 4.18 0.00 0.00 2.69
8515 9724 3.063452 ACGATGCGCCATTAGTAGTTTTG 59.937 43.478 4.18 0.00 0.00 2.44
8516 9725 3.063452 CACGATGCGCCATTAGTAGTTTT 59.937 43.478 4.18 0.00 0.00 2.43
8517 9726 2.607635 CACGATGCGCCATTAGTAGTTT 59.392 45.455 4.18 0.00 0.00 2.66
8518 9727 2.201732 CACGATGCGCCATTAGTAGTT 58.798 47.619 4.18 0.00 0.00 2.24
8519 9728 1.538204 CCACGATGCGCCATTAGTAGT 60.538 52.381 4.18 0.00 0.00 2.73
8520 9729 1.139989 CCACGATGCGCCATTAGTAG 58.860 55.000 4.18 0.00 0.00 2.57
8521 9730 0.249699 CCCACGATGCGCCATTAGTA 60.250 55.000 4.18 0.00 0.00 1.82
8522 9731 1.523711 CCCACGATGCGCCATTAGT 60.524 57.895 4.18 0.89 0.00 2.24
8523 9732 1.224069 CTCCCACGATGCGCCATTAG 61.224 60.000 4.18 0.27 0.00 1.73
8524 9733 1.227527 CTCCCACGATGCGCCATTA 60.228 57.895 4.18 0.00 0.00 1.90
8525 9734 2.514592 CTCCCACGATGCGCCATT 60.515 61.111 4.18 0.00 0.00 3.16
8526 9735 3.785859 ACTCCCACGATGCGCCAT 61.786 61.111 4.18 0.00 0.00 4.40
8527 9736 4.758251 CACTCCCACGATGCGCCA 62.758 66.667 4.18 0.00 0.00 5.69
8529 9738 4.760047 ACCACTCCCACGATGCGC 62.760 66.667 0.00 0.00 0.00 6.09
8530 9739 2.815211 CACCACTCCCACGATGCG 60.815 66.667 0.00 0.00 0.00 4.73
8531 9740 3.127533 GCACCACTCCCACGATGC 61.128 66.667 0.00 0.00 0.00 3.91
8532 9741 2.815211 CGCACCACTCCCACGATG 60.815 66.667 0.00 0.00 0.00 3.84
8533 9742 4.760047 GCGCACCACTCCCACGAT 62.760 66.667 0.30 0.00 0.00 3.73
8544 9753 2.112815 GGAGTGGTAATGGCGCACC 61.113 63.158 10.83 8.98 35.24 5.01
8545 9754 2.112815 GGGAGTGGTAATGGCGCAC 61.113 63.158 10.83 0.00 0.00 5.34
8546 9755 1.920734 ATGGGAGTGGTAATGGCGCA 61.921 55.000 10.83 0.00 0.00 6.09
8547 9756 1.152963 ATGGGAGTGGTAATGGCGC 60.153 57.895 0.00 0.00 0.00 6.53
8548 9757 0.819259 CCATGGGAGTGGTAATGGCG 60.819 60.000 2.85 0.00 33.64 5.69
8549 9758 3.116091 CCATGGGAGTGGTAATGGC 57.884 57.895 2.85 0.00 33.64 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.