Multiple sequence alignment - TraesCS7A01G166900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G166900 chr7A 100.000 4841 0 0 1 4841 122192477 122197317 0.000000e+00 8940.0
1 TraesCS7A01G166900 chr7A 75.840 476 87 22 298 757 701423200 701422737 2.930000e-52 217.0
2 TraesCS7A01G166900 chr7A 84.000 100 10 4 281 377 694499274 694499370 1.860000e-14 91.6
3 TraesCS7A01G166900 chr7B 92.041 1646 64 25 1017 2639 78576097 78577698 0.000000e+00 2252.0
4 TraesCS7A01G166900 chr7B 92.083 1301 63 18 2662 3939 78577950 78579233 0.000000e+00 1796.0
5 TraesCS7A01G166900 chr7B 79.152 873 111 38 3997 4839 78579401 78580232 5.510000e-149 538.0
6 TraesCS7A01G166900 chr7B 77.095 179 27 6 217 382 727535532 727535355 1.860000e-14 91.6
7 TraesCS7A01G166900 chr7D 85.442 1154 92 33 107 1214 117772779 117773902 0.000000e+00 1131.0
8 TraesCS7A01G166900 chr7D 78.829 888 105 49 3997 4841 117777425 117778272 5.550000e-144 521.0
9 TraesCS7A01G166900 chr7D 88.421 380 30 10 1359 1737 117773913 117774279 3.440000e-121 446.0
10 TraesCS7A01G166900 chr7D 84.232 482 39 16 3476 3939 117776745 117777207 7.440000e-118 435.0
11 TraesCS7A01G166900 chr7D 81.465 437 72 9 2133 2568 117775170 117775598 2.770000e-92 350.0
12 TraesCS7A01G166900 chr7D 85.542 83 10 2 298 378 139869117 139869035 8.630000e-13 86.1
13 TraesCS7A01G166900 chr2D 80.696 316 47 11 455 757 343163185 343163499 2.910000e-57 233.0
14 TraesCS7A01G166900 chr2D 92.727 55 3 1 309 363 575942899 575942952 1.440000e-10 78.7
15 TraesCS7A01G166900 chr2B 79.360 344 54 13 439 768 653658627 653658287 4.880000e-55 226.0
16 TraesCS7A01G166900 chr2B 85.938 64 8 1 293 355 449954431 449954368 3.130000e-07 67.6
17 TraesCS7A01G166900 chr2A 75.813 492 88 27 298 768 14936828 14937309 2.270000e-53 220.0
18 TraesCS7A01G166900 chr2A 75.738 305 63 7 462 757 727722769 727722467 5.050000e-30 143.0
19 TraesCS7A01G166900 chr2A 78.641 103 17 4 194 295 632599230 632599132 4.040000e-06 63.9
20 TraesCS7A01G166900 chr1B 79.545 264 46 6 501 757 548651297 548651035 1.070000e-41 182.0
21 TraesCS7A01G166900 chr1B 81.356 177 29 4 592 764 129108250 129108426 1.820000e-29 141.0
22 TraesCS7A01G166900 chr1B 82.432 74 10 3 510 583 367429873 367429803 1.450000e-05 62.1
23 TraesCS7A01G166900 chr1B 87.500 56 4 2 507 561 687275364 687275311 1.450000e-05 62.1
24 TraesCS7A01G166900 chr3D 78.169 284 52 8 494 768 35357703 35357421 6.440000e-39 172.0
25 TraesCS7A01G166900 chr3D 80.800 125 18 5 231 355 102650206 102650324 5.160000e-15 93.5
26 TraesCS7A01G166900 chr3D 89.583 48 4 1 316 363 1519956 1520002 5.230000e-05 60.2
27 TraesCS7A01G166900 chr5A 83.158 190 26 5 584 768 570462681 570462869 8.330000e-38 169.0
28 TraesCS7A01G166900 chr5D 84.211 95 15 0 194 288 40203131 40203225 5.160000e-15 93.5
29 TraesCS7A01G166900 chr5D 89.655 58 6 0 231 288 28663339 28663396 1.870000e-09 75.0
30 TraesCS7A01G166900 chr6D 83.117 77 10 3 288 363 78776195 78776269 3.130000e-07 67.6
31 TraesCS7A01G166900 chr3A 84.058 69 10 1 218 286 277538412 277538479 1.120000e-06 65.8
32 TraesCS7A01G166900 chr3A 96.970 33 1 0 529 561 449104427 449104395 6.770000e-04 56.5
33 TraesCS7A01G166900 chr4B 81.707 82 10 4 207 287 23814428 23814351 4.040000e-06 63.9
34 TraesCS7A01G166900 chr5B 92.500 40 3 0 316 355 66285787 66285826 1.880000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G166900 chr7A 122192477 122197317 4840 False 8940.000000 8940 100.000000 1 4841 1 chr7A.!!$F1 4840
1 TraesCS7A01G166900 chr7B 78576097 78580232 4135 False 1528.666667 2252 87.758667 1017 4839 3 chr7B.!!$F1 3822
2 TraesCS7A01G166900 chr7D 117772779 117778272 5493 False 576.600000 1131 83.677800 107 4841 5 chr7D.!!$F1 4734

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.099613 TTGCTTTTTGTTGCGCGAGA 59.900 45.000 12.10 0.0 0.00 4.04 F
1246 1291 0.037605 GGTTCGTTCTGACCGGATGT 60.038 55.000 9.46 0.0 0.00 3.06 F
2067 2651 0.180171 TTAGCTGTGTGCCTGTGTGT 59.820 50.000 0.00 0.0 44.23 3.72 F
2069 2653 0.250038 AGCTGTGTGCCTGTGTGTAG 60.250 55.000 0.00 0.0 44.23 2.74 F
3430 4645 1.004044 CCTGAAGACTCACCAGCCATT 59.996 52.381 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2048 2632 0.180171 ACACACAGGCACACAGCTAA 59.820 50.0 0.00 0.00 44.79 3.09 R
2742 3555 0.038709 GTGCGCCCTTAACAAATGCA 60.039 50.0 4.18 0.00 0.00 3.96 R
3115 4233 0.326264 AGTGCAGATGACCCACTTCC 59.674 55.0 0.00 0.00 36.48 3.46 R
3507 4870 0.732571 CAAACGTTGGGAGCGCATAT 59.267 50.0 11.47 0.00 0.00 1.78 R
4672 6243 0.028505 CGGCATGTACGCGTACTACT 59.971 55.0 39.69 25.76 37.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.403936 GGGCAAGAGTGTGTCACTT 57.596 52.632 4.27 0.00 45.44 3.16
19 20 0.947244 GGGCAAGAGTGTGTCACTTG 59.053 55.000 4.27 0.00 45.44 3.16
20 21 0.947244 GGCAAGAGTGTGTCACTTGG 59.053 55.000 4.27 0.00 45.44 3.61
21 22 0.308993 GCAAGAGTGTGTCACTTGGC 59.691 55.000 4.27 5.12 45.44 4.52
22 23 1.667236 CAAGAGTGTGTCACTTGGCA 58.333 50.000 4.27 0.00 45.44 4.92
30 31 3.408288 GTGTCACTTGGCACGTTTTAA 57.592 42.857 0.00 0.00 41.08 1.52
31 32 3.359654 GTGTCACTTGGCACGTTTTAAG 58.640 45.455 0.00 0.00 41.08 1.85
32 33 2.223386 TGTCACTTGGCACGTTTTAAGC 60.223 45.455 0.00 0.00 0.00 3.09
36 37 2.951458 GGCACGTTTTAAGCCGCT 59.049 55.556 0.00 0.00 38.86 5.52
37 38 1.442017 GGCACGTTTTAAGCCGCTG 60.442 57.895 0.00 0.00 38.86 5.18
38 39 2.080636 GCACGTTTTAAGCCGCTGC 61.081 57.895 0.00 0.00 37.95 5.25
39 40 1.442017 CACGTTTTAAGCCGCTGCC 60.442 57.895 0.00 0.00 38.69 4.85
40 41 2.202298 CGTTTTAAGCCGCTGCCG 60.202 61.111 0.00 0.00 38.69 5.69
41 42 2.504026 GTTTTAAGCCGCTGCCGC 60.504 61.111 4.77 4.77 38.69 6.53
42 43 2.980791 TTTTAAGCCGCTGCCGCA 60.981 55.556 14.98 0.00 38.69 5.69
43 44 2.339556 TTTTAAGCCGCTGCCGCAT 61.340 52.632 14.98 5.88 38.69 4.73
44 45 2.540736 TTTTAAGCCGCTGCCGCATG 62.541 55.000 14.98 0.00 38.69 4.06
45 46 4.776322 TAAGCCGCTGCCGCATGT 62.776 61.111 14.98 2.98 38.69 3.21
67 68 2.695314 GCTCTGGGCGTTTCTATGG 58.305 57.895 0.00 0.00 0.00 2.74
68 69 0.178068 GCTCTGGGCGTTTCTATGGA 59.822 55.000 0.00 0.00 0.00 3.41
69 70 1.202698 GCTCTGGGCGTTTCTATGGAT 60.203 52.381 0.00 0.00 0.00 3.41
70 71 2.746472 GCTCTGGGCGTTTCTATGGATT 60.746 50.000 0.00 0.00 0.00 3.01
71 72 3.545703 CTCTGGGCGTTTCTATGGATTT 58.454 45.455 0.00 0.00 0.00 2.17
72 73 3.947834 CTCTGGGCGTTTCTATGGATTTT 59.052 43.478 0.00 0.00 0.00 1.82
73 74 4.340617 TCTGGGCGTTTCTATGGATTTTT 58.659 39.130 0.00 0.00 0.00 1.94
91 92 4.599047 TTTTTCCAGATGTTTTCGGCAT 57.401 36.364 0.00 0.00 0.00 4.40
92 93 4.599047 TTTTCCAGATGTTTTCGGCATT 57.401 36.364 0.00 0.00 0.00 3.56
93 94 4.599047 TTTCCAGATGTTTTCGGCATTT 57.401 36.364 0.00 0.00 0.00 2.32
94 95 4.599047 TTCCAGATGTTTTCGGCATTTT 57.401 36.364 0.00 0.00 0.00 1.82
95 96 5.713792 TTCCAGATGTTTTCGGCATTTTA 57.286 34.783 0.00 0.00 0.00 1.52
96 97 5.309323 TCCAGATGTTTTCGGCATTTTAG 57.691 39.130 0.00 0.00 0.00 1.85
97 98 5.007034 TCCAGATGTTTTCGGCATTTTAGA 58.993 37.500 0.00 0.00 0.00 2.10
98 99 5.095490 CCAGATGTTTTCGGCATTTTAGAC 58.905 41.667 0.00 0.00 0.00 2.59
99 100 4.788100 CAGATGTTTTCGGCATTTTAGACG 59.212 41.667 0.00 0.00 42.70 4.18
100 101 3.546002 TGTTTTCGGCATTTTAGACGG 57.454 42.857 0.00 0.00 41.34 4.79
101 102 2.226912 TGTTTTCGGCATTTTAGACGGG 59.773 45.455 0.00 0.00 41.34 5.28
102 103 2.188062 TTTCGGCATTTTAGACGGGT 57.812 45.000 0.00 0.00 41.34 5.28
103 104 2.188062 TTCGGCATTTTAGACGGGTT 57.812 45.000 0.00 0.00 41.34 4.11
104 105 2.188062 TCGGCATTTTAGACGGGTTT 57.812 45.000 0.00 0.00 41.34 3.27
105 106 2.506444 TCGGCATTTTAGACGGGTTTT 58.494 42.857 0.00 0.00 41.34 2.43
106 107 2.485038 TCGGCATTTTAGACGGGTTTTC 59.515 45.455 0.00 0.00 41.34 2.29
107 108 2.486592 CGGCATTTTAGACGGGTTTTCT 59.513 45.455 0.00 0.00 36.07 2.52
108 109 3.057806 CGGCATTTTAGACGGGTTTTCTT 60.058 43.478 0.00 0.00 36.07 2.52
109 110 4.557895 CGGCATTTTAGACGGGTTTTCTTT 60.558 41.667 0.00 0.00 36.07 2.52
150 151 4.152580 GGTCTTTCTTAGCTTTTGGACGAG 59.847 45.833 0.00 0.00 0.00 4.18
159 160 5.324784 AGCTTTTGGACGAGAAAAGTTTT 57.675 34.783 0.00 0.00 40.87 2.43
160 161 6.445357 AGCTTTTGGACGAGAAAAGTTTTA 57.555 33.333 0.00 0.00 40.87 1.52
161 162 6.859017 AGCTTTTGGACGAGAAAAGTTTTAA 58.141 32.000 0.00 0.00 40.87 1.52
204 205 1.441777 CGTTTTGCTTTTTGTTGCGC 58.558 45.000 0.00 0.00 0.00 6.09
208 209 0.099613 TTGCTTTTTGTTGCGCGAGA 59.900 45.000 12.10 0.00 0.00 4.04
213 214 2.387125 TTTTGTTGCGCGAGAGGCAC 62.387 55.000 12.10 0.00 43.84 5.01
224 225 1.201965 CGAGAGGCACGATTTTGCTTC 60.202 52.381 0.28 0.28 46.31 3.86
228 229 0.313672 GGCACGATTTTGCTTCCACA 59.686 50.000 0.00 0.00 42.56 4.17
249 250 2.614057 AGGAGACACTGTTTTGCTTTCG 59.386 45.455 0.00 0.00 0.00 3.46
261 262 1.811266 GCTTTCGCGAGAGGCATGA 60.811 57.895 25.84 0.00 43.84 3.07
268 269 2.581354 GAGAGGCATGACCGTGCT 59.419 61.111 13.17 0.00 46.52 4.40
303 304 3.744238 AAAACACATTTTCCCTTCCGG 57.256 42.857 0.00 0.00 32.29 5.14
304 305 2.668144 AACACATTTTCCCTTCCGGA 57.332 45.000 0.00 0.00 39.68 5.14
326 332 4.773323 AGAGGCATAGTTTTGCTTTCAC 57.227 40.909 0.00 0.00 42.38 3.18
337 343 2.383527 GCTTTCACGAGAGGCACGG 61.384 63.158 0.00 0.00 34.93 4.94
338 344 2.357034 TTTCACGAGAGGCACGGC 60.357 61.111 0.00 0.00 34.93 5.68
355 361 2.041115 GCCTTGCCTCTCGGAAACC 61.041 63.158 0.00 0.00 0.00 3.27
395 423 0.539438 TTCCCTTTTGCGACATGGCT 60.539 50.000 0.00 0.00 0.00 4.75
452 481 1.740332 TTCCACGAGAAGCACGACCA 61.740 55.000 0.00 0.00 34.70 4.02
462 491 2.338620 CACGACCACGCCTCTTGA 59.661 61.111 0.00 0.00 43.96 3.02
472 501 3.181480 CCACGCCTCTTGAAAAGGAAAAA 60.181 43.478 0.00 0.00 46.24 1.94
507 536 5.505181 TTTCTTCTTTCCACTAGAGGCAT 57.495 39.130 0.53 0.00 0.00 4.40
509 538 4.096681 TCTTCTTTCCACTAGAGGCATGA 58.903 43.478 0.53 0.00 0.00 3.07
524 553 3.763360 AGGCATGATTTTGATTCCGTGAA 59.237 39.130 0.00 0.00 0.00 3.18
545 574 1.857837 AGGCACGATTTTGTTTTTGCG 59.142 42.857 0.00 0.00 0.00 4.85
546 575 1.855360 GGCACGATTTTGTTTTTGCGA 59.145 42.857 0.00 0.00 0.00 5.10
547 576 2.097444 GGCACGATTTTGTTTTTGCGAG 60.097 45.455 0.00 0.00 0.00 5.03
548 577 2.786578 GCACGATTTTGTTTTTGCGAGA 59.213 40.909 0.00 0.00 0.00 4.04
549 578 3.121696 GCACGATTTTGTTTTTGCGAGAG 60.122 43.478 0.00 0.00 0.00 3.20
550 579 3.421888 CACGATTTTGTTTTTGCGAGAGG 59.578 43.478 0.00 0.00 0.00 3.69
551 580 2.405025 CGATTTTGTTTTTGCGAGAGGC 59.595 45.455 0.00 0.00 43.96 4.70
560 589 2.887568 GCGAGAGGCATGGTCGTG 60.888 66.667 0.00 0.00 42.87 4.35
561 590 2.573869 CGAGAGGCATGGTCGTGT 59.426 61.111 0.00 0.00 0.00 4.49
562 591 1.517257 CGAGAGGCATGGTCGTGTC 60.517 63.158 0.00 0.00 0.00 3.67
563 592 1.893786 GAGAGGCATGGTCGTGTCT 59.106 57.895 0.00 0.00 36.61 3.41
564 593 4.504132 GAGGCATGGTCGTGTCTC 57.496 61.111 8.75 8.75 42.86 3.36
565 594 1.893786 GAGGCATGGTCGTGTCTCT 59.106 57.895 15.26 1.42 45.17 3.10
566 595 0.247736 GAGGCATGGTCGTGTCTCTT 59.752 55.000 15.26 0.00 45.17 2.85
570 599 1.668919 GCATGGTCGTGTCTCTTTCGA 60.669 52.381 0.00 0.00 0.00 3.71
577 606 2.363038 TCGTGTCTCTTTCGAAAAGGGA 59.637 45.455 12.41 8.70 0.00 4.20
652 684 8.890718 GTTTGTCTAAACCTATTAACAGGGATC 58.109 37.037 4.48 0.00 40.19 3.36
663 695 9.331282 CCTATTAACAGGGATCTAGTTTTGAAG 57.669 37.037 0.00 0.00 31.47 3.02
673 705 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
674 706 2.338500 AGTTTTGAAGATCTCGACGCC 58.662 47.619 0.00 0.00 0.00 5.68
677 709 1.173913 TTGAAGATCTCGACGCCAGA 58.826 50.000 0.00 0.00 0.00 3.86
686 718 1.328680 CTCGACGCCAGAAATCCAATG 59.671 52.381 0.00 0.00 0.00 2.82
689 721 2.286595 CGACGCCAGAAATCCAATGATG 60.287 50.000 0.00 0.00 0.00 3.07
700 732 3.147553 TCCAATGATGAAAACGGTCCA 57.852 42.857 0.00 0.00 0.00 4.02
702 734 3.891977 TCCAATGATGAAAACGGTCCAAA 59.108 39.130 0.00 0.00 0.00 3.28
704 736 5.053145 CCAATGATGAAAACGGTCCAAAAA 58.947 37.500 0.00 0.00 0.00 1.94
710 742 6.256757 TGATGAAAACGGTCCAAAAATTGAAC 59.743 34.615 0.00 0.00 0.00 3.18
715 747 1.784283 GGTCCAAAAATTGAACGCACG 59.216 47.619 0.00 0.00 0.00 5.34
728 760 4.751060 TGAACGCACGGTTTAAGAGATAT 58.249 39.130 0.00 0.00 39.50 1.63
732 764 4.736793 ACGCACGGTTTAAGAGATATAACG 59.263 41.667 0.00 0.00 32.69 3.18
735 767 6.237648 CGCACGGTTTAAGAGATATAACGTTT 60.238 38.462 5.91 0.00 36.86 3.60
774 806 4.099419 TGAAAAGGGGAAAGCTCACTTTTC 59.901 41.667 24.30 24.30 46.20 2.29
798 830 1.375908 GCCACTTGTCGCATCCTGA 60.376 57.895 0.00 0.00 0.00 3.86
801 833 1.081892 CACTTGTCGCATCCTGAAGG 58.918 55.000 0.00 0.00 0.00 3.46
813 845 2.182827 TCCTGAAGGGTGAGAGTGATG 58.817 52.381 0.00 0.00 36.25 3.07
817 849 3.743521 TGAAGGGTGAGAGTGATGTTTG 58.256 45.455 0.00 0.00 0.00 2.93
819 851 2.338809 AGGGTGAGAGTGATGTTTGGA 58.661 47.619 0.00 0.00 0.00 3.53
829 861 5.308237 AGAGTGATGTTTGGAAGGAGTACTT 59.692 40.000 0.00 0.00 43.65 2.24
843 885 3.939592 GGAGTACTTCTTTGATTTCGGGG 59.060 47.826 0.00 0.00 0.00 5.73
880 922 2.346803 CGATATCTATTTGGGCCGTGG 58.653 52.381 0.00 0.00 0.00 4.94
892 934 4.814294 CCGTGGTCGTGCCTAGCC 62.814 72.222 1.06 0.00 38.35 3.93
981 1026 1.526455 CGGAACCCAAAACCGTCCA 60.526 57.895 0.00 0.00 41.47 4.02
982 1027 1.788067 CGGAACCCAAAACCGTCCAC 61.788 60.000 0.00 0.00 41.47 4.02
987 1032 0.816421 CCCAAAACCGTCCACGTCTT 60.816 55.000 0.00 0.00 37.74 3.01
988 1033 0.584876 CCAAAACCGTCCACGTCTTC 59.415 55.000 0.00 0.00 37.74 2.87
989 1034 1.578583 CAAAACCGTCCACGTCTTCT 58.421 50.000 0.00 0.00 37.74 2.85
994 1039 2.979649 GTCCACGTCTTCTCCCCC 59.020 66.667 0.00 0.00 0.00 5.40
1219 1264 1.482177 CCGATTCCTCCTCCTCCATCT 60.482 57.143 0.00 0.00 0.00 2.90
1239 1284 3.110178 CCCGCGGTTCGTTCTGAC 61.110 66.667 26.12 0.00 36.19 3.51
1246 1291 0.037605 GGTTCGTTCTGACCGGATGT 60.038 55.000 9.46 0.00 0.00 3.06
1249 1294 1.790755 TCGTTCTGACCGGATGTTTG 58.209 50.000 9.46 0.00 0.00 2.93
1258 1303 1.001815 ACCGGATGTTTGTGCTTTTCG 60.002 47.619 9.46 0.00 0.00 3.46
1269 1314 2.561373 CTTTTCGCTTGGACGGCC 59.439 61.111 0.00 0.00 0.00 6.13
1415 1462 2.418334 GGGGAGATTCGTCGCTAACTTT 60.418 50.000 0.00 0.00 0.00 2.66
1423 1470 1.397190 CGTCGCTAACTTTGTGTGCTG 60.397 52.381 0.00 0.00 0.00 4.41
1523 1570 3.487879 GGTTCGTTGTGTTTGATTTCGGT 60.488 43.478 0.00 0.00 0.00 4.69
1542 1589 4.000988 CGGTCCATTGCTTAGTTGTTAGT 58.999 43.478 0.00 0.00 0.00 2.24
1568 1615 4.518211 GGTATGCTCTGGATGAGAAATTGG 59.482 45.833 0.00 0.00 45.39 3.16
1585 1632 7.770201 AGAAATTGGAATGTTTTGGTTTTTGG 58.230 30.769 0.00 0.00 0.00 3.28
1616 1663 1.197721 CCGTTTGTCCAGAAGCATGTC 59.802 52.381 0.00 0.00 0.00 3.06
1664 1711 5.897250 ACTTGTTGGGGTAAGTCTTGATTTT 59.103 36.000 0.00 0.00 31.88 1.82
1672 1719 6.661805 GGGGTAAGTCTTGATTTTGGTTCATA 59.338 38.462 0.00 0.00 0.00 2.15
1675 1722 8.190784 GGTAAGTCTTGATTTTGGTTCATATGG 58.809 37.037 2.13 0.00 0.00 2.74
1680 1727 5.327616 TGATTTTGGTTCATATGGTGCTG 57.672 39.130 2.13 0.00 0.00 4.41
1693 1740 2.917933 TGGTGCTGGTATGCAAGTATC 58.082 47.619 0.00 0.00 45.12 2.24
1694 1743 1.867233 GGTGCTGGTATGCAAGTATCG 59.133 52.381 0.00 0.00 45.12 2.92
1709 1758 3.119291 AGTATCGCTTTGATTCAGCTCG 58.881 45.455 0.00 0.00 38.57 5.03
1748 1797 7.921786 TGGATTTACAGTTTTGTCAGGATAG 57.078 36.000 0.00 0.00 38.76 2.08
1777 1967 6.690194 AAGATTGGTGCATCTTCTTACATC 57.310 37.500 12.31 0.00 32.09 3.06
1781 1971 6.544928 TTGGTGCATCTTCTTACATCTCTA 57.455 37.500 0.00 0.00 0.00 2.43
1785 1975 6.018343 GGTGCATCTTCTTACATCTCTAAAGC 60.018 42.308 0.00 0.00 0.00 3.51
1789 1979 7.254387 GCATCTTCTTACATCTCTAAAGCTGTG 60.254 40.741 0.00 0.00 33.96 3.66
1795 1985 5.113502 ACATCTCTAAAGCTGTGTTTTGC 57.886 39.130 0.00 0.00 30.84 3.68
1796 1986 4.580167 ACATCTCTAAAGCTGTGTTTTGCA 59.420 37.500 0.00 0.00 30.84 4.08
1797 1987 5.067674 ACATCTCTAAAGCTGTGTTTTGCAA 59.932 36.000 0.00 0.00 30.84 4.08
1866 2056 9.039870 CATTAGTTAATCAGGAGAATGAGTGAC 57.960 37.037 0.00 0.00 34.95 3.67
1871 2061 4.527509 TCAGGAGAATGAGTGACAGTTC 57.472 45.455 0.00 0.00 0.00 3.01
1920 2126 8.899771 TGATCACATCAAACTCTATACGAGTAA 58.100 33.333 0.00 0.00 42.91 2.24
2013 2597 7.333672 AGGAACACTAAAGGAAACTAATTAGCG 59.666 37.037 12.54 0.00 42.68 4.26
2020 2604 6.496338 AAGGAAACTAATTAGCGAAACCTG 57.504 37.500 12.54 0.00 42.68 4.00
2027 2611 6.228258 ACTAATTAGCGAAACCTGTCTTTCA 58.772 36.000 12.54 0.00 31.46 2.69
2048 2632 9.199982 CTTTCAAGCATGATACAATTTTGAACT 57.800 29.630 0.00 0.00 34.10 3.01
2059 2643 5.043248 ACAATTTTGAACTTAGCTGTGTGC 58.957 37.500 0.00 0.00 43.29 4.57
2060 2644 3.708563 TTTTGAACTTAGCTGTGTGCC 57.291 42.857 0.00 0.00 44.23 5.01
2061 2645 2.638480 TTGAACTTAGCTGTGTGCCT 57.362 45.000 0.00 0.00 44.23 4.75
2062 2646 1.882912 TGAACTTAGCTGTGTGCCTG 58.117 50.000 0.00 0.00 44.23 4.85
2063 2647 1.140852 TGAACTTAGCTGTGTGCCTGT 59.859 47.619 0.00 0.00 44.23 4.00
2064 2648 1.532868 GAACTTAGCTGTGTGCCTGTG 59.467 52.381 0.00 0.00 44.23 3.66
2065 2649 0.469917 ACTTAGCTGTGTGCCTGTGT 59.530 50.000 0.00 0.00 44.23 3.72
2066 2650 0.870393 CTTAGCTGTGTGCCTGTGTG 59.130 55.000 0.00 0.00 44.23 3.82
2067 2651 0.180171 TTAGCTGTGTGCCTGTGTGT 59.820 50.000 0.00 0.00 44.23 3.72
2068 2652 1.044611 TAGCTGTGTGCCTGTGTGTA 58.955 50.000 0.00 0.00 44.23 2.90
2069 2653 0.250038 AGCTGTGTGCCTGTGTGTAG 60.250 55.000 0.00 0.00 44.23 2.74
2195 2779 1.069022 CAAGGCACCTGTTCGAATGTG 60.069 52.381 16.49 16.49 0.00 3.21
2218 2802 4.702131 GTGACTGGCTGGACAGATTTTTAT 59.298 41.667 10.72 0.00 40.97 1.40
2221 2805 4.463891 ACTGGCTGGACAGATTTTTATTGG 59.536 41.667 10.72 0.00 40.97 3.16
2362 2946 5.047377 ACATGTGTTATTTACTTGCCTTGGG 60.047 40.000 0.00 0.00 0.00 4.12
2658 3242 7.781324 CCCCCTGTATAGAAATTTGCATATT 57.219 36.000 0.00 0.00 0.00 1.28
2659 3243 8.877864 CCCCCTGTATAGAAATTTGCATATTA 57.122 34.615 2.65 0.00 0.00 0.98
2660 3244 9.479549 CCCCCTGTATAGAAATTTGCATATTAT 57.520 33.333 2.65 0.00 0.00 1.28
2707 3520 9.368921 GTTCTTTTTCTTCTTGTTTTGTTTGTG 57.631 29.630 0.00 0.00 0.00 3.33
2742 3555 3.384168 TGTGAACCTCTATGGCCTGTAT 58.616 45.455 3.32 0.00 40.22 2.29
2757 3570 3.737972 GCCTGTATGCATTTGTTAAGGGC 60.738 47.826 3.54 4.58 0.00 5.19
2966 4084 7.323420 GGGTATGCTTCATTTTAGCTTTCTTT 58.677 34.615 0.00 0.00 39.38 2.52
3056 4174 7.201565 GCAAAGTTACAGAAGACATGTATCCTC 60.202 40.741 0.00 0.00 33.36 3.71
3151 4269 3.879295 TGCACTTTGGCAGATTATAGAGC 59.121 43.478 0.00 0.00 39.25 4.09
3152 4270 4.133078 GCACTTTGGCAGATTATAGAGCT 58.867 43.478 0.00 0.00 0.00 4.09
3153 4271 4.213059 GCACTTTGGCAGATTATAGAGCTC 59.787 45.833 5.27 5.27 0.00 4.09
3154 4272 5.609423 CACTTTGGCAGATTATAGAGCTCT 58.391 41.667 22.17 22.17 0.00 4.09
3155 4273 6.054295 CACTTTGGCAGATTATAGAGCTCTT 58.946 40.000 23.84 12.25 0.00 2.85
3156 4274 6.018098 CACTTTGGCAGATTATAGAGCTCTTG 60.018 42.308 23.84 13.97 0.00 3.02
3157 4275 4.613925 TGGCAGATTATAGAGCTCTTGG 57.386 45.455 23.84 5.18 0.00 3.61
3158 4276 3.244353 TGGCAGATTATAGAGCTCTTGGC 60.244 47.826 23.84 23.59 42.19 4.52
3175 4298 5.819991 TCTTGGCTTATTCCAAATCTCTGT 58.180 37.500 0.00 0.00 44.73 3.41
3180 4303 7.175104 TGGCTTATTCCAAATCTCTGTAGTTT 58.825 34.615 0.00 0.00 32.18 2.66
3183 4306 8.608317 GCTTATTCCAAATCTCTGTAGTTTCTC 58.392 37.037 0.00 0.00 0.00 2.87
3184 4307 9.883142 CTTATTCCAAATCTCTGTAGTTTCTCT 57.117 33.333 0.00 0.00 0.00 3.10
3265 4391 7.155328 TCCGATGCTCCTCTTAAAGATATTTC 58.845 38.462 0.00 0.00 0.00 2.17
3295 4421 3.449737 AGCCTCAATTGATTGTTGGATGG 59.550 43.478 8.96 4.46 38.84 3.51
3358 4484 5.110814 TGTTGCCAACATTAGCTAGGTAT 57.889 39.130 6.08 0.00 36.25 2.73
3359 4485 6.241882 TGTTGCCAACATTAGCTAGGTATA 57.758 37.500 6.08 0.00 36.25 1.47
3430 4645 1.004044 CCTGAAGACTCACCAGCCATT 59.996 52.381 0.00 0.00 0.00 3.16
3464 4679 3.762779 CAGTCCGAGGAATTGCATTTTC 58.237 45.455 0.00 0.00 0.00 2.29
3472 4835 5.644644 GAGGAATTGCATTTTCGAGACATT 58.355 37.500 0.00 0.00 0.00 2.71
3499 4862 5.448360 GCCTGATCATCTGCTACTTTGTTTC 60.448 44.000 0.00 0.00 0.00 2.78
3507 4870 2.687425 TGCTACTTTGTTTCTTGCAGCA 59.313 40.909 0.00 0.00 35.55 4.41
3510 4873 5.183713 TGCTACTTTGTTTCTTGCAGCATAT 59.816 36.000 0.00 0.00 33.15 1.78
3640 5003 2.701780 GGCGCTCCTGACGAGAAGA 61.702 63.158 7.64 0.00 41.63 2.87
3684 5050 3.115554 GTCAGTTTGTTTGGTGCACATC 58.884 45.455 20.43 2.20 0.00 3.06
3699 5076 5.105716 GGTGCACATCGTATATATGGACTCT 60.106 44.000 20.43 0.00 32.76 3.24
3713 5090 1.473080 GGACTCTCTGCTTCTCCATGC 60.473 57.143 0.00 0.00 0.00 4.06
3736 5113 3.000674 CGCAGTAGTCTGATAGTTTTGCG 60.001 47.826 0.59 0.59 43.76 4.85
3753 5130 0.889186 GCGGAGTTCCAGGCTCAAAA 60.889 55.000 0.00 0.00 34.83 2.44
3832 5209 4.814234 ACTCATGTCACGTTTAAGAGCAAA 59.186 37.500 0.00 0.00 0.00 3.68
3833 5210 5.470098 ACTCATGTCACGTTTAAGAGCAAAT 59.530 36.000 0.00 0.00 0.00 2.32
3866 5245 1.774110 TGGCTCCTTTTGCTGTTTGA 58.226 45.000 0.00 0.00 0.00 2.69
3903 5284 9.229784 CTGAAATTATTTGTCATGAATTCGGAG 57.770 33.333 0.00 0.00 0.00 4.63
3909 5290 7.864108 ATTTGTCATGAATTCGGAGTATGAA 57.136 32.000 0.00 0.00 30.43 2.57
3919 5300 8.213546 GAATTCGGAGTATGAATTCGTACTAC 57.786 38.462 31.12 30.20 46.69 2.73
3930 5311 7.835634 TGAATTCGTACTACAATGCATGTAA 57.164 32.000 0.00 0.00 43.75 2.41
3931 5312 8.432110 TGAATTCGTACTACAATGCATGTAAT 57.568 30.769 0.00 0.00 43.75 1.89
3932 5313 8.547894 TGAATTCGTACTACAATGCATGTAATC 58.452 33.333 0.00 0.00 43.75 1.75
3934 5315 8.662781 ATTCGTACTACAATGCATGTAATCTT 57.337 30.769 0.00 0.00 43.75 2.40
3935 5316 7.463469 TCGTACTACAATGCATGTAATCTTG 57.537 36.000 0.00 0.00 43.75 3.02
3936 5317 7.039270 TCGTACTACAATGCATGTAATCTTGT 58.961 34.615 0.00 1.98 43.75 3.16
3940 5332 5.710513 ACAATGCATGTAATCTTGTGTGT 57.289 34.783 0.00 0.00 41.63 3.72
3962 5354 1.343069 AAGGACCGAGCAAGAACTCT 58.657 50.000 0.00 0.00 34.35 3.24
3975 5367 1.808945 AGAACTCTGCCAAATTCAGCG 59.191 47.619 0.00 0.00 0.00 5.18
3976 5368 1.537202 GAACTCTGCCAAATTCAGCGT 59.463 47.619 0.00 0.00 31.57 5.07
3978 5370 1.956477 ACTCTGCCAAATTCAGCGTTT 59.044 42.857 0.00 0.00 0.00 3.60
3979 5371 2.287788 ACTCTGCCAAATTCAGCGTTTG 60.288 45.455 0.00 0.00 36.55 2.93
3980 5372 1.952990 TCTGCCAAATTCAGCGTTTGA 59.047 42.857 7.99 0.00 38.51 2.69
3982 5374 3.755905 TCTGCCAAATTCAGCGTTTGATA 59.244 39.130 7.99 0.00 38.51 2.15
3983 5375 4.217334 TCTGCCAAATTCAGCGTTTGATAA 59.783 37.500 7.99 0.00 38.51 1.75
3984 5376 4.876125 TGCCAAATTCAGCGTTTGATAAA 58.124 34.783 7.99 0.00 38.51 1.40
3985 5377 4.683781 TGCCAAATTCAGCGTTTGATAAAC 59.316 37.500 7.99 0.00 38.51 2.01
3986 5378 4.683781 GCCAAATTCAGCGTTTGATAAACA 59.316 37.500 5.42 0.00 41.44 2.83
3987 5379 5.164061 GCCAAATTCAGCGTTTGATAAACAG 60.164 40.000 5.42 0.26 41.44 3.16
3990 5382 6.560253 AATTCAGCGTTTGATAAACAGTCT 57.440 33.333 5.42 0.00 41.44 3.24
3991 5383 4.990543 TCAGCGTTTGATAAACAGTCTG 57.009 40.909 0.00 0.00 41.44 3.51
3992 5384 3.186409 TCAGCGTTTGATAAACAGTCTGC 59.814 43.478 0.00 0.57 41.44 4.26
3995 5387 4.275936 AGCGTTTGATAAACAGTCTGCTTT 59.724 37.500 0.00 3.08 41.44 3.51
4002 5542 6.966021 TGATAAACAGTCTGCTTTACCAAAC 58.034 36.000 0.00 0.00 0.00 2.93
4017 5557 7.327032 GCTTTACCAAACTTCAATCAAGTGATC 59.673 37.037 0.00 0.00 45.32 2.92
4038 5578 6.259387 TGATCTTTATCACTGTGCTTATGCTG 59.741 38.462 2.12 0.00 37.20 4.41
4040 5580 5.582269 TCTTTATCACTGTGCTTATGCTGAC 59.418 40.000 2.12 0.00 40.48 3.51
4048 5588 5.105187 ACTGTGCTTATGCTGACAGAAGATA 60.105 40.000 20.97 0.00 45.97 1.98
4049 5589 5.111989 TGTGCTTATGCTGACAGAAGATAC 58.888 41.667 6.65 5.26 45.97 2.24
4050 5590 4.509600 GTGCTTATGCTGACAGAAGATACC 59.490 45.833 6.65 0.00 45.97 2.73
4051 5591 4.406972 TGCTTATGCTGACAGAAGATACCT 59.593 41.667 6.65 0.00 45.97 3.08
4052 5592 4.749099 GCTTATGCTGACAGAAGATACCTG 59.251 45.833 6.65 0.00 45.97 4.00
4053 5593 5.452496 GCTTATGCTGACAGAAGATACCTGA 60.452 44.000 6.65 0.00 45.97 3.86
4054 5594 4.669206 ATGCTGACAGAAGATACCTGAG 57.331 45.455 6.65 0.00 35.69 3.35
4055 5595 2.167281 TGCTGACAGAAGATACCTGAGC 59.833 50.000 6.65 0.00 34.20 4.26
4056 5596 2.430332 GCTGACAGAAGATACCTGAGCT 59.570 50.000 6.65 0.00 35.69 4.09
4058 5598 4.098654 GCTGACAGAAGATACCTGAGCTTA 59.901 45.833 6.65 0.00 32.64 3.09
4059 5599 5.221422 GCTGACAGAAGATACCTGAGCTTAT 60.221 44.000 6.65 0.00 32.64 1.73
4060 5600 6.685116 GCTGACAGAAGATACCTGAGCTTATT 60.685 42.308 6.65 0.00 32.64 1.40
4061 5601 6.577103 TGACAGAAGATACCTGAGCTTATTG 58.423 40.000 0.00 0.00 32.64 1.90
4062 5602 6.155221 TGACAGAAGATACCTGAGCTTATTGT 59.845 38.462 0.00 0.00 35.38 2.71
4065 5605 7.550906 ACAGAAGATACCTGAGCTTATTGTTTC 59.449 37.037 0.00 0.00 32.64 2.78
4078 5620 6.865205 AGCTTATTGTTTCAACTTCTGAATGC 59.135 34.615 0.00 0.00 43.64 3.56
4093 5635 6.748333 TCTGAATGCCAGATAAAGAACTTG 57.252 37.500 0.00 0.00 46.38 3.16
4130 5673 9.903682 CATGAAAAATCAGTCAAGTTCATAACT 57.096 29.630 0.00 0.00 45.46 2.24
4131 5674 9.903682 ATGAAAAATCAGTCAAGTTCATAACTG 57.096 29.630 0.00 0.00 41.91 3.16
4174 5739 9.305925 GCTTGAAATGAATAGATTAACCAAAGG 57.694 33.333 0.00 0.00 0.00 3.11
4179 5744 6.995511 TGAATAGATTAACCAAAGGAACGG 57.004 37.500 0.00 0.00 0.00 4.44
4186 5751 1.541379 ACCAAAGGAACGGCCATAAC 58.459 50.000 2.24 0.00 40.02 1.89
4193 5758 1.822371 GGAACGGCCATAACCAAATGT 59.178 47.619 2.24 0.00 36.34 2.71
4196 5761 2.802719 ACGGCCATAACCAAATGTCTT 58.197 42.857 2.24 0.00 0.00 3.01
4222 5787 6.678878 GTTTAGGACCAGAACTGAATTTTCC 58.321 40.000 3.19 1.96 0.00 3.13
4223 5788 4.731313 AGGACCAGAACTGAATTTTCCT 57.269 40.909 3.19 3.94 0.00 3.36
4224 5789 4.657013 AGGACCAGAACTGAATTTTCCTC 58.343 43.478 3.19 0.00 0.00 3.71
4225 5790 3.437049 GGACCAGAACTGAATTTTCCTCG 59.563 47.826 3.19 0.00 0.00 4.63
4226 5791 3.412386 ACCAGAACTGAATTTTCCTCGG 58.588 45.455 3.19 0.00 0.00 4.63
4227 5792 3.181443 ACCAGAACTGAATTTTCCTCGGT 60.181 43.478 3.19 0.00 33.73 4.69
4228 5793 3.821033 CCAGAACTGAATTTTCCTCGGTT 59.179 43.478 3.19 0.00 43.52 4.44
4229 5794 4.278419 CCAGAACTGAATTTTCCTCGGTTT 59.722 41.667 3.19 0.00 41.44 3.27
4230 5795 5.472137 CCAGAACTGAATTTTCCTCGGTTTA 59.528 40.000 3.19 0.00 41.44 2.01
4231 5796 6.348540 CCAGAACTGAATTTTCCTCGGTTTAG 60.349 42.308 3.19 0.00 41.44 1.85
4234 5799 4.825085 ACTGAATTTTCCTCGGTTTAGCAA 59.175 37.500 0.00 0.00 0.00 3.91
4252 5817 2.053627 CAACATTTGCGAGCCAAGTTC 58.946 47.619 0.00 0.00 34.34 3.01
4258 5823 2.383527 GCGAGCCAAGTTCGACTGG 61.384 63.158 4.99 3.48 38.48 4.00
4271 5836 3.587797 TCGACTGGATGTACTTTCCAC 57.412 47.619 12.43 5.43 38.35 4.02
4272 5837 2.094906 TCGACTGGATGTACTTTCCACG 60.095 50.000 12.43 14.35 38.35 4.94
4275 5840 4.616604 CGACTGGATGTACTTTCCACGTTA 60.617 45.833 12.43 0.00 38.35 3.18
4279 5844 6.370718 ACTGGATGTACTTTCCACGTTAATTC 59.629 38.462 12.43 0.00 38.35 2.17
4290 5855 0.796312 CGTTAATTCAGTGCCAGCGT 59.204 50.000 0.00 0.00 0.00 5.07
4298 5863 1.141645 CAGTGCCAGCGTAAACGTTA 58.858 50.000 0.00 0.00 42.22 3.18
4299 5864 1.126113 CAGTGCCAGCGTAAACGTTAG 59.874 52.381 0.00 0.00 42.22 2.34
4300 5865 1.000060 AGTGCCAGCGTAAACGTTAGA 60.000 47.619 0.00 0.00 42.22 2.10
4305 5870 3.311106 CCAGCGTAAACGTTAGACAGAA 58.689 45.455 0.00 0.00 42.22 3.02
4307 5872 4.375706 CCAGCGTAAACGTTAGACAGAAAC 60.376 45.833 0.00 0.00 42.22 2.78
4308 5873 3.737774 AGCGTAAACGTTAGACAGAAACC 59.262 43.478 0.00 0.00 42.22 3.27
4311 5876 4.375706 CGTAAACGTTAGACAGAAACCAGC 60.376 45.833 0.00 0.00 34.11 4.85
4312 5877 2.165319 ACGTTAGACAGAAACCAGCC 57.835 50.000 0.00 0.00 0.00 4.85
4313 5878 1.414919 ACGTTAGACAGAAACCAGCCA 59.585 47.619 0.00 0.00 0.00 4.75
4314 5879 1.798813 CGTTAGACAGAAACCAGCCAC 59.201 52.381 0.00 0.00 0.00 5.01
4315 5880 2.548067 CGTTAGACAGAAACCAGCCACT 60.548 50.000 0.00 0.00 0.00 4.00
4317 5882 4.638304 GTTAGACAGAAACCAGCCACTAA 58.362 43.478 0.00 0.00 0.00 2.24
4318 5883 5.246307 GTTAGACAGAAACCAGCCACTAAT 58.754 41.667 0.00 0.00 0.00 1.73
4320 5885 5.499004 AGACAGAAACCAGCCACTAATAA 57.501 39.130 0.00 0.00 0.00 1.40
4327 5892 9.046296 CAGAAACCAGCCACTAATAAATACTAG 57.954 37.037 0.00 0.00 0.00 2.57
4331 5896 8.779096 ACCAGCCACTAATAAATACTAGTAGT 57.221 34.615 8.85 8.14 0.00 2.73
4332 5897 9.872684 ACCAGCCACTAATAAATACTAGTAGTA 57.127 33.333 12.38 12.38 34.82 1.82
4345 5910 5.296151 ACTAGTAGTAGTATGCCCGTACA 57.704 43.478 8.55 0.00 37.76 2.90
4346 5911 5.303971 ACTAGTAGTAGTATGCCCGTACAG 58.696 45.833 8.55 0.00 37.76 2.74
4347 5912 4.428294 AGTAGTAGTATGCCCGTACAGA 57.572 45.455 0.00 0.00 0.00 3.41
4348 5913 4.785301 AGTAGTAGTATGCCCGTACAGAA 58.215 43.478 0.00 0.00 0.00 3.02
4367 5932 4.330074 CAGAACACTCGTTAATCATCACCC 59.670 45.833 0.00 0.00 34.75 4.61
4409 5974 3.873026 GATGGGATCGAGCAGGCCG 62.873 68.421 1.84 0.00 0.00 6.13
4508 6073 1.813337 GAGCTTCCTCCGCTGCTTC 60.813 63.158 0.00 0.00 37.96 3.86
4621 6189 3.474570 CCTCTTCCTCCTGGCCGG 61.475 72.222 3.88 3.88 0.00 6.13
4675 6246 2.821366 GGCGTCCTCGTCGGAGTA 60.821 66.667 0.00 0.00 44.20 2.59
4692 6278 0.931662 GTAGTACGCGTACATGCCGG 60.932 60.000 41.10 0.00 38.48 6.13
4699 6285 3.252484 GTACATGCCGGCGTCGTC 61.252 66.667 20.90 7.97 33.95 4.20
4734 6320 3.819902 GGAGTAGTGGTAATCGGAGTAGG 59.180 52.174 0.00 0.00 0.00 3.18
4738 6324 1.340568 GTGGTAATCGGAGTAGGAGCC 59.659 57.143 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.947244 CAAGTGACACACTCTTGCCC 59.053 55.000 8.59 0.00 44.62 5.36
1 2 0.947244 CCAAGTGACACACTCTTGCC 59.053 55.000 8.59 0.00 44.62 4.52
2 3 0.308993 GCCAAGTGACACACTCTTGC 59.691 55.000 8.59 5.05 44.62 4.01
3 4 1.331756 GTGCCAAGTGACACACTCTTG 59.668 52.381 8.59 3.45 44.62 3.02
4 5 1.668419 GTGCCAAGTGACACACTCTT 58.332 50.000 8.59 0.00 44.62 2.85
5 6 0.530650 CGTGCCAAGTGACACACTCT 60.531 55.000 8.59 0.00 44.62 3.24
6 7 0.810031 ACGTGCCAAGTGACACACTC 60.810 55.000 8.59 0.00 44.62 3.51
8 9 0.450184 AAACGTGCCAAGTGACACAC 59.550 50.000 8.59 0.00 36.57 3.82
9 10 1.169577 AAAACGTGCCAAGTGACACA 58.830 45.000 8.59 0.00 36.57 3.72
10 11 3.359654 CTTAAAACGTGCCAAGTGACAC 58.640 45.455 0.00 0.00 0.00 3.67
11 12 2.223386 GCTTAAAACGTGCCAAGTGACA 60.223 45.455 0.00 0.00 0.00 3.58
12 13 2.381589 GCTTAAAACGTGCCAAGTGAC 58.618 47.619 0.00 0.00 0.00 3.67
13 14 1.335496 GGCTTAAAACGTGCCAAGTGA 59.665 47.619 8.85 0.00 45.46 3.41
14 15 1.766069 GGCTTAAAACGTGCCAAGTG 58.234 50.000 8.85 0.00 45.46 3.16
15 16 0.309612 CGGCTTAAAACGTGCCAAGT 59.690 50.000 13.58 0.00 46.39 3.16
16 17 1.001745 GCGGCTTAAAACGTGCCAAG 61.002 55.000 13.58 6.76 46.39 3.61
17 18 1.008309 GCGGCTTAAAACGTGCCAA 60.008 52.632 13.58 0.00 46.39 4.52
18 19 1.894756 AGCGGCTTAAAACGTGCCA 60.895 52.632 13.58 0.00 46.39 4.92
19 20 1.442017 CAGCGGCTTAAAACGTGCC 60.442 57.895 0.00 3.82 42.94 5.01
20 21 2.080636 GCAGCGGCTTAAAACGTGC 61.081 57.895 0.00 0.00 36.96 5.34
21 22 1.442017 GGCAGCGGCTTAAAACGTG 60.442 57.895 9.17 0.00 40.87 4.49
22 23 2.951458 GGCAGCGGCTTAAAACGT 59.049 55.556 9.17 0.00 40.87 3.99
23 24 2.202298 CGGCAGCGGCTTAAAACG 60.202 61.111 9.17 0.00 40.87 3.60
24 25 2.504026 GCGGCAGCGGCTTAAAAC 60.504 61.111 17.35 0.00 40.87 2.43
49 50 0.178068 TCCATAGAAACGCCCAGAGC 59.822 55.000 0.00 0.00 38.52 4.09
50 51 2.918712 ATCCATAGAAACGCCCAGAG 57.081 50.000 0.00 0.00 0.00 3.35
51 52 3.644966 AAATCCATAGAAACGCCCAGA 57.355 42.857 0.00 0.00 0.00 3.86
52 53 4.718940 AAAAATCCATAGAAACGCCCAG 57.281 40.909 0.00 0.00 0.00 4.45
70 71 4.599047 ATGCCGAAAACATCTGGAAAAA 57.401 36.364 0.00 0.00 0.00 1.94
71 72 4.599047 AATGCCGAAAACATCTGGAAAA 57.401 36.364 0.00 0.00 0.00 2.29
72 73 4.599047 AAATGCCGAAAACATCTGGAAA 57.401 36.364 0.00 0.00 0.00 3.13
73 74 4.599047 AAAATGCCGAAAACATCTGGAA 57.401 36.364 0.00 0.00 0.00 3.53
74 75 5.007034 TCTAAAATGCCGAAAACATCTGGA 58.993 37.500 0.00 0.00 0.00 3.86
75 76 5.095490 GTCTAAAATGCCGAAAACATCTGG 58.905 41.667 0.00 0.00 0.00 3.86
76 77 4.788100 CGTCTAAAATGCCGAAAACATCTG 59.212 41.667 0.00 0.00 0.00 2.90
77 78 4.142687 CCGTCTAAAATGCCGAAAACATCT 60.143 41.667 0.00 0.00 0.00 2.90
78 79 4.095610 CCGTCTAAAATGCCGAAAACATC 58.904 43.478 0.00 0.00 0.00 3.06
79 80 3.119637 CCCGTCTAAAATGCCGAAAACAT 60.120 43.478 0.00 0.00 0.00 2.71
80 81 2.226912 CCCGTCTAAAATGCCGAAAACA 59.773 45.455 0.00 0.00 0.00 2.83
81 82 2.227149 ACCCGTCTAAAATGCCGAAAAC 59.773 45.455 0.00 0.00 0.00 2.43
82 83 2.506444 ACCCGTCTAAAATGCCGAAAA 58.494 42.857 0.00 0.00 0.00 2.29
83 84 2.188062 ACCCGTCTAAAATGCCGAAA 57.812 45.000 0.00 0.00 0.00 3.46
84 85 2.188062 AACCCGTCTAAAATGCCGAA 57.812 45.000 0.00 0.00 0.00 4.30
85 86 2.188062 AAACCCGTCTAAAATGCCGA 57.812 45.000 0.00 0.00 0.00 5.54
86 87 2.486592 AGAAAACCCGTCTAAAATGCCG 59.513 45.455 0.00 0.00 0.00 5.69
87 88 4.514781 AAGAAAACCCGTCTAAAATGCC 57.485 40.909 0.00 0.00 0.00 4.40
88 89 6.838198 AAAAAGAAAACCCGTCTAAAATGC 57.162 33.333 0.00 0.00 0.00 3.56
116 117 5.763204 AGCTAAGAAAGACCGATGAAAAACA 59.237 36.000 0.00 0.00 0.00 2.83
125 126 4.062991 GTCCAAAAGCTAAGAAAGACCGA 58.937 43.478 0.00 0.00 0.00 4.69
183 184 1.391826 CGCAACAAAAAGCAAAACGGT 59.608 42.857 0.00 0.00 0.00 4.83
185 186 1.441777 GCGCAACAAAAAGCAAAACG 58.558 45.000 0.30 0.00 0.00 3.60
192 193 0.998727 GCCTCTCGCGCAACAAAAAG 60.999 55.000 8.75 0.00 0.00 2.27
204 205 0.798776 AAGCAAAATCGTGCCTCTCG 59.201 50.000 0.00 0.00 46.14 4.04
208 209 0.598065 GTGGAAGCAAAATCGTGCCT 59.402 50.000 0.00 0.00 46.14 4.75
213 214 2.160417 GTCTCCTGTGGAAGCAAAATCG 59.840 50.000 0.00 0.00 0.00 3.34
224 225 1.334869 GCAAAACAGTGTCTCCTGTGG 59.665 52.381 0.00 0.00 44.74 4.17
228 229 2.614057 CGAAAGCAAAACAGTGTCTCCT 59.386 45.455 0.00 0.00 0.00 3.69
249 250 2.887568 CACGGTCATGCCTCTCGC 60.888 66.667 4.92 0.00 38.31 5.03
261 262 0.387929 TCGTTTCAGAGAAGCACGGT 59.612 50.000 4.71 0.00 0.00 4.83
297 298 2.990066 AACTATGCCTCTTCCGGAAG 57.010 50.000 34.19 34.19 39.71 3.46
299 300 2.939640 GCAAAACTATGCCTCTTCCGGA 60.940 50.000 0.00 0.00 40.49 5.14
374 380 1.270041 GCCATGTCGCAAAAGGGAAAA 60.270 47.619 0.00 0.00 0.00 2.29
378 384 1.213537 CAGCCATGTCGCAAAAGGG 59.786 57.895 0.00 0.00 0.00 3.95
379 385 0.387622 CACAGCCATGTCGCAAAAGG 60.388 55.000 0.00 0.00 37.65 3.11
380 386 1.005294 GCACAGCCATGTCGCAAAAG 61.005 55.000 0.00 0.00 37.65 2.27
381 387 1.007502 GCACAGCCATGTCGCAAAA 60.008 52.632 0.00 0.00 37.65 2.44
382 388 2.644418 GCACAGCCATGTCGCAAA 59.356 55.556 0.00 0.00 37.65 3.68
436 465 2.365068 CGTGGTCGTGCTTCTCGTG 61.365 63.158 0.00 0.00 0.00 4.35
437 466 2.050351 CGTGGTCGTGCTTCTCGT 60.050 61.111 0.00 0.00 0.00 4.18
443 472 3.616721 AAGAGGCGTGGTCGTGCT 61.617 61.111 0.00 0.00 39.49 4.40
484 513 5.304686 TGCCTCTAGTGGAAAGAAGAAAA 57.695 39.130 15.10 0.00 0.00 2.29
488 517 4.478206 TCATGCCTCTAGTGGAAAGAAG 57.522 45.455 15.10 0.00 0.00 2.85
499 528 4.576053 CACGGAATCAAAATCATGCCTCTA 59.424 41.667 0.00 0.00 0.00 2.43
505 534 4.563976 GCCTTTCACGGAATCAAAATCATG 59.436 41.667 0.00 0.00 0.00 3.07
507 536 3.571828 TGCCTTTCACGGAATCAAAATCA 59.428 39.130 0.00 0.00 0.00 2.57
509 538 3.913089 GTGCCTTTCACGGAATCAAAAT 58.087 40.909 0.00 0.00 35.76 1.82
524 553 2.283884 CGCAAAAACAAAATCGTGCCTT 59.716 40.909 0.00 0.00 0.00 4.35
545 574 0.179124 GAGACACGACCATGCCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
546 575 0.613292 AGAGACACGACCATGCCTCT 60.613 55.000 0.00 0.00 0.00 3.69
547 576 0.247736 AAGAGACACGACCATGCCTC 59.752 55.000 0.00 0.00 0.00 4.70
548 577 0.687354 AAAGAGACACGACCATGCCT 59.313 50.000 0.00 0.00 0.00 4.75
549 578 1.079503 GAAAGAGACACGACCATGCC 58.920 55.000 0.00 0.00 0.00 4.40
550 579 0.716108 CGAAAGAGACACGACCATGC 59.284 55.000 0.00 0.00 0.00 4.06
551 580 2.347697 TCGAAAGAGACACGACCATG 57.652 50.000 0.00 0.00 34.84 3.66
552 581 3.380479 TTTCGAAAGAGACACGACCAT 57.620 42.857 6.47 0.00 43.69 3.55
553 582 2.875087 TTTCGAAAGAGACACGACCA 57.125 45.000 6.47 0.00 43.69 4.02
554 583 2.475487 CCTTTTCGAAAGAGACACGACC 59.525 50.000 10.98 0.00 43.69 4.79
555 584 2.475487 CCCTTTTCGAAAGAGACACGAC 59.525 50.000 10.98 0.00 43.69 4.34
556 585 2.363038 TCCCTTTTCGAAAGAGACACGA 59.637 45.455 10.98 0.00 43.69 4.35
557 586 2.750948 TCCCTTTTCGAAAGAGACACG 58.249 47.619 10.98 0.00 43.69 4.49
558 587 5.494632 TTTTCCCTTTTCGAAAGAGACAC 57.505 39.130 10.98 0.00 43.69 3.67
642 673 8.380742 AGATCTTCAAAACTAGATCCCTGTTA 57.619 34.615 0.00 0.00 38.24 2.41
647 678 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
652 684 3.548268 GGCGTCGAGATCTTCAAAACTAG 59.452 47.826 0.00 0.00 0.00 2.57
663 695 1.202417 TGGATTTCTGGCGTCGAGATC 60.202 52.381 0.00 4.58 0.00 2.75
673 705 5.104374 CCGTTTTCATCATTGGATTTCTGG 58.896 41.667 0.00 0.00 0.00 3.86
674 706 5.713025 ACCGTTTTCATCATTGGATTTCTG 58.287 37.500 0.00 0.00 0.00 3.02
677 709 4.526262 TGGACCGTTTTCATCATTGGATTT 59.474 37.500 0.00 0.00 0.00 2.17
686 718 6.561350 CGTTCAATTTTTGGACCGTTTTCATC 60.561 38.462 0.00 0.00 35.68 2.92
689 721 4.549298 GCGTTCAATTTTTGGACCGTTTTC 60.549 41.667 0.00 0.00 35.68 2.29
700 732 5.341617 TCTTAAACCGTGCGTTCAATTTTT 58.658 33.333 0.00 0.00 31.78 1.94
702 734 4.273969 TCTCTTAAACCGTGCGTTCAATTT 59.726 37.500 0.00 0.00 31.78 1.82
704 736 3.395639 TCTCTTAAACCGTGCGTTCAAT 58.604 40.909 0.00 0.00 31.78 2.57
710 742 4.736793 ACGTTATATCTCTTAAACCGTGCG 59.263 41.667 0.00 0.00 0.00 5.34
751 783 3.312736 AAGTGAGCTTTCCCCTTTTCA 57.687 42.857 0.00 0.00 0.00 2.69
760 792 2.644078 CGCACTGAAAAGTGAGCTTTC 58.356 47.619 9.97 0.00 43.52 2.62
761 793 2.763249 CGCACTGAAAAGTGAGCTTT 57.237 45.000 9.97 0.00 46.01 3.51
795 827 3.692257 AACATCACTCTCACCCTTCAG 57.308 47.619 0.00 0.00 0.00 3.02
798 830 2.711009 TCCAAACATCACTCTCACCCTT 59.289 45.455 0.00 0.00 0.00 3.95
801 833 3.077359 CCTTCCAAACATCACTCTCACC 58.923 50.000 0.00 0.00 0.00 4.02
805 837 4.841246 AGTACTCCTTCCAAACATCACTCT 59.159 41.667 0.00 0.00 0.00 3.24
819 851 5.246307 CCCGAAATCAAAGAAGTACTCCTT 58.754 41.667 0.00 0.00 35.59 3.36
860 902 2.289444 ACCACGGCCCAAATAGATATCG 60.289 50.000 0.00 0.00 0.00 2.92
880 922 0.248289 TTTACTGGGCTAGGCACGAC 59.752 55.000 19.14 0.67 32.76 4.34
931 976 0.689623 CTGGACTGTGGAGGCTCTTT 59.310 55.000 15.23 0.00 0.00 2.52
981 1026 2.039137 GGGAGGGGGAGAAGACGT 59.961 66.667 0.00 0.00 0.00 4.34
982 1027 2.764547 GGGGAGGGGGAGAAGACG 60.765 72.222 0.00 0.00 0.00 4.18
987 1032 4.760220 GGCTTGGGGAGGGGGAGA 62.760 72.222 0.00 0.00 0.00 3.71
994 1039 2.692368 TAGGCCTGGCTTGGGGAG 60.692 66.667 17.99 0.00 0.00 4.30
1194 1239 0.187361 AGGAGGAGGAATCGGGAGAG 59.813 60.000 0.00 0.00 45.48 3.20
1239 1284 1.685302 CGAAAAGCACAAACATCCGG 58.315 50.000 0.00 0.00 0.00 5.14
1415 1462 2.595463 GCAGGAAGCCAGCACACA 60.595 61.111 0.00 0.00 36.03 3.72
1523 1570 5.221843 ACCTGACTAACAACTAAGCAATGGA 60.222 40.000 0.00 0.00 0.00 3.41
1542 1589 3.319031 TCTCATCCAGAGCATACCTGA 57.681 47.619 0.00 0.00 44.35 3.86
1568 1615 5.065859 CCCTGTTCCAAAAACCAAAACATTC 59.934 40.000 0.00 0.00 0.00 2.67
1664 1711 3.819368 CATACCAGCACCATATGAACCA 58.181 45.455 3.65 0.00 0.00 3.67
1672 1719 3.480470 GATACTTGCATACCAGCACCAT 58.520 45.455 0.00 0.00 45.61 3.55
1675 1722 1.261619 GCGATACTTGCATACCAGCAC 59.738 52.381 0.00 0.00 45.61 4.40
1680 1727 5.007626 TGAATCAAAGCGATACTTGCATACC 59.992 40.000 0.00 0.00 39.09 2.73
1693 1740 0.371645 GACCGAGCTGAATCAAAGCG 59.628 55.000 0.00 0.00 45.59 4.68
1694 1743 1.442769 TGACCGAGCTGAATCAAAGC 58.557 50.000 0.00 0.00 41.15 3.51
1709 1758 7.094205 ACTGTAAATCCAACAATCAAGATGACC 60.094 37.037 0.00 0.00 0.00 4.02
1748 1797 9.129209 GTAAGAAGATGCACCAATCTTTTAAAC 57.871 33.333 4.64 0.00 44.96 2.01
1761 1810 6.760770 AGCTTTAGAGATGTAAGAAGATGCAC 59.239 38.462 0.00 0.00 0.00 4.57
1777 1967 5.750067 ACAATTGCAAAACACAGCTTTAGAG 59.250 36.000 1.71 0.00 0.00 2.43
1781 1971 4.093261 GTCACAATTGCAAAACACAGCTTT 59.907 37.500 1.71 0.00 0.00 3.51
1785 1975 2.034675 GCGTCACAATTGCAAAACACAG 60.035 45.455 1.71 0.00 0.00 3.66
1789 1979 3.884169 TCTAGCGTCACAATTGCAAAAC 58.116 40.909 1.71 0.00 0.00 2.43
1795 1985 6.256539 ACATACATCTTCTAGCGTCACAATTG 59.743 38.462 3.24 3.24 0.00 2.32
1796 1986 6.341316 ACATACATCTTCTAGCGTCACAATT 58.659 36.000 0.00 0.00 0.00 2.32
1797 1987 5.907207 ACATACATCTTCTAGCGTCACAAT 58.093 37.500 0.00 0.00 0.00 2.71
1866 2056 0.729140 GGTCAATTTGCGCCGAACTG 60.729 55.000 4.18 0.00 0.00 3.16
1871 2061 3.340953 CTGGGGTCAATTTGCGCCG 62.341 63.158 4.18 10.60 40.13 6.46
1920 2126 2.092646 TGTAGCAGACACCAAACACCTT 60.093 45.455 0.00 0.00 31.20 3.50
2013 2597 4.836125 TCATGCTTGAAAGACAGGTTTC 57.164 40.909 0.00 0.00 37.02 2.78
2020 2604 8.746922 TCAAAATTGTATCATGCTTGAAAGAC 57.253 30.769 6.36 6.13 34.96 3.01
2027 2611 8.526147 AGCTAAGTTCAAAATTGTATCATGCTT 58.474 29.630 0.00 0.00 0.00 3.91
2048 2632 0.180171 ACACACAGGCACACAGCTAA 59.820 50.000 0.00 0.00 44.79 3.09
2059 2643 5.116180 TCTTGTTCTTGAACTACACACAGG 58.884 41.667 13.65 0.00 0.00 4.00
2060 2644 6.479990 TGATCTTGTTCTTGAACTACACACAG 59.520 38.462 13.65 0.00 0.00 3.66
2061 2645 6.345298 TGATCTTGTTCTTGAACTACACACA 58.655 36.000 13.65 5.75 0.00 3.72
2062 2646 6.073548 CCTGATCTTGTTCTTGAACTACACAC 60.074 42.308 13.65 3.73 0.00 3.82
2063 2647 5.991606 CCTGATCTTGTTCTTGAACTACACA 59.008 40.000 13.65 7.52 0.00 3.72
2064 2648 5.409826 CCCTGATCTTGTTCTTGAACTACAC 59.590 44.000 13.65 4.13 0.00 2.90
2065 2649 5.071788 ACCCTGATCTTGTTCTTGAACTACA 59.928 40.000 13.65 6.72 0.00 2.74
2066 2650 5.552178 ACCCTGATCTTGTTCTTGAACTAC 58.448 41.667 13.65 3.30 0.00 2.73
2067 2651 5.825593 ACCCTGATCTTGTTCTTGAACTA 57.174 39.130 13.65 6.32 0.00 2.24
2068 2652 4.713792 ACCCTGATCTTGTTCTTGAACT 57.286 40.909 13.65 0.00 0.00 3.01
2069 2653 7.454260 AAATACCCTGATCTTGTTCTTGAAC 57.546 36.000 6.56 6.56 0.00 3.18
2150 2734 4.934356 AGATGGCATTTCTTTACCTTCCA 58.066 39.130 0.00 0.00 0.00 3.53
2152 2736 4.339530 GGGAGATGGCATTTCTTTACCTTC 59.660 45.833 16.52 0.00 0.00 3.46
2153 2737 4.264352 TGGGAGATGGCATTTCTTTACCTT 60.264 41.667 16.52 0.00 0.00 3.50
2195 2779 2.191128 AAATCTGTCCAGCCAGTCAC 57.809 50.000 0.00 0.00 34.02 3.67
2228 2812 9.236691 CCATGTTTATGATTCTAAATTCAACCG 57.763 33.333 0.00 0.00 36.36 4.44
2241 2825 6.357579 TGCAGAAAACCCATGTTTATGATT 57.642 33.333 6.19 0.00 43.80 2.57
2501 3085 4.404691 GGAGGGACCTGCACAAAG 57.595 61.111 4.88 0.00 34.41 2.77
2604 3188 6.556212 TGTTGTCAACGCTAATTTCAAGAAA 58.444 32.000 11.03 0.00 34.46 2.52
2605 3189 6.125327 TGTTGTCAACGCTAATTTCAAGAA 57.875 33.333 11.03 0.00 0.00 2.52
2705 3518 4.864247 GGTTCACAATGATTACCAATGCAC 59.136 41.667 0.00 0.00 29.77 4.57
2707 3520 5.126061 AGAGGTTCACAATGATTACCAATGC 59.874 40.000 3.22 0.00 31.32 3.56
2742 3555 0.038709 GTGCGCCCTTAACAAATGCA 60.039 50.000 4.18 0.00 0.00 3.96
2757 3570 1.800805 ATGGTCACTTTCTCTGTGCG 58.199 50.000 0.00 0.00 35.58 5.34
2966 4084 3.244387 TGGCAAGGTATATGCGATGCTTA 60.244 43.478 15.41 6.28 44.75 3.09
3104 4222 2.235402 GACCCACTTCCCGTTTGAGATA 59.765 50.000 0.00 0.00 0.00 1.98
3115 4233 0.326264 AGTGCAGATGACCCACTTCC 59.674 55.000 0.00 0.00 36.48 3.46
3154 4272 6.721318 ACTACAGAGATTTGGAATAAGCCAA 58.279 36.000 0.00 0.00 45.77 4.52
3155 4273 6.313519 ACTACAGAGATTTGGAATAAGCCA 57.686 37.500 0.00 0.00 35.78 4.75
3156 4274 7.554476 AGAAACTACAGAGATTTGGAATAAGCC 59.446 37.037 0.00 0.00 0.00 4.35
3157 4275 8.499403 AGAAACTACAGAGATTTGGAATAAGC 57.501 34.615 0.00 0.00 0.00 3.09
3158 4276 9.883142 AGAGAAACTACAGAGATTTGGAATAAG 57.117 33.333 0.00 0.00 0.00 1.73
3210 4333 8.665643 TGTAATAACCCAAGATTTACCATACG 57.334 34.615 0.00 0.00 0.00 3.06
3265 4391 8.133627 CCAACAATCAATTGAGGCTAAGATTAG 58.866 37.037 14.54 0.00 40.14 1.73
3313 4439 3.007940 TGCCTGACAACATGTAGCTAAGT 59.992 43.478 0.00 0.00 0.00 2.24
3318 4444 2.838386 CATGCCTGACAACATGTAGC 57.162 50.000 0.00 0.00 39.05 3.58
3358 4484 7.067008 GGCACAGGATAAGAAATTGCTAGTTTA 59.933 37.037 0.00 0.00 0.00 2.01
3359 4485 6.127619 GGCACAGGATAAGAAATTGCTAGTTT 60.128 38.462 0.00 0.00 0.00 2.66
3440 4655 0.955428 TGCAATTCCTCGGACTGCAC 60.955 55.000 14.69 0.00 37.91 4.57
3443 4658 3.728864 CGAAAATGCAATTCCTCGGACTG 60.729 47.826 9.31 0.00 37.69 3.51
3448 4663 3.125146 TGTCTCGAAAATGCAATTCCTCG 59.875 43.478 9.31 6.22 40.72 4.63
3464 4679 4.626172 CAGATGATCAGGCATAATGTCTCG 59.374 45.833 0.09 0.00 23.66 4.04
3472 4835 5.163269 ACAAAGTAGCAGATGATCAGGCATA 60.163 40.000 16.23 5.99 0.00 3.14
3507 4870 0.732571 CAAACGTTGGGAGCGCATAT 59.267 50.000 11.47 0.00 0.00 1.78
3510 4873 3.959975 GCAAACGTTGGGAGCGCA 61.960 61.111 11.47 0.00 0.00 6.09
3640 5003 3.760151 TGATTGCAAGCAGCTAATCAAGT 59.240 39.130 14.49 0.00 42.37 3.16
3684 5050 6.183360 GGAGAAGCAGAGAGTCCATATATACG 60.183 46.154 0.00 0.00 0.00 3.06
3699 5076 2.124983 GCGGCATGGAGAAGCAGA 60.125 61.111 0.00 0.00 0.00 4.26
3713 5090 3.307242 GCAAAACTATCAGACTACTGCGG 59.693 47.826 0.00 0.00 43.17 5.69
3736 5113 1.202940 AGGTTTTGAGCCTGGAACTCC 60.203 52.381 0.00 0.00 34.56 3.85
3783 5160 5.550981 CAATTAGCAAAGCTACGTACTGTG 58.449 41.667 9.63 9.63 41.12 3.66
3786 5163 4.859629 GCAATTAGCAAAGCTACGTACT 57.140 40.909 0.00 0.00 41.12 2.73
3832 5209 2.105766 GAGCCAAGGAATCCAGCAAAT 58.894 47.619 0.61 0.00 0.00 2.32
3833 5210 1.549203 GAGCCAAGGAATCCAGCAAA 58.451 50.000 0.61 0.00 0.00 3.68
3837 5216 2.494870 CAAAAGGAGCCAAGGAATCCAG 59.505 50.000 0.61 0.00 35.45 3.86
3900 5281 6.700081 TGCATTGTAGTACGAATTCATACTCC 59.300 38.462 16.91 7.35 33.65 3.85
3903 5284 7.851508 ACATGCATTGTAGTACGAATTCATAC 58.148 34.615 3.48 3.48 36.57 2.39
3905 5286 6.925610 ACATGCATTGTAGTACGAATTCAT 57.074 33.333 6.22 0.00 36.57 2.57
3907 5288 8.765219 AGATTACATGCATTGTAGTACGAATTC 58.235 33.333 0.00 0.00 41.72 2.17
3909 5290 8.551205 CAAGATTACATGCATTGTAGTACGAAT 58.449 33.333 0.00 0.00 41.72 3.34
3916 5297 6.845302 ACACACAAGATTACATGCATTGTAG 58.155 36.000 0.00 0.00 41.72 2.74
3919 5300 8.518151 TTTTACACACAAGATTACATGCATTG 57.482 30.769 0.00 0.00 0.00 2.82
3930 5311 4.315803 CTCGGTCCTTTTACACACAAGAT 58.684 43.478 0.00 0.00 0.00 2.40
3931 5312 3.724374 CTCGGTCCTTTTACACACAAGA 58.276 45.455 0.00 0.00 0.00 3.02
3932 5313 2.223377 GCTCGGTCCTTTTACACACAAG 59.777 50.000 0.00 0.00 0.00 3.16
3934 5315 1.139256 TGCTCGGTCCTTTTACACACA 59.861 47.619 0.00 0.00 0.00 3.72
3935 5316 1.873698 TGCTCGGTCCTTTTACACAC 58.126 50.000 0.00 0.00 0.00 3.82
3936 5317 2.103432 TCTTGCTCGGTCCTTTTACACA 59.897 45.455 0.00 0.00 0.00 3.72
3940 5332 3.323979 AGAGTTCTTGCTCGGTCCTTTTA 59.676 43.478 0.00 0.00 40.26 1.52
3962 5354 4.511617 TTATCAAACGCTGAATTTGGCA 57.488 36.364 0.00 0.00 37.67 4.92
3975 5367 6.966021 TGGTAAAGCAGACTGTTTATCAAAC 58.034 36.000 15.29 6.82 41.73 2.93
3976 5368 7.575414 TTGGTAAAGCAGACTGTTTATCAAA 57.425 32.000 21.26 10.53 36.66 2.69
3978 5370 6.770785 AGTTTGGTAAAGCAGACTGTTTATCA 59.229 34.615 4.86 10.92 29.32 2.15
3979 5371 7.203255 AGTTTGGTAAAGCAGACTGTTTATC 57.797 36.000 4.86 8.80 0.00 1.75
3980 5372 7.284489 TGAAGTTTGGTAAAGCAGACTGTTTAT 59.716 33.333 4.86 0.00 0.00 1.40
3982 5374 5.417580 TGAAGTTTGGTAAAGCAGACTGTTT 59.582 36.000 3.99 0.82 0.00 2.83
3983 5375 4.947388 TGAAGTTTGGTAAAGCAGACTGTT 59.053 37.500 3.99 0.00 0.00 3.16
3984 5376 4.523083 TGAAGTTTGGTAAAGCAGACTGT 58.477 39.130 3.99 0.00 0.00 3.55
3985 5377 5.499139 TTGAAGTTTGGTAAAGCAGACTG 57.501 39.130 6.17 0.00 0.00 3.51
3986 5378 5.827797 TGATTGAAGTTTGGTAAAGCAGACT 59.172 36.000 0.00 0.00 0.00 3.24
3987 5379 6.072112 TGATTGAAGTTTGGTAAAGCAGAC 57.928 37.500 0.00 0.00 0.00 3.51
3990 5382 6.096141 TCACTTGATTGAAGTTTGGTAAAGCA 59.904 34.615 0.00 0.00 42.70 3.91
3991 5383 6.503524 TCACTTGATTGAAGTTTGGTAAAGC 58.496 36.000 0.00 0.00 42.70 3.51
3992 5384 8.571336 AGATCACTTGATTGAAGTTTGGTAAAG 58.429 33.333 0.00 0.00 42.70 1.85
3995 5387 8.463930 AAAGATCACTTGATTGAAGTTTGGTA 57.536 30.769 0.00 0.00 42.70 3.25
4017 5557 5.352293 TGTCAGCATAAGCACAGTGATAAAG 59.648 40.000 4.15 0.00 45.49 1.85
4026 5566 3.683365 TCTTCTGTCAGCATAAGCACA 57.317 42.857 0.00 0.00 45.49 4.57
4038 5578 6.578023 ACAATAAGCTCAGGTATCTTCTGTC 58.422 40.000 0.00 0.00 34.15 3.51
4040 5580 7.550551 TGAAACAATAAGCTCAGGTATCTTCTG 59.449 37.037 0.00 0.00 0.00 3.02
4048 5588 6.016777 CAGAAGTTGAAACAATAAGCTCAGGT 60.017 38.462 0.00 0.00 0.00 4.00
4049 5589 6.205464 TCAGAAGTTGAAACAATAAGCTCAGG 59.795 38.462 0.00 0.00 31.34 3.86
4050 5590 7.194607 TCAGAAGTTGAAACAATAAGCTCAG 57.805 36.000 0.00 0.00 31.34 3.35
4051 5591 7.566760 TTCAGAAGTTGAAACAATAAGCTCA 57.433 32.000 0.00 0.00 42.69 4.26
4093 5635 9.897744 TGACTGATTTTTCATGAATCTACAAAC 57.102 29.630 9.40 2.97 35.15 2.93
4148 5691 9.305925 CCTTTGGTTAATCTATTCATTTCAAGC 57.694 33.333 0.00 0.00 0.00 4.01
4153 5697 8.466798 CCGTTCCTTTGGTTAATCTATTCATTT 58.533 33.333 0.00 0.00 0.00 2.32
4156 5700 5.355910 GCCGTTCCTTTGGTTAATCTATTCA 59.644 40.000 0.00 0.00 0.00 2.57
4157 5701 5.220989 GGCCGTTCCTTTGGTTAATCTATTC 60.221 44.000 0.00 0.00 0.00 1.75
4158 5702 4.643334 GGCCGTTCCTTTGGTTAATCTATT 59.357 41.667 0.00 0.00 0.00 1.73
4160 5704 3.009253 TGGCCGTTCCTTTGGTTAATCTA 59.991 43.478 0.00 0.00 35.26 1.98
4161 5705 2.224917 TGGCCGTTCCTTTGGTTAATCT 60.225 45.455 0.00 0.00 35.26 2.40
4162 5706 2.164338 TGGCCGTTCCTTTGGTTAATC 58.836 47.619 0.00 0.00 35.26 1.75
4174 5739 2.752903 AGACATTTGGTTATGGCCGTTC 59.247 45.455 0.77 0.00 33.84 3.95
4203 5768 3.437049 CGAGGAAAATTCAGTTCTGGTCC 59.563 47.826 0.00 0.00 0.00 4.46
4204 5769 3.437049 CCGAGGAAAATTCAGTTCTGGTC 59.563 47.826 0.00 0.00 0.00 4.02
4206 5771 3.412386 ACCGAGGAAAATTCAGTTCTGG 58.588 45.455 0.00 0.00 0.00 3.86
4208 5773 5.181433 GCTAAACCGAGGAAAATTCAGTTCT 59.819 40.000 0.00 0.00 0.00 3.01
4209 5774 5.048991 TGCTAAACCGAGGAAAATTCAGTTC 60.049 40.000 0.00 0.00 0.00 3.01
4210 5775 4.825085 TGCTAAACCGAGGAAAATTCAGTT 59.175 37.500 0.00 0.00 0.00 3.16
4211 5776 4.394729 TGCTAAACCGAGGAAAATTCAGT 58.605 39.130 0.00 0.00 0.00 3.41
4213 5778 4.580995 TGTTGCTAAACCGAGGAAAATTCA 59.419 37.500 0.00 0.00 35.25 2.57
4214 5779 5.116069 TGTTGCTAAACCGAGGAAAATTC 57.884 39.130 0.00 0.00 35.25 2.17
4215 5780 5.722021 ATGTTGCTAAACCGAGGAAAATT 57.278 34.783 0.00 0.00 35.25 1.82
4216 5781 5.722021 AATGTTGCTAAACCGAGGAAAAT 57.278 34.783 0.00 0.00 35.25 1.82
4217 5782 5.285651 CAAATGTTGCTAAACCGAGGAAAA 58.714 37.500 0.00 0.00 35.25 2.29
4218 5783 4.865776 CAAATGTTGCTAAACCGAGGAAA 58.134 39.130 0.00 0.00 35.25 3.13
4219 5784 4.497473 CAAATGTTGCTAAACCGAGGAA 57.503 40.909 0.00 0.00 35.25 3.36
4234 5799 0.238289 CGAACTTGGCTCGCAAATGT 59.762 50.000 0.00 0.00 0.00 2.71
4244 5809 2.000447 GTACATCCAGTCGAACTTGGC 59.000 52.381 6.93 0.00 0.00 4.52
4245 5810 3.594603 AGTACATCCAGTCGAACTTGG 57.405 47.619 5.70 5.70 0.00 3.61
4258 5823 7.234384 CACTGAATTAACGTGGAAAGTACATC 58.766 38.462 0.00 0.00 0.00 3.06
4271 5836 0.796312 ACGCTGGCACTGAATTAACG 59.204 50.000 0.00 0.00 0.00 3.18
4272 5837 4.156182 GTTTACGCTGGCACTGAATTAAC 58.844 43.478 0.00 0.00 0.00 2.01
4275 5840 1.196808 CGTTTACGCTGGCACTGAATT 59.803 47.619 0.00 0.00 0.00 2.17
4279 5844 1.126113 CTAACGTTTACGCTGGCACTG 59.874 52.381 5.91 0.00 44.43 3.66
4290 5855 4.060205 GGCTGGTTTCTGTCTAACGTTTA 58.940 43.478 5.91 0.00 0.00 2.01
4298 5863 5.499004 TTATTAGTGGCTGGTTTCTGTCT 57.501 39.130 0.00 0.00 0.00 3.41
4299 5864 6.759497 ATTTATTAGTGGCTGGTTTCTGTC 57.241 37.500 0.00 0.00 0.00 3.51
4300 5865 7.402862 AGTATTTATTAGTGGCTGGTTTCTGT 58.597 34.615 0.00 0.00 0.00 3.41
4305 5870 9.210228 ACTACTAGTATTTATTAGTGGCTGGTT 57.790 33.333 2.33 0.00 32.69 3.67
4318 5883 9.436957 GTACGGGCATACTACTACTAGTATTTA 57.563 37.037 2.33 0.00 41.60 1.40
4320 5885 7.453393 TGTACGGGCATACTACTACTAGTATT 58.547 38.462 2.33 0.00 41.60 1.89
4327 5892 4.336433 TGTTCTGTACGGGCATACTACTAC 59.664 45.833 0.85 0.00 0.00 2.73
4329 5894 3.129988 GTGTTCTGTACGGGCATACTACT 59.870 47.826 0.85 0.00 0.00 2.57
4330 5895 3.129988 AGTGTTCTGTACGGGCATACTAC 59.870 47.826 0.85 0.00 0.00 2.73
4331 5896 3.359033 AGTGTTCTGTACGGGCATACTA 58.641 45.455 0.85 0.00 0.00 1.82
4332 5897 2.165845 GAGTGTTCTGTACGGGCATACT 59.834 50.000 0.85 3.12 0.00 2.12
4333 5898 2.537401 GAGTGTTCTGTACGGGCATAC 58.463 52.381 0.85 0.00 0.00 2.39
4334 5899 1.133598 CGAGTGTTCTGTACGGGCATA 59.866 52.381 0.85 0.00 0.00 3.14
4335 5900 0.108804 CGAGTGTTCTGTACGGGCAT 60.109 55.000 0.85 0.00 0.00 4.40
4337 5902 0.319297 AACGAGTGTTCTGTACGGGC 60.319 55.000 0.85 0.00 30.83 6.13
4338 5903 2.995466 TAACGAGTGTTCTGTACGGG 57.005 50.000 0.85 0.00 39.54 5.28
4339 5904 4.478699 TGATTAACGAGTGTTCTGTACGG 58.521 43.478 0.00 0.00 39.54 4.02
4341 5906 6.034683 GGTGATGATTAACGAGTGTTCTGTAC 59.965 42.308 0.00 0.00 39.54 2.90
4342 5907 6.097356 GGTGATGATTAACGAGTGTTCTGTA 58.903 40.000 0.00 0.00 39.54 2.74
4344 5909 4.330074 GGGTGATGATTAACGAGTGTTCTG 59.670 45.833 0.00 0.00 39.54 3.02
4345 5910 4.020573 TGGGTGATGATTAACGAGTGTTCT 60.021 41.667 0.00 0.00 39.54 3.01
4346 5911 4.250464 TGGGTGATGATTAACGAGTGTTC 58.750 43.478 0.00 0.00 39.54 3.18
4347 5912 4.020573 TCTGGGTGATGATTAACGAGTGTT 60.021 41.667 0.00 0.00 42.19 3.32
4348 5913 3.513912 TCTGGGTGATGATTAACGAGTGT 59.486 43.478 0.00 0.00 0.00 3.55
4367 5932 2.035704 CCTGGACCTCGAGATTGATCTG 59.964 54.545 15.71 0.00 37.25 2.90
4599 6167 3.474570 CAGGAGGAAGAGGGCCGG 61.475 72.222 0.00 0.00 0.00 6.13
4605 6173 4.168291 GCCGGCCAGGAGGAAGAG 62.168 72.222 18.11 0.00 45.00 2.85
4632 6203 4.507916 CGAGGAGGGCGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
4664 6235 1.272131 CGCGTACTACTCCGACGAG 59.728 63.158 0.00 0.00 42.32 4.18
4667 6238 0.999406 TGTACGCGTACTACTCCGAC 59.001 55.000 39.69 20.88 37.00 4.79
4669 6240 1.918974 GCATGTACGCGTACTACTCCG 60.919 57.143 39.69 25.00 37.00 4.63
4671 6242 1.751552 GGCATGTACGCGTACTACTC 58.248 55.000 39.69 27.36 37.00 2.59
4672 6243 0.028505 CGGCATGTACGCGTACTACT 59.971 55.000 39.69 25.76 37.00 2.57
4675 6246 2.103538 CCGGCATGTACGCGTACT 59.896 61.111 39.69 26.56 37.00 2.73
4705 6291 1.078709 TTACCACTACTCCGTCGACG 58.921 55.000 30.33 30.33 39.44 5.12
4710 6296 2.295885 CTCCGATTACCACTACTCCGT 58.704 52.381 0.00 0.00 0.00 4.69
4713 6299 4.712476 TCCTACTCCGATTACCACTACTC 58.288 47.826 0.00 0.00 0.00 2.59
4714 6300 4.716794 CTCCTACTCCGATTACCACTACT 58.283 47.826 0.00 0.00 0.00 2.57
4716 6302 3.484407 GCTCCTACTCCGATTACCACTA 58.516 50.000 0.00 0.00 0.00 2.74
4717 6303 2.308690 GCTCCTACTCCGATTACCACT 58.691 52.381 0.00 0.00 0.00 4.00
4718 6304 1.340568 GGCTCCTACTCCGATTACCAC 59.659 57.143 0.00 0.00 0.00 4.16
4719 6305 1.700955 GGCTCCTACTCCGATTACCA 58.299 55.000 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.