Multiple sequence alignment - TraesCS7A01G166700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G166700 | chr7A | 100.000 | 2636 | 0 | 0 | 900 | 3535 | 122163860 | 122166495 | 0.000000e+00 | 4868 |
1 | TraesCS7A01G166700 | chr7A | 100.000 | 561 | 0 | 0 | 1 | 561 | 122162961 | 122163521 | 0.000000e+00 | 1037 |
2 | TraesCS7A01G166700 | chr7B | 88.613 | 1853 | 119 | 37 | 900 | 2697 | 78227308 | 78229123 | 0.000000e+00 | 2169 |
3 | TraesCS7A01G166700 | chr7B | 85.246 | 1891 | 156 | 56 | 900 | 2721 | 78321131 | 78322967 | 0.000000e+00 | 1832 |
4 | TraesCS7A01G166700 | chr7B | 90.984 | 244 | 17 | 2 | 318 | 561 | 78227010 | 78227248 | 1.220000e-84 | 324 |
5 | TraesCS7A01G166700 | chr7D | 88.545 | 1196 | 80 | 28 | 1555 | 2718 | 117749676 | 117750846 | 0.000000e+00 | 1397 |
6 | TraesCS7A01G166700 | chr7D | 85.582 | 756 | 82 | 9 | 2801 | 3534 | 117751625 | 117752375 | 0.000000e+00 | 767 |
7 | TraesCS7A01G166700 | chr7D | 88.926 | 605 | 52 | 8 | 900 | 1496 | 117749068 | 117749665 | 0.000000e+00 | 732 |
8 | TraesCS7A01G166700 | chr7D | 83.974 | 780 | 82 | 16 | 2779 | 3535 | 414493791 | 414494550 | 0.000000e+00 | 708 |
9 | TraesCS7A01G166700 | chr7D | 94.301 | 193 | 11 | 0 | 369 | 561 | 117748823 | 117749015 | 2.670000e-76 | 296 |
10 | TraesCS7A01G166700 | chr7D | 95.513 | 156 | 6 | 1 | 164 | 318 | 117748397 | 117748552 | 7.580000e-62 | 248 |
11 | TraesCS7A01G166700 | chr6A | 85.696 | 783 | 85 | 10 | 2777 | 3535 | 115035302 | 115036081 | 0.000000e+00 | 800 |
12 | TraesCS7A01G166700 | chr5D | 85.733 | 778 | 88 | 8 | 2779 | 3535 | 497817420 | 497818195 | 0.000000e+00 | 800 |
13 | TraesCS7A01G166700 | chr5D | 85.256 | 780 | 89 | 9 | 2779 | 3534 | 458000906 | 458001683 | 0.000000e+00 | 780 |
14 | TraesCS7A01G166700 | chr5D | 83.762 | 622 | 75 | 9 | 2779 | 3378 | 456615168 | 456615785 | 1.840000e-157 | 566 |
15 | TraesCS7A01G166700 | chr6D | 85.752 | 765 | 98 | 8 | 2779 | 3535 | 262299925 | 262300686 | 0.000000e+00 | 798 |
16 | TraesCS7A01G166700 | chr6D | 85.733 | 771 | 84 | 8 | 2788 | 3535 | 93632723 | 93631956 | 0.000000e+00 | 791 |
17 | TraesCS7A01G166700 | chr2D | 85.385 | 780 | 85 | 10 | 2779 | 3535 | 587269404 | 587270177 | 0.000000e+00 | 782 |
18 | TraesCS7A01G166700 | chr2D | 85.233 | 772 | 84 | 12 | 2790 | 3535 | 69500377 | 69499610 | 0.000000e+00 | 767 |
19 | TraesCS7A01G166700 | chr2D | 84.891 | 781 | 91 | 10 | 2779 | 3535 | 218350269 | 218349492 | 0.000000e+00 | 763 |
20 | TraesCS7A01G166700 | chr2D | 84.785 | 769 | 91 | 14 | 2790 | 3535 | 423335432 | 423334667 | 0.000000e+00 | 749 |
21 | TraesCS7A01G166700 | chr2D | 88.347 | 369 | 37 | 4 | 2777 | 3141 | 373983390 | 373983756 | 4.190000e-119 | 438 |
22 | TraesCS7A01G166700 | chr2A | 85.204 | 784 | 79 | 17 | 2779 | 3535 | 57542795 | 57543568 | 0.000000e+00 | 771 |
23 | TraesCS7A01G166700 | chr1D | 85.344 | 771 | 81 | 10 | 2788 | 3535 | 277993794 | 277994555 | 0.000000e+00 | 769 |
24 | TraesCS7A01G166700 | chr5A | 84.744 | 780 | 92 | 10 | 2780 | 3535 | 63382357 | 63383133 | 0.000000e+00 | 756 |
25 | TraesCS7A01G166700 | chr3B | 88.660 | 388 | 42 | 2 | 3149 | 3535 | 646749683 | 646749297 | 4.130000e-129 | 472 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G166700 | chr7A | 122162961 | 122166495 | 3534 | False | 2952.5 | 4868 | 100.0000 | 1 | 3535 | 2 | chr7A.!!$F1 | 3534 |
1 | TraesCS7A01G166700 | chr7B | 78321131 | 78322967 | 1836 | False | 1832.0 | 1832 | 85.2460 | 900 | 2721 | 1 | chr7B.!!$F1 | 1821 |
2 | TraesCS7A01G166700 | chr7B | 78227010 | 78229123 | 2113 | False | 1246.5 | 2169 | 89.7985 | 318 | 2697 | 2 | chr7B.!!$F2 | 2379 |
3 | TraesCS7A01G166700 | chr7D | 414493791 | 414494550 | 759 | False | 708.0 | 708 | 83.9740 | 2779 | 3535 | 1 | chr7D.!!$F1 | 756 |
4 | TraesCS7A01G166700 | chr7D | 117748397 | 117752375 | 3978 | False | 688.0 | 1397 | 90.5734 | 164 | 3534 | 5 | chr7D.!!$F2 | 3370 |
5 | TraesCS7A01G166700 | chr6A | 115035302 | 115036081 | 779 | False | 800.0 | 800 | 85.6960 | 2777 | 3535 | 1 | chr6A.!!$F1 | 758 |
6 | TraesCS7A01G166700 | chr5D | 497817420 | 497818195 | 775 | False | 800.0 | 800 | 85.7330 | 2779 | 3535 | 1 | chr5D.!!$F3 | 756 |
7 | TraesCS7A01G166700 | chr5D | 458000906 | 458001683 | 777 | False | 780.0 | 780 | 85.2560 | 2779 | 3534 | 1 | chr5D.!!$F2 | 755 |
8 | TraesCS7A01G166700 | chr5D | 456615168 | 456615785 | 617 | False | 566.0 | 566 | 83.7620 | 2779 | 3378 | 1 | chr5D.!!$F1 | 599 |
9 | TraesCS7A01G166700 | chr6D | 262299925 | 262300686 | 761 | False | 798.0 | 798 | 85.7520 | 2779 | 3535 | 1 | chr6D.!!$F1 | 756 |
10 | TraesCS7A01G166700 | chr6D | 93631956 | 93632723 | 767 | True | 791.0 | 791 | 85.7330 | 2788 | 3535 | 1 | chr6D.!!$R1 | 747 |
11 | TraesCS7A01G166700 | chr2D | 587269404 | 587270177 | 773 | False | 782.0 | 782 | 85.3850 | 2779 | 3535 | 1 | chr2D.!!$F2 | 756 |
12 | TraesCS7A01G166700 | chr2D | 69499610 | 69500377 | 767 | True | 767.0 | 767 | 85.2330 | 2790 | 3535 | 1 | chr2D.!!$R1 | 745 |
13 | TraesCS7A01G166700 | chr2D | 218349492 | 218350269 | 777 | True | 763.0 | 763 | 84.8910 | 2779 | 3535 | 1 | chr2D.!!$R2 | 756 |
14 | TraesCS7A01G166700 | chr2D | 423334667 | 423335432 | 765 | True | 749.0 | 749 | 84.7850 | 2790 | 3535 | 1 | chr2D.!!$R3 | 745 |
15 | TraesCS7A01G166700 | chr2A | 57542795 | 57543568 | 773 | False | 771.0 | 771 | 85.2040 | 2779 | 3535 | 1 | chr2A.!!$F1 | 756 |
16 | TraesCS7A01G166700 | chr1D | 277993794 | 277994555 | 761 | False | 769.0 | 769 | 85.3440 | 2788 | 3535 | 1 | chr1D.!!$F1 | 747 |
17 | TraesCS7A01G166700 | chr5A | 63382357 | 63383133 | 776 | False | 756.0 | 756 | 84.7440 | 2780 | 3535 | 1 | chr5A.!!$F1 | 755 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
141 | 142 | 0.026803 | GCGAGCGCTAAAATCAGTGG | 59.973 | 55.0 | 11.50 | 0.0 | 38.26 | 4.00 | F |
144 | 145 | 0.035056 | AGCGCTAAAATCAGTGGGCT | 60.035 | 50.0 | 8.99 | 0.0 | 42.45 | 5.19 | F |
158 | 159 | 0.038166 | TGGGCTGAATCGAAGGCTTT | 59.962 | 50.0 | 0.00 | 0.0 | 39.99 | 3.51 | F |
432 | 653 | 0.165511 | GCTTGCTCGTTTCAGCTCTG | 59.834 | 55.0 | 0.00 | 0.0 | 40.39 | 3.35 | F |
972 | 1196 | 0.504384 | CTGACGACGTTGTTCTGCTG | 59.496 | 55.0 | 10.42 | 0.0 | 0.00 | 4.41 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1466 | 1699 | 0.106819 | ATGAGGCTCCAGTGCATTCC | 60.107 | 55.000 | 12.86 | 0.0 | 34.04 | 3.01 | R |
2082 | 2395 | 0.232303 | GTCGCCACGAACAACTGAAG | 59.768 | 55.000 | 0.00 | 0.0 | 37.72 | 3.02 | R |
2146 | 2459 | 2.677875 | GGCTTGAGTTGCCCCAGG | 60.678 | 66.667 | 0.00 | 0.0 | 44.32 | 4.45 | R |
2398 | 2711 | 1.068895 | CCAAGCACAAATTCCACTGCA | 59.931 | 47.619 | 0.00 | 0.0 | 31.71 | 4.41 | R |
2666 | 2994 | 0.179129 | CCGGAATCTTTGCATGCCAC | 60.179 | 55.000 | 16.68 | 0.0 | 0.00 | 5.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
17 | 18 | 2.661866 | ACCACTCGCGTGACAAGC | 60.662 | 61.111 | 16.04 | 2.97 | 43.97 | 4.01 |
18 | 19 | 3.414700 | CCACTCGCGTGACAAGCC | 61.415 | 66.667 | 16.04 | 0.00 | 43.97 | 4.35 |
19 | 20 | 2.661537 | CACTCGCGTGACAAGCCA | 60.662 | 61.111 | 16.04 | 0.00 | 43.97 | 4.75 |
20 | 21 | 2.356313 | ACTCGCGTGACAAGCCAG | 60.356 | 61.111 | 16.04 | 7.10 | 0.00 | 4.85 |
21 | 22 | 2.049156 | CTCGCGTGACAAGCCAGA | 60.049 | 61.111 | 5.77 | 0.00 | 0.00 | 3.86 |
22 | 23 | 2.355837 | TCGCGTGACAAGCCAGAC | 60.356 | 61.111 | 5.77 | 0.00 | 0.00 | 3.51 |
23 | 24 | 2.661537 | CGCGTGACAAGCCAGACA | 60.662 | 61.111 | 7.82 | 0.00 | 0.00 | 3.41 |
24 | 25 | 2.661566 | CGCGTGACAAGCCAGACAG | 61.662 | 63.158 | 7.82 | 0.00 | 0.00 | 3.51 |
25 | 26 | 1.300931 | GCGTGACAAGCCAGACAGA | 60.301 | 57.895 | 1.44 | 0.00 | 0.00 | 3.41 |
26 | 27 | 1.560860 | GCGTGACAAGCCAGACAGAC | 61.561 | 60.000 | 1.44 | 0.00 | 0.00 | 3.51 |
27 | 28 | 0.946221 | CGTGACAAGCCAGACAGACC | 60.946 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
28 | 29 | 0.394565 | GTGACAAGCCAGACAGACCT | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
29 | 30 | 0.681733 | TGACAAGCCAGACAGACCTC | 59.318 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
30 | 31 | 0.681733 | GACAAGCCAGACAGACCTCA | 59.318 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
31 | 32 | 0.394565 | ACAAGCCAGACAGACCTCAC | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
32 | 33 | 0.668706 | CAAGCCAGACAGACCTCACG | 60.669 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
33 | 34 | 1.821061 | AAGCCAGACAGACCTCACGG | 61.821 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
34 | 35 | 2.262915 | CCAGACAGACCTCACGGC | 59.737 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
35 | 36 | 2.279069 | CCAGACAGACCTCACGGCT | 61.279 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
36 | 37 | 1.214062 | CAGACAGACCTCACGGCTC | 59.786 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
37 | 38 | 1.075836 | AGACAGACCTCACGGCTCT | 59.924 | 57.895 | 0.00 | 0.00 | 0.00 | 4.09 |
38 | 39 | 1.214062 | GACAGACCTCACGGCTCTG | 59.786 | 63.158 | 0.00 | 0.00 | 40.86 | 3.35 |
39 | 40 | 1.528292 | GACAGACCTCACGGCTCTGT | 61.528 | 60.000 | 4.69 | 4.69 | 45.70 | 3.41 |
40 | 41 | 1.080230 | CAGACCTCACGGCTCTGTG | 60.080 | 63.158 | 2.51 | 2.51 | 41.28 | 3.66 |
41 | 42 | 2.433318 | GACCTCACGGCTCTGTGC | 60.433 | 66.667 | 4.03 | 0.00 | 39.73 | 4.57 |
42 | 43 | 4.363990 | ACCTCACGGCTCTGTGCG | 62.364 | 66.667 | 4.03 | 0.00 | 44.05 | 5.34 |
51 | 52 | 4.873129 | CTCTGTGCGCCGCGGTAT | 62.873 | 66.667 | 28.70 | 0.00 | 0.00 | 2.73 |
52 | 53 | 3.478724 | CTCTGTGCGCCGCGGTATA | 62.479 | 63.158 | 28.70 | 10.30 | 0.00 | 1.47 |
53 | 54 | 2.355837 | CTGTGCGCCGCGGTATAT | 60.356 | 61.111 | 28.70 | 0.00 | 0.00 | 0.86 |
54 | 55 | 1.081041 | CTGTGCGCCGCGGTATATA | 60.081 | 57.895 | 28.70 | 10.13 | 0.00 | 0.86 |
55 | 56 | 0.457853 | CTGTGCGCCGCGGTATATAT | 60.458 | 55.000 | 28.70 | 0.00 | 0.00 | 0.86 |
56 | 57 | 0.734597 | TGTGCGCCGCGGTATATATG | 60.735 | 55.000 | 28.70 | 9.07 | 0.00 | 1.78 |
57 | 58 | 0.734942 | GTGCGCCGCGGTATATATGT | 60.735 | 55.000 | 28.70 | 0.00 | 0.00 | 2.29 |
58 | 59 | 0.810016 | TGCGCCGCGGTATATATGTA | 59.190 | 50.000 | 28.70 | 4.84 | 0.00 | 2.29 |
59 | 60 | 1.406180 | TGCGCCGCGGTATATATGTAT | 59.594 | 47.619 | 28.70 | 0.00 | 0.00 | 2.29 |
60 | 61 | 2.159212 | TGCGCCGCGGTATATATGTATT | 60.159 | 45.455 | 28.70 | 0.00 | 0.00 | 1.89 |
61 | 62 | 3.066481 | TGCGCCGCGGTATATATGTATTA | 59.934 | 43.478 | 28.70 | 0.00 | 0.00 | 0.98 |
62 | 63 | 3.423206 | GCGCCGCGGTATATATGTATTAC | 59.577 | 47.826 | 28.70 | 3.02 | 0.00 | 1.89 |
63 | 64 | 4.600032 | CGCCGCGGTATATATGTATTACA | 58.400 | 43.478 | 28.70 | 0.00 | 0.00 | 2.41 |
64 | 65 | 4.438797 | CGCCGCGGTATATATGTATTACAC | 59.561 | 45.833 | 28.70 | 1.86 | 0.00 | 2.90 |
65 | 66 | 5.585390 | GCCGCGGTATATATGTATTACACT | 58.415 | 41.667 | 28.70 | 0.00 | 0.00 | 3.55 |
66 | 67 | 5.684626 | GCCGCGGTATATATGTATTACACTC | 59.315 | 44.000 | 28.70 | 0.00 | 0.00 | 3.51 |
67 | 68 | 5.905733 | CCGCGGTATATATGTATTACACTCG | 59.094 | 44.000 | 19.50 | 0.00 | 0.00 | 4.18 |
68 | 69 | 5.905733 | CGCGGTATATATGTATTACACTCGG | 59.094 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
69 | 70 | 5.684626 | GCGGTATATATGTATTACACTCGGC | 59.315 | 44.000 | 0.00 | 0.28 | 0.00 | 5.54 |
70 | 71 | 6.459298 | GCGGTATATATGTATTACACTCGGCT | 60.459 | 42.308 | 0.00 | 0.00 | 0.00 | 5.52 |
71 | 72 | 6.910972 | CGGTATATATGTATTACACTCGGCTG | 59.089 | 42.308 | 0.00 | 0.00 | 0.00 | 4.85 |
72 | 73 | 7.201670 | CGGTATATATGTATTACACTCGGCTGA | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 4.26 |
73 | 74 | 8.464404 | GGTATATATGTATTACACTCGGCTGAA | 58.536 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
74 | 75 | 9.286946 | GTATATATGTATTACACTCGGCTGAAC | 57.713 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
75 | 76 | 3.945981 | TGTATTACACTCGGCTGAACA | 57.054 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
76 | 77 | 3.845178 | TGTATTACACTCGGCTGAACAG | 58.155 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
77 | 78 | 3.508402 | TGTATTACACTCGGCTGAACAGA | 59.492 | 43.478 | 5.97 | 0.00 | 0.00 | 3.41 |
78 | 79 | 2.433868 | TTACACTCGGCTGAACAGAC | 57.566 | 50.000 | 5.97 | 1.39 | 0.00 | 3.51 |
85 | 86 | 3.782244 | GCTGAACAGACGGCGCAG | 61.782 | 66.667 | 10.83 | 8.25 | 32.46 | 5.18 |
86 | 87 | 2.356313 | CTGAACAGACGGCGCAGT | 60.356 | 61.111 | 14.51 | 14.51 | 0.00 | 4.40 |
87 | 88 | 2.661537 | TGAACAGACGGCGCAGTG | 60.662 | 61.111 | 20.30 | 7.32 | 0.00 | 3.66 |
88 | 89 | 4.077188 | GAACAGACGGCGCAGTGC | 62.077 | 66.667 | 20.30 | 4.58 | 45.38 | 4.40 |
89 | 90 | 4.609018 | AACAGACGGCGCAGTGCT | 62.609 | 61.111 | 20.30 | 12.11 | 45.43 | 4.40 |
110 | 111 | 2.025727 | CCGATCCGACGGTGTAGC | 59.974 | 66.667 | 14.79 | 0.00 | 46.70 | 3.58 |
111 | 112 | 2.352001 | CGATCCGACGGTGTAGCG | 60.352 | 66.667 | 14.79 | 5.47 | 0.00 | 4.26 |
112 | 113 | 2.654404 | GATCCGACGGTGTAGCGC | 60.654 | 66.667 | 14.79 | 0.00 | 0.00 | 5.92 |
113 | 114 | 4.547905 | ATCCGACGGTGTAGCGCG | 62.548 | 66.667 | 14.79 | 0.00 | 0.00 | 6.86 |
133 | 134 | 3.261951 | GCGGATGCGAGCGCTAAA | 61.262 | 61.111 | 11.50 | 0.00 | 42.51 | 1.85 |
134 | 135 | 2.808958 | GCGGATGCGAGCGCTAAAA | 61.809 | 57.895 | 11.50 | 0.00 | 42.51 | 1.52 |
135 | 136 | 1.934463 | CGGATGCGAGCGCTAAAAT | 59.066 | 52.632 | 11.50 | 3.44 | 42.51 | 1.82 |
136 | 137 | 0.111089 | CGGATGCGAGCGCTAAAATC | 60.111 | 55.000 | 11.50 | 13.37 | 42.51 | 2.17 |
137 | 138 | 0.937304 | GGATGCGAGCGCTAAAATCA | 59.063 | 50.000 | 11.50 | 4.31 | 42.51 | 2.57 |
138 | 139 | 1.070309 | GGATGCGAGCGCTAAAATCAG | 60.070 | 52.381 | 11.50 | 0.00 | 42.51 | 2.90 |
139 | 140 | 1.594862 | GATGCGAGCGCTAAAATCAGT | 59.405 | 47.619 | 11.50 | 0.00 | 42.51 | 3.41 |
140 | 141 | 0.721154 | TGCGAGCGCTAAAATCAGTG | 59.279 | 50.000 | 11.50 | 0.00 | 42.51 | 3.66 |
141 | 142 | 0.026803 | GCGAGCGCTAAAATCAGTGG | 59.973 | 55.000 | 11.50 | 0.00 | 38.26 | 4.00 |
142 | 143 | 0.652592 | CGAGCGCTAAAATCAGTGGG | 59.347 | 55.000 | 11.50 | 0.00 | 0.00 | 4.61 |
143 | 144 | 0.378610 | GAGCGCTAAAATCAGTGGGC | 59.621 | 55.000 | 11.50 | 0.00 | 38.41 | 5.36 |
144 | 145 | 0.035056 | AGCGCTAAAATCAGTGGGCT | 60.035 | 50.000 | 8.99 | 0.00 | 42.45 | 5.19 |
145 | 146 | 0.099436 | GCGCTAAAATCAGTGGGCTG | 59.901 | 55.000 | 0.00 | 0.00 | 43.87 | 4.85 |
154 | 155 | 2.772739 | CAGTGGGCTGAATCGAAGG | 58.227 | 57.895 | 0.00 | 0.00 | 45.28 | 3.46 |
155 | 156 | 1.078143 | AGTGGGCTGAATCGAAGGC | 60.078 | 57.895 | 0.68 | 0.68 | 39.40 | 4.35 |
156 | 157 | 1.078143 | GTGGGCTGAATCGAAGGCT | 60.078 | 57.895 | 8.81 | 0.00 | 39.99 | 4.58 |
157 | 158 | 0.678048 | GTGGGCTGAATCGAAGGCTT | 60.678 | 55.000 | 0.00 | 0.00 | 39.99 | 4.35 |
158 | 159 | 0.038166 | TGGGCTGAATCGAAGGCTTT | 59.962 | 50.000 | 0.00 | 0.00 | 39.99 | 3.51 |
159 | 160 | 0.735471 | GGGCTGAATCGAAGGCTTTC | 59.265 | 55.000 | 0.00 | 0.00 | 39.99 | 2.62 |
160 | 161 | 0.735471 | GGCTGAATCGAAGGCTTTCC | 59.265 | 55.000 | 0.00 | 0.00 | 37.26 | 3.13 |
161 | 162 | 0.375106 | GCTGAATCGAAGGCTTTCCG | 59.625 | 55.000 | 0.00 | 0.93 | 37.47 | 4.30 |
162 | 163 | 1.726853 | CTGAATCGAAGGCTTTCCGT | 58.273 | 50.000 | 0.00 | 0.00 | 37.47 | 4.69 |
163 | 164 | 2.888594 | CTGAATCGAAGGCTTTCCGTA | 58.111 | 47.619 | 0.00 | 0.00 | 37.47 | 4.02 |
164 | 165 | 3.259064 | CTGAATCGAAGGCTTTCCGTAA | 58.741 | 45.455 | 0.00 | 0.00 | 37.47 | 3.18 |
165 | 166 | 3.666274 | TGAATCGAAGGCTTTCCGTAAA | 58.334 | 40.909 | 0.00 | 0.00 | 37.47 | 2.01 |
166 | 167 | 4.066490 | TGAATCGAAGGCTTTCCGTAAAA | 58.934 | 39.130 | 0.00 | 0.00 | 37.47 | 1.52 |
167 | 168 | 4.515944 | TGAATCGAAGGCTTTCCGTAAAAA | 59.484 | 37.500 | 0.00 | 0.00 | 37.47 | 1.94 |
241 | 242 | 4.208746 | AGTTTGAATGGTTTACCGGAACA | 58.791 | 39.130 | 9.46 | 0.00 | 39.43 | 3.18 |
243 | 244 | 2.156098 | TGAATGGTTTACCGGAACAGC | 58.844 | 47.619 | 9.46 | 0.44 | 39.43 | 4.40 |
319 | 526 | 0.761187 | AACTGCTGGAGTTGCTCTCA | 59.239 | 50.000 | 14.00 | 0.00 | 43.71 | 3.27 |
352 | 559 | 1.465354 | GCAATCTTGCGCACTCTTCTG | 60.465 | 52.381 | 11.12 | 4.17 | 45.11 | 3.02 |
357 | 564 | 2.942376 | TCTTGCGCACTCTTCTGAAAAA | 59.058 | 40.909 | 11.12 | 0.00 | 0.00 | 1.94 |
376 | 597 | 1.428869 | ACTTCACTCCTGGTTGCTCT | 58.571 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
397 | 618 | 3.021695 | TGTATCGATTCACCGTCTCCTT | 58.978 | 45.455 | 1.71 | 0.00 | 0.00 | 3.36 |
398 | 619 | 2.586258 | ATCGATTCACCGTCTCCTTG | 57.414 | 50.000 | 0.00 | 0.00 | 0.00 | 3.61 |
432 | 653 | 0.165511 | GCTTGCTCGTTTCAGCTCTG | 59.834 | 55.000 | 0.00 | 0.00 | 40.39 | 3.35 |
921 | 1142 | 5.886960 | GAGATTTACCTCAAAGCACACAT | 57.113 | 39.130 | 0.00 | 0.00 | 34.89 | 3.21 |
965 | 1189 | 0.660595 | CGCTTCTCTGACGACGTTGT | 60.661 | 55.000 | 8.55 | 8.55 | 0.00 | 3.32 |
972 | 1196 | 0.504384 | CTGACGACGTTGTTCTGCTG | 59.496 | 55.000 | 10.42 | 0.00 | 0.00 | 4.41 |
1041 | 1265 | 3.823330 | GAGGACATCGACGGCGGT | 61.823 | 66.667 | 12.58 | 0.00 | 38.28 | 5.68 |
1200 | 1430 | 1.960689 | GCCAAGCACAGGAAGGTAAAA | 59.039 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
1202 | 1432 | 2.558359 | CCAAGCACAGGAAGGTAAAAGG | 59.442 | 50.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1203 | 1433 | 3.486383 | CAAGCACAGGAAGGTAAAAGGA | 58.514 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
1206 | 1436 | 2.423577 | CACAGGAAGGTAAAAGGACCG | 58.576 | 52.381 | 0.00 | 0.00 | 44.88 | 4.79 |
1232 | 1462 | 0.874390 | TGCCGTCTTCTGCATCAAAC | 59.126 | 50.000 | 0.00 | 0.00 | 31.31 | 2.93 |
1237 | 1467 | 3.976942 | CCGTCTTCTGCATCAAACTTTTG | 59.023 | 43.478 | 0.00 | 0.00 | 39.48 | 2.44 |
1344 | 1574 | 2.966516 | AGGGAATCCGATACCTTCACTC | 59.033 | 50.000 | 0.00 | 0.00 | 38.33 | 3.51 |
1414 | 1644 | 9.695526 | TTGTACTGAAAATTCTGGATCAAATTG | 57.304 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
1419 | 1649 | 8.180706 | TGAAAATTCTGGATCAAATTGACTGA | 57.819 | 30.769 | 0.00 | 0.00 | 0.00 | 3.41 |
1420 | 1650 | 8.084073 | TGAAAATTCTGGATCAAATTGACTGAC | 58.916 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
1466 | 1699 | 0.720027 | CTGCATCGAGCTTGTCAGTG | 59.280 | 55.000 | 0.00 | 0.00 | 45.94 | 3.66 |
1541 | 1774 | 7.651027 | TCTACTAGTACAGTTTTACCCATCC | 57.349 | 40.000 | 0.00 | 0.00 | 38.80 | 3.51 |
1542 | 1775 | 7.184161 | TCTACTAGTACAGTTTTACCCATCCA | 58.816 | 38.462 | 0.00 | 0.00 | 38.80 | 3.41 |
1543 | 1776 | 6.886178 | ACTAGTACAGTTTTACCCATCCAT | 57.114 | 37.500 | 0.00 | 0.00 | 31.59 | 3.41 |
1544 | 1777 | 6.885922 | ACTAGTACAGTTTTACCCATCCATC | 58.114 | 40.000 | 0.00 | 0.00 | 31.59 | 3.51 |
1548 | 1781 | 3.756434 | ACAGTTTTACCCATCCATCGTTG | 59.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.10 |
1575 | 1808 | 5.411361 | ACATTTACTGAAGTTTATGCGCAGA | 59.589 | 36.000 | 18.32 | 9.06 | 0.00 | 4.26 |
1717 | 1955 | 4.559502 | GCTGTATCGATCAAGAGGTATGCA | 60.560 | 45.833 | 0.00 | 0.00 | 0.00 | 3.96 |
1718 | 1956 | 5.529581 | TGTATCGATCAAGAGGTATGCAA | 57.470 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
1752 | 2009 | 5.237344 | AGTTCTTGAATGTCTGTTGCAGTAC | 59.763 | 40.000 | 0.00 | 0.00 | 32.61 | 2.73 |
1757 | 2014 | 6.389830 | TGAATGTCTGTTGCAGTACAAATT | 57.610 | 33.333 | 0.00 | 0.00 | 40.82 | 1.82 |
1763 | 2020 | 5.237344 | GTCTGTTGCAGTACAAATTCAGTCT | 59.763 | 40.000 | 0.00 | 0.00 | 40.82 | 3.24 |
1774 | 2031 | 6.292389 | ACAAATTCAGTCTCTTCTCAAACG | 57.708 | 37.500 | 0.00 | 0.00 | 0.00 | 3.60 |
1799 | 2056 | 4.132336 | CAGGTGCACACTTGATATGCTAT | 58.868 | 43.478 | 20.43 | 0.00 | 40.38 | 2.97 |
1850 | 2107 | 1.839994 | CTCCTCTGGGACCTTATGCAA | 59.160 | 52.381 | 0.00 | 0.00 | 36.57 | 4.08 |
1863 | 2120 | 3.193479 | CCTTATGCAAAAGTCCAGGTTCC | 59.807 | 47.826 | 0.00 | 0.00 | 0.00 | 3.62 |
1864 | 2121 | 2.380064 | ATGCAAAAGTCCAGGTTCCA | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
1868 | 2125 | 4.415596 | TGCAAAAGTCCAGGTTCCATTAT | 58.584 | 39.130 | 0.00 | 0.00 | 0.00 | 1.28 |
1869 | 2126 | 5.575157 | TGCAAAAGTCCAGGTTCCATTATA | 58.425 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
1870 | 2127 | 6.194235 | TGCAAAAGTCCAGGTTCCATTATAT | 58.806 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
1871 | 2128 | 6.321181 | TGCAAAAGTCCAGGTTCCATTATATC | 59.679 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
1872 | 2129 | 6.321181 | GCAAAAGTCCAGGTTCCATTATATCA | 59.679 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
1873 | 2130 | 7.682021 | GCAAAAGTCCAGGTTCCATTATATCAC | 60.682 | 40.741 | 0.00 | 0.00 | 0.00 | 3.06 |
1874 | 2131 | 6.831664 | AAGTCCAGGTTCCATTATATCACT | 57.168 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
1875 | 2132 | 6.426646 | AGTCCAGGTTCCATTATATCACTC | 57.573 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1876 | 2133 | 6.146760 | AGTCCAGGTTCCATTATATCACTCT | 58.853 | 40.000 | 0.00 | 0.00 | 0.00 | 3.24 |
1880 | 2137 | 6.933521 | CCAGGTTCCATTATATCACTCTTCTG | 59.066 | 42.308 | 0.00 | 0.00 | 0.00 | 3.02 |
1929 | 2186 | 4.386867 | TCTCGTCAGTTCTTTGTTCAGT | 57.613 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
1948 | 2211 | 6.481434 | TCAGTTAGTTAGCTAATTCTCCCC | 57.519 | 41.667 | 9.88 | 0.00 | 39.17 | 4.81 |
1966 | 2236 | 1.762370 | CCCTTTTTACCCCATGCATCC | 59.238 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
1976 | 2246 | 1.640069 | CATGCATCCGCTCACTTCG | 59.360 | 57.895 | 0.00 | 0.00 | 39.64 | 3.79 |
1981 | 2251 | 2.701780 | ATCCGCTCACTTCGCTCGT | 61.702 | 57.895 | 0.00 | 0.00 | 0.00 | 4.18 |
2007 | 2277 | 2.221169 | GCTGTTGACAATCAGGTGACA | 58.779 | 47.619 | 15.16 | 0.00 | 32.94 | 3.58 |
2013 | 2283 | 5.535783 | TGTTGACAATCAGGTGACAATCAAT | 59.464 | 36.000 | 0.00 | 0.00 | 36.01 | 2.57 |
2015 | 2285 | 6.258230 | TGACAATCAGGTGACAATCAATTC | 57.742 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
2067 | 2354 | 4.988540 | TGTTCCTCACTGTACTGAAATTCG | 59.011 | 41.667 | 6.77 | 0.00 | 0.00 | 3.34 |
2072 | 2359 | 6.071560 | TCCTCACTGTACTGAAATTCGTGTAT | 60.072 | 38.462 | 6.77 | 0.00 | 0.00 | 2.29 |
2082 | 2395 | 4.391830 | TGAAATTCGTGTATCTGTCTTGGC | 59.608 | 41.667 | 0.00 | 0.00 | 0.00 | 4.52 |
2088 | 2401 | 3.615110 | CGTGTATCTGTCTTGGCTTCAGT | 60.615 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2146 | 2459 | 3.112709 | GCAGTCGGACTTCGTGGC | 61.113 | 66.667 | 8.18 | 4.76 | 40.32 | 5.01 |
2182 | 2495 | 1.409427 | CCTCATCGGACCAGTAAGACC | 59.591 | 57.143 | 0.00 | 0.00 | 33.16 | 3.85 |
2248 | 2561 | 5.476599 | TGTGATAATTTGGACTCCAACCAAG | 59.523 | 40.000 | 10.25 | 0.00 | 43.82 | 3.61 |
2376 | 2689 | 3.567164 | ACCTGTCTTTGATTGAAGCTGTG | 59.433 | 43.478 | 0.00 | 0.00 | 0.00 | 3.66 |
2401 | 2714 | 9.237187 | TGAGGTACACAATTATATCTTTTTGCA | 57.763 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
2402 | 2715 | 9.722056 | GAGGTACACAATTATATCTTTTTGCAG | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 4.41 |
2449 | 2767 | 3.551496 | TTTGGGCTCAGGCGTCAGG | 62.551 | 63.158 | 0.00 | 0.00 | 39.81 | 3.86 |
2534 | 2854 | 2.052782 | TCGATGTCGAGAGGGAATGA | 57.947 | 50.000 | 0.21 | 0.00 | 44.22 | 2.57 |
2535 | 2855 | 2.375146 | TCGATGTCGAGAGGGAATGAA | 58.625 | 47.619 | 0.21 | 0.00 | 44.22 | 2.57 |
2576 | 2896 | 2.809665 | GCTCGAGGAGATGGAAATGCAT | 60.810 | 50.000 | 15.58 | 0.00 | 0.00 | 3.96 |
2633 | 2953 | 0.877071 | GTCACATGCTGGGTTCAGTG | 59.123 | 55.000 | 0.00 | 0.00 | 42.78 | 3.66 |
2665 | 2993 | 4.261656 | CGGGGTTTGCAAAATTGTGTAGTA | 60.262 | 41.667 | 14.67 | 0.00 | 0.00 | 1.82 |
2666 | 2994 | 5.227152 | GGGGTTTGCAAAATTGTGTAGTAG | 58.773 | 41.667 | 14.67 | 0.00 | 0.00 | 2.57 |
2667 | 2995 | 5.221362 | GGGGTTTGCAAAATTGTGTAGTAGT | 60.221 | 40.000 | 14.67 | 0.00 | 0.00 | 2.73 |
2683 | 3011 | 3.019564 | AGTAGTGGCATGCAAAGATTCC | 58.980 | 45.455 | 21.36 | 0.00 | 0.00 | 3.01 |
2723 | 3137 | 0.613260 | ACCGATACTGCATGTGTGGT | 59.387 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2724 | 3138 | 1.828595 | ACCGATACTGCATGTGTGGTA | 59.171 | 47.619 | 0.00 | 0.00 | 0.00 | 3.25 |
2736 | 3150 | 3.616284 | TGTGGTACGAACACATGGG | 57.384 | 52.632 | 0.00 | 0.00 | 43.35 | 4.00 |
2757 | 3172 | 7.288810 | TGGGAACTCCAAATATTTATGATGC | 57.711 | 36.000 | 0.00 | 0.00 | 43.84 | 3.91 |
2760 | 3175 | 7.038799 | GGGAACTCCAAATATTTATGATGCCAT | 60.039 | 37.037 | 0.00 | 0.00 | 37.91 | 4.40 |
2761 | 3176 | 9.023962 | GGAACTCCAAATATTTATGATGCCATA | 57.976 | 33.333 | 0.00 | 0.00 | 33.51 | 2.74 |
2766 | 3181 | 9.898152 | TCCAAATATTTATGATGCCATATACGA | 57.102 | 29.630 | 0.00 | 0.00 | 35.38 | 3.43 |
2774 | 3189 | 9.758651 | TTTATGATGCCATATACGATATGTACC | 57.241 | 33.333 | 11.43 | 3.98 | 35.38 | 3.34 |
2775 | 3190 | 5.827666 | TGATGCCATATACGATATGTACCG | 58.172 | 41.667 | 11.43 | 0.00 | 35.44 | 4.02 |
2826 | 3851 | 2.345876 | TCGACGATCATGTTGTGCATT | 58.654 | 42.857 | 0.00 | 0.00 | 35.19 | 3.56 |
2851 | 3876 | 2.106338 | ACACAACATGTCATCACCTCCA | 59.894 | 45.455 | 0.00 | 0.00 | 36.54 | 3.86 |
2852 | 3877 | 2.745821 | CACAACATGTCATCACCTCCAG | 59.254 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
2902 | 3928 | 4.505191 | CAGGTTCATGAACAACTGCAAAAG | 59.495 | 41.667 | 33.42 | 10.75 | 42.85 | 2.27 |
2907 | 3933 | 2.098614 | TGAACAACTGCAAAAGAGGCA | 58.901 | 42.857 | 0.00 | 0.00 | 39.32 | 4.75 |
2969 | 3995 | 3.317993 | GCTTCTTGTCTTTGGGCAAAGTA | 59.682 | 43.478 | 0.00 | 0.00 | 45.88 | 2.24 |
3027 | 4055 | 3.114606 | TGACAAAGATAGCCCATGGAGA | 58.885 | 45.455 | 15.22 | 0.00 | 0.00 | 3.71 |
3098 | 4127 | 4.353777 | ACAGTATAGTGGCAAGGAGAAGA | 58.646 | 43.478 | 12.20 | 0.00 | 0.00 | 2.87 |
3113 | 4142 | 5.555966 | AGGAGAAGATTTTCCTTCAGTCAC | 58.444 | 41.667 | 0.00 | 0.00 | 40.96 | 3.67 |
3116 | 4145 | 5.555966 | AGAAGATTTTCCTTCAGTCACTCC | 58.444 | 41.667 | 0.00 | 0.00 | 43.68 | 3.85 |
3194 | 4247 | 3.430042 | AAGATCCTGTGATGCAACTGT | 57.570 | 42.857 | 0.00 | 0.00 | 0.00 | 3.55 |
3195 | 4248 | 3.430042 | AGATCCTGTGATGCAACTGTT | 57.570 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
3214 | 4267 | 7.154435 | ACTGTTTTCAAGAATGATGATGGAG | 57.846 | 36.000 | 0.00 | 0.00 | 34.96 | 3.86 |
3248 | 4302 | 6.613699 | TGATCCTGATATTGCCCTTGTAAAT | 58.386 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3269 | 4326 | 6.927294 | AATCCTTCGAACAGTTATTCCATC | 57.073 | 37.500 | 0.00 | 0.00 | 0.00 | 3.51 |
3274 | 4331 | 5.614324 | TCGAACAGTTATTCCATCTCCAT | 57.386 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3344 | 4401 | 2.697751 | GAGATTGCCAAGAGCCTCTCTA | 59.302 | 50.000 | 0.00 | 0.00 | 40.28 | 2.43 |
3440 | 4497 | 0.538584 | ATCTCCGCATGTGCTCTCAA | 59.461 | 50.000 | 0.00 | 0.00 | 39.32 | 3.02 |
3523 | 4581 | 2.428491 | CCGTGCACTTATGGTAACCAA | 58.572 | 47.619 | 16.19 | 0.00 | 36.95 | 3.67 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 2.049156 | TCTGGCTTGTCACGCGAG | 60.049 | 61.111 | 15.93 | 4.59 | 34.97 | 5.03 |
6 | 7 | 2.661537 | TGTCTGGCTTGTCACGCG | 60.662 | 61.111 | 3.53 | 3.53 | 0.00 | 6.01 |
7 | 8 | 1.300931 | TCTGTCTGGCTTGTCACGC | 60.301 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
8 | 9 | 0.946221 | GGTCTGTCTGGCTTGTCACG | 60.946 | 60.000 | 0.00 | 0.00 | 0.00 | 4.35 |
10 | 11 | 0.681733 | GAGGTCTGTCTGGCTTGTCA | 59.318 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
11 | 12 | 0.681733 | TGAGGTCTGTCTGGCTTGTC | 59.318 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
12 | 13 | 0.394565 | GTGAGGTCTGTCTGGCTTGT | 59.605 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
13 | 14 | 0.668706 | CGTGAGGTCTGTCTGGCTTG | 60.669 | 60.000 | 0.00 | 0.00 | 0.00 | 4.01 |
14 | 15 | 1.668294 | CGTGAGGTCTGTCTGGCTT | 59.332 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
15 | 16 | 3.371021 | CGTGAGGTCTGTCTGGCT | 58.629 | 61.111 | 0.00 | 0.00 | 0.00 | 4.75 |
34 | 35 | 2.749110 | ATATACCGCGGCGCACAGAG | 62.749 | 60.000 | 32.61 | 14.84 | 0.00 | 3.35 |
35 | 36 | 1.517210 | TATATACCGCGGCGCACAGA | 61.517 | 55.000 | 32.61 | 13.37 | 0.00 | 3.41 |
36 | 37 | 0.457853 | ATATATACCGCGGCGCACAG | 60.458 | 55.000 | 32.61 | 21.38 | 0.00 | 3.66 |
37 | 38 | 0.734597 | CATATATACCGCGGCGCACA | 60.735 | 55.000 | 32.61 | 16.13 | 0.00 | 4.57 |
38 | 39 | 0.734942 | ACATATATACCGCGGCGCAC | 60.735 | 55.000 | 32.61 | 3.11 | 0.00 | 5.34 |
39 | 40 | 0.810016 | TACATATATACCGCGGCGCA | 59.190 | 50.000 | 32.61 | 13.44 | 0.00 | 6.09 |
40 | 41 | 2.129823 | ATACATATATACCGCGGCGC | 57.870 | 50.000 | 28.58 | 24.21 | 0.00 | 6.53 |
41 | 42 | 4.438797 | GTGTAATACATATATACCGCGGCG | 59.561 | 45.833 | 28.58 | 16.78 | 0.00 | 6.46 |
42 | 43 | 5.585390 | AGTGTAATACATATATACCGCGGC | 58.415 | 41.667 | 28.58 | 3.54 | 0.00 | 6.53 |
43 | 44 | 5.905733 | CGAGTGTAATACATATATACCGCGG | 59.094 | 44.000 | 26.86 | 26.86 | 0.00 | 6.46 |
44 | 45 | 5.905733 | CCGAGTGTAATACATATATACCGCG | 59.094 | 44.000 | 0.00 | 0.00 | 0.00 | 6.46 |
45 | 46 | 5.684626 | GCCGAGTGTAATACATATATACCGC | 59.315 | 44.000 | 0.00 | 0.00 | 0.00 | 5.68 |
46 | 47 | 6.910972 | CAGCCGAGTGTAATACATATATACCG | 59.089 | 42.308 | 0.00 | 0.00 | 0.00 | 4.02 |
47 | 48 | 7.993101 | TCAGCCGAGTGTAATACATATATACC | 58.007 | 38.462 | 0.00 | 0.00 | 0.00 | 2.73 |
48 | 49 | 9.286946 | GTTCAGCCGAGTGTAATACATATATAC | 57.713 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
49 | 50 | 9.016438 | TGTTCAGCCGAGTGTAATACATATATA | 57.984 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
50 | 51 | 7.892609 | TGTTCAGCCGAGTGTAATACATATAT | 58.107 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
51 | 52 | 7.229907 | TCTGTTCAGCCGAGTGTAATACATATA | 59.770 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
52 | 53 | 6.040504 | TCTGTTCAGCCGAGTGTAATACATAT | 59.959 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
53 | 54 | 5.358725 | TCTGTTCAGCCGAGTGTAATACATA | 59.641 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
54 | 55 | 4.159693 | TCTGTTCAGCCGAGTGTAATACAT | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
55 | 56 | 3.508402 | TCTGTTCAGCCGAGTGTAATACA | 59.492 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
56 | 57 | 3.858238 | GTCTGTTCAGCCGAGTGTAATAC | 59.142 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
57 | 58 | 3.427098 | CGTCTGTTCAGCCGAGTGTAATA | 60.427 | 47.826 | 0.00 | 0.00 | 0.00 | 0.98 |
58 | 59 | 2.671351 | CGTCTGTTCAGCCGAGTGTAAT | 60.671 | 50.000 | 0.00 | 0.00 | 0.00 | 1.89 |
59 | 60 | 1.335597 | CGTCTGTTCAGCCGAGTGTAA | 60.336 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
60 | 61 | 0.240145 | CGTCTGTTCAGCCGAGTGTA | 59.760 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
61 | 62 | 1.007271 | CGTCTGTTCAGCCGAGTGT | 60.007 | 57.895 | 0.00 | 0.00 | 0.00 | 3.55 |
62 | 63 | 1.734477 | CCGTCTGTTCAGCCGAGTG | 60.734 | 63.158 | 4.85 | 0.00 | 0.00 | 3.51 |
63 | 64 | 2.651361 | CCGTCTGTTCAGCCGAGT | 59.349 | 61.111 | 4.85 | 0.00 | 0.00 | 4.18 |
64 | 65 | 2.811317 | GCCGTCTGTTCAGCCGAG | 60.811 | 66.667 | 4.85 | 0.00 | 0.00 | 4.63 |
65 | 66 | 4.717629 | CGCCGTCTGTTCAGCCGA | 62.718 | 66.667 | 4.85 | 0.00 | 0.00 | 5.54 |
68 | 69 | 3.782244 | CTGCGCCGTCTGTTCAGC | 61.782 | 66.667 | 4.18 | 0.00 | 0.00 | 4.26 |
69 | 70 | 2.356313 | ACTGCGCCGTCTGTTCAG | 60.356 | 61.111 | 4.18 | 0.00 | 0.00 | 3.02 |
70 | 71 | 2.661537 | CACTGCGCCGTCTGTTCA | 60.662 | 61.111 | 4.18 | 0.00 | 0.00 | 3.18 |
71 | 72 | 4.077188 | GCACTGCGCCGTCTGTTC | 62.077 | 66.667 | 4.18 | 0.00 | 32.94 | 3.18 |
72 | 73 | 4.609018 | AGCACTGCGCCGTCTGTT | 62.609 | 61.111 | 4.18 | 0.00 | 44.04 | 3.16 |
94 | 95 | 2.352001 | CGCTACACCGTCGGATCG | 60.352 | 66.667 | 20.51 | 8.41 | 0.00 | 3.69 |
95 | 96 | 2.654404 | GCGCTACACCGTCGGATC | 60.654 | 66.667 | 20.51 | 0.79 | 0.00 | 3.36 |
96 | 97 | 4.547905 | CGCGCTACACCGTCGGAT | 62.548 | 66.667 | 20.51 | 8.21 | 0.00 | 4.18 |
117 | 118 | 0.111089 | GATTTTAGCGCTCGCATCCG | 60.111 | 55.000 | 16.34 | 0.00 | 44.88 | 4.18 |
118 | 119 | 0.937304 | TGATTTTAGCGCTCGCATCC | 59.063 | 50.000 | 16.34 | 0.32 | 44.88 | 3.51 |
119 | 120 | 1.594862 | ACTGATTTTAGCGCTCGCATC | 59.405 | 47.619 | 16.34 | 14.26 | 44.88 | 3.91 |
120 | 121 | 1.328680 | CACTGATTTTAGCGCTCGCAT | 59.671 | 47.619 | 16.34 | 3.54 | 44.88 | 4.73 |
121 | 122 | 0.721154 | CACTGATTTTAGCGCTCGCA | 59.279 | 50.000 | 16.34 | 5.25 | 44.88 | 5.10 |
122 | 123 | 0.026803 | CCACTGATTTTAGCGCTCGC | 59.973 | 55.000 | 16.34 | 6.09 | 42.33 | 5.03 |
123 | 124 | 0.652592 | CCCACTGATTTTAGCGCTCG | 59.347 | 55.000 | 16.34 | 0.00 | 0.00 | 5.03 |
124 | 125 | 0.378610 | GCCCACTGATTTTAGCGCTC | 59.621 | 55.000 | 16.34 | 0.00 | 0.00 | 5.03 |
125 | 126 | 0.035056 | AGCCCACTGATTTTAGCGCT | 60.035 | 50.000 | 17.26 | 17.26 | 0.00 | 5.92 |
126 | 127 | 2.482326 | AGCCCACTGATTTTAGCGC | 58.518 | 52.632 | 0.00 | 0.00 | 0.00 | 5.92 |
136 | 137 | 1.372087 | GCCTTCGATTCAGCCCACTG | 61.372 | 60.000 | 0.00 | 0.00 | 45.95 | 3.66 |
137 | 138 | 1.078143 | GCCTTCGATTCAGCCCACT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
138 | 139 | 0.678048 | AAGCCTTCGATTCAGCCCAC | 60.678 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
139 | 140 | 0.038166 | AAAGCCTTCGATTCAGCCCA | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
140 | 141 | 0.735471 | GAAAGCCTTCGATTCAGCCC | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
141 | 142 | 0.735471 | GGAAAGCCTTCGATTCAGCC | 59.265 | 55.000 | 0.00 | 0.00 | 31.77 | 4.85 |
142 | 143 | 0.375106 | CGGAAAGCCTTCGATTCAGC | 59.625 | 55.000 | 0.00 | 0.00 | 31.77 | 4.26 |
143 | 144 | 1.726853 | ACGGAAAGCCTTCGATTCAG | 58.273 | 50.000 | 0.00 | 0.00 | 31.77 | 3.02 |
144 | 145 | 3.322211 | TTACGGAAAGCCTTCGATTCA | 57.678 | 42.857 | 0.00 | 0.00 | 31.77 | 2.57 |
145 | 146 | 4.673534 | TTTTACGGAAAGCCTTCGATTC | 57.326 | 40.909 | 0.00 | 0.00 | 31.77 | 2.52 |
164 | 165 | 7.116736 | AGATGACCTTCCCGTATATTGTTTTT | 58.883 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
165 | 166 | 6.659824 | AGATGACCTTCCCGTATATTGTTTT | 58.340 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
166 | 167 | 6.248569 | AGATGACCTTCCCGTATATTGTTT | 57.751 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
167 | 168 | 5.888982 | AGATGACCTTCCCGTATATTGTT | 57.111 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
168 | 169 | 5.888982 | AAGATGACCTTCCCGTATATTGT | 57.111 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
169 | 170 | 5.701290 | GGAAAGATGACCTTCCCGTATATTG | 59.299 | 44.000 | 0.00 | 0.00 | 33.02 | 1.90 |
170 | 171 | 5.368523 | TGGAAAGATGACCTTCCCGTATATT | 59.631 | 40.000 | 0.00 | 0.00 | 30.85 | 1.28 |
171 | 172 | 4.905456 | TGGAAAGATGACCTTCCCGTATAT | 59.095 | 41.667 | 0.00 | 0.00 | 30.85 | 0.86 |
182 | 183 | 3.441572 | CACAGGTTCATGGAAAGATGACC | 59.558 | 47.826 | 0.00 | 0.00 | 31.92 | 4.02 |
241 | 242 | 5.363580 | TGGAGAAAAGAAAACATTTCCAGCT | 59.636 | 36.000 | 0.00 | 0.00 | 36.44 | 4.24 |
243 | 244 | 8.667076 | AATTGGAGAAAAGAAAACATTTCCAG | 57.333 | 30.769 | 0.00 | 0.00 | 36.44 | 3.86 |
305 | 306 | 2.540265 | AAGTGTGAGAGCAACTCCAG | 57.460 | 50.000 | 8.13 | 0.00 | 44.34 | 3.86 |
341 | 548 | 4.034510 | AGTGAAGTTTTTCAGAAGAGTGCG | 59.965 | 41.667 | 0.00 | 0.00 | 43.66 | 5.34 |
344 | 551 | 5.819901 | CAGGAGTGAAGTTTTTCAGAAGAGT | 59.180 | 40.000 | 0.00 | 0.00 | 43.66 | 3.24 |
352 | 559 | 3.381590 | AGCAACCAGGAGTGAAGTTTTTC | 59.618 | 43.478 | 0.00 | 0.00 | 0.00 | 2.29 |
357 | 564 | 1.071385 | CAGAGCAACCAGGAGTGAAGT | 59.929 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
376 | 597 | 2.651455 | AGGAGACGGTGAATCGATACA | 58.349 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
454 | 675 | 1.625870 | CACAGCGCGATCTTGTACG | 59.374 | 57.895 | 12.10 | 0.00 | 0.00 | 3.67 |
905 | 1126 | 5.048782 | GTCAATTCATGTGTGCTTTGAGGTA | 60.049 | 40.000 | 0.00 | 0.00 | 31.24 | 3.08 |
917 | 1138 | 3.073678 | TGGACTTCCGTCAATTCATGTG | 58.926 | 45.455 | 0.00 | 0.00 | 42.05 | 3.21 |
918 | 1139 | 3.074412 | GTGGACTTCCGTCAATTCATGT | 58.926 | 45.455 | 0.00 | 0.00 | 42.05 | 3.21 |
921 | 1142 | 2.920724 | TGTGGACTTCCGTCAATTCA | 57.079 | 45.000 | 0.00 | 0.00 | 42.05 | 2.57 |
935 | 1159 | 1.188219 | AGAGAAGCGAGCCTTGTGGA | 61.188 | 55.000 | 0.00 | 0.00 | 32.78 | 4.02 |
936 | 1160 | 1.018226 | CAGAGAAGCGAGCCTTGTGG | 61.018 | 60.000 | 0.00 | 0.00 | 32.78 | 4.17 |
940 | 1164 | 1.214062 | CGTCAGAGAAGCGAGCCTT | 59.786 | 57.895 | 0.00 | 0.00 | 36.19 | 4.35 |
965 | 1189 | 3.650281 | TCCATATTTCCTGCAGCAGAA | 57.350 | 42.857 | 24.90 | 11.52 | 32.44 | 3.02 |
972 | 1196 | 1.683385 | GGGCAGTTCCATATTTCCTGC | 59.317 | 52.381 | 0.00 | 0.00 | 45.93 | 4.85 |
1128 | 1358 | 2.639286 | GTGTTGAACAGCTGCCCG | 59.361 | 61.111 | 15.27 | 0.00 | 0.00 | 6.13 |
1164 | 1394 | 2.367202 | GGCCTTGATCTCCCCGTCA | 61.367 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
1273 | 1503 | 2.232941 | CCAAACAGATGCAGCTGGAATT | 59.767 | 45.455 | 33.28 | 22.03 | 40.20 | 2.17 |
1364 | 1594 | 3.769792 | GTTGTGCACACCTGTGTCAACT | 61.770 | 50.000 | 21.56 | 0.00 | 46.12 | 3.16 |
1384 | 1614 | 8.463930 | TGATCCAGAATTTTCAGTACAAAAGT | 57.536 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
1414 | 1644 | 6.503524 | TGTTTTCAAGCCAAAATAGTCAGTC | 58.496 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1466 | 1699 | 0.106819 | ATGAGGCTCCAGTGCATTCC | 60.107 | 55.000 | 12.86 | 0.00 | 34.04 | 3.01 |
1524 | 1757 | 4.510571 | ACGATGGATGGGTAAAACTGTAC | 58.489 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
1541 | 1774 | 4.083324 | ACTTCAGTAAATGTGCCAACGATG | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 3.84 |
1542 | 1775 | 4.072131 | ACTTCAGTAAATGTGCCAACGAT | 58.928 | 39.130 | 0.00 | 0.00 | 0.00 | 3.73 |
1543 | 1776 | 3.472652 | ACTTCAGTAAATGTGCCAACGA | 58.527 | 40.909 | 0.00 | 0.00 | 0.00 | 3.85 |
1544 | 1777 | 3.896648 | ACTTCAGTAAATGTGCCAACG | 57.103 | 42.857 | 0.00 | 0.00 | 0.00 | 4.10 |
1548 | 1781 | 4.793216 | CGCATAAACTTCAGTAAATGTGCC | 59.207 | 41.667 | 0.00 | 0.00 | 29.95 | 5.01 |
1724 | 1962 | 6.514541 | CTGCAACAGACATTCAAGAACTGAAT | 60.515 | 38.462 | 0.00 | 0.00 | 43.36 | 2.57 |
1731 | 1969 | 4.702831 | TGTACTGCAACAGACATTCAAGA | 58.297 | 39.130 | 0.78 | 0.00 | 35.18 | 3.02 |
1737 | 1975 | 5.532406 | ACTGAATTTGTACTGCAACAGACAT | 59.468 | 36.000 | 0.78 | 0.00 | 36.72 | 3.06 |
1738 | 1976 | 4.881273 | ACTGAATTTGTACTGCAACAGACA | 59.119 | 37.500 | 0.78 | 0.00 | 36.72 | 3.41 |
1739 | 1977 | 5.237344 | AGACTGAATTTGTACTGCAACAGAC | 59.763 | 40.000 | 0.78 | 9.22 | 36.72 | 3.51 |
1740 | 1978 | 5.368145 | AGACTGAATTTGTACTGCAACAGA | 58.632 | 37.500 | 0.78 | 0.00 | 36.72 | 3.41 |
1741 | 1979 | 5.468072 | AGAGACTGAATTTGTACTGCAACAG | 59.532 | 40.000 | 0.00 | 0.00 | 36.72 | 3.16 |
1742 | 1980 | 5.368145 | AGAGACTGAATTTGTACTGCAACA | 58.632 | 37.500 | 0.00 | 0.00 | 36.72 | 3.33 |
1744 | 1982 | 6.291377 | AGAAGAGACTGAATTTGTACTGCAA | 58.709 | 36.000 | 0.00 | 0.00 | 34.87 | 4.08 |
1745 | 1983 | 5.858381 | AGAAGAGACTGAATTTGTACTGCA | 58.142 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
1746 | 1984 | 5.928839 | TGAGAAGAGACTGAATTTGTACTGC | 59.071 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1752 | 2009 | 6.132056 | CACGTTTGAGAAGAGACTGAATTTG | 58.868 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
1757 | 2014 | 2.100749 | TGCACGTTTGAGAAGAGACTGA | 59.899 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
1763 | 2020 | 1.581934 | CACCTGCACGTTTGAGAAGA | 58.418 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1799 | 2056 | 2.751259 | GCTCATGTTGAATGCAGAAGGA | 59.249 | 45.455 | 0.00 | 0.00 | 0.00 | 3.36 |
1850 | 2107 | 7.127955 | AGAGTGATATAATGGAACCTGGACTTT | 59.872 | 37.037 | 0.00 | 0.00 | 0.00 | 2.66 |
1863 | 2120 | 8.637099 | TGGAGAAGACAGAAGAGTGATATAATG | 58.363 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
1864 | 2121 | 8.774546 | TGGAGAAGACAGAAGAGTGATATAAT | 57.225 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
1868 | 2125 | 6.013379 | AGTTGGAGAAGACAGAAGAGTGATA | 58.987 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1869 | 2126 | 4.837860 | AGTTGGAGAAGACAGAAGAGTGAT | 59.162 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
1870 | 2127 | 4.038522 | CAGTTGGAGAAGACAGAAGAGTGA | 59.961 | 45.833 | 0.00 | 0.00 | 0.00 | 3.41 |
1871 | 2128 | 4.202202 | ACAGTTGGAGAAGACAGAAGAGTG | 60.202 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
1872 | 2129 | 3.964031 | ACAGTTGGAGAAGACAGAAGAGT | 59.036 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
1873 | 2130 | 4.599047 | ACAGTTGGAGAAGACAGAAGAG | 57.401 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
1874 | 2131 | 4.651503 | AGAACAGTTGGAGAAGACAGAAGA | 59.348 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
1875 | 2132 | 4.954875 | AGAACAGTTGGAGAAGACAGAAG | 58.045 | 43.478 | 0.00 | 0.00 | 0.00 | 2.85 |
1876 | 2133 | 6.267699 | TGATAGAACAGTTGGAGAAGACAGAA | 59.732 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
1880 | 2137 | 6.031751 | AGTGATAGAACAGTTGGAGAAGAC | 57.968 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
1929 | 2186 | 9.676861 | GTAAAAAGGGGAGAATTAGCTAACTAA | 57.323 | 33.333 | 8.70 | 0.00 | 42.47 | 2.24 |
1948 | 2211 | 1.202405 | GCGGATGCATGGGGTAAAAAG | 60.202 | 52.381 | 2.46 | 0.00 | 42.15 | 2.27 |
1966 | 2236 | 1.669158 | CTGAACGAGCGAAGTGAGCG | 61.669 | 60.000 | 0.00 | 0.00 | 40.04 | 5.03 |
1976 | 2246 | 1.301716 | TCAACAGCCCTGAACGAGC | 60.302 | 57.895 | 1.69 | 0.00 | 0.00 | 5.03 |
1981 | 2251 | 2.507484 | CTGATTGTCAACAGCCCTGAA | 58.493 | 47.619 | 1.69 | 0.00 | 0.00 | 3.02 |
2013 | 2283 | 8.737175 | CAGGTCACAGTTAGTAGTAGTAATGAA | 58.263 | 37.037 | 0.81 | 0.00 | 0.00 | 2.57 |
2015 | 2285 | 6.973474 | GCAGGTCACAGTTAGTAGTAGTAATG | 59.027 | 42.308 | 0.81 | 4.01 | 0.00 | 1.90 |
2067 | 2354 | 3.931578 | ACTGAAGCCAAGACAGATACAC | 58.068 | 45.455 | 0.00 | 0.00 | 35.85 | 2.90 |
2072 | 2359 | 3.206150 | GAACAACTGAAGCCAAGACAGA | 58.794 | 45.455 | 0.00 | 0.00 | 35.85 | 3.41 |
2082 | 2395 | 0.232303 | GTCGCCACGAACAACTGAAG | 59.768 | 55.000 | 0.00 | 0.00 | 37.72 | 3.02 |
2088 | 2401 | 2.970324 | GCAGGTCGCCACGAACAA | 60.970 | 61.111 | 7.86 | 0.00 | 46.95 | 2.83 |
2146 | 2459 | 2.677875 | GGCTTGAGTTGCCCCAGG | 60.678 | 66.667 | 0.00 | 0.00 | 44.32 | 4.45 |
2182 | 2495 | 1.131218 | CTTCAGTGATGCGTGCGTG | 59.869 | 57.895 | 0.00 | 0.00 | 0.00 | 5.34 |
2248 | 2561 | 2.231235 | CCAACATGGTTAGCTTCAACCC | 59.769 | 50.000 | 14.53 | 0.00 | 46.29 | 4.11 |
2376 | 2689 | 9.722056 | CTGCAAAAAGATATAATTGTGTACCTC | 57.278 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
2389 | 2702 | 6.369615 | GCACAAATTCCACTGCAAAAAGATAT | 59.630 | 34.615 | 0.00 | 0.00 | 0.00 | 1.63 |
2390 | 2703 | 5.695816 | GCACAAATTCCACTGCAAAAAGATA | 59.304 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2391 | 2704 | 4.512571 | GCACAAATTCCACTGCAAAAAGAT | 59.487 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
2392 | 2705 | 3.870419 | GCACAAATTCCACTGCAAAAAGA | 59.130 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
2393 | 2706 | 3.872771 | AGCACAAATTCCACTGCAAAAAG | 59.127 | 39.130 | 0.00 | 0.00 | 31.71 | 2.27 |
2397 | 2710 | 2.483363 | CCAAGCACAAATTCCACTGCAA | 60.483 | 45.455 | 0.00 | 0.00 | 31.71 | 4.08 |
2398 | 2711 | 1.068895 | CCAAGCACAAATTCCACTGCA | 59.931 | 47.619 | 0.00 | 0.00 | 31.71 | 4.41 |
2399 | 2712 | 1.606224 | CCCAAGCACAAATTCCACTGC | 60.606 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
2400 | 2713 | 1.962807 | TCCCAAGCACAAATTCCACTG | 59.037 | 47.619 | 0.00 | 0.00 | 0.00 | 3.66 |
2401 | 2714 | 2.380064 | TCCCAAGCACAAATTCCACT | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2402 | 2715 | 3.244181 | ACAATCCCAAGCACAAATTCCAC | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
2449 | 2767 | 1.893062 | GCCCTGCACAGATTTTCCC | 59.107 | 57.895 | 0.00 | 0.00 | 0.00 | 3.97 |
2532 | 2852 | 0.732880 | GCAGCTAGCTCGAACGTTCA | 60.733 | 55.000 | 26.71 | 13.46 | 41.15 | 3.18 |
2533 | 2853 | 1.734359 | CGCAGCTAGCTCGAACGTTC | 61.734 | 60.000 | 23.57 | 18.47 | 42.61 | 3.95 |
2534 | 2854 | 1.801913 | CGCAGCTAGCTCGAACGTT | 60.802 | 57.895 | 23.57 | 0.00 | 42.61 | 3.99 |
2535 | 2855 | 2.202492 | CGCAGCTAGCTCGAACGT | 60.202 | 61.111 | 23.57 | 0.00 | 42.61 | 3.99 |
2576 | 2896 | 1.610102 | GCCTTCTTCAGCTCTCTGCAA | 60.610 | 52.381 | 0.00 | 0.00 | 45.94 | 4.08 |
2633 | 2953 | 1.671379 | GCAAACCCCGTCCTCTGTC | 60.671 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
2665 | 2993 | 0.813184 | CGGAATCTTTGCATGCCACT | 59.187 | 50.000 | 16.68 | 0.00 | 0.00 | 4.00 |
2666 | 2994 | 0.179129 | CCGGAATCTTTGCATGCCAC | 60.179 | 55.000 | 16.68 | 0.00 | 0.00 | 5.01 |
2667 | 2995 | 0.323269 | TCCGGAATCTTTGCATGCCA | 60.323 | 50.000 | 16.68 | 0.00 | 0.00 | 4.92 |
2683 | 3011 | 5.220381 | GGTACATATCGTATATGGCATCCG | 58.780 | 45.833 | 1.65 | 5.48 | 31.20 | 4.18 |
2723 | 3137 | 1.972075 | TGGAGTTCCCATGTGTTCGTA | 59.028 | 47.619 | 0.00 | 0.00 | 40.82 | 3.43 |
2724 | 3138 | 0.762418 | TGGAGTTCCCATGTGTTCGT | 59.238 | 50.000 | 0.00 | 0.00 | 40.82 | 3.85 |
2733 | 3147 | 6.267471 | GGCATCATAAATATTTGGAGTTCCCA | 59.733 | 38.462 | 11.05 | 0.00 | 44.93 | 4.37 |
2757 | 3172 | 7.590322 | GCAACTATCGGTACATATCGTATATGG | 59.410 | 40.741 | 14.97 | 3.10 | 31.20 | 2.74 |
2760 | 3175 | 7.335171 | ACTGCAACTATCGGTACATATCGTATA | 59.665 | 37.037 | 0.00 | 0.00 | 31.20 | 1.47 |
2761 | 3176 | 6.150641 | ACTGCAACTATCGGTACATATCGTAT | 59.849 | 38.462 | 0.00 | 0.00 | 31.20 | 3.06 |
2763 | 3178 | 4.277672 | ACTGCAACTATCGGTACATATCGT | 59.722 | 41.667 | 0.00 | 0.00 | 0.00 | 3.73 |
2764 | 3179 | 4.795268 | ACTGCAACTATCGGTACATATCG | 58.205 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
2765 | 3180 | 5.800941 | GCTACTGCAACTATCGGTACATATC | 59.199 | 44.000 | 0.00 | 0.00 | 39.41 | 1.63 |
2766 | 3181 | 5.710984 | GCTACTGCAACTATCGGTACATAT | 58.289 | 41.667 | 0.00 | 0.00 | 39.41 | 1.78 |
2768 | 3183 | 3.978687 | GCTACTGCAACTATCGGTACAT | 58.021 | 45.455 | 0.00 | 0.00 | 39.41 | 2.29 |
2769 | 3184 | 3.431922 | GCTACTGCAACTATCGGTACA | 57.568 | 47.619 | 0.00 | 0.00 | 39.41 | 2.90 |
2792 | 3817 | 1.313091 | CGTCGAGGATGAGGGTGACA | 61.313 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2826 | 3851 | 5.164620 | AGGTGATGACATGTTGTGTGATA | 57.835 | 39.130 | 0.00 | 0.00 | 42.36 | 2.15 |
2851 | 3876 | 1.075601 | TGGGATCAGGAAACCTTGCT | 58.924 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2852 | 3877 | 2.149973 | ATGGGATCAGGAAACCTTGC | 57.850 | 50.000 | 0.00 | 0.00 | 0.00 | 4.01 |
2863 | 3888 | 3.737559 | ACCTGCTAAACAATGGGATCA | 57.262 | 42.857 | 0.00 | 0.00 | 0.00 | 2.92 |
2902 | 3928 | 5.768333 | GCATTTGAAGTTTTGTATGCCTC | 57.232 | 39.130 | 0.00 | 0.00 | 33.96 | 4.70 |
2907 | 3933 | 5.106157 | CGAGAGGGCATTTGAAGTTTTGTAT | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2979 | 4005 | 1.146774 | TCTCAAACCCAATTGGCCAGA | 59.853 | 47.619 | 19.75 | 12.05 | 37.83 | 3.86 |
3027 | 4055 | 7.094291 | GCTACTATCTGGTTGACGGTATCTATT | 60.094 | 40.741 | 0.00 | 0.00 | 0.00 | 1.73 |
3098 | 4127 | 2.876079 | GCGGGAGTGACTGAAGGAAAAT | 60.876 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
3153 | 4203 | 1.269448 | TGGATTTGGCACGCTTTCTTC | 59.731 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
3194 | 4247 | 8.413309 | AAGAACTCCATCATCATTCTTGAAAA | 57.587 | 30.769 | 0.00 | 0.00 | 38.02 | 2.29 |
3195 | 4248 | 9.519191 | TTAAGAACTCCATCATCATTCTTGAAA | 57.481 | 29.630 | 7.59 | 0.00 | 39.37 | 2.69 |
3214 | 4267 | 7.308830 | GGGCAATATCAGGATCATGTTAAGAAC | 60.309 | 40.741 | 7.33 | 0.00 | 0.00 | 3.01 |
3248 | 4302 | 5.395324 | GGAGATGGAATAACTGTTCGAAGGA | 60.395 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3269 | 4326 | 1.469703 | TCTTGATTGCGTGCAATGGAG | 59.530 | 47.619 | 23.55 | 18.70 | 45.50 | 3.86 |
3274 | 4331 | 1.739466 | GGATCTCTTGATTGCGTGCAA | 59.261 | 47.619 | 10.02 | 10.02 | 40.47 | 4.08 |
3409 | 4466 | 1.825341 | CGGAGATGCCATGGTCAGA | 59.175 | 57.895 | 14.67 | 0.00 | 35.94 | 3.27 |
3440 | 4497 | 2.019984 | GGACGAGTACCTACGGATGTT | 58.980 | 52.381 | 8.95 | 0.00 | 0.00 | 2.71 |
3479 | 4537 | 1.802960 | CACTCCGGATGCTTGCATATC | 59.197 | 52.381 | 3.57 | 3.63 | 0.00 | 1.63 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.