Multiple sequence alignment - TraesCS7A01G166000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G166000 chr7A 100.000 2484 0 0 1 2484 121612587 121610104 0.000000e+00 4588.0
1 TraesCS7A01G166000 chr7A 88.655 996 43 27 762 1728 121563277 121562323 0.000000e+00 1149.0
2 TraesCS7A01G166000 chr7A 87.387 666 48 15 1014 1651 121558536 121557879 0.000000e+00 732.0
3 TraesCS7A01G166000 chr7A 94.008 484 8 9 1 465 68342140 68342621 0.000000e+00 713.0
4 TraesCS7A01G166000 chr7A 93.196 485 9 5 1 465 733249893 733250373 0.000000e+00 691.0
5 TraesCS7A01G166000 chr7A 86.017 472 49 10 1 459 471553243 471553710 7.980000e-135 490.0
6 TraesCS7A01G166000 chr7A 80.987 689 57 28 887 1524 121859137 121858472 1.730000e-131 479.0
7 TraesCS7A01G166000 chr7A 87.006 177 17 1 762 938 121558737 121558567 7.010000e-46 195.0
8 TraesCS7A01G166000 chr7B 89.400 1000 41 16 762 1728 77570055 77569088 0.000000e+00 1199.0
9 TraesCS7A01G166000 chr7B 80.783 869 83 46 696 1532 77818830 77818014 9.830000e-169 603.0
10 TraesCS7A01G166000 chr7D 89.663 919 37 17 843 1728 117270758 117269865 0.000000e+00 1118.0
11 TraesCS7A01G166000 chr7D 85.503 676 52 24 879 1532 117472687 117472036 0.000000e+00 664.0
12 TraesCS7A01G166000 chr6D 92.339 744 41 5 1742 2476 411675380 411674644 0.000000e+00 1044.0
13 TraesCS7A01G166000 chr4A 97.817 458 10 0 1 458 47765763 47766220 0.000000e+00 791.0
14 TraesCS7A01G166000 chr2A 97.408 463 10 2 1 462 74060226 74060687 0.000000e+00 787.0
15 TraesCS7A01G166000 chr2A 93.305 478 12 3 1 459 183893343 183892867 0.000000e+00 688.0
16 TraesCS7A01G166000 chr2A 92.308 494 12 6 1 474 535597852 535598339 0.000000e+00 678.0
17 TraesCS7A01G166000 chr2A 92.902 479 13 11 1 459 7510720 7511197 0.000000e+00 676.0
18 TraesCS7A01G166000 chr2A 81.410 312 35 15 2148 2441 52677266 52676960 1.490000e-57 233.0
19 TraesCS7A01G166000 chr5A 94.292 473 23 4 1 471 603796856 603797326 0.000000e+00 721.0
20 TraesCS7A01G166000 chr5A 90.349 373 32 4 91 462 554642278 554642647 1.030000e-133 486.0
21 TraesCS7A01G166000 chr5A 86.607 112 14 1 580 691 108861637 108861747 3.350000e-24 122.0
22 TraesCS7A01G166000 chr5A 78.261 161 29 4 535 690 624472953 624473112 5.650000e-17 99.0
23 TraesCS7A01G166000 chr3A 93.750 480 11 2 1 461 58845326 58845805 0.000000e+00 702.0
24 TraesCS7A01G166000 chr3A 83.333 150 25 0 1292 1441 57007797 57007946 3.330000e-29 139.0
25 TraesCS7A01G166000 chr4D 80.891 696 94 23 1729 2412 64371706 64372374 1.700000e-141 512.0
26 TraesCS7A01G166000 chr5D 79.641 167 21 3 528 693 499852743 499852589 9.390000e-20 108.0
27 TraesCS7A01G166000 chr4B 88.732 71 8 0 623 693 102408730 102408800 1.220000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G166000 chr7A 121610104 121612587 2483 True 4588 4588 100.000000 1 2484 1 chr7A.!!$R1 2483
1 TraesCS7A01G166000 chr7A 121557879 121563277 5398 True 692 1149 87.682667 762 1728 3 chr7A.!!$R3 966
2 TraesCS7A01G166000 chr7A 121858472 121859137 665 True 479 479 80.987000 887 1524 1 chr7A.!!$R2 637
3 TraesCS7A01G166000 chr7B 77569088 77570055 967 True 1199 1199 89.400000 762 1728 1 chr7B.!!$R1 966
4 TraesCS7A01G166000 chr7B 77818014 77818830 816 True 603 603 80.783000 696 1532 1 chr7B.!!$R2 836
5 TraesCS7A01G166000 chr7D 117269865 117270758 893 True 1118 1118 89.663000 843 1728 1 chr7D.!!$R1 885
6 TraesCS7A01G166000 chr7D 117472036 117472687 651 True 664 664 85.503000 879 1532 1 chr7D.!!$R2 653
7 TraesCS7A01G166000 chr6D 411674644 411675380 736 True 1044 1044 92.339000 1742 2476 1 chr6D.!!$R1 734
8 TraesCS7A01G166000 chr4D 64371706 64372374 668 False 512 512 80.891000 1729 2412 1 chr4D.!!$F1 683

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 759 0.030235 TGACAGTGAGTTCGTCGGTG 59.97 55.0 0.0 0.0 32.17 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2009 3717 0.108329 AAGCCTACATGTTCGTCGGG 60.108 55.0 2.3 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.925268 TTTTTCTAATCCGCGTAAAAGATATTC 57.075 29.630 4.92 0.00 0.00 1.75
32 33 8.651391 TTTCTAATCCGCGTAAAAGATATTCA 57.349 30.769 4.92 0.00 0.00 2.57
33 34 8.651391 TTCTAATCCGCGTAAAAGATATTCAA 57.349 30.769 4.92 0.00 0.00 2.69
34 35 8.651391 TCTAATCCGCGTAAAAGATATTCAAA 57.349 30.769 4.92 0.00 0.00 2.69
35 36 9.268268 TCTAATCCGCGTAAAAGATATTCAAAT 57.732 29.630 4.92 0.00 0.00 2.32
36 37 9.530129 CTAATCCGCGTAAAAGATATTCAAATC 57.470 33.333 4.92 0.00 0.00 2.17
37 38 6.295039 TCCGCGTAAAAGATATTCAAATCC 57.705 37.500 4.92 0.00 0.00 3.01
38 39 5.050634 TCCGCGTAAAAGATATTCAAATCCG 60.051 40.000 4.92 0.00 0.00 4.18
39 40 4.607235 CGCGTAAAAGATATTCAAATCCGC 59.393 41.667 0.00 0.00 32.06 5.54
40 41 5.507077 GCGTAAAAGATATTCAAATCCGCA 58.493 37.500 0.00 0.00 34.10 5.69
41 42 6.142817 GCGTAAAAGATATTCAAATCCGCAT 58.857 36.000 0.00 0.00 34.10 4.73
42 43 7.295201 GCGTAAAAGATATTCAAATCCGCATA 58.705 34.615 0.00 0.00 34.10 3.14
43 44 7.268447 GCGTAAAAGATATTCAAATCCGCATAC 59.732 37.037 0.00 0.00 34.10 2.39
44 45 7.474332 CGTAAAAGATATTCAAATCCGCATACG 59.526 37.037 0.00 0.00 39.67 3.06
45 46 6.861065 AAAGATATTCAAATCCGCATACGT 57.139 33.333 0.00 0.00 37.70 3.57
46 47 6.861065 AAGATATTCAAATCCGCATACGTT 57.139 33.333 0.00 0.00 37.70 3.99
47 48 6.861065 AGATATTCAAATCCGCATACGTTT 57.139 33.333 0.00 0.00 37.70 3.60
48 49 7.259290 AGATATTCAAATCCGCATACGTTTT 57.741 32.000 0.00 0.00 37.70 2.43
49 50 7.352739 AGATATTCAAATCCGCATACGTTTTC 58.647 34.615 0.00 0.00 37.70 2.29
50 51 4.750952 TTCAAATCCGCATACGTTTTCA 57.249 36.364 0.00 0.00 37.70 2.69
51 52 4.750952 TCAAATCCGCATACGTTTTCAA 57.249 36.364 0.00 0.00 37.70 2.69
52 53 5.303747 TCAAATCCGCATACGTTTTCAAT 57.696 34.783 0.00 0.00 37.70 2.57
53 54 5.704888 TCAAATCCGCATACGTTTTCAATT 58.295 33.333 0.00 0.00 37.70 2.32
54 55 6.153067 TCAAATCCGCATACGTTTTCAATTT 58.847 32.000 0.00 0.00 37.70 1.82
55 56 6.306837 TCAAATCCGCATACGTTTTCAATTTC 59.693 34.615 0.00 0.00 37.70 2.17
56 57 4.750952 TCCGCATACGTTTTCAATTTCA 57.249 36.364 0.00 0.00 37.70 2.69
57 58 4.468643 TCCGCATACGTTTTCAATTTCAC 58.531 39.130 0.00 0.00 37.70 3.18
58 59 4.023963 TCCGCATACGTTTTCAATTTCACA 60.024 37.500 0.00 0.00 37.70 3.58
59 60 4.856487 CCGCATACGTTTTCAATTTCACAT 59.144 37.500 0.00 0.00 37.70 3.21
60 61 6.024664 CCGCATACGTTTTCAATTTCACATA 58.975 36.000 0.00 0.00 37.70 2.29
61 62 6.524933 CCGCATACGTTTTCAATTTCACATAA 59.475 34.615 0.00 0.00 37.70 1.90
62 63 7.061210 CCGCATACGTTTTCAATTTCACATAAA 59.939 33.333 0.00 0.00 37.70 1.40
63 64 8.420945 CGCATACGTTTTCAATTTCACATAAAA 58.579 29.630 0.00 0.00 33.53 1.52
111 112 9.832445 ACGTGAATAGGAATAAGTATGTCAATT 57.168 29.630 0.00 0.00 0.00 2.32
159 160 7.476540 AAAACCACAGGAACTTTAAAGAAGT 57.523 32.000 21.92 6.39 34.60 3.01
160 161 8.584063 AAAACCACAGGAACTTTAAAGAAGTA 57.416 30.769 21.92 0.00 34.60 2.24
161 162 7.563888 AACCACAGGAACTTTAAAGAAGTAC 57.436 36.000 21.92 7.24 34.60 2.73
162 163 5.756833 ACCACAGGAACTTTAAAGAAGTACG 59.243 40.000 21.92 7.75 34.60 3.67
163 164 5.756833 CCACAGGAACTTTAAAGAAGTACGT 59.243 40.000 21.92 8.33 34.60 3.57
164 165 6.292703 CCACAGGAACTTTAAAGAAGTACGTG 60.293 42.308 21.92 17.67 34.60 4.49
165 166 5.756833 ACAGGAACTTTAAAGAAGTACGTGG 59.243 40.000 21.92 4.74 34.60 4.94
166 167 5.987347 CAGGAACTTTAAAGAAGTACGTGGA 59.013 40.000 21.92 0.00 34.60 4.02
167 168 6.649557 CAGGAACTTTAAAGAAGTACGTGGAT 59.350 38.462 21.92 0.00 34.60 3.41
168 169 7.172703 CAGGAACTTTAAAGAAGTACGTGGATT 59.827 37.037 21.92 0.83 34.60 3.01
169 170 7.718314 AGGAACTTTAAAGAAGTACGTGGATTT 59.282 33.333 21.92 0.63 27.25 2.17
170 171 8.347771 GGAACTTTAAAGAAGTACGTGGATTTT 58.652 33.333 21.92 0.20 0.00 1.82
200 201 9.797556 AAAAGTATGTGAACTTGGAAAAAGTAC 57.202 29.630 0.00 0.00 39.62 2.73
201 202 8.514330 AAGTATGTGAACTTGGAAAAAGTACA 57.486 30.769 0.00 0.00 38.28 2.90
202 203 7.927048 AGTATGTGAACTTGGAAAAAGTACAC 58.073 34.615 0.00 0.00 0.00 2.90
203 204 6.767524 ATGTGAACTTGGAAAAAGTACACA 57.232 33.333 0.00 0.00 39.40 3.72
204 205 6.576662 TGTGAACTTGGAAAAAGTACACAA 57.423 33.333 0.00 0.00 33.82 3.33
205 206 6.982852 TGTGAACTTGGAAAAAGTACACAAA 58.017 32.000 0.00 0.00 33.82 2.83
206 207 7.607250 TGTGAACTTGGAAAAAGTACACAAAT 58.393 30.769 0.00 0.00 33.82 2.32
207 208 8.091449 TGTGAACTTGGAAAAAGTACACAAATT 58.909 29.630 0.00 0.00 33.82 1.82
208 209 8.931775 GTGAACTTGGAAAAAGTACACAAATTT 58.068 29.630 0.00 0.00 0.00 1.82
209 210 9.495572 TGAACTTGGAAAAAGTACACAAATTTT 57.504 25.926 0.00 0.00 0.00 1.82
260 261 6.757026 ACCCGAATTTGAAAACATTAAACG 57.243 33.333 0.00 0.00 0.00 3.60
261 262 5.692654 ACCCGAATTTGAAAACATTAAACGG 59.307 36.000 0.00 0.00 36.09 4.44
262 263 5.921408 CCCGAATTTGAAAACATTAAACGGA 59.079 36.000 0.00 0.00 38.09 4.69
263 264 6.129035 CCCGAATTTGAAAACATTAAACGGAC 60.129 38.462 0.00 0.00 38.09 4.79
264 265 6.639279 CCGAATTTGAAAACATTAAACGGACT 59.361 34.615 0.00 0.00 38.09 3.85
265 266 7.168469 CCGAATTTGAAAACATTAAACGGACTT 59.832 33.333 0.00 0.00 38.09 3.01
266 267 7.995998 CGAATTTGAAAACATTAAACGGACTTG 59.004 33.333 0.00 0.00 0.00 3.16
267 268 7.707774 ATTTGAAAACATTAAACGGACTTGG 57.292 32.000 0.00 0.00 0.00 3.61
268 269 6.452494 TTGAAAACATTAAACGGACTTGGA 57.548 33.333 0.00 0.00 0.00 3.53
269 270 6.452494 TGAAAACATTAAACGGACTTGGAA 57.548 33.333 0.00 0.00 0.00 3.53
270 271 6.864342 TGAAAACATTAAACGGACTTGGAAA 58.136 32.000 0.00 0.00 0.00 3.13
271 272 7.321153 TGAAAACATTAAACGGACTTGGAAAA 58.679 30.769 0.00 0.00 0.00 2.29
272 273 7.489757 TGAAAACATTAAACGGACTTGGAAAAG 59.510 33.333 0.00 0.00 0.00 2.27
273 274 5.447624 ACATTAAACGGACTTGGAAAAGG 57.552 39.130 0.00 0.00 0.00 3.11
274 275 4.891168 ACATTAAACGGACTTGGAAAAGGT 59.109 37.500 0.00 0.00 0.00 3.50
275 276 6.063404 ACATTAAACGGACTTGGAAAAGGTA 58.937 36.000 0.00 0.00 0.00 3.08
276 277 6.717997 ACATTAAACGGACTTGGAAAAGGTAT 59.282 34.615 0.00 0.00 0.00 2.73
277 278 7.231925 ACATTAAACGGACTTGGAAAAGGTATT 59.768 33.333 0.00 0.00 0.00 1.89
278 279 5.700722 AAACGGACTTGGAAAAGGTATTC 57.299 39.130 0.00 0.00 0.00 1.75
279 280 3.332034 ACGGACTTGGAAAAGGTATTCG 58.668 45.455 0.00 0.00 0.00 3.34
280 281 3.007182 ACGGACTTGGAAAAGGTATTCGA 59.993 43.478 0.00 0.00 0.00 3.71
281 282 3.998341 CGGACTTGGAAAAGGTATTCGAA 59.002 43.478 0.00 0.00 0.00 3.71
282 283 4.634443 CGGACTTGGAAAAGGTATTCGAAT 59.366 41.667 16.15 16.15 0.00 3.34
283 284 5.123344 CGGACTTGGAAAAGGTATTCGAATT 59.877 40.000 17.19 0.00 0.00 2.17
284 285 6.349033 CGGACTTGGAAAAGGTATTCGAATTT 60.349 38.462 17.19 4.56 0.00 1.82
285 286 6.806739 GGACTTGGAAAAGGTATTCGAATTTG 59.193 38.462 17.19 0.00 0.00 2.32
286 287 7.308951 GGACTTGGAAAAGGTATTCGAATTTGA 60.309 37.037 17.19 0.00 0.00 2.69
287 288 7.593825 ACTTGGAAAAGGTATTCGAATTTGAG 58.406 34.615 17.19 5.40 0.00 3.02
288 289 7.230712 ACTTGGAAAAGGTATTCGAATTTGAGT 59.769 33.333 17.19 5.95 0.00 3.41
289 290 7.141100 TGGAAAAGGTATTCGAATTTGAGTC 57.859 36.000 17.19 7.31 0.00 3.36
290 291 6.128391 TGGAAAAGGTATTCGAATTTGAGTCG 60.128 38.462 17.19 0.00 39.88 4.18
291 292 5.796350 AAAGGTATTCGAATTTGAGTCGG 57.204 39.130 17.19 0.00 39.01 4.79
292 293 3.195661 AGGTATTCGAATTTGAGTCGGC 58.804 45.455 17.19 0.00 39.01 5.54
293 294 2.933906 GGTATTCGAATTTGAGTCGGCA 59.066 45.455 17.19 0.00 39.01 5.69
294 295 3.242316 GGTATTCGAATTTGAGTCGGCAC 60.242 47.826 17.19 3.94 39.01 5.01
312 313 3.450507 GGTCAAAACCGGGTTGGG 58.549 61.111 14.22 8.88 44.64 4.12
313 314 1.152715 GGTCAAAACCGGGTTGGGA 60.153 57.895 14.22 11.18 44.64 4.37
314 315 1.457823 GGTCAAAACCGGGTTGGGAC 61.458 60.000 24.89 24.89 44.64 4.46
315 316 0.752376 GTCAAAACCGGGTTGGGACA 60.752 55.000 26.60 0.00 44.64 4.02
316 317 0.466555 TCAAAACCGGGTTGGGACAG 60.467 55.000 14.22 0.59 44.64 3.51
317 318 1.830847 AAAACCGGGTTGGGACAGC 60.831 57.895 14.22 0.00 44.64 4.40
318 319 2.575455 AAAACCGGGTTGGGACAGCA 62.575 55.000 14.22 0.00 42.95 4.41
319 320 3.785122 AACCGGGTTGGGACAGCAC 62.785 63.158 12.53 0.00 42.95 4.40
321 322 4.263572 CGGGTTGGGACAGCACCA 62.264 66.667 0.00 0.00 40.94 4.17
322 323 2.197324 GGGTTGGGACAGCACCAA 59.803 61.111 0.00 0.00 40.79 3.67
326 327 2.510664 TTGGGACAGCACCAAAACC 58.489 52.632 0.00 0.00 44.52 3.27
327 328 1.388065 TTGGGACAGCACCAAAACCG 61.388 55.000 0.00 0.00 44.52 4.44
328 329 2.561037 GGGACAGCACCAAAACCGG 61.561 63.158 0.00 0.00 0.00 5.28
329 330 1.826487 GGACAGCACCAAAACCGGT 60.826 57.895 0.00 0.00 41.07 5.28
330 331 1.652563 GACAGCACCAAAACCGGTC 59.347 57.895 8.04 0.00 37.07 4.79
331 332 1.077357 ACAGCACCAAAACCGGTCA 60.077 52.632 8.04 0.00 37.07 4.02
332 333 0.681564 ACAGCACCAAAACCGGTCAA 60.682 50.000 8.04 0.00 37.07 3.18
333 334 0.457851 CAGCACCAAAACCGGTCAAA 59.542 50.000 8.04 0.00 37.07 2.69
334 335 1.134965 CAGCACCAAAACCGGTCAAAA 60.135 47.619 8.04 0.00 37.07 2.44
335 336 1.134936 AGCACCAAAACCGGTCAAAAC 60.135 47.619 8.04 0.00 37.07 2.43
336 337 1.929230 CACCAAAACCGGTCAAAACC 58.071 50.000 8.04 0.00 42.66 3.27
347 348 2.234300 GTCAAAACCGTGACCAGAGA 57.766 50.000 0.00 0.00 41.79 3.10
348 349 2.767505 GTCAAAACCGTGACCAGAGAT 58.232 47.619 0.00 0.00 41.79 2.75
349 350 2.480419 GTCAAAACCGTGACCAGAGATG 59.520 50.000 0.00 0.00 41.79 2.90
350 351 2.367241 TCAAAACCGTGACCAGAGATGA 59.633 45.455 0.00 0.00 0.00 2.92
351 352 3.138304 CAAAACCGTGACCAGAGATGAA 58.862 45.455 0.00 0.00 0.00 2.57
352 353 3.703001 AAACCGTGACCAGAGATGAAT 57.297 42.857 0.00 0.00 0.00 2.57
353 354 2.969628 ACCGTGACCAGAGATGAATC 57.030 50.000 0.00 0.00 0.00 2.52
354 355 2.461695 ACCGTGACCAGAGATGAATCT 58.538 47.619 0.00 0.00 40.50 2.40
355 356 2.834549 ACCGTGACCAGAGATGAATCTT 59.165 45.455 0.00 0.00 37.25 2.40
356 357 3.193263 CCGTGACCAGAGATGAATCTTG 58.807 50.000 0.00 0.00 37.25 3.02
357 358 3.193263 CGTGACCAGAGATGAATCTTGG 58.807 50.000 14.69 14.69 39.18 3.61
358 359 2.941720 GTGACCAGAGATGAATCTTGGC 59.058 50.000 15.57 11.39 37.99 4.52
359 360 2.092753 TGACCAGAGATGAATCTTGGCC 60.093 50.000 15.57 0.00 37.99 5.36
360 361 1.134280 ACCAGAGATGAATCTTGGCCG 60.134 52.381 15.57 0.00 37.99 6.13
361 362 1.590932 CAGAGATGAATCTTGGCCGG 58.409 55.000 0.00 0.00 37.25 6.13
362 363 1.134280 CAGAGATGAATCTTGGCCGGT 60.134 52.381 1.90 0.00 37.25 5.28
363 364 1.561542 AGAGATGAATCTTGGCCGGTT 59.438 47.619 1.90 0.00 37.25 4.44
364 365 2.025887 AGAGATGAATCTTGGCCGGTTT 60.026 45.455 1.90 0.00 37.25 3.27
365 366 2.356069 GAGATGAATCTTGGCCGGTTTC 59.644 50.000 1.90 5.40 37.25 2.78
366 367 2.091541 GATGAATCTTGGCCGGTTTCA 58.908 47.619 18.12 18.12 0.00 2.69
367 368 1.533625 TGAATCTTGGCCGGTTTCAG 58.466 50.000 1.90 0.00 0.00 3.02
368 369 1.202879 TGAATCTTGGCCGGTTTCAGT 60.203 47.619 1.90 0.00 0.00 3.41
369 370 2.039216 TGAATCTTGGCCGGTTTCAGTA 59.961 45.455 1.90 0.00 0.00 2.74
370 371 2.403252 ATCTTGGCCGGTTTCAGTAG 57.597 50.000 1.90 0.00 0.00 2.57
371 372 1.053424 TCTTGGCCGGTTTCAGTAGT 58.947 50.000 1.90 0.00 0.00 2.73
372 373 1.418637 TCTTGGCCGGTTTCAGTAGTT 59.581 47.619 1.90 0.00 0.00 2.24
373 374 2.633967 TCTTGGCCGGTTTCAGTAGTTA 59.366 45.455 1.90 0.00 0.00 2.24
374 375 3.071312 TCTTGGCCGGTTTCAGTAGTTAA 59.929 43.478 1.90 0.00 0.00 2.01
375 376 3.048337 TGGCCGGTTTCAGTAGTTAAG 57.952 47.619 1.90 0.00 0.00 1.85
376 377 2.289819 TGGCCGGTTTCAGTAGTTAAGG 60.290 50.000 1.90 0.00 0.00 2.69
377 378 2.353323 GCCGGTTTCAGTAGTTAAGGG 58.647 52.381 1.90 0.00 0.00 3.95
378 379 2.353323 CCGGTTTCAGTAGTTAAGGGC 58.647 52.381 0.00 0.00 0.00 5.19
379 380 1.997606 CGGTTTCAGTAGTTAAGGGCG 59.002 52.381 0.00 0.00 0.00 6.13
380 381 1.736126 GGTTTCAGTAGTTAAGGGCGC 59.264 52.381 0.00 0.00 0.00 6.53
381 382 2.419667 GTTTCAGTAGTTAAGGGCGCA 58.580 47.619 10.83 0.00 0.00 6.09
382 383 2.809696 GTTTCAGTAGTTAAGGGCGCAA 59.190 45.455 10.83 0.00 0.00 4.85
383 384 2.380084 TCAGTAGTTAAGGGCGCAAG 57.620 50.000 10.83 0.00 43.44 4.01
384 385 1.621814 TCAGTAGTTAAGGGCGCAAGT 59.378 47.619 10.83 0.00 41.68 3.16
385 386 2.038033 TCAGTAGTTAAGGGCGCAAGTT 59.962 45.455 10.83 0.90 41.68 2.66
386 387 3.258872 TCAGTAGTTAAGGGCGCAAGTTA 59.741 43.478 10.83 0.00 41.68 2.24
387 388 4.081309 TCAGTAGTTAAGGGCGCAAGTTAT 60.081 41.667 10.83 0.00 41.68 1.89
388 389 4.270325 CAGTAGTTAAGGGCGCAAGTTATC 59.730 45.833 10.83 2.86 41.68 1.75
389 390 2.640184 AGTTAAGGGCGCAAGTTATCC 58.360 47.619 10.83 0.00 41.68 2.59
390 391 1.329599 GTTAAGGGCGCAAGTTATCCG 59.670 52.381 10.83 0.00 41.68 4.18
391 392 0.179067 TAAGGGCGCAAGTTATCCGG 60.179 55.000 10.83 0.00 41.68 5.14
392 393 2.124860 GGGCGCAAGTTATCCGGT 60.125 61.111 10.83 0.00 41.68 5.28
393 394 1.747745 GGGCGCAAGTTATCCGGTT 60.748 57.895 10.83 0.00 41.68 4.44
394 395 1.310216 GGGCGCAAGTTATCCGGTTT 61.310 55.000 10.83 0.00 41.68 3.27
395 396 0.524414 GGCGCAAGTTATCCGGTTTT 59.476 50.000 10.83 0.00 41.68 2.43
396 397 1.613270 GCGCAAGTTATCCGGTTTTG 58.387 50.000 0.30 1.72 41.68 2.44
397 398 1.198178 GCGCAAGTTATCCGGTTTTGA 59.802 47.619 0.30 0.00 41.68 2.69
398 399 2.350964 GCGCAAGTTATCCGGTTTTGAA 60.351 45.455 0.30 0.00 41.68 2.69
399 400 3.488489 CGCAAGTTATCCGGTTTTGAAG 58.512 45.455 0.00 0.00 0.00 3.02
400 401 3.058501 CGCAAGTTATCCGGTTTTGAAGT 60.059 43.478 0.00 0.00 0.00 3.01
401 402 4.555906 CGCAAGTTATCCGGTTTTGAAGTT 60.556 41.667 0.00 0.00 0.00 2.66
402 403 4.679654 GCAAGTTATCCGGTTTTGAAGTTG 59.320 41.667 0.00 9.91 34.83 3.16
403 404 5.506649 GCAAGTTATCCGGTTTTGAAGTTGA 60.507 40.000 19.02 0.00 33.99 3.18
404 405 5.941948 AGTTATCCGGTTTTGAAGTTGAG 57.058 39.130 0.00 0.00 0.00 3.02
405 406 4.760204 AGTTATCCGGTTTTGAAGTTGAGG 59.240 41.667 0.00 0.00 0.00 3.86
406 407 1.975660 TCCGGTTTTGAAGTTGAGGG 58.024 50.000 0.00 0.00 0.00 4.30
407 408 1.491332 TCCGGTTTTGAAGTTGAGGGA 59.509 47.619 0.00 0.00 0.00 4.20
408 409 1.607148 CCGGTTTTGAAGTTGAGGGAC 59.393 52.381 0.00 0.00 0.00 4.46
409 410 1.607148 CGGTTTTGAAGTTGAGGGACC 59.393 52.381 0.00 0.00 0.00 4.46
410 411 2.661718 GGTTTTGAAGTTGAGGGACCA 58.338 47.619 0.00 0.00 0.00 4.02
411 412 3.028130 GGTTTTGAAGTTGAGGGACCAA 58.972 45.455 0.00 0.00 0.00 3.67
412 413 3.449377 GGTTTTGAAGTTGAGGGACCAAA 59.551 43.478 0.00 0.00 0.00 3.28
413 414 4.100963 GGTTTTGAAGTTGAGGGACCAAAT 59.899 41.667 0.00 0.00 0.00 2.32
414 415 5.289595 GTTTTGAAGTTGAGGGACCAAATC 58.710 41.667 0.00 0.00 0.00 2.17
415 416 4.453480 TTGAAGTTGAGGGACCAAATCT 57.547 40.909 0.00 0.00 0.00 2.40
416 417 5.576563 TTGAAGTTGAGGGACCAAATCTA 57.423 39.130 0.00 0.00 0.00 1.98
417 418 5.165961 TGAAGTTGAGGGACCAAATCTAG 57.834 43.478 0.00 0.00 0.00 2.43
418 419 4.844085 TGAAGTTGAGGGACCAAATCTAGA 59.156 41.667 0.00 0.00 0.00 2.43
419 420 4.828072 AGTTGAGGGACCAAATCTAGAC 57.172 45.455 0.00 0.00 0.00 2.59
420 421 4.430441 AGTTGAGGGACCAAATCTAGACT 58.570 43.478 0.00 0.00 0.00 3.24
421 422 4.846940 AGTTGAGGGACCAAATCTAGACTT 59.153 41.667 0.00 0.00 0.00 3.01
422 423 5.046231 AGTTGAGGGACCAAATCTAGACTTC 60.046 44.000 0.00 0.00 0.00 3.01
423 424 3.447586 TGAGGGACCAAATCTAGACTTCG 59.552 47.826 0.00 0.00 0.00 3.79
424 425 2.168728 AGGGACCAAATCTAGACTTCGC 59.831 50.000 0.00 0.00 0.00 4.70
425 426 2.552031 GGACCAAATCTAGACTTCGCC 58.448 52.381 0.00 0.00 0.00 5.54
426 427 2.093658 GGACCAAATCTAGACTTCGCCA 60.094 50.000 0.00 0.00 0.00 5.69
427 428 3.596214 GACCAAATCTAGACTTCGCCAA 58.404 45.455 0.00 0.00 0.00 4.52
428 429 3.600388 ACCAAATCTAGACTTCGCCAAG 58.400 45.455 0.00 0.00 35.50 3.61
429 430 3.260884 ACCAAATCTAGACTTCGCCAAGA 59.739 43.478 0.00 0.00 33.34 3.02
430 431 4.253685 CCAAATCTAGACTTCGCCAAGAA 58.746 43.478 0.00 0.00 37.31 2.52
431 432 4.878397 CCAAATCTAGACTTCGCCAAGAAT 59.122 41.667 0.00 0.00 38.34 2.40
432 433 5.355350 CCAAATCTAGACTTCGCCAAGAATT 59.645 40.000 0.00 0.00 38.34 2.17
433 434 6.538742 CCAAATCTAGACTTCGCCAAGAATTA 59.461 38.462 0.00 0.00 38.34 1.40
434 435 7.065803 CCAAATCTAGACTTCGCCAAGAATTAA 59.934 37.037 0.00 0.00 38.34 1.40
435 436 7.778470 AATCTAGACTTCGCCAAGAATTAAG 57.222 36.000 0.00 0.00 38.34 1.85
436 437 5.661458 TCTAGACTTCGCCAAGAATTAAGG 58.339 41.667 0.00 0.00 38.34 2.69
437 438 3.610911 AGACTTCGCCAAGAATTAAGGG 58.389 45.455 0.00 0.00 38.34 3.95
438 439 3.263425 AGACTTCGCCAAGAATTAAGGGA 59.737 43.478 0.00 0.00 38.34 4.20
439 440 4.080299 AGACTTCGCCAAGAATTAAGGGAT 60.080 41.667 0.00 0.00 38.34 3.85
440 441 3.947834 ACTTCGCCAAGAATTAAGGGATG 59.052 43.478 0.00 0.00 38.34 3.51
441 442 3.924114 TCGCCAAGAATTAAGGGATGA 57.076 42.857 0.00 0.00 0.00 2.92
442 443 4.229304 TCGCCAAGAATTAAGGGATGAA 57.771 40.909 0.00 0.00 0.00 2.57
443 444 4.594970 TCGCCAAGAATTAAGGGATGAAA 58.405 39.130 0.00 0.00 0.00 2.69
444 445 5.013547 TCGCCAAGAATTAAGGGATGAAAA 58.986 37.500 0.00 0.00 0.00 2.29
445 446 5.125417 TCGCCAAGAATTAAGGGATGAAAAG 59.875 40.000 0.00 0.00 0.00 2.27
446 447 5.105756 CGCCAAGAATTAAGGGATGAAAAGT 60.106 40.000 0.00 0.00 0.00 2.66
447 448 6.094881 CGCCAAGAATTAAGGGATGAAAAGTA 59.905 38.462 0.00 0.00 0.00 2.24
448 449 7.201821 CGCCAAGAATTAAGGGATGAAAAGTAT 60.202 37.037 0.00 0.00 0.00 2.12
449 450 9.131791 GCCAAGAATTAAGGGATGAAAAGTATA 57.868 33.333 0.00 0.00 0.00 1.47
482 483 9.562583 TCTTTTATTAATACAAAATGTGGACGC 57.437 29.630 0.00 0.00 0.00 5.19
483 484 7.956508 TTTATTAATACAAAATGTGGACGCG 57.043 32.000 3.53 3.53 0.00 6.01
484 485 5.554822 ATTAATACAAAATGTGGACGCGT 57.445 34.783 13.85 13.85 0.00 6.01
485 486 2.892373 ATACAAAATGTGGACGCGTG 57.108 45.000 20.70 0.01 0.00 5.34
486 487 0.869068 TACAAAATGTGGACGCGTGG 59.131 50.000 20.70 0.00 0.00 4.94
487 488 0.816018 ACAAAATGTGGACGCGTGGA 60.816 50.000 20.70 0.00 0.00 4.02
488 489 0.385473 CAAAATGTGGACGCGTGGAC 60.385 55.000 20.70 13.83 0.00 4.02
489 490 0.534203 AAAATGTGGACGCGTGGACT 60.534 50.000 20.70 0.00 0.00 3.85
490 491 0.949105 AAATGTGGACGCGTGGACTC 60.949 55.000 20.70 8.41 0.00 3.36
491 492 1.816863 AATGTGGACGCGTGGACTCT 61.817 55.000 20.70 1.77 0.00 3.24
492 493 2.126424 GTGGACGCGTGGACTCTC 60.126 66.667 20.70 0.00 0.00 3.20
493 494 3.733960 TGGACGCGTGGACTCTCG 61.734 66.667 20.70 0.00 0.00 4.04
494 495 3.735029 GGACGCGTGGACTCTCGT 61.735 66.667 20.70 0.00 37.92 4.18
495 496 2.254651 GACGCGTGGACTCTCGTT 59.745 61.111 20.70 0.00 35.12 3.85
496 497 2.050351 ACGCGTGGACTCTCGTTG 60.050 61.111 12.93 0.00 33.06 4.10
497 498 2.805353 CGCGTGGACTCTCGTTGG 60.805 66.667 0.00 0.00 33.06 3.77
498 499 3.112709 GCGTGGACTCTCGTTGGC 61.113 66.667 0.00 0.00 33.06 4.52
499 500 2.432628 CGTGGACTCTCGTTGGCC 60.433 66.667 0.00 0.00 0.00 5.36
500 501 2.932234 CGTGGACTCTCGTTGGCCT 61.932 63.158 3.32 0.00 0.00 5.19
501 502 1.371558 GTGGACTCTCGTTGGCCTT 59.628 57.895 3.32 0.00 0.00 4.35
502 503 0.670854 GTGGACTCTCGTTGGCCTTC 60.671 60.000 3.32 0.00 0.00 3.46
503 504 1.446272 GGACTCTCGTTGGCCTTCG 60.446 63.158 3.32 9.16 0.00 3.79
504 505 1.289380 GACTCTCGTTGGCCTTCGT 59.711 57.895 16.75 1.48 0.00 3.85
505 506 1.006102 ACTCTCGTTGGCCTTCGTG 60.006 57.895 16.75 14.87 0.00 4.35
506 507 1.738099 CTCTCGTTGGCCTTCGTGG 60.738 63.158 16.75 12.10 39.35 4.94
516 517 3.220447 CCTTCGTGGCCGACTTTAA 57.780 52.632 0.00 0.00 44.13 1.52
517 518 1.734163 CCTTCGTGGCCGACTTTAAT 58.266 50.000 0.00 0.00 44.13 1.40
518 519 1.396996 CCTTCGTGGCCGACTTTAATG 59.603 52.381 0.00 0.00 44.13 1.90
519 520 2.073816 CTTCGTGGCCGACTTTAATGT 58.926 47.619 0.00 0.00 44.13 2.71
520 521 2.172851 TCGTGGCCGACTTTAATGTT 57.827 45.000 0.00 0.00 38.40 2.71
521 522 2.496111 TCGTGGCCGACTTTAATGTTT 58.504 42.857 0.00 0.00 38.40 2.83
522 523 2.224549 TCGTGGCCGACTTTAATGTTTG 59.775 45.455 0.00 0.00 38.40 2.93
523 524 2.224549 CGTGGCCGACTTTAATGTTTGA 59.775 45.455 0.00 0.00 35.63 2.69
524 525 3.119990 CGTGGCCGACTTTAATGTTTGAT 60.120 43.478 0.00 0.00 35.63 2.57
525 526 4.614993 CGTGGCCGACTTTAATGTTTGATT 60.615 41.667 0.00 0.00 35.63 2.57
526 527 5.391097 CGTGGCCGACTTTAATGTTTGATTA 60.391 40.000 0.00 0.00 35.63 1.75
527 528 6.383415 GTGGCCGACTTTAATGTTTGATTAA 58.617 36.000 0.00 0.00 0.00 1.40
528 529 7.033185 GTGGCCGACTTTAATGTTTGATTAAT 58.967 34.615 0.00 0.00 0.00 1.40
529 530 7.009174 GTGGCCGACTTTAATGTTTGATTAATG 59.991 37.037 0.00 0.00 0.00 1.90
530 531 6.019881 GGCCGACTTTAATGTTTGATTAATGC 60.020 38.462 0.00 0.00 0.00 3.56
531 532 6.529829 GCCGACTTTAATGTTTGATTAATGCA 59.470 34.615 0.00 0.00 0.00 3.96
532 533 7.222611 GCCGACTTTAATGTTTGATTAATGCAT 59.777 33.333 0.00 0.00 0.00 3.96
533 534 8.533965 CCGACTTTAATGTTTGATTAATGCATG 58.466 33.333 0.00 0.00 0.00 4.06
534 535 9.075519 CGACTTTAATGTTTGATTAATGCATGT 57.924 29.630 0.00 0.00 0.00 3.21
553 554 3.720531 TTTTTCTCGCGCCGTGAA 58.279 50.000 0.00 7.21 37.53 3.18
554 555 2.015382 TTTTTCTCGCGCCGTGAAA 58.985 47.368 18.44 18.44 43.87 2.69
555 556 3.720531 TTTCTCGCGCCGTGAAAA 58.279 50.000 19.39 3.17 43.08 2.29
556 557 2.015382 TTTCTCGCGCCGTGAAAAA 58.985 47.368 19.39 0.00 43.08 1.94
557 558 0.589223 TTTCTCGCGCCGTGAAAAAT 59.411 45.000 19.39 0.00 43.08 1.82
558 559 0.110419 TTCTCGCGCCGTGAAAAATG 60.110 50.000 0.00 0.00 36.64 2.32
559 560 1.511887 CTCGCGCCGTGAAAAATGG 60.512 57.895 0.00 0.00 38.09 3.16
560 561 2.503809 CGCGCCGTGAAAAATGGG 60.504 61.111 0.00 0.00 35.20 4.00
561 562 2.809174 GCGCCGTGAAAAATGGGC 60.809 61.111 0.00 0.00 42.14 5.36
562 563 2.126110 CGCCGTGAAAAATGGGCC 60.126 61.111 0.00 0.00 42.59 5.80
563 564 2.126110 GCCGTGAAAAATGGGCCG 60.126 61.111 0.00 0.00 39.67 6.13
564 565 2.571231 CCGTGAAAAATGGGCCGG 59.429 61.111 0.00 0.00 0.00 6.13
565 566 2.571231 CGTGAAAAATGGGCCGGG 59.429 61.111 2.18 0.00 0.00 5.73
566 567 2.264480 GTGAAAAATGGGCCGGGC 59.736 61.111 22.00 22.00 0.00 6.13
567 568 2.119391 TGAAAAATGGGCCGGGCT 59.881 55.556 28.80 6.40 0.00 5.19
568 569 0.968393 GTGAAAAATGGGCCGGGCTA 60.968 55.000 28.80 23.99 0.00 3.93
569 570 0.682855 TGAAAAATGGGCCGGGCTAG 60.683 55.000 28.80 0.00 0.00 3.42
570 571 0.683179 GAAAAATGGGCCGGGCTAGT 60.683 55.000 28.80 19.68 0.00 2.57
571 572 0.970427 AAAAATGGGCCGGGCTAGTG 60.970 55.000 28.80 0.00 0.00 2.74
572 573 2.150014 AAAATGGGCCGGGCTAGTGT 62.150 55.000 28.80 14.32 0.00 3.55
573 574 2.150014 AAATGGGCCGGGCTAGTGTT 62.150 55.000 28.80 14.41 0.00 3.32
574 575 2.837031 AATGGGCCGGGCTAGTGTTG 62.837 60.000 28.80 0.00 0.00 3.33
575 576 4.029809 GGGCCGGGCTAGTGTTGT 62.030 66.667 28.80 0.00 0.00 3.32
576 577 2.746277 GGCCGGGCTAGTGTTGTG 60.746 66.667 22.87 0.00 0.00 3.33
577 578 3.431725 GCCGGGCTAGTGTTGTGC 61.432 66.667 12.87 0.00 0.00 4.57
578 579 2.031919 CCGGGCTAGTGTTGTGCA 59.968 61.111 0.00 0.00 0.00 4.57
596 597 2.816083 CACGCGCCGACCCAAATA 60.816 61.111 5.73 0.00 0.00 1.40
597 598 2.816520 ACGCGCCGACCCAAATAC 60.817 61.111 5.73 0.00 0.00 1.89
598 599 3.920553 CGCGCCGACCCAAATACG 61.921 66.667 0.00 0.00 0.00 3.06
599 600 2.509786 GCGCCGACCCAAATACGA 60.510 61.111 0.00 0.00 0.00 3.43
600 601 2.101835 GCGCCGACCCAAATACGAA 61.102 57.895 0.00 0.00 0.00 3.85
601 602 1.637478 GCGCCGACCCAAATACGAAA 61.637 55.000 0.00 0.00 0.00 3.46
602 603 0.372334 CGCCGACCCAAATACGAAAG 59.628 55.000 0.00 0.00 0.00 2.62
603 604 0.098200 GCCGACCCAAATACGAAAGC 59.902 55.000 0.00 0.00 0.00 3.51
604 605 0.372334 CCGACCCAAATACGAAAGCG 59.628 55.000 0.00 0.00 44.79 4.68
605 606 0.372334 CGACCCAAATACGAAAGCGG 59.628 55.000 0.00 0.00 43.17 5.52
606 607 1.729284 GACCCAAATACGAAAGCGGA 58.271 50.000 0.00 0.00 43.17 5.54
607 608 2.285977 GACCCAAATACGAAAGCGGAT 58.714 47.619 0.00 0.00 44.66 4.18
608 609 3.460103 GACCCAAATACGAAAGCGGATA 58.540 45.455 0.00 0.00 41.06 2.59
609 610 4.062991 GACCCAAATACGAAAGCGGATAT 58.937 43.478 0.00 0.00 41.06 1.63
610 611 4.457466 ACCCAAATACGAAAGCGGATATT 58.543 39.130 0.00 0.00 41.06 1.28
611 612 4.514066 ACCCAAATACGAAAGCGGATATTC 59.486 41.667 0.00 0.00 41.06 1.75
616 617 2.905260 CGAAAGCGGATATTCGTGTC 57.095 50.000 5.08 0.00 42.47 3.67
617 618 2.460918 CGAAAGCGGATATTCGTGTCT 58.539 47.619 5.08 0.00 42.47 3.41
618 619 2.216488 CGAAAGCGGATATTCGTGTCTG 59.784 50.000 5.08 0.00 42.47 3.51
619 620 2.961526 AAGCGGATATTCGTGTCTGT 57.038 45.000 5.08 0.00 0.00 3.41
620 621 2.493713 AGCGGATATTCGTGTCTGTC 57.506 50.000 5.08 0.00 0.00 3.51
621 622 2.025155 AGCGGATATTCGTGTCTGTCT 58.975 47.619 5.08 0.00 0.00 3.41
622 623 2.120232 GCGGATATTCGTGTCTGTCTG 58.880 52.381 5.08 0.00 0.00 3.51
623 624 2.732366 CGGATATTCGTGTCTGTCTGG 58.268 52.381 0.00 0.00 0.00 3.86
624 625 2.474816 GGATATTCGTGTCTGTCTGGC 58.525 52.381 0.00 0.00 0.00 4.85
625 626 2.474816 GATATTCGTGTCTGTCTGGCC 58.525 52.381 0.00 0.00 0.00 5.36
626 627 0.172578 TATTCGTGTCTGTCTGGCCG 59.827 55.000 0.00 0.00 0.00 6.13
627 628 1.532604 ATTCGTGTCTGTCTGGCCGA 61.533 55.000 0.00 0.00 0.00 5.54
628 629 2.416244 TTCGTGTCTGTCTGGCCGAC 62.416 60.000 17.43 17.43 43.14 4.79
629 630 2.048127 GTGTCTGTCTGGCCGACC 60.048 66.667 20.21 9.34 42.13 4.79
630 631 3.311110 TGTCTGTCTGGCCGACCC 61.311 66.667 20.21 11.46 42.13 4.46
631 632 3.311110 GTCTGTCTGGCCGACCCA 61.311 66.667 20.21 7.97 42.13 4.51
632 633 2.525629 TCTGTCTGGCCGACCCAA 60.526 61.111 20.21 7.24 44.81 4.12
633 634 2.144078 TCTGTCTGGCCGACCCAAA 61.144 57.895 20.21 5.61 44.81 3.28
634 635 1.672356 CTGTCTGGCCGACCCAAAG 60.672 63.158 20.21 10.37 44.81 2.77
635 636 2.359975 GTCTGGCCGACCCAAAGG 60.360 66.667 14.46 0.00 44.81 3.11
651 652 5.828299 CCAAAGGGATAAATAGCGAACAA 57.172 39.130 0.00 0.00 35.59 2.83
652 653 6.202516 CCAAAGGGATAAATAGCGAACAAA 57.797 37.500 0.00 0.00 35.59 2.83
653 654 6.626302 CCAAAGGGATAAATAGCGAACAAAA 58.374 36.000 0.00 0.00 35.59 2.44
654 655 7.264947 CCAAAGGGATAAATAGCGAACAAAAT 58.735 34.615 0.00 0.00 35.59 1.82
655 656 7.435192 CCAAAGGGATAAATAGCGAACAAAATC 59.565 37.037 0.00 0.00 35.59 2.17
656 657 7.639113 AAGGGATAAATAGCGAACAAAATCA 57.361 32.000 0.00 0.00 0.00 2.57
657 658 7.027778 AGGGATAAATAGCGAACAAAATCAC 57.972 36.000 0.00 0.00 0.00 3.06
658 659 6.039382 AGGGATAAATAGCGAACAAAATCACC 59.961 38.462 0.00 0.00 0.00 4.02
659 660 6.183360 GGGATAAATAGCGAACAAAATCACCA 60.183 38.462 0.00 0.00 0.00 4.17
660 661 7.425606 GGATAAATAGCGAACAAAATCACCAT 58.574 34.615 0.00 0.00 0.00 3.55
661 662 7.591426 GGATAAATAGCGAACAAAATCACCATC 59.409 37.037 0.00 0.00 0.00 3.51
662 663 4.900635 ATAGCGAACAAAATCACCATCC 57.099 40.909 0.00 0.00 0.00 3.51
663 664 1.468520 AGCGAACAAAATCACCATCCG 59.531 47.619 0.00 0.00 0.00 4.18
664 665 1.199097 GCGAACAAAATCACCATCCGT 59.801 47.619 0.00 0.00 0.00 4.69
665 666 2.351350 GCGAACAAAATCACCATCCGTT 60.351 45.455 0.00 0.00 0.00 4.44
666 667 3.855524 GCGAACAAAATCACCATCCGTTT 60.856 43.478 0.00 0.00 0.00 3.60
667 668 3.668191 CGAACAAAATCACCATCCGTTTG 59.332 43.478 0.00 0.00 35.72 2.93
668 669 3.658757 ACAAAATCACCATCCGTTTGG 57.341 42.857 0.00 0.00 42.82 3.28
669 670 2.298729 ACAAAATCACCATCCGTTTGGG 59.701 45.455 5.91 0.00 41.35 4.12
670 671 2.298729 CAAAATCACCATCCGTTTGGGT 59.701 45.455 5.91 0.00 41.35 4.51
671 672 1.834188 AATCACCATCCGTTTGGGTC 58.166 50.000 5.91 0.00 41.35 4.46
672 673 0.392461 ATCACCATCCGTTTGGGTCG 60.392 55.000 5.91 0.00 41.35 4.79
674 675 2.349755 CCATCCGTTTGGGTCGGT 59.650 61.111 4.36 0.00 46.86 4.69
675 676 1.743995 CCATCCGTTTGGGTCGGTC 60.744 63.158 4.36 0.00 46.86 4.79
676 677 1.743995 CATCCGTTTGGGTCGGTCC 60.744 63.158 4.36 0.00 46.86 4.46
677 678 3.305177 ATCCGTTTGGGTCGGTCCG 62.305 63.158 4.39 4.39 46.86 4.79
678 679 4.303993 CCGTTTGGGTCGGTCCGT 62.304 66.667 11.88 0.00 42.62 4.69
679 680 2.280321 CGTTTGGGTCGGTCCGTT 60.280 61.111 11.88 0.00 37.00 4.44
680 681 2.600475 CGTTTGGGTCGGTCCGTTG 61.600 63.158 11.88 0.00 37.00 4.10
681 682 2.111460 TTTGGGTCGGTCCGTTGG 59.889 61.111 11.88 0.00 37.00 3.77
682 683 2.441675 TTTGGGTCGGTCCGTTGGA 61.442 57.895 11.88 0.00 37.00 3.53
683 684 2.386064 TTTGGGTCGGTCCGTTGGAG 62.386 60.000 11.88 0.00 37.00 3.86
684 685 3.308705 GGGTCGGTCCGTTGGAGT 61.309 66.667 11.88 0.00 37.00 3.85
685 686 2.739132 GGTCGGTCCGTTGGAGTT 59.261 61.111 11.88 0.00 29.39 3.01
686 687 1.535204 GGGTCGGTCCGTTGGAGTTA 61.535 60.000 11.88 0.00 37.00 2.24
687 688 0.389037 GGTCGGTCCGTTGGAGTTAC 60.389 60.000 11.88 0.00 29.39 2.50
688 689 0.600057 GTCGGTCCGTTGGAGTTACT 59.400 55.000 11.88 0.00 29.39 2.24
689 690 0.883833 TCGGTCCGTTGGAGTTACTC 59.116 55.000 11.88 3.36 29.39 2.59
690 691 0.886563 CGGTCCGTTGGAGTTACTCT 59.113 55.000 12.41 0.00 29.39 3.24
691 692 1.271656 CGGTCCGTTGGAGTTACTCTT 59.728 52.381 12.41 0.00 29.39 2.85
692 693 2.489329 CGGTCCGTTGGAGTTACTCTTA 59.511 50.000 12.41 0.00 29.39 2.10
693 694 3.671702 CGGTCCGTTGGAGTTACTCTTAC 60.672 52.174 12.41 9.31 29.39 2.34
694 695 3.367806 GGTCCGTTGGAGTTACTCTTACC 60.368 52.174 12.41 7.28 29.39 2.85
704 705 6.211184 TGGAGTTACTCTTACCCGTTTCATAA 59.789 38.462 12.41 0.00 0.00 1.90
705 706 6.533012 GGAGTTACTCTTACCCGTTTCATAAC 59.467 42.308 12.41 0.00 0.00 1.89
725 726 9.599866 TCATAACAGAAGTCTACCAATGTAATG 57.400 33.333 0.00 0.00 0.00 1.90
743 744 7.446001 TGTAATGAATGTTGTAAGCATGACA 57.554 32.000 0.00 0.00 30.02 3.58
751 752 4.511454 TGTTGTAAGCATGACAGTGAGTTC 59.489 41.667 0.00 0.00 25.67 3.01
757 758 0.959553 ATGACAGTGAGTTCGTCGGT 59.040 50.000 0.00 0.00 32.17 4.69
758 759 0.030235 TGACAGTGAGTTCGTCGGTG 59.970 55.000 0.00 0.00 32.17 4.94
802 803 0.036952 CCTGTGAGCGGAGTGACATT 60.037 55.000 0.00 0.00 0.00 2.71
806 807 0.969149 TGAGCGGAGTGACATTCTGT 59.031 50.000 8.42 0.00 0.00 3.41
811 812 1.067283 CGGAGTGACATTCTGTGAGCT 60.067 52.381 0.00 0.00 0.00 4.09
812 813 2.611473 CGGAGTGACATTCTGTGAGCTT 60.611 50.000 0.00 0.00 0.00 3.74
813 814 2.740981 GGAGTGACATTCTGTGAGCTTG 59.259 50.000 0.00 0.00 0.00 4.01
814 815 3.397482 GAGTGACATTCTGTGAGCTTGT 58.603 45.455 0.00 0.00 0.00 3.16
815 816 3.397482 AGTGACATTCTGTGAGCTTGTC 58.603 45.455 5.66 5.66 37.73 3.18
816 817 3.133691 GTGACATTCTGTGAGCTTGTCA 58.866 45.455 10.36 10.36 43.07 3.58
829 830 5.105063 TGAGCTTGTCACTATCAGAATTCG 58.895 41.667 0.00 0.00 0.00 3.34
837 838 2.952978 ACTATCAGAATTCGACGGAGCT 59.047 45.455 0.00 0.00 0.00 4.09
918 928 6.647895 TCCTTGTACAAGATAGTTTTCGAACC 59.352 38.462 32.50 0.00 40.79 3.62
919 933 6.400727 CCTTGTACAAGATAGTTTTCGAACCG 60.401 42.308 32.50 9.55 40.79 4.44
939 964 2.097299 CGTACATACGCGTGTTGTTGTT 60.097 45.455 27.21 11.03 43.14 2.83
962 994 1.459592 CGTGAGCTTTACAAGGAACGG 59.540 52.381 0.00 0.00 0.00 4.44
966 998 1.084289 GCTTTACAAGGAACGGCGAT 58.916 50.000 16.62 0.00 0.00 4.58
971 1003 0.322322 ACAAGGAACGGCGATACCAA 59.678 50.000 16.62 0.00 39.03 3.67
1033 1071 2.159099 TCATCCAAGACCACAGATACGC 60.159 50.000 0.00 0.00 0.00 4.42
1043 1081 1.091771 ACAGATACGCACCATGCAGC 61.092 55.000 1.20 0.00 45.36 5.25
1175 1257 1.926490 CACTGCTTGTTTTTGCGCC 59.074 52.632 4.18 0.00 0.00 6.53
1274 1368 1.133637 CGAGGAGATCAAGGAGGAGGA 60.134 57.143 0.00 0.00 0.00 3.71
1275 1369 2.490718 CGAGGAGATCAAGGAGGAGGAT 60.491 54.545 0.00 0.00 0.00 3.24
1276 1370 2.899256 GAGGAGATCAAGGAGGAGGATG 59.101 54.545 0.00 0.00 0.00 3.51
1501 1610 1.153349 GCTAGCGCCTTACCTTGCT 60.153 57.895 2.29 0.00 41.32 3.91
1634 1743 4.436317 CGGCAAATTGGCAAAAGAATCATG 60.436 41.667 19.43 0.00 43.94 3.07
1657 1766 1.347050 CGGGGCATCTCTGATTGATCT 59.653 52.381 0.00 0.00 0.00 2.75
1704 1813 5.640147 TCCATGAAACACATTTAAGTCCCT 58.360 37.500 0.00 0.00 37.07 4.20
1779 1889 0.252696 TGCCTACACTGGAGACCCAT 60.253 55.000 0.00 0.00 42.59 4.00
1784 1894 4.030913 CCTACACTGGAGACCCATTTCTA 58.969 47.826 0.00 0.00 42.59 2.10
1824 1934 4.475944 ACCGAATTTCAAAGCAAGAATCG 58.524 39.130 0.00 0.00 31.07 3.34
1827 1937 5.146460 CGAATTTCAAAGCAAGAATCGTCA 58.854 37.500 0.00 0.00 0.00 4.35
1843 1953 1.312815 GTCACTTCCAACTTGCAGCT 58.687 50.000 0.00 0.00 0.00 4.24
1858 1968 0.467384 CAGCTCACTCCGATTCCCAT 59.533 55.000 0.00 0.00 0.00 4.00
1869 1979 6.095440 CACTCCGATTCCCATGTTTAGAAAAT 59.905 38.462 0.00 0.00 0.00 1.82
1870 1980 6.663523 ACTCCGATTCCCATGTTTAGAAAATT 59.336 34.615 0.00 0.00 0.00 1.82
1924 3632 1.533338 CGTAGGTCCGGATCAAGAACG 60.533 57.143 19.03 16.33 0.00 3.95
1932 3640 1.722464 CGGATCAAGAACGTACGCAAA 59.278 47.619 16.72 0.00 0.00 3.68
1952 3660 1.542030 ACAGTCAACAGCCTCTCTACG 59.458 52.381 0.00 0.00 0.00 3.51
1990 3698 2.644992 CAACGGGGACAAGCAAGC 59.355 61.111 0.00 0.00 0.00 4.01
2009 3717 4.459089 GGTGCTCGAGCTGGGTCC 62.459 72.222 35.27 23.90 42.66 4.46
2023 3731 1.606885 GGGTCCCCGACGAACATGTA 61.607 60.000 0.00 0.00 32.65 2.29
2139 3850 1.226603 GATGAGCGTCGCCGTTACT 60.227 57.895 14.86 0.00 36.15 2.24
2346 6211 3.265791 GCTGTGGAGTTTGAGGATACAG 58.734 50.000 0.00 0.00 37.65 2.74
2423 6288 1.544686 GTTTTGCCAGTTGTCACACG 58.455 50.000 0.00 0.00 0.00 4.49
2426 6291 2.025589 TTGCCAGTTGTCACACGTAA 57.974 45.000 0.00 0.00 0.00 3.18
2443 6308 3.326880 ACGTAAAAGTGGGTCTCCAGATT 59.673 43.478 0.00 0.00 45.05 2.40
2444 6309 4.529377 ACGTAAAAGTGGGTCTCCAGATTA 59.471 41.667 0.00 0.00 45.05 1.75
2445 6310 5.109903 CGTAAAAGTGGGTCTCCAGATTAG 58.890 45.833 0.00 0.00 45.05 1.73
2446 6311 5.105473 CGTAAAAGTGGGTCTCCAGATTAGA 60.105 44.000 0.00 0.00 45.05 2.10
2447 6312 6.407074 CGTAAAAGTGGGTCTCCAGATTAGAT 60.407 42.308 0.00 0.00 45.05 1.98
2448 6313 6.394345 AAAAGTGGGTCTCCAGATTAGATT 57.606 37.500 0.00 0.00 45.05 2.40
2449 6314 7.510675 AAAAGTGGGTCTCCAGATTAGATTA 57.489 36.000 0.00 0.00 45.05 1.75
2455 6320 5.337975 GGGTCTCCAGATTAGATTAGATGCC 60.338 48.000 0.00 0.00 0.00 4.40
2476 6341 2.570181 GACCCAGGTCGTACACGG 59.430 66.667 0.05 0.00 40.29 4.94
2477 6342 1.973281 GACCCAGGTCGTACACGGA 60.973 63.158 0.05 0.00 40.29 4.69
2480 6345 1.436336 CCAGGTCGTACACGGATCC 59.564 63.158 0.00 0.00 40.29 3.36
2482 6347 2.117156 AGGTCGTACACGGATCCGG 61.117 63.158 35.87 26.10 44.69 5.14
2483 6348 2.278401 GTCGTACACGGATCCGGC 60.278 66.667 35.87 21.31 44.69 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.925268 GAATATCTTTTACGCGGATTAGAAAAA 57.075 29.630 12.47 0.00 0.00 1.94
6 7 9.100554 TGAATATCTTTTACGCGGATTAGAAAA 57.899 29.630 12.47 0.00 0.00 2.29
7 8 8.651391 TGAATATCTTTTACGCGGATTAGAAA 57.349 30.769 12.47 0.00 0.00 2.52
8 9 8.651391 TTGAATATCTTTTACGCGGATTAGAA 57.349 30.769 12.47 0.00 0.00 2.10
10 11 9.530129 GATTTGAATATCTTTTACGCGGATTAG 57.470 33.333 12.47 1.91 0.00 1.73
12 13 7.360361 GGATTTGAATATCTTTTACGCGGATT 58.640 34.615 12.47 0.00 0.00 3.01
13 14 6.347402 CGGATTTGAATATCTTTTACGCGGAT 60.347 38.462 12.47 5.47 0.00 4.18
14 15 5.050634 CGGATTTGAATATCTTTTACGCGGA 60.051 40.000 12.47 0.00 0.00 5.54
15 16 5.137403 CGGATTTGAATATCTTTTACGCGG 58.863 41.667 12.47 0.00 0.00 6.46
16 17 4.607235 GCGGATTTGAATATCTTTTACGCG 59.393 41.667 3.53 3.53 32.81 6.01
17 18 5.507077 TGCGGATTTGAATATCTTTTACGC 58.493 37.500 0.00 0.00 42.10 4.42
18 19 7.474332 CGTATGCGGATTTGAATATCTTTTACG 59.526 37.037 0.00 0.00 0.00 3.18
19 20 8.280497 ACGTATGCGGATTTGAATATCTTTTAC 58.720 33.333 8.39 0.00 43.45 2.01
20 21 8.373048 ACGTATGCGGATTTGAATATCTTTTA 57.627 30.769 8.39 0.00 43.45 1.52
21 22 7.259290 ACGTATGCGGATTTGAATATCTTTT 57.741 32.000 8.39 0.00 43.45 2.27
22 23 6.861065 ACGTATGCGGATTTGAATATCTTT 57.139 33.333 8.39 0.00 43.45 2.52
23 24 6.861065 AACGTATGCGGATTTGAATATCTT 57.139 33.333 8.39 0.00 43.45 2.40
24 25 6.861065 AAACGTATGCGGATTTGAATATCT 57.139 33.333 8.39 0.00 43.45 1.98
25 26 7.129622 TGAAAACGTATGCGGATTTGAATATC 58.870 34.615 8.39 0.00 43.45 1.63
26 27 7.022055 TGAAAACGTATGCGGATTTGAATAT 57.978 32.000 8.39 0.00 43.45 1.28
27 28 6.424176 TGAAAACGTATGCGGATTTGAATA 57.576 33.333 8.39 0.00 43.45 1.75
28 29 5.303747 TGAAAACGTATGCGGATTTGAAT 57.696 34.783 8.39 0.00 43.45 2.57
29 30 4.750952 TGAAAACGTATGCGGATTTGAA 57.249 36.364 8.39 0.00 43.45 2.69
30 31 4.750952 TTGAAAACGTATGCGGATTTGA 57.249 36.364 8.39 0.07 43.45 2.69
31 32 6.088749 TGAAATTGAAAACGTATGCGGATTTG 59.911 34.615 8.39 0.00 43.45 2.32
32 33 6.088883 GTGAAATTGAAAACGTATGCGGATTT 59.911 34.615 8.39 8.46 43.45 2.17
33 34 5.571357 GTGAAATTGAAAACGTATGCGGATT 59.429 36.000 8.39 1.57 43.45 3.01
34 35 5.092781 GTGAAATTGAAAACGTATGCGGAT 58.907 37.500 8.39 0.00 43.45 4.18
35 36 4.023963 TGTGAAATTGAAAACGTATGCGGA 60.024 37.500 8.39 0.00 43.45 5.54
36 37 4.222886 TGTGAAATTGAAAACGTATGCGG 58.777 39.130 8.39 0.00 43.45 5.69
37 38 5.990745 ATGTGAAATTGAAAACGTATGCG 57.009 34.783 0.19 0.19 44.93 4.73
85 86 9.832445 AATTGACATACTTATTCCTATTCACGT 57.168 29.630 0.00 0.00 0.00 4.49
134 135 7.903145 ACTTCTTTAAAGTTCCTGTGGTTTTT 58.097 30.769 14.74 0.00 0.00 1.94
135 136 7.476540 ACTTCTTTAAAGTTCCTGTGGTTTT 57.523 32.000 14.74 0.00 0.00 2.43
136 137 7.201670 CGTACTTCTTTAAAGTTCCTGTGGTTT 60.202 37.037 14.74 0.00 0.00 3.27
137 138 6.259387 CGTACTTCTTTAAAGTTCCTGTGGTT 59.741 38.462 14.74 0.00 0.00 3.67
138 139 5.756833 CGTACTTCTTTAAAGTTCCTGTGGT 59.243 40.000 14.74 6.34 0.00 4.16
139 140 5.756833 ACGTACTTCTTTAAAGTTCCTGTGG 59.243 40.000 14.74 2.65 0.00 4.17
140 141 6.292703 CCACGTACTTCTTTAAAGTTCCTGTG 60.293 42.308 14.74 15.25 0.00 3.66
141 142 5.756833 CCACGTACTTCTTTAAAGTTCCTGT 59.243 40.000 14.74 9.77 0.00 4.00
142 143 5.987347 TCCACGTACTTCTTTAAAGTTCCTG 59.013 40.000 14.74 5.15 0.00 3.86
143 144 6.165700 TCCACGTACTTCTTTAAAGTTCCT 57.834 37.500 14.74 0.00 0.00 3.36
144 145 7.430992 AATCCACGTACTTCTTTAAAGTTCC 57.569 36.000 14.74 0.30 0.00 3.62
174 175 9.797556 GTACTTTTTCCAAGTTCACATACTTTT 57.202 29.630 0.00 0.00 36.24 2.27
175 176 8.962679 TGTACTTTTTCCAAGTTCACATACTTT 58.037 29.630 0.00 0.00 36.24 2.66
176 177 8.403236 GTGTACTTTTTCCAAGTTCACATACTT 58.597 33.333 15.56 0.00 43.51 2.24
177 178 7.554835 TGTGTACTTTTTCCAAGTTCACATACT 59.445 33.333 17.95 0.00 46.33 2.12
178 179 7.699566 TGTGTACTTTTTCCAAGTTCACATAC 58.300 34.615 17.95 1.17 46.33 2.39
179 180 7.867305 TGTGTACTTTTTCCAAGTTCACATA 57.133 32.000 17.95 3.94 46.33 2.29
180 181 6.767524 TGTGTACTTTTTCCAAGTTCACAT 57.232 33.333 17.95 0.00 46.33 3.21
182 183 8.474006 AATTTGTGTACTTTTTCCAAGTTCAC 57.526 30.769 14.25 14.25 43.97 3.18
183 184 9.495572 AAAATTTGTGTACTTTTTCCAAGTTCA 57.504 25.926 0.00 0.00 0.00 3.18
234 235 8.917655 CGTTTAATGTTTTCAAATTCGGGTATT 58.082 29.630 0.00 0.00 0.00 1.89
235 236 7.542824 CCGTTTAATGTTTTCAAATTCGGGTAT 59.457 33.333 0.00 0.00 31.98 2.73
236 237 6.862090 CCGTTTAATGTTTTCAAATTCGGGTA 59.138 34.615 0.00 0.00 31.98 3.69
237 238 5.692654 CCGTTTAATGTTTTCAAATTCGGGT 59.307 36.000 0.00 0.00 31.98 5.28
238 239 5.921408 TCCGTTTAATGTTTTCAAATTCGGG 59.079 36.000 0.00 0.00 34.17 5.14
239 240 6.639279 AGTCCGTTTAATGTTTTCAAATTCGG 59.361 34.615 0.00 0.00 34.43 4.30
240 241 7.617533 AGTCCGTTTAATGTTTTCAAATTCG 57.382 32.000 0.00 0.00 0.00 3.34
241 242 8.272866 CCAAGTCCGTTTAATGTTTTCAAATTC 58.727 33.333 0.00 0.00 0.00 2.17
242 243 7.982354 TCCAAGTCCGTTTAATGTTTTCAAATT 59.018 29.630 0.00 0.00 0.00 1.82
243 244 7.493367 TCCAAGTCCGTTTAATGTTTTCAAAT 58.507 30.769 0.00 0.00 0.00 2.32
244 245 6.864342 TCCAAGTCCGTTTAATGTTTTCAAA 58.136 32.000 0.00 0.00 0.00 2.69
245 246 6.452494 TCCAAGTCCGTTTAATGTTTTCAA 57.548 33.333 0.00 0.00 0.00 2.69
246 247 6.452494 TTCCAAGTCCGTTTAATGTTTTCA 57.548 33.333 0.00 0.00 0.00 2.69
247 248 7.042992 CCTTTTCCAAGTCCGTTTAATGTTTTC 60.043 37.037 0.00 0.00 0.00 2.29
248 249 6.759356 CCTTTTCCAAGTCCGTTTAATGTTTT 59.241 34.615 0.00 0.00 0.00 2.43
249 250 6.127281 ACCTTTTCCAAGTCCGTTTAATGTTT 60.127 34.615 0.00 0.00 0.00 2.83
250 251 5.361571 ACCTTTTCCAAGTCCGTTTAATGTT 59.638 36.000 0.00 0.00 0.00 2.71
251 252 4.891168 ACCTTTTCCAAGTCCGTTTAATGT 59.109 37.500 0.00 0.00 0.00 2.71
252 253 5.447624 ACCTTTTCCAAGTCCGTTTAATG 57.552 39.130 0.00 0.00 0.00 1.90
253 254 7.361457 CGAATACCTTTTCCAAGTCCGTTTAAT 60.361 37.037 0.00 0.00 0.00 1.40
254 255 6.073112 CGAATACCTTTTCCAAGTCCGTTTAA 60.073 38.462 0.00 0.00 0.00 1.52
255 256 5.409214 CGAATACCTTTTCCAAGTCCGTTTA 59.591 40.000 0.00 0.00 0.00 2.01
256 257 4.214758 CGAATACCTTTTCCAAGTCCGTTT 59.785 41.667 0.00 0.00 0.00 3.60
257 258 3.749609 CGAATACCTTTTCCAAGTCCGTT 59.250 43.478 0.00 0.00 0.00 4.44
258 259 3.007182 TCGAATACCTTTTCCAAGTCCGT 59.993 43.478 0.00 0.00 0.00 4.69
259 260 3.592059 TCGAATACCTTTTCCAAGTCCG 58.408 45.455 0.00 0.00 0.00 4.79
260 261 6.510879 AATTCGAATACCTTTTCCAAGTCC 57.489 37.500 11.83 0.00 0.00 3.85
261 262 7.590279 TCAAATTCGAATACCTTTTCCAAGTC 58.410 34.615 11.83 0.00 0.00 3.01
262 263 7.230712 ACTCAAATTCGAATACCTTTTCCAAGT 59.769 33.333 11.83 3.47 0.00 3.16
263 264 7.593825 ACTCAAATTCGAATACCTTTTCCAAG 58.406 34.615 11.83 2.92 0.00 3.61
264 265 7.519032 ACTCAAATTCGAATACCTTTTCCAA 57.481 32.000 11.83 0.00 0.00 3.53
265 266 6.128391 CGACTCAAATTCGAATACCTTTTCCA 60.128 38.462 11.83 0.00 38.85 3.53
266 267 6.248631 CGACTCAAATTCGAATACCTTTTCC 58.751 40.000 11.83 0.00 38.85 3.13
267 268 6.248631 CCGACTCAAATTCGAATACCTTTTC 58.751 40.000 11.83 3.64 38.85 2.29
268 269 5.391629 GCCGACTCAAATTCGAATACCTTTT 60.392 40.000 11.83 0.00 38.85 2.27
269 270 4.094442 GCCGACTCAAATTCGAATACCTTT 59.906 41.667 11.83 0.00 38.85 3.11
270 271 3.621715 GCCGACTCAAATTCGAATACCTT 59.378 43.478 11.83 0.00 38.85 3.50
271 272 3.195661 GCCGACTCAAATTCGAATACCT 58.804 45.455 11.83 0.00 38.85 3.08
272 273 2.933906 TGCCGACTCAAATTCGAATACC 59.066 45.455 11.83 0.00 38.85 2.73
273 274 3.541516 CGTGCCGACTCAAATTCGAATAC 60.542 47.826 11.83 0.74 38.85 1.89
274 275 2.601314 CGTGCCGACTCAAATTCGAATA 59.399 45.455 11.83 0.00 38.85 1.75
275 276 1.393539 CGTGCCGACTCAAATTCGAAT 59.606 47.619 4.39 4.39 38.85 3.34
276 277 0.787787 CGTGCCGACTCAAATTCGAA 59.212 50.000 0.00 0.00 38.85 3.71
277 278 1.011968 CCGTGCCGACTCAAATTCGA 61.012 55.000 0.00 0.00 38.85 3.71
278 279 1.289109 ACCGTGCCGACTCAAATTCG 61.289 55.000 0.00 0.00 36.20 3.34
279 280 0.442699 GACCGTGCCGACTCAAATTC 59.557 55.000 0.00 0.00 0.00 2.17
280 281 0.250124 TGACCGTGCCGACTCAAATT 60.250 50.000 0.00 0.00 0.00 1.82
281 282 0.250124 TTGACCGTGCCGACTCAAAT 60.250 50.000 0.00 0.00 0.00 2.32
282 283 0.462225 TTTGACCGTGCCGACTCAAA 60.462 50.000 12.16 12.16 33.96 2.69
283 284 0.462225 TTTTGACCGTGCCGACTCAA 60.462 50.000 0.00 1.20 0.00 3.02
284 285 1.144276 TTTTGACCGTGCCGACTCA 59.856 52.632 0.00 0.00 0.00 3.41
285 286 1.568025 GTTTTGACCGTGCCGACTC 59.432 57.895 0.00 0.00 0.00 3.36
286 287 1.890510 GGTTTTGACCGTGCCGACT 60.891 57.895 0.00 0.00 0.00 4.18
287 288 2.635338 GGTTTTGACCGTGCCGAC 59.365 61.111 0.00 0.00 0.00 4.79
295 296 1.152715 TCCCAACCCGGTTTTGACC 60.153 57.895 13.38 0.00 0.00 4.02
296 297 0.752376 TGTCCCAACCCGGTTTTGAC 60.752 55.000 16.93 16.93 0.00 3.18
297 298 0.466555 CTGTCCCAACCCGGTTTTGA 60.467 55.000 13.38 0.00 0.00 2.69
298 299 2.037871 CTGTCCCAACCCGGTTTTG 58.962 57.895 0.00 3.10 0.00 2.44
299 300 1.830847 GCTGTCCCAACCCGGTTTT 60.831 57.895 0.00 0.00 0.00 2.43
300 301 2.203437 GCTGTCCCAACCCGGTTT 60.203 61.111 0.00 0.00 0.00 3.27
301 302 3.494254 TGCTGTCCCAACCCGGTT 61.494 61.111 0.00 0.00 0.00 4.44
302 303 4.265056 GTGCTGTCCCAACCCGGT 62.265 66.667 0.00 0.00 0.00 5.28
304 305 3.783362 TTGGTGCTGTCCCAACCCG 62.783 63.158 0.00 0.00 37.05 5.28
305 306 1.045911 TTTTGGTGCTGTCCCAACCC 61.046 55.000 0.00 0.00 41.55 4.11
306 307 0.104120 GTTTTGGTGCTGTCCCAACC 59.896 55.000 0.00 0.00 41.55 3.77
307 308 0.104120 GGTTTTGGTGCTGTCCCAAC 59.896 55.000 0.00 0.00 41.55 3.77
308 309 1.388065 CGGTTTTGGTGCTGTCCCAA 61.388 55.000 0.00 0.00 40.15 4.12
309 310 1.826054 CGGTTTTGGTGCTGTCCCA 60.826 57.895 0.00 0.00 0.00 4.37
310 311 2.561037 CCGGTTTTGGTGCTGTCCC 61.561 63.158 0.00 0.00 0.00 4.46
311 312 1.792118 GACCGGTTTTGGTGCTGTCC 61.792 60.000 9.42 0.00 44.01 4.02
312 313 1.098712 TGACCGGTTTTGGTGCTGTC 61.099 55.000 9.42 0.00 44.01 3.51
313 314 0.681564 TTGACCGGTTTTGGTGCTGT 60.682 50.000 9.42 0.00 44.01 4.40
314 315 0.457851 TTTGACCGGTTTTGGTGCTG 59.542 50.000 9.42 0.00 44.01 4.41
315 316 1.134936 GTTTTGACCGGTTTTGGTGCT 60.135 47.619 9.42 0.00 44.01 4.40
316 317 1.282817 GTTTTGACCGGTTTTGGTGC 58.717 50.000 9.42 0.00 44.01 5.01
317 318 1.929230 GGTTTTGACCGGTTTTGGTG 58.071 50.000 9.42 0.00 44.01 4.17
328 329 2.234300 TCTCTGGTCACGGTTTTGAC 57.766 50.000 0.00 0.00 44.53 3.18
329 330 2.367241 TCATCTCTGGTCACGGTTTTGA 59.633 45.455 0.00 0.00 0.00 2.69
330 331 2.766313 TCATCTCTGGTCACGGTTTTG 58.234 47.619 0.00 0.00 0.00 2.44
331 332 3.485463 TTCATCTCTGGTCACGGTTTT 57.515 42.857 0.00 0.00 0.00 2.43
332 333 3.261897 AGATTCATCTCTGGTCACGGTTT 59.738 43.478 0.00 0.00 29.30 3.27
333 334 2.834549 AGATTCATCTCTGGTCACGGTT 59.165 45.455 0.00 0.00 29.30 4.44
334 335 2.461695 AGATTCATCTCTGGTCACGGT 58.538 47.619 0.00 0.00 29.30 4.83
335 336 3.193263 CAAGATTCATCTCTGGTCACGG 58.807 50.000 0.00 0.00 35.76 4.94
336 337 3.193263 CCAAGATTCATCTCTGGTCACG 58.807 50.000 8.66 0.00 35.76 4.35
337 338 2.941720 GCCAAGATTCATCTCTGGTCAC 59.058 50.000 14.42 2.02 37.39 3.67
338 339 2.092753 GGCCAAGATTCATCTCTGGTCA 60.093 50.000 0.00 0.00 38.45 4.02
339 340 2.570135 GGCCAAGATTCATCTCTGGTC 58.430 52.381 0.00 10.85 37.39 4.02
340 341 1.134280 CGGCCAAGATTCATCTCTGGT 60.134 52.381 2.24 0.00 37.39 4.00
341 342 1.590932 CGGCCAAGATTCATCTCTGG 58.409 55.000 2.24 11.04 37.75 3.86
342 343 1.134280 ACCGGCCAAGATTCATCTCTG 60.134 52.381 0.00 0.00 35.76 3.35
343 344 1.207791 ACCGGCCAAGATTCATCTCT 58.792 50.000 0.00 0.00 35.76 3.10
344 345 2.044123 AACCGGCCAAGATTCATCTC 57.956 50.000 0.00 0.00 35.76 2.75
345 346 2.290896 TGAAACCGGCCAAGATTCATCT 60.291 45.455 0.00 0.00 39.22 2.90
346 347 2.091541 TGAAACCGGCCAAGATTCATC 58.908 47.619 0.00 0.00 0.00 2.92
347 348 2.094675 CTGAAACCGGCCAAGATTCAT 58.905 47.619 13.70 0.00 30.39 2.57
348 349 1.202879 ACTGAAACCGGCCAAGATTCA 60.203 47.619 0.00 12.94 0.00 2.57
349 350 1.534729 ACTGAAACCGGCCAAGATTC 58.465 50.000 0.00 4.63 0.00 2.52
350 351 2.039879 ACTACTGAAACCGGCCAAGATT 59.960 45.455 0.00 0.00 0.00 2.40
351 352 1.628846 ACTACTGAAACCGGCCAAGAT 59.371 47.619 0.00 0.00 0.00 2.40
352 353 1.053424 ACTACTGAAACCGGCCAAGA 58.947 50.000 0.00 0.00 0.00 3.02
353 354 1.892209 AACTACTGAAACCGGCCAAG 58.108 50.000 0.00 0.00 0.00 3.61
354 355 3.404899 CTTAACTACTGAAACCGGCCAA 58.595 45.455 0.00 0.00 0.00 4.52
355 356 2.289819 CCTTAACTACTGAAACCGGCCA 60.290 50.000 0.00 0.00 0.00 5.36
356 357 2.353323 CCTTAACTACTGAAACCGGCC 58.647 52.381 0.00 0.00 0.00 6.13
357 358 2.353323 CCCTTAACTACTGAAACCGGC 58.647 52.381 0.00 0.00 0.00 6.13
358 359 2.353323 GCCCTTAACTACTGAAACCGG 58.647 52.381 0.00 0.00 0.00 5.28
359 360 1.997606 CGCCCTTAACTACTGAAACCG 59.002 52.381 0.00 0.00 0.00 4.44
360 361 1.736126 GCGCCCTTAACTACTGAAACC 59.264 52.381 0.00 0.00 0.00 3.27
361 362 2.419667 TGCGCCCTTAACTACTGAAAC 58.580 47.619 4.18 0.00 0.00 2.78
362 363 2.843401 TGCGCCCTTAACTACTGAAA 57.157 45.000 4.18 0.00 0.00 2.69
363 364 2.038033 ACTTGCGCCCTTAACTACTGAA 59.962 45.455 4.18 0.00 0.00 3.02
364 365 1.621814 ACTTGCGCCCTTAACTACTGA 59.378 47.619 4.18 0.00 0.00 3.41
365 366 2.094762 ACTTGCGCCCTTAACTACTG 57.905 50.000 4.18 0.00 0.00 2.74
366 367 2.853235 AACTTGCGCCCTTAACTACT 57.147 45.000 4.18 0.00 0.00 2.57
367 368 3.558829 GGATAACTTGCGCCCTTAACTAC 59.441 47.826 4.18 0.00 0.00 2.73
368 369 3.738899 CGGATAACTTGCGCCCTTAACTA 60.739 47.826 4.18 0.00 30.45 2.24
369 370 2.640184 GGATAACTTGCGCCCTTAACT 58.360 47.619 4.18 0.00 0.00 2.24
370 371 1.329599 CGGATAACTTGCGCCCTTAAC 59.670 52.381 4.18 0.00 30.45 2.01
371 372 1.658994 CGGATAACTTGCGCCCTTAA 58.341 50.000 4.18 0.00 30.45 1.85
372 373 0.179067 CCGGATAACTTGCGCCCTTA 60.179 55.000 4.18 0.00 37.93 2.69
373 374 1.451387 CCGGATAACTTGCGCCCTT 60.451 57.895 4.18 0.00 37.93 3.95
374 375 2.189521 CCGGATAACTTGCGCCCT 59.810 61.111 4.18 0.00 37.93 5.19
375 376 1.310216 AAACCGGATAACTTGCGCCC 61.310 55.000 9.46 0.00 37.93 6.13
376 377 0.524414 AAAACCGGATAACTTGCGCC 59.476 50.000 9.46 0.00 37.93 6.53
377 378 1.198178 TCAAAACCGGATAACTTGCGC 59.802 47.619 9.46 0.00 37.93 6.09
378 379 3.058501 ACTTCAAAACCGGATAACTTGCG 60.059 43.478 9.46 0.00 39.15 4.85
379 380 4.499037 ACTTCAAAACCGGATAACTTGC 57.501 40.909 9.46 0.00 0.00 4.01
380 381 6.067263 TCAACTTCAAAACCGGATAACTTG 57.933 37.500 9.46 0.00 0.00 3.16
381 382 5.240844 CCTCAACTTCAAAACCGGATAACTT 59.759 40.000 9.46 0.00 0.00 2.66
382 383 4.760204 CCTCAACTTCAAAACCGGATAACT 59.240 41.667 9.46 0.00 0.00 2.24
383 384 4.082949 CCCTCAACTTCAAAACCGGATAAC 60.083 45.833 9.46 0.00 0.00 1.89
384 385 4.076394 CCCTCAACTTCAAAACCGGATAA 58.924 43.478 9.46 0.00 0.00 1.75
385 386 3.328343 TCCCTCAACTTCAAAACCGGATA 59.672 43.478 9.46 0.00 0.00 2.59
386 387 2.107552 TCCCTCAACTTCAAAACCGGAT 59.892 45.455 9.46 0.00 0.00 4.18
387 388 1.491332 TCCCTCAACTTCAAAACCGGA 59.509 47.619 9.46 0.00 0.00 5.14
388 389 1.607148 GTCCCTCAACTTCAAAACCGG 59.393 52.381 0.00 0.00 0.00 5.28
389 390 1.607148 GGTCCCTCAACTTCAAAACCG 59.393 52.381 0.00 0.00 0.00 4.44
390 391 2.661718 TGGTCCCTCAACTTCAAAACC 58.338 47.619 0.00 0.00 0.00 3.27
391 392 4.729227 TTTGGTCCCTCAACTTCAAAAC 57.271 40.909 0.00 0.00 0.00 2.43
392 393 5.208121 AGATTTGGTCCCTCAACTTCAAAA 58.792 37.500 0.00 0.00 0.00 2.44
393 394 4.803452 AGATTTGGTCCCTCAACTTCAAA 58.197 39.130 0.00 0.00 0.00 2.69
394 395 4.453480 AGATTTGGTCCCTCAACTTCAA 57.547 40.909 0.00 0.00 0.00 2.69
395 396 4.844085 TCTAGATTTGGTCCCTCAACTTCA 59.156 41.667 0.00 0.00 0.00 3.02
396 397 5.046231 AGTCTAGATTTGGTCCCTCAACTTC 60.046 44.000 0.00 0.00 0.00 3.01
397 398 4.846940 AGTCTAGATTTGGTCCCTCAACTT 59.153 41.667 0.00 0.00 0.00 2.66
398 399 4.430441 AGTCTAGATTTGGTCCCTCAACT 58.570 43.478 0.00 0.00 0.00 3.16
399 400 4.828072 AGTCTAGATTTGGTCCCTCAAC 57.172 45.455 0.00 0.00 0.00 3.18
400 401 4.081642 CGAAGTCTAGATTTGGTCCCTCAA 60.082 45.833 5.06 0.00 0.00 3.02
401 402 3.447586 CGAAGTCTAGATTTGGTCCCTCA 59.552 47.826 5.06 0.00 0.00 3.86
402 403 3.738590 GCGAAGTCTAGATTTGGTCCCTC 60.739 52.174 5.06 0.00 0.00 4.30
403 404 2.168728 GCGAAGTCTAGATTTGGTCCCT 59.831 50.000 5.06 0.00 0.00 4.20
404 405 2.552031 GCGAAGTCTAGATTTGGTCCC 58.448 52.381 5.06 0.00 0.00 4.46
405 406 2.093658 TGGCGAAGTCTAGATTTGGTCC 60.094 50.000 11.16 12.04 0.00 4.46
406 407 3.247006 TGGCGAAGTCTAGATTTGGTC 57.753 47.619 5.06 6.44 0.00 4.02
407 408 3.260884 TCTTGGCGAAGTCTAGATTTGGT 59.739 43.478 5.06 0.00 39.34 3.67
408 409 3.861840 TCTTGGCGAAGTCTAGATTTGG 58.138 45.455 5.06 5.44 39.34 3.28
409 410 6.428385 AATTCTTGGCGAAGTCTAGATTTG 57.572 37.500 5.06 2.16 44.19 2.32
410 411 7.281100 CCTTAATTCTTGGCGAAGTCTAGATTT 59.719 37.037 8.41 0.00 44.19 2.17
411 412 6.763610 CCTTAATTCTTGGCGAAGTCTAGATT 59.236 38.462 8.41 0.00 44.19 2.40
412 413 6.284459 CCTTAATTCTTGGCGAAGTCTAGAT 58.716 40.000 8.41 0.00 44.19 1.98
413 414 5.395324 CCCTTAATTCTTGGCGAAGTCTAGA 60.395 44.000 8.41 0.00 42.97 2.43
414 415 4.811557 CCCTTAATTCTTGGCGAAGTCTAG 59.188 45.833 8.41 1.26 36.06 2.43
415 416 4.468510 TCCCTTAATTCTTGGCGAAGTCTA 59.531 41.667 8.41 0.00 34.56 2.59
416 417 3.263425 TCCCTTAATTCTTGGCGAAGTCT 59.737 43.478 8.41 0.00 34.56 3.24
417 418 3.606687 TCCCTTAATTCTTGGCGAAGTC 58.393 45.455 8.41 0.00 34.56 3.01
418 419 3.713826 TCCCTTAATTCTTGGCGAAGT 57.286 42.857 8.41 0.00 34.56 3.01
419 420 4.199310 TCATCCCTTAATTCTTGGCGAAG 58.801 43.478 1.39 1.39 34.56 3.79
420 421 4.229304 TCATCCCTTAATTCTTGGCGAA 57.771 40.909 0.00 0.00 35.78 4.70
421 422 3.924114 TCATCCCTTAATTCTTGGCGA 57.076 42.857 0.00 0.00 0.00 5.54
422 423 4.981806 TTTCATCCCTTAATTCTTGGCG 57.018 40.909 0.00 0.00 0.00 5.69
423 424 6.286240 ACTTTTCATCCCTTAATTCTTGGC 57.714 37.500 0.00 0.00 0.00 4.52
456 457 9.562583 GCGTCCACATTTTGTATTAATAAAAGA 57.437 29.630 0.00 0.00 30.47 2.52
457 458 8.520258 CGCGTCCACATTTTGTATTAATAAAAG 58.480 33.333 0.00 0.00 30.47 2.27
458 459 8.021973 ACGCGTCCACATTTTGTATTAATAAAA 58.978 29.630 5.58 0.00 31.36 1.52
459 460 7.482113 CACGCGTCCACATTTTGTATTAATAAA 59.518 33.333 9.86 0.00 0.00 1.40
460 461 6.962116 CACGCGTCCACATTTTGTATTAATAA 59.038 34.615 9.86 0.00 0.00 1.40
461 462 6.457122 CCACGCGTCCACATTTTGTATTAATA 60.457 38.462 9.86 0.00 0.00 0.98
462 463 5.328691 CACGCGTCCACATTTTGTATTAAT 58.671 37.500 9.86 0.00 0.00 1.40
463 464 4.378563 CCACGCGTCCACATTTTGTATTAA 60.379 41.667 9.86 0.00 0.00 1.40
464 465 3.125487 CCACGCGTCCACATTTTGTATTA 59.875 43.478 9.86 0.00 0.00 0.98
465 466 2.095466 CCACGCGTCCACATTTTGTATT 60.095 45.455 9.86 0.00 0.00 1.89
466 467 1.466950 CCACGCGTCCACATTTTGTAT 59.533 47.619 9.86 0.00 0.00 2.29
467 468 0.869068 CCACGCGTCCACATTTTGTA 59.131 50.000 9.86 0.00 0.00 2.41
468 469 0.816018 TCCACGCGTCCACATTTTGT 60.816 50.000 9.86 0.00 0.00 2.83
469 470 0.385473 GTCCACGCGTCCACATTTTG 60.385 55.000 9.86 0.00 0.00 2.44
470 471 0.534203 AGTCCACGCGTCCACATTTT 60.534 50.000 9.86 0.00 0.00 1.82
471 472 0.949105 GAGTCCACGCGTCCACATTT 60.949 55.000 9.86 0.00 0.00 2.32
472 473 1.374252 GAGTCCACGCGTCCACATT 60.374 57.895 9.86 0.00 0.00 2.71
473 474 2.214181 GAGAGTCCACGCGTCCACAT 62.214 60.000 9.86 1.40 0.00 3.21
474 475 2.910479 AGAGTCCACGCGTCCACA 60.910 61.111 9.86 0.00 0.00 4.17
475 476 2.126424 GAGAGTCCACGCGTCCAC 60.126 66.667 9.86 9.15 0.00 4.02
476 477 3.733960 CGAGAGTCCACGCGTCCA 61.734 66.667 9.86 0.00 0.00 4.02
477 478 3.735029 ACGAGAGTCCACGCGTCC 61.735 66.667 9.86 0.00 44.19 4.79
488 489 1.738099 CCACGAAGGCCAACGAGAG 60.738 63.158 24.10 14.29 0.00 3.20
489 490 2.342279 CCACGAAGGCCAACGAGA 59.658 61.111 24.10 0.00 0.00 4.04
502 503 2.224549 TCAAACATTAAAGTCGGCCACG 59.775 45.455 2.24 0.00 42.74 4.94
503 504 3.907894 TCAAACATTAAAGTCGGCCAC 57.092 42.857 2.24 0.00 0.00 5.01
504 505 6.576662 TTAATCAAACATTAAAGTCGGCCA 57.423 33.333 2.24 0.00 0.00 5.36
505 506 6.019881 GCATTAATCAAACATTAAAGTCGGCC 60.020 38.462 0.00 0.00 0.00 6.13
506 507 6.529829 TGCATTAATCAAACATTAAAGTCGGC 59.470 34.615 0.00 0.00 0.00 5.54
507 508 8.533965 CATGCATTAATCAAACATTAAAGTCGG 58.466 33.333 0.00 0.00 0.00 4.79
508 509 9.075519 ACATGCATTAATCAAACATTAAAGTCG 57.924 29.630 0.00 0.00 0.00 4.18
536 537 0.377554 TTTTCACGGCGCGAGAAAAA 59.622 45.000 23.69 17.60 46.62 1.94
537 538 3.720531 TTTCACGGCGCGAGAAAA 58.279 50.000 12.10 6.75 41.58 2.29
538 539 0.589223 ATTTTTCACGGCGCGAGAAA 59.411 45.000 12.10 14.59 42.43 2.52
539 540 0.110419 CATTTTTCACGGCGCGAGAA 60.110 50.000 12.10 6.35 35.03 2.87
540 541 1.495509 CATTTTTCACGGCGCGAGA 59.504 52.632 12.10 0.00 0.00 4.04
541 542 1.511887 CCATTTTTCACGGCGCGAG 60.512 57.895 12.10 5.13 0.00 5.03
542 543 2.558821 CCATTTTTCACGGCGCGA 59.441 55.556 12.10 0.00 0.00 5.87
543 544 2.503809 CCCATTTTTCACGGCGCG 60.504 61.111 6.90 0.00 0.00 6.86
544 545 2.809174 GCCCATTTTTCACGGCGC 60.809 61.111 6.90 0.00 0.00 6.53
545 546 2.126110 GGCCCATTTTTCACGGCG 60.126 61.111 4.80 4.80 42.59 6.46
546 547 2.126110 CGGCCCATTTTTCACGGC 60.126 61.111 0.00 0.00 40.85 5.68
547 548 2.571231 CCGGCCCATTTTTCACGG 59.429 61.111 0.00 0.00 35.01 4.94
548 549 2.571231 CCCGGCCCATTTTTCACG 59.429 61.111 0.00 0.00 0.00 4.35
549 550 0.968393 TAGCCCGGCCCATTTTTCAC 60.968 55.000 5.55 0.00 0.00 3.18
550 551 0.682855 CTAGCCCGGCCCATTTTTCA 60.683 55.000 5.55 0.00 0.00 2.69
551 552 0.683179 ACTAGCCCGGCCCATTTTTC 60.683 55.000 5.55 0.00 0.00 2.29
552 553 0.970427 CACTAGCCCGGCCCATTTTT 60.970 55.000 5.55 0.00 0.00 1.94
553 554 1.379843 CACTAGCCCGGCCCATTTT 60.380 57.895 5.55 0.00 0.00 1.82
554 555 2.150014 AACACTAGCCCGGCCCATTT 62.150 55.000 5.55 0.00 0.00 2.32
555 556 2.612493 AACACTAGCCCGGCCCATT 61.612 57.895 5.55 0.00 0.00 3.16
556 557 3.015145 AACACTAGCCCGGCCCAT 61.015 61.111 5.55 0.00 0.00 4.00
557 558 4.028490 CAACACTAGCCCGGCCCA 62.028 66.667 5.55 0.00 0.00 5.36
558 559 4.029809 ACAACACTAGCCCGGCCC 62.030 66.667 5.55 0.00 0.00 5.80
559 560 2.746277 CACAACACTAGCCCGGCC 60.746 66.667 5.55 0.00 0.00 6.13
560 561 3.431725 GCACAACACTAGCCCGGC 61.432 66.667 0.00 0.00 0.00 6.13
561 562 2.031919 TGCACAACACTAGCCCGG 59.968 61.111 0.00 0.00 0.00 5.73
562 563 3.253955 GTGCACAACACTAGCCCG 58.746 61.111 13.17 0.00 46.41 6.13
578 579 3.592856 TATTTGGGTCGGCGCGTGT 62.593 57.895 8.43 0.00 0.00 4.49
579 580 2.816083 TATTTGGGTCGGCGCGTG 60.816 61.111 8.43 0.00 0.00 5.34
580 581 2.816520 GTATTTGGGTCGGCGCGT 60.817 61.111 8.43 0.00 0.00 6.01
581 582 3.920553 CGTATTTGGGTCGGCGCG 61.921 66.667 0.00 0.00 0.00 6.86
582 583 1.637478 TTTCGTATTTGGGTCGGCGC 61.637 55.000 0.00 0.00 0.00 6.53
583 584 0.372334 CTTTCGTATTTGGGTCGGCG 59.628 55.000 0.00 0.00 0.00 6.46
584 585 0.098200 GCTTTCGTATTTGGGTCGGC 59.902 55.000 0.00 0.00 0.00 5.54
585 586 0.372334 CGCTTTCGTATTTGGGTCGG 59.628 55.000 0.00 0.00 0.00 4.79
586 587 0.372334 CCGCTTTCGTATTTGGGTCG 59.628 55.000 0.00 0.00 0.00 4.79
587 588 1.729284 TCCGCTTTCGTATTTGGGTC 58.271 50.000 0.00 0.00 0.00 4.46
588 589 2.413310 ATCCGCTTTCGTATTTGGGT 57.587 45.000 0.00 0.00 0.00 4.51
589 590 4.377022 CGAATATCCGCTTTCGTATTTGGG 60.377 45.833 0.00 0.00 39.77 4.12
590 591 4.698276 CGAATATCCGCTTTCGTATTTGG 58.302 43.478 0.00 0.00 39.77 3.28
598 599 3.187700 ACAGACACGAATATCCGCTTTC 58.812 45.455 0.00 0.00 0.00 2.62
599 600 3.119101 AGACAGACACGAATATCCGCTTT 60.119 43.478 0.00 0.00 0.00 3.51
600 601 2.427453 AGACAGACACGAATATCCGCTT 59.573 45.455 0.00 0.00 0.00 4.68
601 602 2.025155 AGACAGACACGAATATCCGCT 58.975 47.619 0.00 0.00 0.00 5.52
602 603 2.120232 CAGACAGACACGAATATCCGC 58.880 52.381 0.00 0.00 0.00 5.54
603 604 2.732366 CCAGACAGACACGAATATCCG 58.268 52.381 0.00 0.00 0.00 4.18
604 605 2.474816 GCCAGACAGACACGAATATCC 58.525 52.381 0.00 0.00 0.00 2.59
605 606 2.474816 GGCCAGACAGACACGAATATC 58.525 52.381 0.00 0.00 0.00 1.63
606 607 1.202417 CGGCCAGACAGACACGAATAT 60.202 52.381 2.24 0.00 0.00 1.28
607 608 0.172578 CGGCCAGACAGACACGAATA 59.827 55.000 2.24 0.00 0.00 1.75
608 609 1.079819 CGGCCAGACAGACACGAAT 60.080 57.895 2.24 0.00 0.00 3.34
609 610 2.197605 TCGGCCAGACAGACACGAA 61.198 57.895 2.24 0.00 0.00 3.85
610 611 2.596338 TCGGCCAGACAGACACGA 60.596 61.111 2.24 0.00 0.00 4.35
619 620 3.646715 CCCTTTGGGTCGGCCAGA 61.647 66.667 9.07 0.00 38.25 3.86
620 621 1.632018 TATCCCTTTGGGTCGGCCAG 61.632 60.000 9.07 0.00 44.74 4.85
621 622 1.208844 TTATCCCTTTGGGTCGGCCA 61.209 55.000 9.07 0.00 44.74 5.36
622 623 0.033894 TTTATCCCTTTGGGTCGGCC 60.034 55.000 0.00 0.00 44.74 6.13
623 624 2.067365 ATTTATCCCTTTGGGTCGGC 57.933 50.000 2.25 0.00 44.74 5.54
624 625 3.146847 GCTATTTATCCCTTTGGGTCGG 58.853 50.000 2.25 0.00 44.74 4.79
625 626 2.806244 CGCTATTTATCCCTTTGGGTCG 59.194 50.000 2.25 0.00 44.74 4.79
626 627 4.081322 TCGCTATTTATCCCTTTGGGTC 57.919 45.455 2.25 0.00 44.74 4.46
627 628 4.204799 GTTCGCTATTTATCCCTTTGGGT 58.795 43.478 2.25 0.00 44.74 4.51
628 629 4.204012 TGTTCGCTATTTATCCCTTTGGG 58.796 43.478 0.00 0.00 46.11 4.12
629 630 5.828299 TTGTTCGCTATTTATCCCTTTGG 57.172 39.130 0.00 0.00 0.00 3.28
630 631 7.973388 TGATTTTGTTCGCTATTTATCCCTTTG 59.027 33.333 0.00 0.00 0.00 2.77
631 632 7.973944 GTGATTTTGTTCGCTATTTATCCCTTT 59.026 33.333 0.00 0.00 0.00 3.11
632 633 7.416326 GGTGATTTTGTTCGCTATTTATCCCTT 60.416 37.037 0.00 0.00 0.00 3.95
633 634 6.039382 GGTGATTTTGTTCGCTATTTATCCCT 59.961 38.462 0.00 0.00 0.00 4.20
634 635 6.183360 TGGTGATTTTGTTCGCTATTTATCCC 60.183 38.462 0.00 0.00 0.00 3.85
635 636 6.791303 TGGTGATTTTGTTCGCTATTTATCC 58.209 36.000 0.00 0.00 0.00 2.59
636 637 7.591426 GGATGGTGATTTTGTTCGCTATTTATC 59.409 37.037 0.00 0.00 28.83 1.75
637 638 7.425606 GGATGGTGATTTTGTTCGCTATTTAT 58.574 34.615 0.00 0.00 28.83 1.40
638 639 6.457663 CGGATGGTGATTTTGTTCGCTATTTA 60.458 38.462 0.00 0.00 28.83 1.40
639 640 5.650543 GGATGGTGATTTTGTTCGCTATTT 58.349 37.500 0.00 0.00 28.83 1.40
640 641 4.201910 CGGATGGTGATTTTGTTCGCTATT 60.202 41.667 0.00 0.00 28.83 1.73
641 642 3.312421 CGGATGGTGATTTTGTTCGCTAT 59.688 43.478 0.00 0.00 31.01 2.97
642 643 2.675844 CGGATGGTGATTTTGTTCGCTA 59.324 45.455 0.00 0.00 0.00 4.26
643 644 1.468520 CGGATGGTGATTTTGTTCGCT 59.531 47.619 0.00 0.00 0.00 4.93
644 645 1.199097 ACGGATGGTGATTTTGTTCGC 59.801 47.619 0.00 0.00 0.00 4.70
645 646 3.552604 AACGGATGGTGATTTTGTTCG 57.447 42.857 0.00 0.00 0.00 3.95
646 647 3.987220 CCAAACGGATGGTGATTTTGTTC 59.013 43.478 0.84 0.00 35.65 3.18
647 648 3.244044 CCCAAACGGATGGTGATTTTGTT 60.244 43.478 7.81 0.00 38.91 2.83
648 649 2.298729 CCCAAACGGATGGTGATTTTGT 59.701 45.455 7.81 0.00 38.91 2.83
649 650 2.298729 ACCCAAACGGATGGTGATTTTG 59.701 45.455 7.81 0.00 38.91 2.44
650 651 2.560981 GACCCAAACGGATGGTGATTTT 59.439 45.455 7.81 0.00 38.91 1.82
651 652 2.167662 GACCCAAACGGATGGTGATTT 58.832 47.619 7.81 0.00 38.91 2.17
652 653 1.834188 GACCCAAACGGATGGTGATT 58.166 50.000 7.81 0.00 38.91 2.57
653 654 0.392461 CGACCCAAACGGATGGTGAT 60.392 55.000 7.81 0.00 38.91 3.06
654 655 1.004320 CGACCCAAACGGATGGTGA 60.004 57.895 7.81 0.00 38.91 4.02
655 656 3.573558 CGACCCAAACGGATGGTG 58.426 61.111 7.81 2.81 38.91 4.17
662 663 2.280321 AACGGACCGACCCAAACG 60.280 61.111 23.38 0.00 34.64 3.60
663 664 2.255881 CCAACGGACCGACCCAAAC 61.256 63.158 23.38 0.00 34.64 2.93
664 665 2.111460 CCAACGGACCGACCCAAA 59.889 61.111 23.38 0.00 34.64 3.28
665 666 2.843411 TCCAACGGACCGACCCAA 60.843 61.111 23.38 0.00 34.64 4.12
666 667 3.307906 CTCCAACGGACCGACCCA 61.308 66.667 23.38 0.27 34.64 4.51
667 668 1.535204 TAACTCCAACGGACCGACCC 61.535 60.000 23.38 0.00 34.64 4.46
668 669 0.389037 GTAACTCCAACGGACCGACC 60.389 60.000 23.38 0.00 0.00 4.79
669 670 0.600057 AGTAACTCCAACGGACCGAC 59.400 55.000 23.38 5.35 0.00 4.79
670 671 0.883833 GAGTAACTCCAACGGACCGA 59.116 55.000 23.38 0.00 0.00 4.69
671 672 0.886563 AGAGTAACTCCAACGGACCG 59.113 55.000 13.61 13.61 0.00 4.79
672 673 3.367806 GGTAAGAGTAACTCCAACGGACC 60.368 52.174 0.00 0.00 0.00 4.46
673 674 3.367806 GGGTAAGAGTAACTCCAACGGAC 60.368 52.174 0.00 0.00 0.00 4.79
674 675 2.827921 GGGTAAGAGTAACTCCAACGGA 59.172 50.000 0.00 0.00 0.00 4.69
675 676 2.416431 CGGGTAAGAGTAACTCCAACGG 60.416 54.545 0.00 0.00 0.00 4.44
676 677 2.229784 ACGGGTAAGAGTAACTCCAACG 59.770 50.000 0.00 0.00 0.00 4.10
677 678 3.949842 ACGGGTAAGAGTAACTCCAAC 57.050 47.619 0.00 0.00 0.00 3.77
678 679 4.344679 TGAAACGGGTAAGAGTAACTCCAA 59.655 41.667 0.00 0.00 0.00 3.53
679 680 3.896888 TGAAACGGGTAAGAGTAACTCCA 59.103 43.478 0.00 0.00 0.00 3.86
680 681 4.525912 TGAAACGGGTAAGAGTAACTCC 57.474 45.455 0.00 0.00 0.00 3.85
681 682 7.092716 TGTTATGAAACGGGTAAGAGTAACTC 58.907 38.462 0.00 0.00 38.53 3.01
682 683 6.996509 TGTTATGAAACGGGTAAGAGTAACT 58.003 36.000 0.00 0.00 38.53 2.24
683 684 7.092716 TCTGTTATGAAACGGGTAAGAGTAAC 58.907 38.462 0.00 0.00 41.55 2.50
684 685 7.230849 TCTGTTATGAAACGGGTAAGAGTAA 57.769 36.000 0.00 0.00 41.55 2.24
685 686 6.839124 TCTGTTATGAAACGGGTAAGAGTA 57.161 37.500 0.00 0.00 41.55 2.59
686 687 5.733620 TCTGTTATGAAACGGGTAAGAGT 57.266 39.130 0.00 0.00 41.55 3.24
687 688 6.164176 ACTTCTGTTATGAAACGGGTAAGAG 58.836 40.000 5.86 0.00 41.55 2.85
688 689 6.014840 AGACTTCTGTTATGAAACGGGTAAGA 60.015 38.462 5.86 0.00 41.55 2.10
689 690 6.164176 AGACTTCTGTTATGAAACGGGTAAG 58.836 40.000 0.00 0.00 41.55 2.34
690 691 6.105397 AGACTTCTGTTATGAAACGGGTAA 57.895 37.500 0.00 0.00 41.55 2.85
691 692 5.733620 AGACTTCTGTTATGAAACGGGTA 57.266 39.130 0.00 0.00 41.55 3.69
692 693 4.618920 AGACTTCTGTTATGAAACGGGT 57.381 40.909 0.00 0.00 41.55 5.28
693 694 4.868734 GGTAGACTTCTGTTATGAAACGGG 59.131 45.833 0.00 0.00 41.55 5.28
694 695 5.475719 TGGTAGACTTCTGTTATGAAACGG 58.524 41.667 0.00 0.00 42.43 4.44
704 705 8.103305 ACATTCATTACATTGGTAGACTTCTGT 58.897 33.333 0.00 0.00 0.00 3.41
705 706 8.498054 ACATTCATTACATTGGTAGACTTCTG 57.502 34.615 0.00 0.00 0.00 3.02
724 725 5.062528 TCACTGTCATGCTTACAACATTCA 58.937 37.500 0.00 0.00 0.00 2.57
725 726 5.180117 ACTCACTGTCATGCTTACAACATTC 59.820 40.000 0.00 0.00 0.00 2.67
743 744 3.425359 CGTTATACACCGACGAACTCACT 60.425 47.826 0.00 0.00 38.99 3.41
751 752 1.905312 CGTGCGTTATACACCGACG 59.095 57.895 0.00 0.00 39.61 5.12
806 807 5.105063 CGAATTCTGATAGTGACAAGCTCA 58.895 41.667 3.52 0.00 0.00 4.26
811 812 4.157105 TCCGTCGAATTCTGATAGTGACAA 59.843 41.667 3.52 0.00 0.00 3.18
812 813 3.692593 TCCGTCGAATTCTGATAGTGACA 59.307 43.478 3.52 0.00 0.00 3.58
813 814 4.283678 CTCCGTCGAATTCTGATAGTGAC 58.716 47.826 3.52 0.98 0.00 3.67
814 815 3.243101 GCTCCGTCGAATTCTGATAGTGA 60.243 47.826 3.52 0.00 0.00 3.41
815 816 3.046390 GCTCCGTCGAATTCTGATAGTG 58.954 50.000 3.52 2.02 0.00 2.74
816 817 2.952978 AGCTCCGTCGAATTCTGATAGT 59.047 45.455 3.52 0.00 0.00 2.12
819 820 1.268794 CGAGCTCCGTCGAATTCTGAT 60.269 52.381 8.47 0.00 42.85 2.90
824 825 2.202756 GGCGAGCTCCGTCGAATT 60.203 61.111 8.47 0.00 42.85 2.17
829 830 2.413765 CTTAGGGCGAGCTCCGTC 59.586 66.667 8.47 4.83 43.26 4.79
919 933 3.508648 AACAACAACACGCGTATGTAC 57.491 42.857 24.53 0.00 30.75 2.90
951 983 1.184431 TGGTATCGCCGTTCCTTGTA 58.816 50.000 0.00 0.00 41.21 2.41
958 990 1.445871 GAACCTTTGGTATCGCCGTT 58.554 50.000 0.00 0.00 41.21 4.44
962 994 1.712018 GCCGGAACCTTTGGTATCGC 61.712 60.000 5.05 0.00 33.12 4.58
966 998 1.611519 CTTTGCCGGAACCTTTGGTA 58.388 50.000 5.05 0.00 33.12 3.25
971 1003 1.603739 GCTCCTTTGCCGGAACCTT 60.604 57.895 5.05 0.00 31.44 3.50
1033 1071 1.029947 TGCATCTCAGCTGCATGGTG 61.030 55.000 20.78 15.26 44.30 4.17
1043 1081 1.211212 TGGAGTTGGGATGCATCTCAG 59.789 52.381 27.41 0.00 38.75 3.35
1175 1257 6.017852 GGCTGGGAAGAGATAGAAATTAAACG 60.018 42.308 0.00 0.00 0.00 3.60
1274 1368 2.124570 GCTCATGTCCCACGGCAT 60.125 61.111 0.00 0.00 0.00 4.40
1275 1369 3.189376 TTGCTCATGTCCCACGGCA 62.189 57.895 0.00 0.00 0.00 5.69
1276 1370 2.359850 TTGCTCATGTCCCACGGC 60.360 61.111 0.00 0.00 0.00 5.68
1501 1610 3.137385 AACCCTTGAGCTGCTGGCA 62.137 57.895 7.01 0.00 44.79 4.92
1588 1697 9.712359 GCCGAAAGTAAACGAGATTTTATATTT 57.288 29.630 0.00 0.00 0.00 1.40
1634 1743 1.345741 TCAATCAGAGATGCCCCGATC 59.654 52.381 0.00 0.00 0.00 3.69
1670 1779 8.806429 AATGTGTTTCATGGATATAGACAACA 57.194 30.769 0.00 0.00 36.81 3.33
1704 1813 5.591067 CGTATTTGGCTCCCCTGTATTTTTA 59.409 40.000 0.00 0.00 0.00 1.52
1751 1861 4.891168 TCTCCAGTGTAGGCATATACGAAA 59.109 41.667 0.00 0.00 0.00 3.46
1752 1862 4.277672 GTCTCCAGTGTAGGCATATACGAA 59.722 45.833 0.00 0.00 0.00 3.85
1809 1919 4.024048 GGAAGTGACGATTCTTGCTTTGAA 60.024 41.667 0.00 0.00 0.00 2.69
1824 1934 1.265365 GAGCTGCAAGTTGGAAGTGAC 59.735 52.381 4.75 0.00 35.30 3.67
1827 1937 1.133976 AGTGAGCTGCAAGTTGGAAGT 60.134 47.619 4.75 0.00 35.30 3.01
1843 1953 3.772572 TCTAAACATGGGAATCGGAGTGA 59.227 43.478 0.00 0.00 0.00 3.41
1869 1979 6.701340 CGAGATGTGAATAGATGGGGATTAA 58.299 40.000 0.00 0.00 0.00 1.40
1870 1980 5.337571 GCGAGATGTGAATAGATGGGGATTA 60.338 44.000 0.00 0.00 0.00 1.75
1909 3616 1.542544 CGTACGTTCTTGATCCGGAC 58.457 55.000 6.12 0.90 32.15 4.79
1924 3632 1.333791 GGCTGTTGACTGTTTGCGTAC 60.334 52.381 0.00 0.00 0.00 3.67
1932 3640 1.542030 CGTAGAGAGGCTGTTGACTGT 59.458 52.381 0.00 0.00 0.00 3.55
1952 3660 1.153469 GTGGAGGAGCTAGCTGTGC 60.153 63.158 24.99 14.89 0.00 4.57
2009 3717 0.108329 AAGCCTACATGTTCGTCGGG 60.108 55.000 2.30 0.00 0.00 5.14
2023 3731 1.684049 CCCTCCTCGTCAGAAGCCT 60.684 63.158 0.00 0.00 0.00 4.58
2139 3850 3.154473 CGAAGCCATCCTCCCCGA 61.154 66.667 0.00 0.00 0.00 5.14
2346 6211 5.151297 TCCCTTTGCCAAATCTCAATTTC 57.849 39.130 0.00 0.00 32.69 2.17
2423 6288 6.295719 TCTAATCTGGAGACCCACTTTTAC 57.704 41.667 0.00 0.00 37.58 2.01
2426 6291 6.903534 TCTAATCTAATCTGGAGACCCACTTT 59.096 38.462 0.00 0.00 37.58 2.66
2443 6308 4.079970 CTGGGTCGTAGGCATCTAATCTA 58.920 47.826 0.00 0.00 0.00 1.98
2444 6309 2.894126 CTGGGTCGTAGGCATCTAATCT 59.106 50.000 0.00 0.00 0.00 2.40
2445 6310 2.028930 CCTGGGTCGTAGGCATCTAATC 60.029 54.545 0.00 0.00 0.00 1.75
2446 6311 1.971357 CCTGGGTCGTAGGCATCTAAT 59.029 52.381 0.00 0.00 0.00 1.73
2447 6312 1.342674 ACCTGGGTCGTAGGCATCTAA 60.343 52.381 0.00 0.00 38.96 2.10
2448 6313 0.260816 ACCTGGGTCGTAGGCATCTA 59.739 55.000 0.00 0.00 38.96 1.98
2449 6314 1.001760 ACCTGGGTCGTAGGCATCT 59.998 57.895 0.00 0.00 38.96 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.