Multiple sequence alignment - TraesCS7A01G165700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G165700 chr7A 100.000 2882 0 0 1 2882 121396941 121399822 0.000000e+00 5323.0
1 TraesCS7A01G165700 chr7A 91.812 977 71 9 1907 2879 162762370 162763341 0.000000e+00 1352.0
2 TraesCS7A01G165700 chr4A 96.189 971 34 3 1908 2876 555797974 555797005 0.000000e+00 1585.0
3 TraesCS7A01G165700 chr4A 95.243 967 42 4 1913 2876 702637774 702638739 0.000000e+00 1528.0
4 TraesCS7A01G165700 chr4A 91.975 972 68 10 1909 2876 21046565 21045600 0.000000e+00 1354.0
5 TraesCS7A01G165700 chr6A 96.273 966 34 2 1913 2876 7713830 7712865 0.000000e+00 1583.0
6 TraesCS7A01G165700 chr6B 96.174 967 31 3 1913 2876 132935690 132936653 0.000000e+00 1576.0
7 TraesCS7A01G165700 chr6B 95.277 974 38 5 1909 2876 688775685 688774714 0.000000e+00 1537.0
8 TraesCS7A01G165700 chr6B 91.743 981 74 7 1905 2881 96678126 96677149 0.000000e+00 1356.0
9 TraesCS7A01G165700 chr1A 92.221 977 70 6 1908 2882 285993649 285994621 0.000000e+00 1378.0
10 TraesCS7A01G165700 chr7B 88.878 1025 68 19 1 1001 77429006 77430008 0.000000e+00 1219.0
11 TraesCS7A01G165700 chr7B 92.288 765 29 11 1158 1909 77432085 77432832 0.000000e+00 1059.0
12 TraesCS7A01G165700 chr7B 95.413 109 5 0 1046 1154 77431942 77432050 1.060000e-39 174.0
13 TraesCS7A01G165700 chr7B 98.438 64 1 0 993 1056 77430159 77430222 2.350000e-21 113.0
14 TraesCS7A01G165700 chr7D 93.343 661 20 5 1243 1897 117245068 117245710 0.000000e+00 955.0
15 TraesCS7A01G165700 chr7D 86.163 860 52 30 450 1251 117242233 117243083 0.000000e+00 867.0
16 TraesCS7A01G165700 chr7D 83.537 164 17 7 451 606 64007306 64007145 8.320000e-31 145.0
17 TraesCS7A01G165700 chr4B 77.863 786 115 35 975 1732 613754715 613753961 1.590000e-117 433.0
18 TraesCS7A01G165700 chr5A 79.300 657 71 35 1222 1866 663379368 663379971 1.610000e-107 399.0
19 TraesCS7A01G165700 chr5A 79.592 196 36 4 1236 1429 436089407 436089600 1.390000e-28 137.0
20 TraesCS7A01G165700 chr4D 80.000 520 71 19 1222 1732 483369420 483369915 1.270000e-93 353.0
21 TraesCS7A01G165700 chr4D 93.333 225 15 0 1222 1446 483430821 483431045 1.650000e-87 333.0
22 TraesCS7A01G165700 chr4D 77.583 513 89 18 1224 1732 381404267 381403777 1.310000e-73 287.0
23 TraesCS7A01G165700 chr4D 94.915 59 3 0 1592 1650 483431155 483431213 3.060000e-15 93.5
24 TraesCS7A01G165700 chr5B 78.571 196 38 4 1236 1429 391144969 391145162 3.010000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G165700 chr7A 121396941 121399822 2881 False 5323.00 5323 100.00000 1 2882 1 chr7A.!!$F1 2881
1 TraesCS7A01G165700 chr7A 162762370 162763341 971 False 1352.00 1352 91.81200 1907 2879 1 chr7A.!!$F2 972
2 TraesCS7A01G165700 chr4A 555797005 555797974 969 True 1585.00 1585 96.18900 1908 2876 1 chr4A.!!$R2 968
3 TraesCS7A01G165700 chr4A 702637774 702638739 965 False 1528.00 1528 95.24300 1913 2876 1 chr4A.!!$F1 963
4 TraesCS7A01G165700 chr4A 21045600 21046565 965 True 1354.00 1354 91.97500 1909 2876 1 chr4A.!!$R1 967
5 TraesCS7A01G165700 chr6A 7712865 7713830 965 True 1583.00 1583 96.27300 1913 2876 1 chr6A.!!$R1 963
6 TraesCS7A01G165700 chr6B 132935690 132936653 963 False 1576.00 1576 96.17400 1913 2876 1 chr6B.!!$F1 963
7 TraesCS7A01G165700 chr6B 688774714 688775685 971 True 1537.00 1537 95.27700 1909 2876 1 chr6B.!!$R2 967
8 TraesCS7A01G165700 chr6B 96677149 96678126 977 True 1356.00 1356 91.74300 1905 2881 1 chr6B.!!$R1 976
9 TraesCS7A01G165700 chr1A 285993649 285994621 972 False 1378.00 1378 92.22100 1908 2882 1 chr1A.!!$F1 974
10 TraesCS7A01G165700 chr7B 77429006 77432832 3826 False 641.25 1219 93.75425 1 1909 4 chr7B.!!$F1 1908
11 TraesCS7A01G165700 chr7D 117242233 117245710 3477 False 911.00 955 89.75300 450 1897 2 chr7D.!!$F1 1447
12 TraesCS7A01G165700 chr4B 613753961 613754715 754 True 433.00 433 77.86300 975 1732 1 chr4B.!!$R1 757
13 TraesCS7A01G165700 chr5A 663379368 663379971 603 False 399.00 399 79.30000 1222 1866 1 chr5A.!!$F2 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.465642 GGCCCGCTTTTAGCCTACAT 60.466 55.0 0.00 0.0 43.62 2.29 F
94 97 1.435256 ACCCTCAAGTGGTGCTTAGT 58.565 50.0 0.00 0.0 35.27 2.24 F
736 755 2.163818 TTTGGACGGATATCATCGCC 57.836 50.0 4.83 6.5 0.00 5.54 F
843 864 3.010420 GGTCCATCTAACACTTTGAGGC 58.990 50.0 0.00 0.0 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 5337 1.294041 TGATGGACCACCTATTGCCA 58.706 50.000 0.00 0.0 37.04 4.92 R
1353 5343 1.744320 CGGCGATGATGGACCACCTA 61.744 60.000 0.00 0.0 37.04 3.08 R
1731 5781 2.098680 GACGACGTCTCCGAGCTG 59.901 66.667 20.52 0.0 37.88 4.24 R
2168 6227 2.772515 GGACACTTGTATCCTAGGCCTT 59.227 50.000 12.58 0.0 31.75 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.132453 GAAGTAAACTGATTGGCCCGC 59.868 52.381 0.00 0.00 0.00 6.13
37 38 0.465642 GGCCCGCTTTTAGCCTACAT 60.466 55.000 0.00 0.00 43.62 2.29
40 41 2.767505 CCCGCTTTTAGCCTACATAGG 58.232 52.381 0.09 0.09 46.42 2.57
41 42 2.550208 CCCGCTTTTAGCCTACATAGGG 60.550 54.545 7.07 0.00 43.82 3.53
51 52 2.709397 GCCTACATAGGGAAGGGCTTTA 59.291 50.000 7.07 0.00 43.82 1.85
61 62 4.412528 AGGGAAGGGCTTTATTATTCTCGT 59.587 41.667 0.00 0.00 0.00 4.18
94 97 1.435256 ACCCTCAAGTGGTGCTTAGT 58.565 50.000 0.00 0.00 35.27 2.24
97 100 2.814336 CCCTCAAGTGGTGCTTAGTTTC 59.186 50.000 0.00 0.00 35.27 2.78
98 101 2.480419 CCTCAAGTGGTGCTTAGTTTCG 59.520 50.000 0.00 0.00 35.27 3.46
234 238 5.938125 AGATAGTCATTAACTGTGCGGTTTT 59.062 36.000 1.46 0.00 39.11 2.43
253 257 6.403214 CGGTTTTTCGACGTTATTTAGAATCG 59.597 38.462 0.00 0.00 0.00 3.34
256 260 9.891535 GTTTTTCGACGTTATTTAGAATCGTAT 57.108 29.630 0.00 0.00 34.93 3.06
274 278 5.588240 TCGTATGTAGCATAGTTCAAGGTG 58.412 41.667 0.00 0.00 0.00 4.00
277 281 6.976349 CGTATGTAGCATAGTTCAAGGTGTTA 59.024 38.462 0.00 0.00 0.00 2.41
304 308 6.872920 TGGGACAATACATGAAAAATAAGGC 58.127 36.000 0.00 0.00 31.92 4.35
305 309 6.127196 TGGGACAATACATGAAAAATAAGGCC 60.127 38.462 0.00 0.00 31.92 5.19
306 310 6.127196 GGGACAATACATGAAAAATAAGGCCA 60.127 38.462 5.01 0.00 0.00 5.36
307 311 7.327214 GGACAATACATGAAAAATAAGGCCAA 58.673 34.615 5.01 0.00 0.00 4.52
308 312 7.277760 GGACAATACATGAAAAATAAGGCCAAC 59.722 37.037 5.01 0.00 0.00 3.77
309 313 6.811170 ACAATACATGAAAAATAAGGCCAACG 59.189 34.615 5.01 0.00 0.00 4.10
310 314 6.767524 ATACATGAAAAATAAGGCCAACGA 57.232 33.333 5.01 0.00 0.00 3.85
311 315 5.659440 ACATGAAAAATAAGGCCAACGAT 57.341 34.783 5.01 0.00 0.00 3.73
312 316 6.036577 ACATGAAAAATAAGGCCAACGATT 57.963 33.333 5.01 0.00 0.00 3.34
329 333 5.713822 ACGATTCGCCTAAATCTTAACAC 57.286 39.130 5.86 0.00 34.19 3.32
338 342 5.813157 GCCTAAATCTTAACACAGAGTCTCC 59.187 44.000 0.00 0.00 0.00 3.71
339 343 6.351456 GCCTAAATCTTAACACAGAGTCTCCT 60.351 42.308 0.00 0.00 0.00 3.69
356 360 7.067008 AGAGTCTCCTTCGATCTTAAAGAAGAG 59.933 40.741 8.39 4.88 44.90 2.85
357 361 6.661805 AGTCTCCTTCGATCTTAAAGAAGAGT 59.338 38.462 8.39 1.08 44.90 3.24
376 380 5.482908 AGAGTGTCGATTGCATTTTCTACT 58.517 37.500 0.00 0.00 0.00 2.57
379 383 6.970484 AGTGTCGATTGCATTTTCTACTTTT 58.030 32.000 0.00 0.00 0.00 2.27
400 404 9.840427 ACTTTTCACGTCAAAAATTATCCTATG 57.160 29.630 0.00 0.00 0.00 2.23
402 406 9.619316 TTTTCACGTCAAAAATTATCCTATGTG 57.381 29.630 0.00 0.00 0.00 3.21
416 420 6.597832 ATCCTATGTGGTAGACTATGAAGC 57.402 41.667 0.00 0.00 37.07 3.86
419 423 5.536538 CCTATGTGGTAGACTATGAAGCTGA 59.463 44.000 0.00 0.00 31.71 4.26
458 463 4.584638 TGCCCTTACAATAAGGATGTGT 57.415 40.909 14.95 0.00 39.81 3.72
469 474 6.127310 ACAATAAGGATGTGTCTAGGTCTCAC 60.127 42.308 0.00 0.00 0.00 3.51
478 483 3.244457 TGTCTAGGTCTCACTCGACTGAA 60.244 47.826 0.00 0.00 35.07 3.02
485 490 6.702329 AGGTCTCACTCGACTGAAATTTAAT 58.298 36.000 0.00 0.00 34.38 1.40
516 524 9.500785 TCTCAATCAAGTGACATAACATACAAA 57.499 29.630 0.00 0.00 0.00 2.83
572 582 5.069119 ACGGATCTTAATGTATGAGCTCACA 59.931 40.000 20.97 14.32 0.00 3.58
586 596 4.704057 TGAGCTCACAGATATAGCATCGAT 59.296 41.667 13.74 0.00 38.75 3.59
597 607 8.341903 CAGATATAGCATCGATCGAGACTTAAT 58.658 37.037 23.84 16.90 0.00 1.40
621 640 4.712122 AGTCTCTACTTAGCAAGACTGC 57.288 45.455 9.84 0.00 45.05 4.40
623 642 5.105917 AAGTCTCTACTTAGCAAGACTGCTC 60.106 44.000 2.28 0.00 46.10 4.26
641 660 5.948162 ACTGCTCCAATAATATAGCAATGGG 59.052 40.000 0.00 0.00 43.85 4.00
678 697 2.424956 GCCACTTGGAGATAAAAGGCAG 59.575 50.000 0.00 0.00 40.50 4.85
686 705 5.126067 TGGAGATAAAAGGCAGCTATGAAC 58.874 41.667 0.00 0.00 0.00 3.18
712 731 8.768955 CAAGCCTCTGTTATAGAAATATGACAC 58.231 37.037 0.00 0.00 34.32 3.67
736 755 2.163818 TTTGGACGGATATCATCGCC 57.836 50.000 4.83 6.50 0.00 5.54
843 864 3.010420 GGTCCATCTAACACTTTGAGGC 58.990 50.000 0.00 0.00 0.00 4.70
844 865 3.010420 GTCCATCTAACACTTTGAGGCC 58.990 50.000 0.00 0.00 0.00 5.19
1156 3105 3.688272 ACGTACTGATCCATCGTAAACG 58.312 45.455 0.00 0.00 41.45 3.60
1395 5385 4.473520 CTGCCCGGCCGAACAGAT 62.474 66.667 31.74 0.00 31.67 2.90
1651 5698 3.724914 CTCTTCTTCCGCCGGGAGC 62.725 68.421 6.55 0.00 44.98 4.70
1652 5699 4.082523 CTTCTTCCGCCGGGAGCA 62.083 66.667 6.55 0.00 44.98 4.26
1653 5700 4.082523 TTCTTCCGCCGGGAGCAG 62.083 66.667 6.55 0.00 44.98 4.24
1814 5865 4.056125 CGTGAGAGCCTGGCGTCA 62.056 66.667 19.13 19.13 0.00 4.35
1891 5944 2.104331 ACACGTGATCGATCCGGC 59.896 61.111 27.98 16.82 40.62 6.13
1897 5950 0.103208 GTGATCGATCCGGCTCAGTT 59.897 55.000 22.31 0.00 0.00 3.16
1898 5951 0.385751 TGATCGATCCGGCTCAGTTC 59.614 55.000 22.31 4.19 0.00 3.01
1899 5952 0.385751 GATCGATCCGGCTCAGTTCA 59.614 55.000 14.76 0.00 0.00 3.18
1900 5953 0.387202 ATCGATCCGGCTCAGTTCAG 59.613 55.000 6.06 0.00 0.00 3.02
1902 5955 0.526524 CGATCCGGCTCAGTTCAGTC 60.527 60.000 6.06 0.00 0.00 3.51
1903 5956 0.532573 GATCCGGCTCAGTTCAGTCA 59.467 55.000 0.00 0.00 0.00 3.41
1904 5957 0.247736 ATCCGGCTCAGTTCAGTCAC 59.752 55.000 0.00 0.00 0.00 3.67
1905 5958 1.112916 TCCGGCTCAGTTCAGTCACA 61.113 55.000 0.00 0.00 0.00 3.58
1906 5959 0.036952 CCGGCTCAGTTCAGTCACAT 60.037 55.000 0.00 0.00 0.00 3.21
1907 5960 1.073964 CGGCTCAGTTCAGTCACATG 58.926 55.000 0.00 0.00 0.00 3.21
1908 5961 1.606480 CGGCTCAGTTCAGTCACATGT 60.606 52.381 0.00 0.00 0.00 3.21
1909 5962 2.498167 GGCTCAGTTCAGTCACATGTT 58.502 47.619 0.00 0.00 0.00 2.71
1910 5963 2.225019 GGCTCAGTTCAGTCACATGTTG 59.775 50.000 0.00 0.00 0.00 3.33
1911 5964 2.874701 GCTCAGTTCAGTCACATGTTGT 59.125 45.455 0.00 0.00 0.00 3.32
1967 6020 5.647658 ACCGAGAATCAAGCAATCACATAAA 59.352 36.000 0.00 0.00 33.17 1.40
2069 6124 1.142314 GCTACAATACCGCACCCGA 59.858 57.895 0.00 0.00 36.29 5.14
2168 6227 4.708421 GTGTCTACCCCCGCTATATATGAA 59.292 45.833 0.00 0.00 0.00 2.57
2449 6508 3.706698 TCGTCTTCTTCACAGTCAACAG 58.293 45.455 0.00 0.00 0.00 3.16
2476 6535 7.389330 TCGAGCAAAATTAAGTTCCTCATTACA 59.611 33.333 13.28 0.00 0.00 2.41
2614 6675 3.318275 ACTCAACGTCACTGCTCTTTCTA 59.682 43.478 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.328258 AGCGGGCCAATCAGTTTACT 59.672 50.000 4.39 0.00 0.00 2.24
24 25 4.747009 GCCCTTCCCTATGTAGGCTAAAAG 60.747 50.000 0.00 0.00 42.26 2.27
32 33 8.606830 AGAATAATAAAGCCCTTCCCTATGTAG 58.393 37.037 0.00 0.00 0.00 2.74
37 38 5.605488 ACGAGAATAATAAAGCCCTTCCCTA 59.395 40.000 0.00 0.00 0.00 3.53
40 41 5.365619 TCACGAGAATAATAAAGCCCTTCC 58.634 41.667 0.00 0.00 0.00 3.46
41 42 7.497925 AATCACGAGAATAATAAAGCCCTTC 57.502 36.000 0.00 0.00 0.00 3.46
76 77 2.568623 AACTAAGCACCACTTGAGGG 57.431 50.000 0.00 0.00 39.58 4.30
78 81 2.096218 GCGAAACTAAGCACCACTTGAG 60.096 50.000 0.00 0.00 39.58 3.02
80 83 1.873591 AGCGAAACTAAGCACCACTTG 59.126 47.619 0.00 0.00 39.58 3.16
83 86 5.290386 AGATATAGCGAAACTAAGCACCAC 58.710 41.667 0.00 0.00 33.57 4.16
85 88 6.846325 AAAGATATAGCGAAACTAAGCACC 57.154 37.500 0.00 0.00 33.57 5.01
94 97 8.604035 CAGAAGCTACAAAAAGATATAGCGAAA 58.396 33.333 0.00 0.00 43.89 3.46
97 100 7.470289 ACAGAAGCTACAAAAAGATATAGCG 57.530 36.000 0.00 0.00 43.89 4.26
191 194 7.160049 ACTATCTCTTATCATCATTGGTGCTG 58.840 38.462 0.00 0.00 0.00 4.41
234 238 9.373750 CTACATACGATTCTAAATAACGTCGAA 57.626 33.333 0.00 0.00 38.18 3.71
253 257 8.712285 TTAACACCTTGAACTATGCTACATAC 57.288 34.615 0.00 0.00 0.00 2.39
256 260 7.120579 CCATTTAACACCTTGAACTATGCTACA 59.879 37.037 0.00 0.00 0.00 2.74
277 281 9.889128 CCTTATTTTTCATGTATTGTCCCATTT 57.111 29.630 0.00 0.00 0.00 2.32
292 296 4.728534 CGAATCGTTGGCCTTATTTTTCA 58.271 39.130 3.32 0.00 0.00 2.69
293 297 3.546271 GCGAATCGTTGGCCTTATTTTTC 59.454 43.478 3.32 0.00 0.00 2.29
294 298 3.507786 GCGAATCGTTGGCCTTATTTTT 58.492 40.909 3.32 0.00 0.00 1.94
303 307 1.940613 AGATTTAGGCGAATCGTTGGC 59.059 47.619 4.07 0.00 40.22 4.52
304 308 5.064198 TGTTAAGATTTAGGCGAATCGTTGG 59.936 40.000 4.07 0.00 40.22 3.77
305 309 5.957796 GTGTTAAGATTTAGGCGAATCGTTG 59.042 40.000 4.07 0.00 40.22 4.10
306 310 5.640357 TGTGTTAAGATTTAGGCGAATCGTT 59.360 36.000 4.07 0.00 40.22 3.85
307 311 5.172934 TGTGTTAAGATTTAGGCGAATCGT 58.827 37.500 4.07 9.49 40.22 3.73
308 312 5.518847 TCTGTGTTAAGATTTAGGCGAATCG 59.481 40.000 0.00 0.00 40.22 3.34
309 313 6.535508 ACTCTGTGTTAAGATTTAGGCGAATC 59.464 38.462 8.11 8.11 36.50 2.52
310 314 6.407202 ACTCTGTGTTAAGATTTAGGCGAAT 58.593 36.000 0.00 0.00 0.00 3.34
311 315 5.790593 ACTCTGTGTTAAGATTTAGGCGAA 58.209 37.500 0.00 0.00 0.00 4.70
312 316 5.185249 AGACTCTGTGTTAAGATTTAGGCGA 59.815 40.000 0.00 0.00 0.00 5.54
329 333 6.443934 TCTTTAAGATCGAAGGAGACTCTG 57.556 41.667 1.74 0.00 42.68 3.35
338 342 6.315551 TCGACACTCTTCTTTAAGATCGAAG 58.684 40.000 11.92 0.40 42.96 3.79
339 343 6.250344 TCGACACTCTTCTTTAAGATCGAA 57.750 37.500 11.92 0.00 42.96 3.71
356 360 6.855914 TGAAAAGTAGAAAATGCAATCGACAC 59.144 34.615 11.36 0.00 0.00 3.67
357 361 6.855914 GTGAAAAGTAGAAAATGCAATCGACA 59.144 34.615 11.36 0.00 0.00 4.35
376 380 9.619316 CACATAGGATAATTTTTGACGTGAAAA 57.381 29.630 8.92 8.92 0.00 2.29
379 383 6.882140 ACCACATAGGATAATTTTTGACGTGA 59.118 34.615 0.00 0.00 41.22 4.35
399 403 3.128764 CGTCAGCTTCATAGTCTACCACA 59.871 47.826 0.00 0.00 0.00 4.17
400 404 3.128938 ACGTCAGCTTCATAGTCTACCAC 59.871 47.826 0.00 0.00 0.00 4.16
402 406 3.696898 CACGTCAGCTTCATAGTCTACC 58.303 50.000 0.00 0.00 0.00 3.18
416 420 6.455113 GGGCATATTATAAATACGCACGTCAG 60.455 42.308 0.00 0.00 0.00 3.51
419 423 5.484715 AGGGCATATTATAAATACGCACGT 58.515 37.500 0.00 0.00 0.00 4.49
452 457 3.064271 GTCGAGTGAGACCTAGACACATC 59.936 52.174 0.00 0.00 37.14 3.06
458 463 3.697619 TTCAGTCGAGTGAGACCTAGA 57.302 47.619 21.49 3.86 41.83 2.43
485 490 8.620116 TGTTATGTCACTTGATTGAGATTTGA 57.380 30.769 0.00 0.00 32.11 2.69
572 582 7.851387 TTAAGTCTCGATCGATGCTATATCT 57.149 36.000 19.78 6.82 0.00 1.98
597 607 5.336055 GCAGTCTTGCTAAGTAGAGACTTCA 60.336 44.000 6.87 0.00 44.68 3.02
641 660 0.035739 TGGCTGAAACGTTACTCCCC 59.964 55.000 0.00 0.75 0.00 4.81
650 669 1.813513 ATCTCCAAGTGGCTGAAACG 58.186 50.000 0.00 0.00 34.44 3.60
656 675 2.041620 TGCCTTTTATCTCCAAGTGGCT 59.958 45.455 0.00 0.00 39.77 4.75
678 697 6.516718 TCTATAACAGAGGCTTGTTCATAGC 58.483 40.000 15.15 0.00 41.31 2.97
686 705 8.768955 GTGTCATATTTCTATAACAGAGGCTTG 58.231 37.037 0.00 0.00 33.83 4.01
712 731 3.367932 CGATGATATCCGTCCAAATTCGG 59.632 47.826 0.00 0.00 46.93 4.30
736 755 2.540515 CGTTATATATCGCTGGCAGGG 58.459 52.381 24.22 24.22 0.00 4.45
773 792 1.707106 TGAACAGGGACGTAACCAGA 58.293 50.000 10.98 0.00 0.00 3.86
857 891 1.834188 GGCTTAGCACCTTTAAGGCA 58.166 50.000 11.45 0.00 46.84 4.75
949 984 3.426859 CGTGTGTGCTTTGTTAGAGAGAG 59.573 47.826 0.00 0.00 0.00 3.20
950 985 3.381045 CGTGTGTGCTTTGTTAGAGAGA 58.619 45.455 0.00 0.00 0.00 3.10
1156 3105 3.571401 CCCCATTGATAGAACCAGAATGC 59.429 47.826 0.00 0.00 31.97 3.56
1347 5337 1.294041 TGATGGACCACCTATTGCCA 58.706 50.000 0.00 0.00 37.04 4.92
1353 5343 1.744320 CGGCGATGATGGACCACCTA 61.744 60.000 0.00 0.00 37.04 3.08
1395 5385 7.211573 TGTTCCAGTAGTTCTTGATTTCGTTA 58.788 34.615 0.00 0.00 0.00 3.18
1729 5779 3.805307 CGACGTCTCCGAGCTGCT 61.805 66.667 14.70 0.00 37.88 4.24
1730 5780 4.104417 ACGACGTCTCCGAGCTGC 62.104 66.667 14.70 0.00 37.88 5.25
1731 5781 2.098680 GACGACGTCTCCGAGCTG 59.901 66.667 20.52 0.00 37.88 4.24
1891 5944 5.490139 AAACAACATGTGACTGAACTGAG 57.510 39.130 0.00 0.00 0.00 3.35
1898 5951 9.559958 GGATTTATTCTAAACAACATGTGACTG 57.440 33.333 0.00 0.00 0.00 3.51
1899 5952 8.450964 CGGATTTATTCTAAACAACATGTGACT 58.549 33.333 0.00 0.00 0.00 3.41
1900 5953 8.447833 TCGGATTTATTCTAAACAACATGTGAC 58.552 33.333 0.00 0.00 0.00 3.67
1902 5955 7.910162 CCTCGGATTTATTCTAAACAACATGTG 59.090 37.037 0.00 0.00 0.00 3.21
1903 5956 7.415206 GCCTCGGATTTATTCTAAACAACATGT 60.415 37.037 0.00 0.00 0.00 3.21
1904 5957 6.912591 GCCTCGGATTTATTCTAAACAACATG 59.087 38.462 0.00 0.00 0.00 3.21
1905 5958 6.238374 CGCCTCGGATTTATTCTAAACAACAT 60.238 38.462 0.00 0.00 0.00 2.71
1906 5959 5.064198 CGCCTCGGATTTATTCTAAACAACA 59.936 40.000 0.00 0.00 0.00 3.33
1907 5960 5.499047 CGCCTCGGATTTATTCTAAACAAC 58.501 41.667 0.00 0.00 0.00 3.32
1908 5961 4.034742 GCGCCTCGGATTTATTCTAAACAA 59.965 41.667 0.00 0.00 0.00 2.83
1909 5962 3.558418 GCGCCTCGGATTTATTCTAAACA 59.442 43.478 0.00 0.00 0.00 2.83
1910 5963 3.808174 AGCGCCTCGGATTTATTCTAAAC 59.192 43.478 2.29 0.00 0.00 2.01
1911 5964 4.056050 GAGCGCCTCGGATTTATTCTAAA 58.944 43.478 2.29 0.00 0.00 1.85
1967 6020 4.089493 CGTTAACAAATCTCGATGTCGTGT 59.911 41.667 6.39 0.00 40.80 4.49
2034 6089 2.966732 GCGGTGTCATGGGGAGGAA 61.967 63.158 0.00 0.00 0.00 3.36
2168 6227 2.772515 GGACACTTGTATCCTAGGCCTT 59.227 50.000 12.58 0.00 31.75 4.35
2449 6508 5.607119 TGAGGAACTTAATTTTGCTCGAC 57.393 39.130 11.47 0.00 42.63 4.20
2476 6535 3.477530 GAAGTTGGAAGCACAAGGTAGT 58.522 45.455 0.00 0.00 0.00 2.73
2614 6675 5.471456 CCTTCAAGTTTCAGACAAGCAGTAT 59.529 40.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.