Multiple sequence alignment - TraesCS7A01G163300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G163300 chr7A 100.000 4216 0 0 1 4216 119705239 119701024 0.000000e+00 7786.0
1 TraesCS7A01G163300 chr7A 95.156 640 21 7 3585 4216 28310315 28309678 0.000000e+00 1002.0
2 TraesCS7A01G163300 chr7A 79.565 230 40 7 2579 2804 561603388 561603162 1.570000e-34 158.0
3 TraesCS7A01G163300 chr7B 90.656 1616 89 35 1891 3481 74599173 74597595 0.000000e+00 2091.0
4 TraesCS7A01G163300 chr7B 90.785 1096 49 27 732 1789 74600741 74599660 0.000000e+00 1417.0
5 TraesCS7A01G163300 chr7B 96.113 566 20 2 3652 4216 186980260 186979696 0.000000e+00 922.0
6 TraesCS7A01G163300 chr7B 84.044 633 57 20 1 632 74601769 74601180 1.700000e-158 569.0
7 TraesCS7A01G163300 chr7B 85.327 443 38 12 3079 3509 74575425 74574998 2.330000e-117 433.0
8 TraesCS7A01G163300 chr7B 80.469 256 41 8 2572 2823 565577301 565577551 2.000000e-43 187.0
9 TraesCS7A01G163300 chr7D 92.369 996 34 14 2487 3464 115048553 115047582 0.000000e+00 1380.0
10 TraesCS7A01G163300 chr7D 89.139 1068 59 29 1459 2503 115049536 115048503 0.000000e+00 1277.0
11 TraesCS7A01G163300 chr7D 92.424 660 14 16 737 1377 115050248 115049606 0.000000e+00 909.0
12 TraesCS7A01G163300 chr7D 86.055 545 41 15 8 548 115051090 115050577 1.710000e-153 553.0
13 TraesCS7A01G163300 chr7D 84.783 184 24 3 2572 2753 528080127 528080308 9.310000e-42 182.0
14 TraesCS7A01G163300 chr7D 88.571 140 14 1 2568 2705 259964132 259964271 7.250000e-38 169.0
15 TraesCS7A01G163300 chr7D 80.435 230 38 7 2579 2804 495852001 495851775 7.250000e-38 169.0
16 TraesCS7A01G163300 chr1B 96.473 567 17 2 3652 4216 654514021 654513456 0.000000e+00 933.0
17 TraesCS7A01G163300 chr1B 93.333 60 3 1 3589 3648 654514053 654513995 2.090000e-13 87.9
18 TraesCS7A01G163300 chr1B 79.452 146 7 11 3526 3648 563569257 563569112 9.720000e-12 82.4
19 TraesCS7A01G163300 chr6B 96.619 562 17 2 3656 4216 98591740 98591180 0.000000e+00 931.0
20 TraesCS7A01G163300 chr6B 85.615 431 53 8 2566 2993 640978881 640978457 1.080000e-120 444.0
21 TraesCS7A01G163300 chr6B 80.371 377 54 16 1482 1846 640980040 640979672 6.950000e-68 268.0
22 TraesCS7A01G163300 chr2B 96.283 565 19 2 3652 4215 763803525 763802962 0.000000e+00 926.0
23 TraesCS7A01G163300 chr2B 96.113 566 20 2 3652 4216 94424912 94425476 0.000000e+00 922.0
24 TraesCS7A01G163300 chr2B 77.934 426 74 17 2582 2997 174828819 174828404 9.050000e-62 248.0
25 TraesCS7A01G163300 chr2B 79.389 131 12 7 3510 3627 764114234 764114362 1.260000e-10 78.7
26 TraesCS7A01G163300 chr2B 100.000 40 0 0 3527 3566 711709553 711709592 1.630000e-09 75.0
27 TraesCS7A01G163300 chr2B 100.000 40 0 0 3527 3566 711715625 711715664 1.630000e-09 75.0
28 TraesCS7A01G163300 chrUn 96.120 567 18 4 3652 4216 238094897 238095461 0.000000e+00 922.0
29 TraesCS7A01G163300 chr5B 96.120 567 19 3 3652 4216 250534383 250534948 0.000000e+00 922.0
30 TraesCS7A01G163300 chr5B 87.963 108 13 0 1740 1847 378511639 378511746 1.230000e-25 128.0
31 TraesCS7A01G163300 chr5B 81.208 149 4 12 3523 3648 575513681 575513828 9.650000e-17 99.0
32 TraesCS7A01G163300 chr5B 86.667 75 9 1 426 499 12686901 12686975 9.720000e-12 82.4
33 TraesCS7A01G163300 chr5B 86.567 67 8 1 433 498 355851029 355850963 5.850000e-09 73.1
34 TraesCS7A01G163300 chr5B 100.000 29 0 0 471 499 596698687 596698659 2.000000e-03 54.7
35 TraesCS7A01G163300 chr4A 96.113 566 20 2 3652 4216 709219641 709219077 0.000000e+00 922.0
36 TraesCS7A01G163300 chr4A 78.884 251 41 8 1128 1375 5839661 5839420 4.360000e-35 159.0
37 TraesCS7A01G163300 chr4A 97.778 45 1 0 1794 1838 193728 193684 1.260000e-10 78.7
38 TraesCS7A01G163300 chr6A 86.480 429 49 8 2568 2993 570382535 570382113 2.970000e-126 462.0
39 TraesCS7A01G163300 chr6A 81.481 351 43 15 1502 1846 570383740 570383406 6.950000e-68 268.0
40 TraesCS7A01G163300 chr6D 86.079 431 51 8 2566 2993 425902769 425902345 4.970000e-124 455.0
41 TraesCS7A01G163300 chr6D 80.114 352 48 18 1502 1846 425903884 425903548 4.210000e-60 243.0
42 TraesCS7A01G163300 chr2D 78.509 456 76 19 2582 3026 121703540 121703096 3.210000e-71 279.0
43 TraesCS7A01G163300 chr2D 97.619 42 1 0 1569 1610 50158223 50158182 5.850000e-09 73.1
44 TraesCS7A01G163300 chr2A 78.427 445 79 16 2582 3017 125900754 125900318 1.490000e-69 274.0
45 TraesCS7A01G163300 chr5D 89.286 140 13 1 2568 2705 39347385 39347246 1.560000e-39 174.0
46 TraesCS7A01G163300 chr5D 87.963 108 13 0 1740 1847 326119199 326119306 1.230000e-25 128.0
47 TraesCS7A01G163300 chr5D 86.111 108 15 0 1740 1847 325664651 325664758 2.660000e-22 117.0
48 TraesCS7A01G163300 chr5D 95.238 42 2 0 2709 2750 5816828 5816787 2.720000e-07 67.6
49 TraesCS7A01G163300 chr4D 79.762 252 37 12 1128 1375 464153137 464153378 2.020000e-38 171.0
50 TraesCS7A01G163300 chr4D 81.250 144 4 11 3527 3647 385699160 385699017 1.250000e-15 95.3
51 TraesCS7A01G163300 chr4D 97.778 45 1 0 1794 1838 464282 464238 1.260000e-10 78.7
52 TraesCS7A01G163300 chr1D 77.165 254 51 7 1125 1376 77838821 77839069 1.580000e-29 141.0
53 TraesCS7A01G163300 chr1D 89.062 64 2 2 3527 3586 115081038 115080976 1.630000e-09 75.0
54 TraesCS7A01G163300 chr1A 75.591 254 55 7 1125 1376 108922516 108922764 7.400000e-23 119.0
55 TraesCS7A01G163300 chr1A 87.879 66 4 2 1304 1365 7519408 7519473 1.630000e-09 75.0
56 TraesCS7A01G163300 chr5A 85.714 112 15 1 1740 1850 430507384 430507273 2.660000e-22 117.0
57 TraesCS7A01G163300 chr5A 84.821 112 16 1 1740 1850 430957704 430957593 1.240000e-20 111.0
58 TraesCS7A01G163300 chr5A 88.235 68 2 3 3523 3586 19994536 19994601 4.520000e-10 76.8
59 TraesCS7A01G163300 chr3D 95.161 62 3 0 2697 2758 81815912 81815973 9.650000e-17 99.0
60 TraesCS7A01G163300 chr4B 95.000 60 2 1 3589 3648 668515936 668515994 4.490000e-15 93.5
61 TraesCS7A01G163300 chr4B 93.333 60 3 1 3589 3648 669474627 669474685 2.090000e-13 87.9
62 TraesCS7A01G163300 chr4B 97.778 45 1 0 1794 1838 234389 234345 1.260000e-10 78.7
63 TraesCS7A01G163300 chr3B 100.000 44 0 0 3523 3566 14975548 14975505 9.720000e-12 82.4
64 TraesCS7A01G163300 chr3B 85.526 76 10 1 426 500 815466457 815466532 1.260000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G163300 chr7A 119701024 119705239 4215 True 7786.00 7786 100.00000 1 4216 1 chr7A.!!$R2 4215
1 TraesCS7A01G163300 chr7A 28309678 28310315 637 True 1002.00 1002 95.15600 3585 4216 1 chr7A.!!$R1 631
2 TraesCS7A01G163300 chr7B 74597595 74601769 4174 True 1359.00 2091 88.49500 1 3481 3 chr7B.!!$R3 3480
3 TraesCS7A01G163300 chr7B 186979696 186980260 564 True 922.00 922 96.11300 3652 4216 1 chr7B.!!$R2 564
4 TraesCS7A01G163300 chr7D 115047582 115051090 3508 True 1029.75 1380 89.99675 8 3464 4 chr7D.!!$R2 3456
5 TraesCS7A01G163300 chr1B 654513456 654514053 597 True 510.45 933 94.90300 3589 4216 2 chr1B.!!$R2 627
6 TraesCS7A01G163300 chr6B 98591180 98591740 560 True 931.00 931 96.61900 3656 4216 1 chr6B.!!$R1 560
7 TraesCS7A01G163300 chr6B 640978457 640980040 1583 True 356.00 444 82.99300 1482 2993 2 chr6B.!!$R2 1511
8 TraesCS7A01G163300 chr2B 763802962 763803525 563 True 926.00 926 96.28300 3652 4215 1 chr2B.!!$R2 563
9 TraesCS7A01G163300 chr2B 94424912 94425476 564 False 922.00 922 96.11300 3652 4216 1 chr2B.!!$F1 564
10 TraesCS7A01G163300 chrUn 238094897 238095461 564 False 922.00 922 96.12000 3652 4216 1 chrUn.!!$F1 564
11 TraesCS7A01G163300 chr5B 250534383 250534948 565 False 922.00 922 96.12000 3652 4216 1 chr5B.!!$F2 564
12 TraesCS7A01G163300 chr4A 709219077 709219641 564 True 922.00 922 96.11300 3652 4216 1 chr4A.!!$R3 564
13 TraesCS7A01G163300 chr6A 570382113 570383740 1627 True 365.00 462 83.98050 1502 2993 2 chr6A.!!$R1 1491
14 TraesCS7A01G163300 chr6D 425902345 425903884 1539 True 349.00 455 83.09650 1502 2993 2 chr6D.!!$R1 1491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 593 0.179100 CACTATGAGGGCGTCTGTGG 60.179 60.0 8.82 2.39 0.00 4.17 F
1469 2028 0.105778 TTCATGTGTGGCGTGACTGA 59.894 50.0 0.00 0.00 42.33 3.41 F
1921 2899 0.108585 AAGCCTGTACCACCACTGTG 59.891 55.0 0.00 0.00 42.39 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1973 2951 0.100325 CGACCTGCTACTCTGCTCTG 59.900 60.0 0.00 0.0 0.00 3.35 R
3206 4578 0.102120 GAGTCCCTGCTCAGATCACG 59.898 60.0 0.00 0.0 35.67 4.35 R
3529 4916 0.039437 CGACTGGTCGTTAGCACAGT 60.039 55.0 14.05 0.0 46.99 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.519455 GAACCGATCGTGCTGGGAG 60.519 63.158 15.09 0.00 0.00 4.30
60 61 1.345422 TGCTTGTCCTCATCCCCCTAT 60.345 52.381 0.00 0.00 0.00 2.57
61 62 2.090210 TGCTTGTCCTCATCCCCCTATA 60.090 50.000 0.00 0.00 0.00 1.31
72 73 9.129870 TCCTCATCCCCCTATATATCTATCTAC 57.870 40.741 0.00 0.00 0.00 2.59
84 87 3.400505 TCTATCTACAGAACACGCACG 57.599 47.619 0.00 0.00 0.00 5.34
102 105 6.195613 CACGCACGAAAAAGACAGAATTAAAA 59.804 34.615 0.00 0.00 0.00 1.52
103 106 6.195798 ACGCACGAAAAAGACAGAATTAAAAC 59.804 34.615 0.00 0.00 0.00 2.43
104 107 6.413818 CGCACGAAAAAGACAGAATTAAAACT 59.586 34.615 0.00 0.00 0.00 2.66
105 108 7.584847 CGCACGAAAAAGACAGAATTAAAACTA 59.415 33.333 0.00 0.00 0.00 2.24
106 109 9.394477 GCACGAAAAAGACAGAATTAAAACTAT 57.606 29.630 0.00 0.00 0.00 2.12
149 152 6.116126 ACTCCTCCTAATGATAAGCACAAAC 58.884 40.000 0.00 0.00 0.00 2.93
150 153 5.116180 TCCTCCTAATGATAAGCACAAACG 58.884 41.667 0.00 0.00 0.00 3.60
151 154 5.105106 TCCTCCTAATGATAAGCACAAACGA 60.105 40.000 0.00 0.00 0.00 3.85
178 181 2.836981 ACTCCTGCTATGCTATCCCATC 59.163 50.000 0.00 0.00 0.00 3.51
181 184 1.911357 CTGCTATGCTATCCCATCCCA 59.089 52.381 0.00 0.00 0.00 4.37
185 188 1.302907 ATGCTATCCCATCCCATCCC 58.697 55.000 0.00 0.00 0.00 3.85
186 189 0.846427 TGCTATCCCATCCCATCCCC 60.846 60.000 0.00 0.00 0.00 4.81
187 190 0.551131 GCTATCCCATCCCATCCCCT 60.551 60.000 0.00 0.00 0.00 4.79
188 191 1.293062 CTATCCCATCCCATCCCCTG 58.707 60.000 0.00 0.00 0.00 4.45
189 192 0.846427 TATCCCATCCCATCCCCTGC 60.846 60.000 0.00 0.00 0.00 4.85
206 209 2.031682 CCTGCGTGGAGAAAGAAAGTTG 60.032 50.000 0.00 0.00 38.35 3.16
289 292 1.131126 GATGCATCACCGTTCACCAAG 59.869 52.381 21.92 0.00 0.00 3.61
329 332 4.467438 CCCCTTTCATACCTTGATGCTTTT 59.533 41.667 0.00 0.00 33.34 2.27
330 333 5.413499 CCCTTTCATACCTTGATGCTTTTG 58.587 41.667 0.00 0.00 33.34 2.44
331 334 5.047092 CCCTTTCATACCTTGATGCTTTTGT 60.047 40.000 0.00 0.00 33.34 2.83
332 335 6.458210 CCTTTCATACCTTGATGCTTTTGTT 58.542 36.000 0.00 0.00 33.34 2.83
333 336 6.930722 CCTTTCATACCTTGATGCTTTTGTTT 59.069 34.615 0.00 0.00 33.34 2.83
334 337 7.442062 CCTTTCATACCTTGATGCTTTTGTTTT 59.558 33.333 0.00 0.00 33.34 2.43
335 338 7.712264 TTCATACCTTGATGCTTTTGTTTTG 57.288 32.000 0.00 0.00 33.34 2.44
336 339 5.695816 TCATACCTTGATGCTTTTGTTTTGC 59.304 36.000 0.00 0.00 0.00 3.68
337 340 4.141233 ACCTTGATGCTTTTGTTTTGCT 57.859 36.364 0.00 0.00 0.00 3.91
338 341 4.516323 ACCTTGATGCTTTTGTTTTGCTT 58.484 34.783 0.00 0.00 0.00 3.91
339 342 4.943093 ACCTTGATGCTTTTGTTTTGCTTT 59.057 33.333 0.00 0.00 0.00 3.51
350 353 4.080969 TGTTTTGCTTTGCTTTGCTTTG 57.919 36.364 0.00 0.00 0.00 2.77
352 355 2.399916 TTGCTTTGCTTTGCTTTGGT 57.600 40.000 0.00 0.00 0.00 3.67
368 371 7.572523 TGCTTTGGTCCTCTATTCATTATTG 57.427 36.000 0.00 0.00 0.00 1.90
371 374 7.469181 GCTTTGGTCCTCTATTCATTATTGGTG 60.469 40.741 0.00 0.00 0.00 4.17
379 382 7.933577 CCTCTATTCATTATTGGTGTGAAGCTA 59.066 37.037 0.00 0.00 35.56 3.32
428 431 5.365021 AACTAACCAAGCTATCTGCATCT 57.635 39.130 0.00 0.00 45.94 2.90
430 433 6.485830 ACTAACCAAGCTATCTGCATCTAA 57.514 37.500 0.00 0.00 45.94 2.10
450 453 0.968405 AAAAATGCGACCACCATGCT 59.032 45.000 0.00 0.00 0.00 3.79
469 472 6.096001 CCATGCTAAGGCTAGAATTTGAACTT 59.904 38.462 0.00 0.00 39.59 2.66
504 507 2.621526 CCACCACAAGGAACCTTTGTAC 59.378 50.000 3.10 0.00 38.69 2.90
548 551 4.988540 CCTTCCAGCGATATTCGTTCAATA 59.011 41.667 0.00 0.00 42.81 1.90
550 553 6.018262 CCTTCCAGCGATATTCGTTCAATAAA 60.018 38.462 0.00 0.00 42.81 1.40
554 557 6.238374 CCAGCGATATTCGTTCAATAAAAGGT 60.238 38.462 0.00 0.00 42.81 3.50
557 560 8.333186 AGCGATATTCGTTCAATAAAAGGTTAC 58.667 33.333 0.00 0.00 42.81 2.50
558 561 8.117988 GCGATATTCGTTCAATAAAAGGTTACA 58.882 33.333 0.00 0.00 42.81 2.41
575 578 7.027874 AGGTTACATTTCATTTCCTCCACTA 57.972 36.000 0.00 0.00 0.00 2.74
576 579 7.643123 AGGTTACATTTCATTTCCTCCACTAT 58.357 34.615 0.00 0.00 0.00 2.12
579 582 8.616076 GTTACATTTCATTTCCTCCACTATGAG 58.384 37.037 0.00 0.00 0.00 2.90
590 593 0.179100 CACTATGAGGGCGTCTGTGG 60.179 60.000 8.82 2.39 0.00 4.17
593 596 1.960040 TATGAGGGCGTCTGTGGCAG 61.960 60.000 8.82 0.00 35.84 4.85
604 607 1.275010 TCTGTGGCAGCTTCGTCAATA 59.725 47.619 0.00 0.00 0.00 1.90
606 609 2.009051 TGTGGCAGCTTCGTCAATATG 58.991 47.619 0.00 0.00 0.00 1.78
608 611 2.286294 GTGGCAGCTTCGTCAATATGAG 59.714 50.000 0.00 0.00 0.00 2.90
609 612 2.168313 TGGCAGCTTCGTCAATATGAGA 59.832 45.455 0.00 0.00 0.00 3.27
612 615 4.991056 GGCAGCTTCGTCAATATGAGAATA 59.009 41.667 0.00 0.00 0.00 1.75
613 616 5.466728 GGCAGCTTCGTCAATATGAGAATAA 59.533 40.000 0.00 0.00 0.00 1.40
618 621 9.935241 AGCTTCGTCAATATGAGAATAATATGT 57.065 29.630 0.00 0.00 0.00 2.29
627 630 5.791336 TGAGAATAATATGTCCGCTCAGT 57.209 39.130 0.00 0.00 0.00 3.41
632 635 6.266558 AGAATAATATGTCCGCTCAGTCTCTT 59.733 38.462 0.00 0.00 0.00 2.85
633 636 7.448777 AGAATAATATGTCCGCTCAGTCTCTTA 59.551 37.037 0.00 0.00 0.00 2.10
634 637 5.854010 AATATGTCCGCTCAGTCTCTTAA 57.146 39.130 0.00 0.00 0.00 1.85
636 639 4.537135 ATGTCCGCTCAGTCTCTTAAAA 57.463 40.909 0.00 0.00 0.00 1.52
637 640 4.537135 TGTCCGCTCAGTCTCTTAAAAT 57.463 40.909 0.00 0.00 0.00 1.82
638 641 4.894784 TGTCCGCTCAGTCTCTTAAAATT 58.105 39.130 0.00 0.00 0.00 1.82
657 1008 2.401017 TCATATGTACGAGCGTCTGC 57.599 50.000 1.90 0.00 43.24 4.26
671 1022 1.069159 CGTCTGCGTCTCTAGTGTGTT 60.069 52.381 0.00 0.00 0.00 3.32
673 1024 3.364664 CGTCTGCGTCTCTAGTGTGTTAA 60.365 47.826 0.00 0.00 0.00 2.01
674 1025 4.543692 GTCTGCGTCTCTAGTGTGTTAAA 58.456 43.478 0.00 0.00 0.00 1.52
675 1026 4.980434 GTCTGCGTCTCTAGTGTGTTAAAA 59.020 41.667 0.00 0.00 0.00 1.52
676 1027 5.634020 GTCTGCGTCTCTAGTGTGTTAAAAT 59.366 40.000 0.00 0.00 0.00 1.82
677 1028 6.805271 GTCTGCGTCTCTAGTGTGTTAAAATA 59.195 38.462 0.00 0.00 0.00 1.40
678 1029 7.327761 GTCTGCGTCTCTAGTGTGTTAAAATAA 59.672 37.037 0.00 0.00 0.00 1.40
679 1030 7.868922 TCTGCGTCTCTAGTGTGTTAAAATAAA 59.131 33.333 0.00 0.00 0.00 1.40
680 1031 7.790000 TGCGTCTCTAGTGTGTTAAAATAAAC 58.210 34.615 0.00 0.00 0.00 2.01
681 1032 6.946584 GCGTCTCTAGTGTGTTAAAATAAACG 59.053 38.462 0.00 0.00 31.76 3.60
682 1033 7.148918 GCGTCTCTAGTGTGTTAAAATAAACGA 60.149 37.037 0.00 0.00 31.76 3.85
683 1034 8.363755 CGTCTCTAGTGTGTTAAAATAAACGAG 58.636 37.037 0.00 0.00 31.76 4.18
684 1035 8.160976 GTCTCTAGTGTGTTAAAATAAACGAGC 58.839 37.037 0.00 0.00 31.76 5.03
685 1036 8.086522 TCTCTAGTGTGTTAAAATAAACGAGCT 58.913 33.333 0.00 0.00 31.76 4.09
686 1037 8.014322 TCTAGTGTGTTAAAATAAACGAGCTG 57.986 34.615 0.00 0.00 31.76 4.24
687 1038 5.449304 AGTGTGTTAAAATAAACGAGCTGC 58.551 37.500 0.00 0.00 31.76 5.25
688 1039 5.238650 AGTGTGTTAAAATAAACGAGCTGCT 59.761 36.000 0.00 0.00 31.76 4.24
689 1040 5.564127 GTGTGTTAAAATAAACGAGCTGCTC 59.436 40.000 19.53 19.53 31.76 4.26
690 1041 5.468746 TGTGTTAAAATAAACGAGCTGCTCT 59.531 36.000 25.59 11.20 31.76 4.09
691 1042 6.647481 TGTGTTAAAATAAACGAGCTGCTCTA 59.353 34.615 25.59 13.00 31.76 2.43
714 1065 9.944663 TCTACTGTGTTAAAAATAAACAAGCTG 57.055 29.630 0.00 0.00 38.50 4.24
775 1298 4.095483 CACCTGCTCTATTTGGCTTGTTAG 59.905 45.833 0.00 0.00 0.00 2.34
900 1436 2.541556 GCCATCTTCGTCTTGTCCTAC 58.458 52.381 0.00 0.00 0.00 3.18
927 1473 4.135153 CGCAGACCACTCCCTCCG 62.135 72.222 0.00 0.00 0.00 4.63
933 1483 1.133730 AGACCACTCCCTCCGTCTATC 60.134 57.143 0.00 0.00 33.87 2.08
971 1521 0.526096 GAGAAGAGCAGAGCAGAGCG 60.526 60.000 0.00 0.00 35.48 5.03
972 1522 1.519013 GAAGAGCAGAGCAGAGCGG 60.519 63.158 0.00 0.00 35.48 5.52
973 1523 1.943116 GAAGAGCAGAGCAGAGCGGA 61.943 60.000 0.00 0.00 35.48 5.54
974 1524 1.947597 AAGAGCAGAGCAGAGCGGAG 61.948 60.000 0.00 0.00 35.48 4.63
991 1541 1.402511 GAGCAACAAAGCGCAAGAAG 58.597 50.000 11.47 0.00 40.15 2.85
992 1542 0.595825 AGCAACAAAGCGCAAGAAGC 60.596 50.000 11.47 6.39 40.15 3.86
1185 1739 2.743928 CTGCACGCCTTCACCCTC 60.744 66.667 0.00 0.00 0.00 4.30
1387 1941 1.038280 GGTACGTCCCGATTGATCCT 58.962 55.000 0.00 0.00 0.00 3.24
1389 1943 1.000496 GTACGTCCCGATTGATCCTCC 60.000 57.143 0.00 0.00 0.00 4.30
1390 1944 1.007271 CGTCCCGATTGATCCTCCG 60.007 63.158 0.00 0.00 0.00 4.63
1402 1961 0.394352 ATCCTCCGCCGCAAGATTTT 60.394 50.000 0.00 0.00 43.02 1.82
1430 1989 3.777925 CCAACCGCAGCTCGTTCG 61.778 66.667 5.15 0.00 36.19 3.95
1436 1995 2.437343 CGCAGCTCGTTCGTTCTCC 61.437 63.158 0.00 0.00 0.00 3.71
1445 2004 5.299782 AGCTCGTTCGTTCTCCTAATCTAAT 59.700 40.000 0.00 0.00 0.00 1.73
1451 2010 7.435488 CGTTCGTTCTCCTAATCTAATCATGTT 59.565 37.037 0.00 0.00 0.00 2.71
1452 2011 8.756864 GTTCGTTCTCCTAATCTAATCATGTTC 58.243 37.037 0.00 0.00 0.00 3.18
1453 2012 8.007405 TCGTTCTCCTAATCTAATCATGTTCA 57.993 34.615 0.00 0.00 0.00 3.18
1454 2013 8.642432 TCGTTCTCCTAATCTAATCATGTTCAT 58.358 33.333 0.00 0.00 0.00 2.57
1455 2014 8.706936 CGTTCTCCTAATCTAATCATGTTCATG 58.293 37.037 6.46 6.46 0.00 3.07
1457 2016 9.551734 TTCTCCTAATCTAATCATGTTCATGTG 57.448 33.333 11.73 3.30 0.00 3.21
1461 2020 5.762825 ATCTAATCATGTTCATGTGTGGC 57.237 39.130 11.73 0.00 0.00 5.01
1465 2024 0.873721 CATGTTCATGTGTGGCGTGA 59.126 50.000 4.80 0.00 41.04 4.35
1469 2028 0.105778 TTCATGTGTGGCGTGACTGA 59.894 50.000 0.00 0.00 42.33 3.41
1472 2031 0.391661 ATGTGTGGCGTGACTGATCC 60.392 55.000 0.00 0.00 0.00 3.36
1474 2033 0.391661 GTGTGGCGTGACTGATCCAT 60.392 55.000 0.00 0.00 0.00 3.41
1643 2223 6.852345 GCGCTCAAAATTCATCAACAATTTTT 59.148 30.769 0.00 0.00 40.07 1.94
1688 2277 1.667724 CGACTGGGTTGCTGATTGATC 59.332 52.381 0.00 0.00 0.00 2.92
1690 2279 1.278985 ACTGGGTTGCTGATTGATCGA 59.721 47.619 0.00 0.00 0.00 3.59
1691 2280 1.667724 CTGGGTTGCTGATTGATCGAC 59.332 52.381 0.00 0.00 0.00 4.20
1692 2281 1.278985 TGGGTTGCTGATTGATCGACT 59.721 47.619 0.00 0.00 0.00 4.18
1694 2283 1.667724 GGTTGCTGATTGATCGACTGG 59.332 52.381 0.00 0.00 0.00 4.00
1695 2284 1.063174 GTTGCTGATTGATCGACTGGC 59.937 52.381 0.00 0.00 0.00 4.85
1696 2285 0.462581 TGCTGATTGATCGACTGGCC 60.463 55.000 0.00 0.00 0.00 5.36
1852 2499 0.965866 TCGACTCGGTGAGCTCCATT 60.966 55.000 12.15 0.00 32.04 3.16
1859 2506 0.467804 GGTGAGCTCCATTCCTCCTC 59.532 60.000 12.15 0.00 0.00 3.71
1863 2510 2.114616 GAGCTCCATTCCTCCTCTTCA 58.885 52.381 0.87 0.00 0.00 3.02
1865 2512 2.705127 AGCTCCATTCCTCCTCTTCATC 59.295 50.000 0.00 0.00 0.00 2.92
1868 2515 2.774234 TCCATTCCTCCTCTTCATCCAC 59.226 50.000 0.00 0.00 0.00 4.02
1883 2530 3.461773 CACCCACCCGCTCGATCT 61.462 66.667 0.00 0.00 0.00 2.75
1904 2882 2.369860 TGATCTCCCGATCCAATCCAAG 59.630 50.000 0.00 0.00 44.40 3.61
1921 2899 0.108585 AAGCCTGTACCACCACTGTG 59.891 55.000 0.00 0.00 42.39 3.66
1922 2900 1.966451 GCCTGTACCACCACTGTGC 60.966 63.158 1.29 0.00 41.35 4.57
1923 2901 1.754745 CCTGTACCACCACTGTGCT 59.245 57.895 1.29 0.00 41.35 4.40
1924 2902 0.973632 CCTGTACCACCACTGTGCTA 59.026 55.000 1.29 0.00 41.35 3.49
1925 2903 1.066858 CCTGTACCACCACTGTGCTAG 60.067 57.143 1.29 0.00 41.35 3.42
1937 2915 0.679505 TGTGCTAGACCAGACCACAC 59.320 55.000 0.00 0.00 0.00 3.82
1963 2941 3.181506 GGCCAGAATTCAATCTTGTCGAC 60.182 47.826 9.11 9.11 0.00 4.20
1965 2943 3.062639 CCAGAATTCAATCTTGTCGACCG 59.937 47.826 14.12 4.24 0.00 4.79
1973 2951 3.934391 CTTGTCGACCGAGTGGGCC 62.934 68.421 14.12 0.00 42.08 5.80
1975 2953 4.436998 GTCGACCGAGTGGGCCAG 62.437 72.222 6.40 0.00 42.08 4.85
1976 2954 4.671590 TCGACCGAGTGGGCCAGA 62.672 66.667 6.40 0.00 42.08 3.86
1977 2955 4.135153 CGACCGAGTGGGCCAGAG 62.135 72.222 6.40 0.23 42.08 3.35
1978 2956 4.459089 GACCGAGTGGGCCAGAGC 62.459 72.222 6.40 0.00 37.27 4.09
1980 2958 4.463879 CCGAGTGGGCCAGAGCAG 62.464 72.222 6.40 0.00 42.56 4.24
1981 2959 3.385384 CGAGTGGGCCAGAGCAGA 61.385 66.667 6.40 0.00 42.56 4.26
1982 2960 2.583520 GAGTGGGCCAGAGCAGAG 59.416 66.667 6.40 0.00 42.56 3.35
1988 2966 1.143620 GGCCAGAGCAGAGTAGCAG 59.856 63.158 0.00 0.00 42.56 4.24
2017 3008 1.939934 CGACCTTGCAAGTTGTCTGAA 59.060 47.619 24.35 0.00 0.00 3.02
2018 3009 2.549754 CGACCTTGCAAGTTGTCTGAAT 59.450 45.455 24.35 0.00 0.00 2.57
2019 3010 3.003689 CGACCTTGCAAGTTGTCTGAATT 59.996 43.478 24.35 0.00 0.00 2.17
2020 3011 4.498009 CGACCTTGCAAGTTGTCTGAATTT 60.498 41.667 24.35 0.00 0.00 1.82
2027 3018 7.176285 TGCAAGTTGTCTGAATTTATTTTGC 57.824 32.000 4.48 0.00 38.07 3.68
2044 3035 0.249615 TGCTATGATCGCTGGTCTGC 60.250 55.000 0.00 0.00 0.00 4.26
2110 3166 2.434774 GTTCCGGGTCAAGGCCTT 59.565 61.111 13.78 13.78 0.00 4.35
2205 3461 0.530288 TTAGCCAGCCGCAAATTTCC 59.470 50.000 0.00 0.00 41.38 3.13
2215 3471 4.000325 GCCGCAAATTTCCCTTTGTTTAT 59.000 39.130 0.00 0.00 38.19 1.40
2216 3472 4.454161 GCCGCAAATTTCCCTTTGTTTATT 59.546 37.500 0.00 0.00 38.19 1.40
2217 3473 5.639931 GCCGCAAATTTCCCTTTGTTTATTA 59.360 36.000 0.00 0.00 38.19 0.98
2218 3474 6.315144 GCCGCAAATTTCCCTTTGTTTATTAT 59.685 34.615 0.00 0.00 38.19 1.28
2259 3608 1.280746 CGGCTGTTGCACAAGTCTG 59.719 57.895 0.00 0.00 41.91 3.51
2350 3699 5.705441 ACATCCCAACCACTATTATAATGCG 59.295 40.000 8.28 2.12 0.00 4.73
2459 3822 4.094590 CACCATCATCTCTGCTCAAAGTTC 59.905 45.833 0.00 0.00 0.00 3.01
2460 3823 4.259356 CCATCATCTCTGCTCAAAGTTCA 58.741 43.478 0.00 0.00 0.00 3.18
2482 3845 6.826668 TCAGAGTGTAATCCAGTTCAAGAAA 58.173 36.000 0.00 0.00 0.00 2.52
2488 3851 8.624776 AGTGTAATCCAGTTCAAGAAAAAGAAG 58.375 33.333 0.00 0.00 0.00 2.85
2526 3889 5.983720 TCAGTTCGAGTAAAAGAAGTTCAGG 59.016 40.000 5.50 0.00 0.00 3.86
2552 3915 7.296628 TGTATAATTTGCTGACCTTGGTTTT 57.703 32.000 0.00 0.00 0.00 2.43
2557 3920 1.962807 TGCTGACCTTGGTTTTGATGG 59.037 47.619 0.00 0.00 0.00 3.51
2563 3926 1.895131 CCTTGGTTTTGATGGTCTGGG 59.105 52.381 0.00 0.00 0.00 4.45
2720 4083 4.719369 ACGGCCAAGAGCGACGTC 62.719 66.667 5.18 5.18 45.17 4.34
3216 4588 4.227134 CCCCGGGCGTGATCTGAG 62.227 72.222 17.73 0.00 0.00 3.35
3218 4590 4.147449 CCGGGCGTGATCTGAGCA 62.147 66.667 0.00 0.00 0.00 4.26
3220 4592 2.202987 GGGCGTGATCTGAGCAGG 60.203 66.667 10.93 10.93 0.00 4.85
3222 4594 2.725312 GGCGTGATCTGAGCAGGGA 61.725 63.158 16.13 0.00 0.00 4.20
3223 4595 1.520342 GCGTGATCTGAGCAGGGAC 60.520 63.158 16.13 0.00 0.00 4.46
3224 4596 1.954362 GCGTGATCTGAGCAGGGACT 61.954 60.000 16.13 0.00 43.88 3.85
3225 4597 0.102120 CGTGATCTGAGCAGGGACTC 59.898 60.000 7.66 0.00 34.60 3.36
3226 4598 0.463620 GTGATCTGAGCAGGGACTCC 59.536 60.000 0.00 0.00 34.60 3.85
3229 4601 0.337773 ATCTGAGCAGGGACTCCAGA 59.662 55.000 0.00 0.00 34.60 3.86
3230 4602 0.613292 TCTGAGCAGGGACTCCAGAC 60.613 60.000 0.00 0.00 34.60 3.51
3259 4637 2.546795 GGTGCATAGAGACGAGGGATTG 60.547 54.545 0.00 0.00 0.00 2.67
3336 4715 6.716173 TGGTGATGTCATTTCATTCTCTCAAA 59.284 34.615 0.00 0.00 0.00 2.69
3349 4728 6.942576 TCATTCTCTCAAAGAACTTTTAGGGG 59.057 38.462 8.04 3.72 46.61 4.79
3383 4763 8.969121 TGTATTTCAGTTTTGTTGCTGATATG 57.031 30.769 0.00 0.00 40.83 1.78
3400 4783 6.538945 TGATATGTGTACTGCCAAGAGTAA 57.461 37.500 0.00 0.00 30.16 2.24
3453 4840 8.253113 CCTGTATTATGAAAGTTTGAGGCAATT 58.747 33.333 0.00 0.00 0.00 2.32
3473 4860 9.030301 GGCAATTATACATGGTAAAATGTTCAC 57.970 33.333 0.00 0.00 41.09 3.18
3481 4868 7.206687 ACATGGTAAAATGTTCACGTGAATTT 58.793 30.769 31.81 27.26 37.50 1.82
3482 4869 7.708752 ACATGGTAAAATGTTCACGTGAATTTT 59.291 29.630 30.35 30.35 37.50 1.82
3483 4870 7.456684 TGGTAAAATGTTCACGTGAATTTTG 57.543 32.000 32.79 6.71 36.33 2.44
3484 4871 7.258441 TGGTAAAATGTTCACGTGAATTTTGA 58.742 30.769 32.79 25.22 36.33 2.69
3485 4872 7.759886 TGGTAAAATGTTCACGTGAATTTTGAA 59.240 29.630 32.79 23.37 36.33 2.69
3486 4873 8.760569 GGTAAAATGTTCACGTGAATTTTGAAT 58.239 29.630 32.79 22.73 36.33 2.57
3487 4874 9.566624 GTAAAATGTTCACGTGAATTTTGAATG 57.433 29.630 32.79 4.36 36.33 2.67
3488 4875 6.768029 AATGTTCACGTGAATTTTGAATGG 57.232 33.333 31.81 0.00 36.33 3.16
3489 4876 5.506686 TGTTCACGTGAATTTTGAATGGA 57.493 34.783 31.81 4.08 36.33 3.41
3490 4877 6.083098 TGTTCACGTGAATTTTGAATGGAT 57.917 33.333 31.81 0.00 36.33 3.41
3491 4878 6.511416 TGTTCACGTGAATTTTGAATGGATT 58.489 32.000 31.81 0.00 36.33 3.01
3492 4879 6.983307 TGTTCACGTGAATTTTGAATGGATTT 59.017 30.769 31.81 0.00 36.33 2.17
3493 4880 7.493971 TGTTCACGTGAATTTTGAATGGATTTT 59.506 29.630 31.81 0.00 36.33 1.82
3494 4881 8.334632 GTTCACGTGAATTTTGAATGGATTTTT 58.665 29.630 31.81 0.00 36.33 1.94
3534 4921 8.984891 TTTGCATCAAATTTTATAGGACTGTG 57.015 30.769 0.00 0.00 0.00 3.66
3535 4922 6.563422 TGCATCAAATTTTATAGGACTGTGC 58.437 36.000 0.00 0.00 0.00 4.57
3536 4923 6.377996 TGCATCAAATTTTATAGGACTGTGCT 59.622 34.615 7.10 7.10 0.00 4.40
3537 4924 7.555914 TGCATCAAATTTTATAGGACTGTGCTA 59.444 33.333 11.53 11.53 0.00 3.49
3538 4925 8.405531 GCATCAAATTTTATAGGACTGTGCTAA 58.594 33.333 13.10 0.00 0.00 3.09
3539 4926 9.722056 CATCAAATTTTATAGGACTGTGCTAAC 57.278 33.333 13.10 0.00 0.00 2.34
3540 4927 7.970384 TCAAATTTTATAGGACTGTGCTAACG 58.030 34.615 13.10 0.00 0.00 3.18
3541 4928 7.820386 TCAAATTTTATAGGACTGTGCTAACGA 59.180 33.333 13.10 0.00 0.00 3.85
3542 4929 7.535489 AATTTTATAGGACTGTGCTAACGAC 57.465 36.000 13.10 0.00 0.00 4.34
3543 4930 4.644103 TTATAGGACTGTGCTAACGACC 57.356 45.455 13.10 0.00 0.00 4.79
3544 4931 1.913778 TAGGACTGTGCTAACGACCA 58.086 50.000 6.57 0.00 0.00 4.02
3545 4932 0.603569 AGGACTGTGCTAACGACCAG 59.396 55.000 0.00 0.00 0.00 4.00
3546 4933 0.317479 GGACTGTGCTAACGACCAGT 59.683 55.000 0.00 0.00 40.67 4.00
3547 4934 1.699343 GACTGTGCTAACGACCAGTC 58.301 55.000 0.00 0.00 44.75 3.51
3578 4965 2.657296 CGACACGCACGACCAGTT 60.657 61.111 0.00 0.00 0.00 3.16
3579 4966 2.235016 CGACACGCACGACCAGTTT 61.235 57.895 0.00 0.00 0.00 2.66
3580 4967 1.563173 GACACGCACGACCAGTTTC 59.437 57.895 0.00 0.00 0.00 2.78
3581 4968 1.828331 GACACGCACGACCAGTTTCC 61.828 60.000 0.00 0.00 0.00 3.13
3582 4969 2.280592 ACGCACGACCAGTTTCCC 60.281 61.111 0.00 0.00 0.00 3.97
3583 4970 2.280524 CGCACGACCAGTTTCCCA 60.281 61.111 0.00 0.00 0.00 4.37
3640 5027 9.537848 CTTAAAAACCGTAGTAAATTGCTAGTG 57.462 33.333 0.00 0.00 0.00 2.74
3641 5028 7.500720 AAAAACCGTAGTAAATTGCTAGTGT 57.499 32.000 0.00 0.00 0.00 3.55
3778 5172 6.867293 CCTATCGAGCCTAATAACCAACTAAC 59.133 42.308 0.00 0.00 0.00 2.34
3976 5372 5.278758 CGAGAAAGTTAAAAGCATGGGGAAA 60.279 40.000 0.00 0.00 0.00 3.13
4205 5602 9.083422 TGGGAGTTATCAATTTTGTATGTTTCA 57.917 29.630 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 2.278206 CGACTCCCAGCACGATCG 60.278 66.667 14.88 14.88 0.00 3.69
13 14 2.583593 GCGACTCCCAGCACGATC 60.584 66.667 0.00 0.00 0.00 3.69
14 15 2.842394 CTTGCGACTCCCAGCACGAT 62.842 60.000 0.00 0.00 43.69 3.73
15 16 3.573772 CTTGCGACTCCCAGCACGA 62.574 63.158 0.00 0.00 43.69 4.35
26 27 0.179240 CAAGCACACGATCTTGCGAC 60.179 55.000 0.00 0.00 43.87 5.19
39 40 1.077429 GGGGGATGAGGACAAGCAC 60.077 63.158 0.00 0.00 0.00 4.40
60 61 6.647895 TCGTGCGTGTTCTGTAGATAGATATA 59.352 38.462 0.00 0.00 0.00 0.86
61 62 5.469084 TCGTGCGTGTTCTGTAGATAGATAT 59.531 40.000 0.00 0.00 0.00 1.63
72 73 2.222931 TGTCTTTTTCGTGCGTGTTCTG 60.223 45.455 0.00 0.00 0.00 3.02
102 105 5.743636 TGGTTAACCGTTCCTTACATAGT 57.256 39.130 19.65 0.00 39.43 2.12
103 106 6.168389 AGTTGGTTAACCGTTCCTTACATAG 58.832 40.000 19.65 0.00 37.52 2.23
104 107 6.112927 AGTTGGTTAACCGTTCCTTACATA 57.887 37.500 19.65 0.00 37.52 2.29
105 108 4.976864 AGTTGGTTAACCGTTCCTTACAT 58.023 39.130 19.65 0.00 37.52 2.29
106 109 4.379652 GAGTTGGTTAACCGTTCCTTACA 58.620 43.478 19.65 0.00 37.52 2.41
149 152 0.248661 CATAGCAGGAGTGGTCGTCG 60.249 60.000 0.00 0.00 35.51 5.12
150 153 0.528684 GCATAGCAGGAGTGGTCGTC 60.529 60.000 0.00 0.00 35.51 4.20
151 154 0.972983 AGCATAGCAGGAGTGGTCGT 60.973 55.000 0.00 0.00 35.51 4.34
178 181 4.181010 CTCCACGCAGGGGATGGG 62.181 72.222 0.00 0.00 42.25 4.00
185 188 1.884235 ACTTTCTTTCTCCACGCAGG 58.116 50.000 0.00 0.00 39.47 4.85
186 189 2.031682 CCAACTTTCTTTCTCCACGCAG 60.032 50.000 0.00 0.00 0.00 5.18
187 190 1.946768 CCAACTTTCTTTCTCCACGCA 59.053 47.619 0.00 0.00 0.00 5.24
188 191 2.218603 TCCAACTTTCTTTCTCCACGC 58.781 47.619 0.00 0.00 0.00 5.34
189 192 4.320494 CCATTCCAACTTTCTTTCTCCACG 60.320 45.833 0.00 0.00 0.00 4.94
206 209 0.041090 ACCCACCAACCATCCATTCC 59.959 55.000 0.00 0.00 0.00 3.01
270 273 1.167851 CTTGGTGAACGGTGATGCAT 58.832 50.000 0.00 0.00 0.00 3.96
271 274 0.888736 CCTTGGTGAACGGTGATGCA 60.889 55.000 0.00 0.00 0.00 3.96
272 275 1.875963 CCTTGGTGAACGGTGATGC 59.124 57.895 0.00 0.00 0.00 3.91
280 283 3.010420 CCTAGCTAAAGCCTTGGTGAAC 58.990 50.000 0.00 0.00 43.38 3.18
329 332 3.119919 CCAAAGCAAAGCAAAGCAAAACA 60.120 39.130 0.00 0.00 0.00 2.83
330 333 3.119884 ACCAAAGCAAAGCAAAGCAAAAC 60.120 39.130 0.00 0.00 0.00 2.43
331 334 3.080319 ACCAAAGCAAAGCAAAGCAAAA 58.920 36.364 0.00 0.00 0.00 2.44
332 335 2.677337 GACCAAAGCAAAGCAAAGCAAA 59.323 40.909 0.00 0.00 0.00 3.68
333 336 2.278854 GACCAAAGCAAAGCAAAGCAA 58.721 42.857 0.00 0.00 0.00 3.91
334 337 1.473080 GGACCAAAGCAAAGCAAAGCA 60.473 47.619 0.00 0.00 0.00 3.91
335 338 1.202568 AGGACCAAAGCAAAGCAAAGC 60.203 47.619 0.00 0.00 0.00 3.51
336 339 2.363359 AGAGGACCAAAGCAAAGCAAAG 59.637 45.455 0.00 0.00 0.00 2.77
337 340 2.387757 AGAGGACCAAAGCAAAGCAAA 58.612 42.857 0.00 0.00 0.00 3.68
338 341 2.071778 AGAGGACCAAAGCAAAGCAA 57.928 45.000 0.00 0.00 0.00 3.91
339 342 2.949177 TAGAGGACCAAAGCAAAGCA 57.051 45.000 0.00 0.00 0.00 3.91
350 353 6.591935 TCACACCAATAATGAATAGAGGACC 58.408 40.000 0.00 0.00 0.00 4.46
352 355 6.767902 GCTTCACACCAATAATGAATAGAGGA 59.232 38.462 0.00 0.00 32.16 3.71
368 371 1.269723 GGCCAAAAGTAGCTTCACACC 59.730 52.381 0.00 0.00 0.00 4.16
371 374 1.953686 TGTGGCCAAAAGTAGCTTCAC 59.046 47.619 7.24 0.00 0.00 3.18
379 382 7.504574 AGTTAGTTAATTAGTGTGGCCAAAAGT 59.495 33.333 7.24 4.36 0.00 2.66
450 453 7.610305 CCCACTAAAGTTCAAATTCTAGCCTTA 59.390 37.037 0.00 0.00 0.00 2.69
524 527 2.167693 TGAACGAATATCGCTGGAAGGT 59.832 45.455 0.00 0.00 45.12 3.50
527 530 6.912203 TTTATTGAACGAATATCGCTGGAA 57.088 33.333 0.00 0.00 45.12 3.53
531 534 6.920569 ACCTTTTATTGAACGAATATCGCT 57.079 33.333 0.00 0.00 45.12 4.93
548 551 7.290014 AGTGGAGGAAATGAAATGTAACCTTTT 59.710 33.333 0.00 0.00 0.00 2.27
550 553 6.314917 AGTGGAGGAAATGAAATGTAACCTT 58.685 36.000 0.00 0.00 0.00 3.50
554 557 8.737168 CTCATAGTGGAGGAAATGAAATGTAA 57.263 34.615 0.00 0.00 0.00 2.41
568 571 0.387202 CAGACGCCCTCATAGTGGAG 59.613 60.000 0.00 0.00 34.62 3.86
575 578 3.320879 CTGCCACAGACGCCCTCAT 62.321 63.158 0.00 0.00 32.44 2.90
576 579 4.007644 CTGCCACAGACGCCCTCA 62.008 66.667 0.00 0.00 32.44 3.86
590 593 6.530913 TTATTCTCATATTGACGAAGCTGC 57.469 37.500 0.00 0.00 0.00 5.25
604 607 6.210385 AGACTGAGCGGACATATTATTCTCAT 59.790 38.462 0.00 0.00 0.00 2.90
606 609 6.019779 AGACTGAGCGGACATATTATTCTC 57.980 41.667 0.00 0.00 0.00 2.87
608 611 6.019779 AGAGACTGAGCGGACATATTATTC 57.980 41.667 0.00 0.00 0.00 1.75
609 612 6.412362 AAGAGACTGAGCGGACATATTATT 57.588 37.500 0.00 0.00 0.00 1.40
612 615 5.854010 TTAAGAGACTGAGCGGACATATT 57.146 39.130 0.00 0.00 0.00 1.28
613 616 5.854010 TTTAAGAGACTGAGCGGACATAT 57.146 39.130 0.00 0.00 0.00 1.78
618 621 5.147330 TGAATTTTAAGAGACTGAGCGGA 57.853 39.130 0.00 0.00 0.00 5.54
620 623 8.136057 ACATATGAATTTTAAGAGACTGAGCG 57.864 34.615 10.38 0.00 0.00 5.03
627 630 7.919091 ACGCTCGTACATATGAATTTTAAGAGA 59.081 33.333 10.38 0.00 0.00 3.10
632 635 6.074516 GCAGACGCTCGTACATATGAATTTTA 60.075 38.462 10.38 0.00 34.30 1.52
633 636 5.276868 GCAGACGCTCGTACATATGAATTTT 60.277 40.000 10.38 0.00 34.30 1.82
634 637 4.209288 GCAGACGCTCGTACATATGAATTT 59.791 41.667 10.38 0.00 34.30 1.82
636 639 3.309388 GCAGACGCTCGTACATATGAAT 58.691 45.455 10.38 0.00 34.30 2.57
637 640 2.727777 GCAGACGCTCGTACATATGAA 58.272 47.619 10.38 0.00 34.30 2.57
638 641 1.333791 CGCAGACGCTCGTACATATGA 60.334 52.381 10.38 0.00 35.30 2.15
647 998 1.011684 CTAGAGACGCAGACGCTCG 60.012 63.158 0.00 0.00 45.53 5.03
657 1008 8.219436 TCGTTTATTTTAACACACTAGAGACG 57.781 34.615 0.00 0.00 0.00 4.18
665 1016 5.449304 AGCAGCTCGTTTATTTTAACACAC 58.551 37.500 0.00 0.00 0.00 3.82
671 1022 6.310467 CACAGTAGAGCAGCTCGTTTATTTTA 59.690 38.462 16.99 0.00 35.36 1.52
673 1024 4.627467 CACAGTAGAGCAGCTCGTTTATTT 59.373 41.667 16.99 0.00 35.36 1.40
674 1025 4.177026 CACAGTAGAGCAGCTCGTTTATT 58.823 43.478 16.99 0.61 35.36 1.40
675 1026 3.193691 ACACAGTAGAGCAGCTCGTTTAT 59.806 43.478 16.99 1.38 35.36 1.40
676 1027 2.557056 ACACAGTAGAGCAGCTCGTTTA 59.443 45.455 16.99 1.11 35.36 2.01
677 1028 1.341531 ACACAGTAGAGCAGCTCGTTT 59.658 47.619 16.99 2.16 35.36 3.60
678 1029 0.962489 ACACAGTAGAGCAGCTCGTT 59.038 50.000 16.99 2.94 35.36 3.85
679 1030 0.962489 AACACAGTAGAGCAGCTCGT 59.038 50.000 16.99 5.82 35.36 4.18
680 1031 2.921634 TAACACAGTAGAGCAGCTCG 57.078 50.000 16.99 5.14 35.36 5.03
681 1032 5.924475 TTTTTAACACAGTAGAGCAGCTC 57.076 39.130 15.25 15.25 0.00 4.09
682 1033 7.979444 TTATTTTTAACACAGTAGAGCAGCT 57.021 32.000 0.00 0.00 0.00 4.24
683 1034 8.073768 TGTTTATTTTTAACACAGTAGAGCAGC 58.926 33.333 0.00 0.00 30.96 5.25
684 1035 9.944663 TTGTTTATTTTTAACACAGTAGAGCAG 57.055 29.630 0.00 0.00 35.39 4.24
685 1036 9.944663 CTTGTTTATTTTTAACACAGTAGAGCA 57.055 29.630 0.00 0.00 35.39 4.26
686 1037 8.902735 GCTTGTTTATTTTTAACACAGTAGAGC 58.097 33.333 0.00 0.00 35.39 4.09
688 1039 9.944663 CAGCTTGTTTATTTTTAACACAGTAGA 57.055 29.630 0.00 0.00 35.39 2.59
689 1040 8.690840 GCAGCTTGTTTATTTTTAACACAGTAG 58.309 33.333 0.00 0.00 35.39 2.57
690 1041 7.377397 CGCAGCTTGTTTATTTTTAACACAGTA 59.623 33.333 0.00 0.00 35.39 2.74
691 1042 6.198216 CGCAGCTTGTTTATTTTTAACACAGT 59.802 34.615 0.00 0.00 35.39 3.55
900 1436 0.946221 GTGGTCTGCGACTTCTGTGG 60.946 60.000 8.26 0.00 32.47 4.17
971 1521 0.030638 TTCTTGCGCTTTGTTGCTCC 59.969 50.000 9.73 0.00 0.00 4.70
972 1522 1.402511 CTTCTTGCGCTTTGTTGCTC 58.597 50.000 9.73 0.00 0.00 4.26
973 1523 0.595825 GCTTCTTGCGCTTTGTTGCT 60.596 50.000 9.73 0.00 0.00 3.91
974 1524 1.848640 GCTTCTTGCGCTTTGTTGC 59.151 52.632 9.73 2.34 0.00 4.17
991 1541 3.140814 GAACCCCATGGCTTCCGC 61.141 66.667 6.09 0.00 33.59 5.54
992 1542 1.750399 CTGAACCCCATGGCTTCCG 60.750 63.158 6.09 1.97 33.59 4.30
1161 1715 4.681978 AAGGCGTGCAGGGTCGTC 62.682 66.667 8.72 0.00 0.00 4.20
1164 1718 3.050275 GTGAAGGCGTGCAGGGTC 61.050 66.667 8.72 0.00 0.00 4.46
1185 1739 1.512310 GACGGACTTGAGCTCGTCG 60.512 63.158 9.64 10.33 41.60 5.12
1387 1941 1.132262 GATTGAAAATCTTGCGGCGGA 59.868 47.619 9.78 1.34 0.00 5.54
1389 1943 2.179589 CTGATTGAAAATCTTGCGGCG 58.820 47.619 0.51 0.51 0.00 6.46
1390 1944 3.174375 GACTGATTGAAAATCTTGCGGC 58.826 45.455 0.00 0.00 0.00 6.53
1402 1961 2.032634 GCGGTTGGCGACTGATTGA 61.033 57.895 18.08 0.00 36.72 2.57
1430 1989 9.553064 ACATGAACATGATTAGATTAGGAGAAC 57.447 33.333 19.56 0.00 41.20 3.01
1436 1995 7.358066 GCCACACATGAACATGATTAGATTAG 58.642 38.462 19.56 2.35 41.20 1.73
1445 2004 0.873721 CACGCCACACATGAACATGA 59.126 50.000 19.56 0.00 41.20 3.07
1451 2010 0.321346 ATCAGTCACGCCACACATGA 59.679 50.000 0.00 0.00 0.00 3.07
1452 2011 0.723414 GATCAGTCACGCCACACATG 59.277 55.000 0.00 0.00 0.00 3.21
1453 2012 0.391661 GGATCAGTCACGCCACACAT 60.392 55.000 0.00 0.00 0.00 3.21
1454 2013 1.005037 GGATCAGTCACGCCACACA 60.005 57.895 0.00 0.00 0.00 3.72
1455 2014 0.391661 ATGGATCAGTCACGCCACAC 60.392 55.000 0.00 0.00 32.42 3.82
1457 2016 0.108186 TGATGGATCAGTCACGCCAC 60.108 55.000 0.00 0.00 32.42 5.01
1469 2028 2.446848 CCACCTCCGCCTGATGGAT 61.447 63.158 0.00 0.00 34.32 3.41
1472 2031 1.613317 TACACCACCTCCGCCTGATG 61.613 60.000 0.00 0.00 0.00 3.07
1474 2033 1.305802 ATACACCACCTCCGCCTGA 60.306 57.895 0.00 0.00 0.00 3.86
1643 2223 5.633927 TCGATCGTCGAACAAGAAATAAGA 58.366 37.500 15.94 0.00 46.90 2.10
1688 2277 2.434884 ATCTGCAACGGCCAGTCG 60.435 61.111 2.24 0.00 40.13 4.18
1690 2279 2.045926 GGATCTGCAACGGCCAGT 60.046 61.111 2.24 0.00 40.13 4.00
1691 2280 3.197790 CGGATCTGCAACGGCCAG 61.198 66.667 2.24 0.00 40.13 4.85
1694 2283 3.869272 CAGCGGATCTGCAACGGC 61.869 66.667 27.81 0.09 35.78 5.68
1695 2284 3.197790 CCAGCGGATCTGCAACGG 61.198 66.667 27.81 19.94 41.50 4.44
1696 2285 3.869272 GCCAGCGGATCTGCAACG 61.869 66.667 27.81 15.25 41.50 4.10
1786 2379 1.436336 GTAGATGACGGGGGTGTCG 59.564 63.158 0.00 0.00 41.87 4.35
1792 2385 3.214123 TCGCGGTAGATGACGGGG 61.214 66.667 6.13 0.00 42.35 5.73
1852 2499 0.417437 TGGGTGGATGAAGAGGAGGA 59.583 55.000 0.00 0.00 0.00 3.71
1859 2506 2.438434 GCGGGTGGGTGGATGAAG 60.438 66.667 0.00 0.00 0.00 3.02
1865 2512 4.530857 GATCGAGCGGGTGGGTGG 62.531 72.222 0.00 0.00 0.00 4.61
1868 2515 2.427540 GATCAGATCGAGCGGGTGGG 62.428 65.000 0.00 0.00 0.00 4.61
1904 2882 1.966451 GCACAGTGGTGGTACAGGC 60.966 63.158 1.84 0.00 45.38 4.85
1921 2899 0.247736 CAGGTGTGGTCTGGTCTAGC 59.752 60.000 0.00 0.00 0.00 3.42
1922 2900 0.898320 CCAGGTGTGGTCTGGTCTAG 59.102 60.000 2.21 0.00 44.97 2.43
1923 2901 3.067011 CCAGGTGTGGTCTGGTCTA 57.933 57.895 2.21 0.00 44.97 2.59
1924 2902 3.891817 CCAGGTGTGGTCTGGTCT 58.108 61.111 2.21 0.00 44.97 3.85
1937 2915 2.429610 CAAGATTGAATTCTGGCCCAGG 59.570 50.000 11.68 0.00 31.51 4.45
1941 2919 3.009723 TCGACAAGATTGAATTCTGGCC 58.990 45.455 7.05 0.00 0.00 5.36
1963 2941 4.463879 CTGCTCTGGCCCACTCGG 62.464 72.222 0.00 0.00 37.74 4.63
1965 2943 0.972983 TACTCTGCTCTGGCCCACTC 60.973 60.000 0.00 0.00 37.74 3.51
1973 2951 0.100325 CGACCTGCTACTCTGCTCTG 59.900 60.000 0.00 0.00 0.00 3.35
1974 2952 1.662438 GCGACCTGCTACTCTGCTCT 61.662 60.000 0.00 0.00 41.73 4.09
1975 2953 1.226831 GCGACCTGCTACTCTGCTC 60.227 63.158 0.00 0.00 41.73 4.26
1976 2954 2.716017 GGCGACCTGCTACTCTGCT 61.716 63.158 0.00 0.00 45.43 4.24
1977 2955 2.202810 GGCGACCTGCTACTCTGC 60.203 66.667 0.00 0.00 45.43 4.26
1978 2956 2.103143 CGGCGACCTGCTACTCTG 59.897 66.667 0.00 0.00 45.43 3.35
1979 2957 2.361357 ACGGCGACCTGCTACTCT 60.361 61.111 16.62 0.00 45.43 3.24
1980 2958 2.102553 GACGGCGACCTGCTACTC 59.897 66.667 16.62 0.00 45.43 2.59
1981 2959 3.812019 CGACGGCGACCTGCTACT 61.812 66.667 16.62 0.00 45.43 2.57
1982 2960 3.807538 TCGACGGCGACCTGCTAC 61.808 66.667 10.67 0.00 42.51 3.58
2001 2979 7.795272 GCAAAATAAATTCAGACAACTTGCAAG 59.205 33.333 24.84 24.84 36.37 4.01
2017 3008 6.488006 AGACCAGCGATCATAGCAAAATAAAT 59.512 34.615 0.00 0.00 37.01 1.40
2018 3009 5.822519 AGACCAGCGATCATAGCAAAATAAA 59.177 36.000 0.00 0.00 37.01 1.40
2019 3010 5.237127 CAGACCAGCGATCATAGCAAAATAA 59.763 40.000 0.00 0.00 37.01 1.40
2020 3011 4.751600 CAGACCAGCGATCATAGCAAAATA 59.248 41.667 0.00 0.00 37.01 1.40
2027 3018 1.665448 CGAGCAGACCAGCGATCATAG 60.665 57.143 0.00 0.00 40.15 2.23
2032 3023 4.521062 GGCGAGCAGACCAGCGAT 62.521 66.667 0.00 0.00 40.15 4.58
2110 3166 5.180117 GCTTCTCTGAATTGTAAACTGAGCA 59.820 40.000 0.00 0.00 32.43 4.26
2215 3471 9.066892 GGCATCTAGAATCAACAATAACCATAA 57.933 33.333 0.00 0.00 0.00 1.90
2216 3472 7.387673 CGGCATCTAGAATCAACAATAACCATA 59.612 37.037 0.00 0.00 0.00 2.74
2217 3473 6.205464 CGGCATCTAGAATCAACAATAACCAT 59.795 38.462 0.00 0.00 0.00 3.55
2218 3474 5.527214 CGGCATCTAGAATCAACAATAACCA 59.473 40.000 0.00 0.00 0.00 3.67
2350 3699 1.590792 GTATGGGCGTACCGTCTGC 60.591 63.158 0.00 0.00 44.64 4.26
2363 3712 2.485426 CTCAATAATGCCGCTGGTATGG 59.515 50.000 0.00 0.00 0.00 2.74
2368 3717 0.947244 GACCTCAATAATGCCGCTGG 59.053 55.000 0.00 0.00 0.00 4.85
2459 3822 7.496529 TTTTCTTGAACTGGATTACACTCTG 57.503 36.000 0.00 0.00 0.00 3.35
2460 3823 7.993183 TCTTTTTCTTGAACTGGATTACACTCT 59.007 33.333 0.00 0.00 0.00 3.24
2482 3845 7.872113 ACTGAATTTCACTCTGAACTTCTTT 57.128 32.000 13.21 2.13 42.73 2.52
2488 3851 5.463724 ACTCGAACTGAATTTCACTCTGAAC 59.536 40.000 0.00 0.00 35.89 3.18
2526 3889 6.267496 ACCAAGGTCAGCAAATTATACAAC 57.733 37.500 0.00 0.00 0.00 3.32
2552 3915 0.251297 CCTGCAAACCCAGACCATCA 60.251 55.000 0.00 0.00 34.77 3.07
2557 3920 1.809684 GTAGTCCTGCAAACCCAGAC 58.190 55.000 0.00 0.00 34.77 3.51
2563 3926 3.023591 GCCGCGTAGTCCTGCAAAC 62.024 63.158 4.92 0.00 0.00 2.93
2618 3981 4.308458 TGCGTGTCGTCCCCCTTG 62.308 66.667 0.00 0.00 0.00 3.61
2720 4083 1.079127 CACCACCCCGAAGCTGTAG 60.079 63.158 0.00 0.00 0.00 2.74
3206 4578 0.102120 GAGTCCCTGCTCAGATCACG 59.898 60.000 0.00 0.00 35.67 4.35
3216 4588 1.079750 GTTCGTCTGGAGTCCCTGC 60.080 63.158 6.74 0.00 0.00 4.85
3218 4590 0.612453 GGAGTTCGTCTGGAGTCCCT 60.612 60.000 6.74 0.00 0.00 4.20
3220 4592 1.507174 CGGAGTTCGTCTGGAGTCC 59.493 63.158 0.73 0.73 0.00 3.85
3226 4598 0.172578 TATGCACCGGAGTTCGTCTG 59.827 55.000 9.46 0.00 37.11 3.51
3229 4601 0.456221 CTCTATGCACCGGAGTTCGT 59.544 55.000 9.46 0.00 37.11 3.85
3230 4602 0.738975 TCTCTATGCACCGGAGTTCG 59.261 55.000 9.46 0.00 38.88 3.95
3259 4637 3.486108 CAGATCGTCACTATTTACACCGC 59.514 47.826 0.00 0.00 0.00 5.68
3336 4715 5.131977 ACAAAATTTGCCCCCTAAAAGTTCT 59.868 36.000 5.52 0.00 0.00 3.01
3349 4728 9.008289 CAACAAAACTGAAATACAAAATTTGCC 57.992 29.630 5.52 0.00 33.09 4.52
3383 4763 3.187700 CGGATTACTCTTGGCAGTACAC 58.812 50.000 0.00 0.00 0.00 2.90
3453 4840 8.549338 TTCACGTGAACATTTTACCATGTATA 57.451 30.769 26.53 0.00 36.30 1.47
3508 4895 9.590451 CACAGTCCTATAAAATTTGATGCAAAT 57.410 29.630 0.00 0.00 44.62 2.32
3509 4896 7.545265 GCACAGTCCTATAAAATTTGATGCAAA 59.455 33.333 0.00 0.00 37.75 3.68
3510 4897 7.035004 GCACAGTCCTATAAAATTTGATGCAA 58.965 34.615 0.00 0.00 0.00 4.08
3511 4898 6.377996 AGCACAGTCCTATAAAATTTGATGCA 59.622 34.615 0.00 0.00 0.00 3.96
3512 4899 6.799512 AGCACAGTCCTATAAAATTTGATGC 58.200 36.000 0.00 0.00 0.00 3.91
3513 4900 9.722056 GTTAGCACAGTCCTATAAAATTTGATG 57.278 33.333 0.00 0.00 0.00 3.07
3514 4901 8.612619 CGTTAGCACAGTCCTATAAAATTTGAT 58.387 33.333 0.00 0.00 0.00 2.57
3515 4902 7.820386 TCGTTAGCACAGTCCTATAAAATTTGA 59.180 33.333 0.00 0.00 0.00 2.69
3516 4903 7.903431 GTCGTTAGCACAGTCCTATAAAATTTG 59.097 37.037 0.00 0.00 0.00 2.32
3517 4904 7.065443 GGTCGTTAGCACAGTCCTATAAAATTT 59.935 37.037 0.00 0.00 0.00 1.82
3518 4905 6.537660 GGTCGTTAGCACAGTCCTATAAAATT 59.462 38.462 0.00 0.00 0.00 1.82
3519 4906 6.047231 GGTCGTTAGCACAGTCCTATAAAAT 58.953 40.000 0.00 0.00 0.00 1.82
3520 4907 5.047164 TGGTCGTTAGCACAGTCCTATAAAA 60.047 40.000 0.00 0.00 0.00 1.52
3521 4908 4.463539 TGGTCGTTAGCACAGTCCTATAAA 59.536 41.667 0.00 0.00 0.00 1.40
3522 4909 4.018490 TGGTCGTTAGCACAGTCCTATAA 58.982 43.478 0.00 0.00 0.00 0.98
3523 4910 3.623703 TGGTCGTTAGCACAGTCCTATA 58.376 45.455 0.00 0.00 0.00 1.31
3524 4911 2.427453 CTGGTCGTTAGCACAGTCCTAT 59.573 50.000 0.00 0.00 0.00 2.57
3525 4912 1.816835 CTGGTCGTTAGCACAGTCCTA 59.183 52.381 0.00 0.00 0.00 2.94
3526 4913 0.603569 CTGGTCGTTAGCACAGTCCT 59.396 55.000 0.00 0.00 0.00 3.85
3527 4914 0.317479 ACTGGTCGTTAGCACAGTCC 59.683 55.000 0.00 0.00 39.84 3.85
3528 4915 3.888093 ACTGGTCGTTAGCACAGTC 57.112 52.632 0.00 0.00 39.84 3.51
3529 4916 0.039437 CGACTGGTCGTTAGCACAGT 60.039 55.000 14.05 0.00 46.99 3.55
3530 4917 2.725644 CGACTGGTCGTTAGCACAG 58.274 57.895 14.05 0.00 46.99 3.66
3531 4918 4.957266 CGACTGGTCGTTAGCACA 57.043 55.556 14.05 0.00 46.99 4.57
3561 4948 2.142418 GAAACTGGTCGTGCGTGTCG 62.142 60.000 0.00 0.00 0.00 4.35
3562 4949 1.563173 GAAACTGGTCGTGCGTGTC 59.437 57.895 0.00 0.00 0.00 3.67
3563 4950 1.885850 GGAAACTGGTCGTGCGTGT 60.886 57.895 0.00 0.00 0.00 4.49
3564 4951 2.604174 GGGAAACTGGTCGTGCGTG 61.604 63.158 0.00 0.00 0.00 5.34
3565 4952 2.280592 GGGAAACTGGTCGTGCGT 60.281 61.111 0.00 0.00 0.00 5.24
3566 4953 2.280524 TGGGAAACTGGTCGTGCG 60.281 61.111 0.00 0.00 0.00 5.34
3567 4954 2.604174 CGTGGGAAACTGGTCGTGC 61.604 63.158 0.00 0.00 0.00 5.34
3568 4955 2.604174 GCGTGGGAAACTGGTCGTG 61.604 63.158 0.00 0.00 0.00 4.35
3569 4956 2.280592 GCGTGGGAAACTGGTCGT 60.281 61.111 0.00 0.00 0.00 4.34
3570 4957 2.027625 GAGCGTGGGAAACTGGTCG 61.028 63.158 0.00 0.00 0.00 4.79
3571 4958 2.027625 CGAGCGTGGGAAACTGGTC 61.028 63.158 0.00 0.00 0.00 4.02
3572 4959 2.030562 CGAGCGTGGGAAACTGGT 59.969 61.111 0.00 0.00 0.00 4.00
3573 4960 3.423154 GCGAGCGTGGGAAACTGG 61.423 66.667 0.00 0.00 0.00 4.00
3574 4961 1.507141 AAAGCGAGCGTGGGAAACTG 61.507 55.000 0.00 0.00 0.00 3.16
3575 4962 1.227853 AAAGCGAGCGTGGGAAACT 60.228 52.632 0.00 0.00 0.00 2.66
3576 4963 1.206831 GAAAGCGAGCGTGGGAAAC 59.793 57.895 0.00 0.00 0.00 2.78
3577 4964 1.227704 TGAAAGCGAGCGTGGGAAA 60.228 52.632 0.00 0.00 0.00 3.13
3578 4965 1.959226 GTGAAAGCGAGCGTGGGAA 60.959 57.895 0.00 0.00 0.00 3.97
3579 4966 2.357034 GTGAAAGCGAGCGTGGGA 60.357 61.111 0.00 0.00 0.00 4.37
3580 4967 2.357517 AGTGAAAGCGAGCGTGGG 60.358 61.111 0.00 0.00 0.00 4.61
3581 4968 1.016130 ATCAGTGAAAGCGAGCGTGG 61.016 55.000 0.00 0.00 0.00 4.94
3582 4969 0.792640 AATCAGTGAAAGCGAGCGTG 59.207 50.000 0.00 0.00 0.00 5.34
3583 4970 1.512926 AAATCAGTGAAAGCGAGCGT 58.487 45.000 0.00 0.00 0.00 5.07
3607 4994 9.783081 AATTTACTACGGTTTTTAAGAGAAGGA 57.217 29.630 0.00 0.00 0.00 3.36
3648 5035 4.382254 CCACTAGCAATTTACTACGGTGGA 60.382 45.833 13.51 0.00 37.80 4.02
3649 5036 3.869246 CCACTAGCAATTTACTACGGTGG 59.131 47.826 8.29 8.29 32.72 4.61
3778 5172 5.163457 ACAATAGACAACAACAAAAGGTGGG 60.163 40.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.