Multiple sequence alignment - TraesCS7A01G162500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G162500 chr7A 100.000 3782 0 0 1 3782 118465330 118461549 0.000000e+00 6985.0
1 TraesCS7A01G162500 chr7B 91.980 2556 143 25 1271 3782 73136456 73133919 0.000000e+00 3528.0
2 TraesCS7A01G162500 chr7B 89.233 808 51 9 461 1266 73137267 73136494 0.000000e+00 977.0
3 TraesCS7A01G162500 chr7D 91.899 2148 117 29 1271 3390 113447866 113445748 0.000000e+00 2950.0
4 TraesCS7A01G162500 chr7D 88.671 971 59 18 297 1266 113448824 113447904 0.000000e+00 1136.0
5 TraesCS7A01G162500 chr7D 87.186 398 19 13 3395 3782 113445701 113445326 1.260000e-114 424.0
6 TraesCS7A01G162500 chr1B 90.263 1253 102 10 1271 2518 192275884 192274647 0.000000e+00 1620.0
7 TraesCS7A01G162500 chr1B 85.669 956 82 20 320 1266 192276831 192275922 0.000000e+00 955.0
8 TraesCS7A01G162500 chr1B 85.055 455 46 10 2512 2950 192274586 192274138 9.640000e-121 444.0
9 TraesCS7A01G162500 chr1B 85.227 88 11 1 1 86 576025354 576025441 5.200000e-14 89.8
10 TraesCS7A01G162500 chr1A 89.719 1245 102 10 1268 2506 146945053 146946277 0.000000e+00 1567.0
11 TraesCS7A01G162500 chr1A 85.315 967 88 20 309 1266 146944097 146945018 0.000000e+00 950.0
12 TraesCS7A01G162500 chr1A 84.683 457 44 17 2512 2950 146946350 146946798 2.090000e-117 433.0
13 TraesCS7A01G162500 chr1A 85.393 89 11 1 1 87 521339562 521339650 1.450000e-14 91.6
14 TraesCS7A01G162500 chr1A 84.444 90 11 2 1 88 521339476 521339564 6.730000e-13 86.1
15 TraesCS7A01G162500 chr1D 89.353 1221 110 8 1303 2518 143258445 143257240 0.000000e+00 1517.0
16 TraesCS7A01G162500 chr1D 85.803 965 83 18 312 1267 143264020 143263101 0.000000e+00 974.0
17 TraesCS7A01G162500 chr1D 90.753 292 26 1 2512 2803 143257179 143256889 4.580000e-104 388.0
18 TraesCS7A01G162500 chr1D 85.393 89 11 1 1 87 426419040 426419128 1.450000e-14 91.6
19 TraesCS7A01G162500 chr1D 97.297 37 1 0 1271 1307 143263064 143263028 3.150000e-06 63.9
20 TraesCS7A01G162500 chr6A 87.177 889 87 12 380 1266 588864309 588863446 0.000000e+00 985.0
21 TraesCS7A01G162500 chr6B 88.337 523 53 4 312 834 665734046 665733532 4.150000e-174 621.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G162500 chr7A 118461549 118465330 3781 True 6985.000000 6985 100.000000 1 3782 1 chr7A.!!$R1 3781
1 TraesCS7A01G162500 chr7B 73133919 73137267 3348 True 2252.500000 3528 90.606500 461 3782 2 chr7B.!!$R1 3321
2 TraesCS7A01G162500 chr7D 113445326 113448824 3498 True 1503.333333 2950 89.252000 297 3782 3 chr7D.!!$R1 3485
3 TraesCS7A01G162500 chr1B 192274138 192276831 2693 True 1006.333333 1620 86.995667 320 2950 3 chr1B.!!$R1 2630
4 TraesCS7A01G162500 chr1A 146944097 146946798 2701 False 983.333333 1567 86.572333 309 2950 3 chr1A.!!$F1 2641
5 TraesCS7A01G162500 chr1D 143256889 143258445 1556 True 952.500000 1517 90.053000 1303 2803 2 chr1D.!!$R1 1500
6 TraesCS7A01G162500 chr1D 143263028 143264020 992 True 518.950000 974 91.550000 312 1307 2 chr1D.!!$R2 995
7 TraesCS7A01G162500 chr6A 588863446 588864309 863 True 985.000000 985 87.177000 380 1266 1 chr6A.!!$R1 886
8 TraesCS7A01G162500 chr6B 665733532 665734046 514 True 621.000000 621 88.337000 312 834 1 chr6B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.035317 TGAGCCTGGCTGTACACAAG 59.965 55.0 28.82 0.00 39.88 3.16 F
618 624 0.035630 ATCTGAAGAGTGCAGCACCC 60.036 55.0 22.41 10.94 34.49 4.61 F
968 986 0.039798 CTGCACCAACAGCACATCAC 60.040 55.0 0.00 0.00 37.02 3.06 F
1523 1579 0.177373 GTACTTTGGTAGCCCCTCCG 59.823 60.0 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1087 1106 0.886490 CTATGGTCAGCCCCATTCGC 60.886 60.0 5.57 0.0 42.7 4.70 R
2538 2679 0.719465 CGGCCGATTTCTACACACAC 59.281 55.0 24.07 0.0 0.0 3.82 R
2639 2780 0.334335 TATCCCATGGCAAGGCACAA 59.666 50.0 6.09 0.0 0.0 3.33 R
3473 3692 0.179174 GTTGCCGTTATTCTTGCCCG 60.179 55.0 0.00 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.154827 CAAGCTCCCTTTTCCTAACCA 57.845 47.619 0.00 0.00 0.00 3.67
21 22 3.496331 CAAGCTCCCTTTTCCTAACCAA 58.504 45.455 0.00 0.00 0.00 3.67
22 23 3.441500 AGCTCCCTTTTCCTAACCAAG 57.558 47.619 0.00 0.00 0.00 3.61
23 24 2.986728 AGCTCCCTTTTCCTAACCAAGA 59.013 45.455 0.00 0.00 0.00 3.02
24 25 3.397955 AGCTCCCTTTTCCTAACCAAGAA 59.602 43.478 0.00 0.00 0.00 2.52
25 26 4.141018 AGCTCCCTTTTCCTAACCAAGAAA 60.141 41.667 0.00 0.00 0.00 2.52
26 27 4.587262 GCTCCCTTTTCCTAACCAAGAAAA 59.413 41.667 0.00 0.00 39.12 2.29
27 28 5.246203 GCTCCCTTTTCCTAACCAAGAAAAT 59.754 40.000 0.00 0.00 40.25 1.82
28 29 6.664428 TCCCTTTTCCTAACCAAGAAAATG 57.336 37.500 0.00 0.00 40.25 2.32
29 30 5.011635 TCCCTTTTCCTAACCAAGAAAATGC 59.988 40.000 0.00 0.00 40.25 3.56
30 31 5.237815 CCTTTTCCTAACCAAGAAAATGCC 58.762 41.667 0.00 0.00 40.25 4.40
31 32 5.012046 CCTTTTCCTAACCAAGAAAATGCCT 59.988 40.000 0.00 0.00 40.25 4.75
32 33 5.722021 TTTCCTAACCAAGAAAATGCCTC 57.278 39.130 0.00 0.00 0.00 4.70
33 34 4.657814 TCCTAACCAAGAAAATGCCTCT 57.342 40.909 0.00 0.00 0.00 3.69
34 35 4.998051 TCCTAACCAAGAAAATGCCTCTT 58.002 39.130 0.00 0.00 33.31 2.85
35 36 6.134535 TCCTAACCAAGAAAATGCCTCTTA 57.865 37.500 0.00 0.00 31.84 2.10
36 37 6.548321 TCCTAACCAAGAAAATGCCTCTTAA 58.452 36.000 0.00 0.00 31.84 1.85
37 38 7.007723 TCCTAACCAAGAAAATGCCTCTTAAA 58.992 34.615 0.00 0.00 31.84 1.52
38 39 7.507616 TCCTAACCAAGAAAATGCCTCTTAAAA 59.492 33.333 0.00 0.00 31.84 1.52
39 40 7.598869 CCTAACCAAGAAAATGCCTCTTAAAAC 59.401 37.037 0.00 0.00 31.84 2.43
40 41 6.478512 ACCAAGAAAATGCCTCTTAAAACA 57.521 33.333 0.00 0.00 31.84 2.83
41 42 6.883744 ACCAAGAAAATGCCTCTTAAAACAA 58.116 32.000 0.00 0.00 31.84 2.83
42 43 7.508687 ACCAAGAAAATGCCTCTTAAAACAAT 58.491 30.769 0.00 0.00 31.84 2.71
43 44 7.442062 ACCAAGAAAATGCCTCTTAAAACAATG 59.558 33.333 0.00 0.00 31.84 2.82
44 45 7.293018 CAAGAAAATGCCTCTTAAAACAATGC 58.707 34.615 0.00 0.00 31.84 3.56
45 46 5.934043 AGAAAATGCCTCTTAAAACAATGCC 59.066 36.000 0.00 0.00 0.00 4.40
46 47 4.888326 AATGCCTCTTAAAACAATGCCA 57.112 36.364 0.00 0.00 0.00 4.92
47 48 3.940209 TGCCTCTTAAAACAATGCCAG 57.060 42.857 0.00 0.00 0.00 4.85
48 49 3.230134 TGCCTCTTAAAACAATGCCAGT 58.770 40.909 0.00 0.00 0.00 4.00
49 50 3.005684 TGCCTCTTAAAACAATGCCAGTG 59.994 43.478 0.00 0.00 0.00 3.66
50 51 3.255642 GCCTCTTAAAACAATGCCAGTGA 59.744 43.478 0.00 0.00 0.00 3.41
51 52 4.082026 GCCTCTTAAAACAATGCCAGTGAT 60.082 41.667 0.00 0.00 0.00 3.06
52 53 5.644644 CCTCTTAAAACAATGCCAGTGATC 58.355 41.667 0.00 0.00 0.00 2.92
53 54 5.416952 CCTCTTAAAACAATGCCAGTGATCT 59.583 40.000 0.00 0.00 0.00 2.75
54 55 6.599244 CCTCTTAAAACAATGCCAGTGATCTA 59.401 38.462 0.00 0.00 0.00 1.98
55 56 7.284034 CCTCTTAAAACAATGCCAGTGATCTAT 59.716 37.037 0.00 0.00 0.00 1.98
56 57 9.330063 CTCTTAAAACAATGCCAGTGATCTATA 57.670 33.333 0.00 0.00 0.00 1.31
57 58 9.330063 TCTTAAAACAATGCCAGTGATCTATAG 57.670 33.333 0.00 0.00 0.00 1.31
58 59 9.330063 CTTAAAACAATGCCAGTGATCTATAGA 57.670 33.333 4.57 4.57 0.00 1.98
59 60 7.559590 AAAACAATGCCAGTGATCTATAGAC 57.440 36.000 4.10 0.16 0.00 2.59
60 61 6.491714 AACAATGCCAGTGATCTATAGACT 57.508 37.500 4.10 0.00 0.00 3.24
61 62 7.603180 AACAATGCCAGTGATCTATAGACTA 57.397 36.000 4.10 0.00 0.00 2.59
62 63 7.789202 ACAATGCCAGTGATCTATAGACTAT 57.211 36.000 4.10 0.00 0.00 2.12
63 64 7.609960 ACAATGCCAGTGATCTATAGACTATG 58.390 38.462 4.10 2.20 0.00 2.23
64 65 7.452813 ACAATGCCAGTGATCTATAGACTATGA 59.547 37.037 4.10 1.81 0.00 2.15
65 66 7.643569 ATGCCAGTGATCTATAGACTATGAG 57.356 40.000 4.10 0.03 0.00 2.90
66 67 6.784031 TGCCAGTGATCTATAGACTATGAGA 58.216 40.000 4.10 5.02 0.00 3.27
67 68 6.883756 TGCCAGTGATCTATAGACTATGAGAG 59.116 42.308 4.10 0.00 0.00 3.20
68 69 7.109501 GCCAGTGATCTATAGACTATGAGAGA 58.890 42.308 4.10 0.91 0.00 3.10
69 70 7.280876 GCCAGTGATCTATAGACTATGAGAGAG 59.719 44.444 4.10 0.00 0.00 3.20
70 71 8.321353 CCAGTGATCTATAGACTATGAGAGAGT 58.679 40.741 4.10 0.00 0.00 3.24
81 82 8.313944 AGACTATGAGAGAGTACTAACAGAGA 57.686 38.462 14.80 0.00 31.02 3.10
82 83 8.202137 AGACTATGAGAGAGTACTAACAGAGAC 58.798 40.741 14.80 10.75 31.02 3.36
83 84 8.086143 ACTATGAGAGAGTACTAACAGAGACT 57.914 38.462 14.80 0.00 31.02 3.24
84 85 9.204337 ACTATGAGAGAGTACTAACAGAGACTA 57.796 37.037 14.80 0.00 31.02 2.59
85 86 9.472361 CTATGAGAGAGTACTAACAGAGACTAC 57.528 40.741 0.00 0.00 0.00 2.73
86 87 7.242322 TGAGAGAGTACTAACAGAGACTACA 57.758 40.000 0.00 0.00 0.00 2.74
87 88 7.677892 TGAGAGAGTACTAACAGAGACTACAA 58.322 38.462 0.00 0.00 0.00 2.41
88 89 8.155510 TGAGAGAGTACTAACAGAGACTACAAA 58.844 37.037 0.00 0.00 0.00 2.83
89 90 8.556213 AGAGAGTACTAACAGAGACTACAAAG 57.444 38.462 0.00 0.00 0.00 2.77
90 91 8.158789 AGAGAGTACTAACAGAGACTACAAAGT 58.841 37.037 0.00 0.00 39.21 2.66
91 92 8.694581 AGAGTACTAACAGAGACTACAAAGTT 57.305 34.615 0.00 0.00 35.56 2.66
92 93 8.569641 AGAGTACTAACAGAGACTACAAAGTTG 58.430 37.037 0.00 0.00 35.56 3.16
93 94 7.146648 AGTACTAACAGAGACTACAAAGTTGC 58.853 38.462 0.00 0.00 35.56 4.17
94 95 5.914033 ACTAACAGAGACTACAAAGTTGCA 58.086 37.500 0.00 0.00 35.56 4.08
95 96 6.525629 ACTAACAGAGACTACAAAGTTGCAT 58.474 36.000 0.00 0.00 35.56 3.96
96 97 5.931441 AACAGAGACTACAAAGTTGCATC 57.069 39.130 0.00 0.00 35.56 3.91
97 98 4.960938 ACAGAGACTACAAAGTTGCATCA 58.039 39.130 0.00 0.00 35.56 3.07
98 99 4.993584 ACAGAGACTACAAAGTTGCATCAG 59.006 41.667 0.00 0.00 35.56 2.90
99 100 4.391216 CAGAGACTACAAAGTTGCATCAGG 59.609 45.833 0.00 0.00 35.56 3.86
100 101 3.077359 AGACTACAAAGTTGCATCAGGC 58.923 45.455 0.00 0.00 38.60 4.85
114 115 5.162000 GCATCAGGCAGTAAATTAGTCAC 57.838 43.478 0.00 0.00 43.97 3.67
115 116 4.035675 GCATCAGGCAGTAAATTAGTCACC 59.964 45.833 0.00 0.00 43.97 4.02
116 117 5.431765 CATCAGGCAGTAAATTAGTCACCT 58.568 41.667 0.00 0.00 0.00 4.00
117 118 5.499004 TCAGGCAGTAAATTAGTCACCTT 57.501 39.130 0.00 0.00 0.00 3.50
118 119 5.245531 TCAGGCAGTAAATTAGTCACCTTG 58.754 41.667 0.00 0.00 0.00 3.61
119 120 5.003804 CAGGCAGTAAATTAGTCACCTTGT 58.996 41.667 0.00 0.00 0.00 3.16
120 121 5.122396 CAGGCAGTAAATTAGTCACCTTGTC 59.878 44.000 0.00 0.00 0.00 3.18
121 122 5.001232 GGCAGTAAATTAGTCACCTTGTCA 58.999 41.667 0.00 0.00 0.00 3.58
122 123 5.122396 GGCAGTAAATTAGTCACCTTGTCAG 59.878 44.000 0.00 0.00 0.00 3.51
124 125 5.643777 CAGTAAATTAGTCACCTTGTCAGGG 59.356 44.000 0.00 0.00 46.01 4.45
125 126 4.724279 AAATTAGTCACCTTGTCAGGGT 57.276 40.909 0.00 0.00 46.01 4.34
130 131 3.161557 ACCTTGTCAGGGTGAGCC 58.838 61.111 5.71 0.00 46.01 4.70
131 132 1.462238 ACCTTGTCAGGGTGAGCCT 60.462 57.895 5.71 0.00 46.01 4.58
132 133 1.002868 CCTTGTCAGGGTGAGCCTG 60.003 63.158 24.04 24.04 36.36 4.85
133 134 1.002868 CTTGTCAGGGTGAGCCTGG 60.003 63.158 28.39 10.32 36.11 4.45
134 135 3.196207 TTGTCAGGGTGAGCCTGGC 62.196 63.158 27.03 27.03 39.98 4.85
135 136 3.325753 GTCAGGGTGAGCCTGGCT 61.326 66.667 26.55 23.64 43.88 4.75
136 137 3.324930 TCAGGGTGAGCCTGGCTG 61.325 66.667 28.82 11.72 39.88 4.85
137 138 3.644606 CAGGGTGAGCCTGGCTGT 61.645 66.667 28.82 2.00 39.88 4.40
138 139 2.122729 AGGGTGAGCCTGGCTGTA 59.877 61.111 28.82 12.29 39.88 2.74
139 140 2.269241 GGGTGAGCCTGGCTGTAC 59.731 66.667 28.82 22.95 39.88 2.90
140 141 2.592993 GGGTGAGCCTGGCTGTACA 61.593 63.158 28.82 15.53 39.88 2.90
141 142 1.376037 GGTGAGCCTGGCTGTACAC 60.376 63.158 28.82 25.61 39.88 2.90
142 143 1.371183 GTGAGCCTGGCTGTACACA 59.629 57.895 28.82 14.70 39.88 3.72
143 144 0.250295 GTGAGCCTGGCTGTACACAA 60.250 55.000 28.82 0.00 39.88 3.33
144 145 0.035317 TGAGCCTGGCTGTACACAAG 59.965 55.000 28.82 0.00 39.88 3.16
145 146 0.674895 GAGCCTGGCTGTACACAAGG 60.675 60.000 28.82 12.22 39.88 3.61
146 147 1.675641 GCCTGGCTGTACACAAGGG 60.676 63.158 12.43 7.92 0.00 3.95
147 148 1.675641 CCTGGCTGTACACAAGGGC 60.676 63.158 9.77 5.48 0.00 5.19
148 149 1.376466 CTGGCTGTACACAAGGGCT 59.624 57.895 7.71 0.00 0.00 5.19
149 150 0.613260 CTGGCTGTACACAAGGGCTA 59.387 55.000 7.71 0.00 0.00 3.93
150 151 0.613260 TGGCTGTACACAAGGGCTAG 59.387 55.000 7.71 0.00 0.00 3.42
151 152 0.107654 GGCTGTACACAAGGGCTAGG 60.108 60.000 0.00 0.00 0.00 3.02
152 153 0.107654 GCTGTACACAAGGGCTAGGG 60.108 60.000 0.00 0.00 0.00 3.53
153 154 1.276622 CTGTACACAAGGGCTAGGGT 58.723 55.000 0.00 0.00 0.00 4.34
154 155 0.981183 TGTACACAAGGGCTAGGGTG 59.019 55.000 0.00 0.00 37.29 4.61
155 156 0.392595 GTACACAAGGGCTAGGGTGC 60.393 60.000 0.00 0.00 34.69 5.01
156 157 0.546747 TACACAAGGGCTAGGGTGCT 60.547 55.000 0.00 0.00 34.69 4.40
157 158 1.380302 CACAAGGGCTAGGGTGCTT 59.620 57.895 0.00 0.00 0.00 3.91
158 159 0.678048 CACAAGGGCTAGGGTGCTTC 60.678 60.000 0.00 0.00 0.00 3.86
159 160 1.077429 CAAGGGCTAGGGTGCTTCC 60.077 63.158 0.00 0.00 0.00 3.46
168 169 4.018409 GGTGCTTCCCCATGAACC 57.982 61.111 0.00 0.00 0.00 3.62
169 170 2.046285 GGTGCTTCCCCATGAACCG 61.046 63.158 0.00 0.00 0.00 4.44
170 171 2.361104 TGCTTCCCCATGAACCGC 60.361 61.111 0.00 0.00 0.00 5.68
171 172 3.140814 GCTTCCCCATGAACCGCC 61.141 66.667 0.00 0.00 0.00 6.13
172 173 2.354729 CTTCCCCATGAACCGCCA 59.645 61.111 0.00 0.00 0.00 5.69
173 174 1.304052 CTTCCCCATGAACCGCCAA 60.304 57.895 0.00 0.00 0.00 4.52
174 175 0.897863 CTTCCCCATGAACCGCCAAA 60.898 55.000 0.00 0.00 0.00 3.28
175 176 1.182385 TTCCCCATGAACCGCCAAAC 61.182 55.000 0.00 0.00 0.00 2.93
176 177 1.905843 CCCCATGAACCGCCAAACA 60.906 57.895 0.00 0.00 0.00 2.83
177 178 1.288752 CCCATGAACCGCCAAACAC 59.711 57.895 0.00 0.00 0.00 3.32
178 179 1.288752 CCATGAACCGCCAAACACC 59.711 57.895 0.00 0.00 0.00 4.16
179 180 1.178534 CCATGAACCGCCAAACACCT 61.179 55.000 0.00 0.00 0.00 4.00
180 181 1.529226 CATGAACCGCCAAACACCTA 58.471 50.000 0.00 0.00 0.00 3.08
181 182 1.199097 CATGAACCGCCAAACACCTAC 59.801 52.381 0.00 0.00 0.00 3.18
182 183 0.180642 TGAACCGCCAAACACCTACA 59.819 50.000 0.00 0.00 0.00 2.74
183 184 1.202830 TGAACCGCCAAACACCTACAT 60.203 47.619 0.00 0.00 0.00 2.29
184 185 1.467342 GAACCGCCAAACACCTACATC 59.533 52.381 0.00 0.00 0.00 3.06
185 186 0.398696 ACCGCCAAACACCTACATCA 59.601 50.000 0.00 0.00 0.00 3.07
186 187 1.004277 ACCGCCAAACACCTACATCAT 59.996 47.619 0.00 0.00 0.00 2.45
187 188 1.670811 CCGCCAAACACCTACATCATC 59.329 52.381 0.00 0.00 0.00 2.92
188 189 1.670811 CGCCAAACACCTACATCATCC 59.329 52.381 0.00 0.00 0.00 3.51
189 190 2.680805 CGCCAAACACCTACATCATCCT 60.681 50.000 0.00 0.00 0.00 3.24
190 191 2.945668 GCCAAACACCTACATCATCCTC 59.054 50.000 0.00 0.00 0.00 3.71
191 192 3.622206 GCCAAACACCTACATCATCCTCA 60.622 47.826 0.00 0.00 0.00 3.86
192 193 4.785301 CCAAACACCTACATCATCCTCAT 58.215 43.478 0.00 0.00 0.00 2.90
193 194 5.687441 GCCAAACACCTACATCATCCTCATA 60.687 44.000 0.00 0.00 0.00 2.15
194 195 6.356556 CCAAACACCTACATCATCCTCATAA 58.643 40.000 0.00 0.00 0.00 1.90
195 196 6.260936 CCAAACACCTACATCATCCTCATAAC 59.739 42.308 0.00 0.00 0.00 1.89
196 197 5.552870 ACACCTACATCATCCTCATAACC 57.447 43.478 0.00 0.00 0.00 2.85
197 198 4.968719 ACACCTACATCATCCTCATAACCA 59.031 41.667 0.00 0.00 0.00 3.67
198 199 5.070981 ACACCTACATCATCCTCATAACCAG 59.929 44.000 0.00 0.00 0.00 4.00
199 200 5.070981 CACCTACATCATCCTCATAACCAGT 59.929 44.000 0.00 0.00 0.00 4.00
200 201 5.070981 ACCTACATCATCCTCATAACCAGTG 59.929 44.000 0.00 0.00 0.00 3.66
201 202 5.070981 CCTACATCATCCTCATAACCAGTGT 59.929 44.000 0.00 0.00 0.00 3.55
202 203 6.267699 CCTACATCATCCTCATAACCAGTGTA 59.732 42.308 0.00 0.00 0.00 2.90
203 204 6.753913 ACATCATCCTCATAACCAGTGTAT 57.246 37.500 0.00 0.00 0.00 2.29
204 205 7.141758 ACATCATCCTCATAACCAGTGTATT 57.858 36.000 0.00 0.00 0.00 1.89
205 206 7.577303 ACATCATCCTCATAACCAGTGTATTT 58.423 34.615 0.00 0.00 0.00 1.40
206 207 8.713971 ACATCATCCTCATAACCAGTGTATTTA 58.286 33.333 0.00 0.00 0.00 1.40
207 208 9.730705 CATCATCCTCATAACCAGTGTATTTAT 57.269 33.333 0.00 0.00 0.00 1.40
237 238 9.683069 CTGAAAGTCATAGTAAAGCAAACAATT 57.317 29.630 0.00 0.00 0.00 2.32
242 243 9.683069 AGTCATAGTAAAGCAAACAATTTTCTG 57.317 29.630 0.00 0.00 0.00 3.02
243 244 9.677567 GTCATAGTAAAGCAAACAATTTTCTGA 57.322 29.630 0.00 0.00 0.00 3.27
244 245 9.897744 TCATAGTAAAGCAAACAATTTTCTGAG 57.102 29.630 0.00 0.00 0.00 3.35
245 246 9.132521 CATAGTAAAGCAAACAATTTTCTGAGG 57.867 33.333 0.00 0.00 0.00 3.86
246 247 7.346751 AGTAAAGCAAACAATTTTCTGAGGA 57.653 32.000 0.00 0.00 0.00 3.71
247 248 7.781056 AGTAAAGCAAACAATTTTCTGAGGAA 58.219 30.769 0.00 0.00 0.00 3.36
248 249 8.257306 AGTAAAGCAAACAATTTTCTGAGGAAA 58.743 29.630 0.00 0.00 39.38 3.13
249 250 9.045223 GTAAAGCAAACAATTTTCTGAGGAAAT 57.955 29.630 0.00 0.00 40.57 2.17
250 251 8.510243 AAAGCAAACAATTTTCTGAGGAAATT 57.490 26.923 5.62 5.62 40.57 1.82
251 252 9.612066 AAAGCAAACAATTTTCTGAGGAAATTA 57.388 25.926 10.93 0.00 40.57 1.40
252 253 9.783081 AAGCAAACAATTTTCTGAGGAAATTAT 57.217 25.926 10.93 0.00 40.57 1.28
258 259 9.860898 ACAATTTTCTGAGGAAATTATAGTTGC 57.139 29.630 10.93 0.00 40.57 4.17
261 262 7.865706 TTTCTGAGGAAATTATAGTTGCTCC 57.134 36.000 13.62 4.61 41.34 4.70
262 263 6.560003 TCTGAGGAAATTATAGTTGCTCCA 57.440 37.500 13.62 5.31 41.34 3.86
263 264 7.141758 TCTGAGGAAATTATAGTTGCTCCAT 57.858 36.000 13.62 0.00 41.34 3.41
264 265 7.577303 TCTGAGGAAATTATAGTTGCTCCATT 58.423 34.615 13.62 0.00 41.34 3.16
265 266 8.055181 TCTGAGGAAATTATAGTTGCTCCATTT 58.945 33.333 13.62 0.00 41.34 2.32
266 267 8.225603 TGAGGAAATTATAGTTGCTCCATTTC 57.774 34.615 13.62 5.83 41.34 2.17
267 268 7.012327 TGAGGAAATTATAGTTGCTCCATTTCG 59.988 37.037 13.62 0.00 41.34 3.46
268 269 7.054124 AGGAAATTATAGTTGCTCCATTTCGA 58.946 34.615 2.58 0.00 33.33 3.71
269 270 7.227512 AGGAAATTATAGTTGCTCCATTTCGAG 59.772 37.037 2.58 0.00 33.33 4.04
270 271 7.226720 GGAAATTATAGTTGCTCCATTTCGAGA 59.773 37.037 0.00 0.00 33.33 4.04
271 272 8.506168 AAATTATAGTTGCTCCATTTCGAGAA 57.494 30.769 0.00 0.00 30.97 2.87
272 273 8.682936 AATTATAGTTGCTCCATTTCGAGAAT 57.317 30.769 0.00 0.00 30.97 2.40
273 274 9.778741 AATTATAGTTGCTCCATTTCGAGAATA 57.221 29.630 0.00 0.00 30.97 1.75
274 275 9.950496 ATTATAGTTGCTCCATTTCGAGAATAT 57.050 29.630 0.00 0.00 30.97 1.28
277 278 7.484035 AGTTGCTCCATTTCGAGAATATAAC 57.516 36.000 0.00 0.00 30.97 1.89
278 279 6.483640 AGTTGCTCCATTTCGAGAATATAACC 59.516 38.462 0.00 0.00 30.97 2.85
279 280 5.924356 TGCTCCATTTCGAGAATATAACCA 58.076 37.500 0.00 0.00 30.97 3.67
280 281 5.991606 TGCTCCATTTCGAGAATATAACCAG 59.008 40.000 0.00 0.00 30.97 4.00
281 282 6.183360 TGCTCCATTTCGAGAATATAACCAGA 60.183 38.462 0.00 0.00 30.97 3.86
282 283 6.146347 GCTCCATTTCGAGAATATAACCAGAC 59.854 42.308 0.00 0.00 30.97 3.51
283 284 7.119709 TCCATTTCGAGAATATAACCAGACA 57.880 36.000 0.00 0.00 0.00 3.41
284 285 7.735917 TCCATTTCGAGAATATAACCAGACAT 58.264 34.615 0.00 0.00 0.00 3.06
285 286 7.657354 TCCATTTCGAGAATATAACCAGACATG 59.343 37.037 0.00 0.00 0.00 3.21
310 311 2.380084 TGAGACTTCATACCGGCAAC 57.620 50.000 0.00 0.00 0.00 4.17
317 318 4.442706 ACTTCATACCGGCAACAAGATAG 58.557 43.478 0.00 0.00 0.00 2.08
403 405 1.657822 GCCTTTCCTTTCTCGGCTAG 58.342 55.000 0.00 0.00 37.76 3.42
451 453 7.437713 TCATGAATGTCAAGATACCTACCTT 57.562 36.000 0.00 0.00 0.00 3.50
560 566 5.818678 CCAGCCAGTGGGTTATACTTATA 57.181 43.478 12.23 0.00 43.63 0.98
561 567 5.548406 CCAGCCAGTGGGTTATACTTATAC 58.452 45.833 12.23 0.00 43.63 1.47
562 568 5.071250 CCAGCCAGTGGGTTATACTTATACA 59.929 44.000 12.23 0.00 43.63 2.29
563 569 6.223852 CAGCCAGTGGGTTATACTTATACAG 58.776 44.000 12.23 0.00 36.17 2.74
564 570 4.995487 GCCAGTGGGTTATACTTATACAGC 59.005 45.833 12.15 0.00 36.17 4.40
565 571 5.221661 GCCAGTGGGTTATACTTATACAGCT 60.222 44.000 12.15 0.00 36.17 4.24
584 590 1.281656 GCAAGGGTTCAAACGTCCG 59.718 57.895 0.00 0.00 0.00 4.79
588 594 2.247267 GGTTCAAACGTCCGTGCG 59.753 61.111 0.00 0.00 37.94 5.34
599 605 3.449227 CCGTGCGAGGCTAGTGGA 61.449 66.667 0.00 0.00 0.00 4.02
618 624 0.035630 ATCTGAAGAGTGCAGCACCC 60.036 55.000 22.41 10.94 34.49 4.61
726 732 7.824779 AGGATCTTAGTGTTGAAATAACCTCAC 59.175 37.037 0.00 0.00 0.00 3.51
820 837 1.377536 GAGAATCTTCTGCTGCCACC 58.622 55.000 0.00 0.00 37.73 4.61
883 900 4.751767 ACCTGAGCTAAGAAGATCCAAG 57.248 45.455 0.00 0.00 37.34 3.61
924 942 3.617263 GCGCCTATAAATAATCCTCACGG 59.383 47.826 0.00 0.00 0.00 4.94
927 945 4.392138 GCCTATAAATAATCCTCACGGTGC 59.608 45.833 2.51 0.00 0.00 5.01
928 946 4.625742 CCTATAAATAATCCTCACGGTGCG 59.374 45.833 2.51 0.00 0.00 5.34
929 947 1.014352 AAATAATCCTCACGGTGCGC 58.986 50.000 0.00 0.00 0.00 6.09
966 984 0.953727 TTCTGCACCAACAGCACATC 59.046 50.000 0.00 0.00 37.02 3.06
967 985 0.179023 TCTGCACCAACAGCACATCA 60.179 50.000 0.00 0.00 37.02 3.07
968 986 0.039798 CTGCACCAACAGCACATCAC 60.040 55.000 0.00 0.00 37.02 3.06
969 987 0.750911 TGCACCAACAGCACATCACA 60.751 50.000 0.00 0.00 37.02 3.58
970 988 0.599558 GCACCAACAGCACATCACAT 59.400 50.000 0.00 0.00 0.00 3.21
987 1005 6.989169 ACATCACATACTAAGAAGGCATTCTC 59.011 38.462 14.91 0.00 45.25 2.87
1029 1048 0.979665 TTGTGCCCCTCTTCTCTCTG 59.020 55.000 0.00 0.00 0.00 3.35
1087 1106 1.000896 ATGAAAGTGGCCCCTTCGG 60.001 57.895 0.00 0.00 0.00 4.30
1191 1210 0.951558 GCCATGACGACACAAAGGTT 59.048 50.000 0.00 0.00 0.00 3.50
1269 1322 9.753674 TTCACTAGAAATGGAAGTGGATATTTT 57.246 29.630 0.00 0.00 0.00 1.82
1478 1531 9.094459 CATAAAATTTTGCAAACAAAGATGACG 57.906 29.630 12.39 0.00 46.08 4.35
1523 1579 0.177373 GTACTTTGGTAGCCCCTCCG 59.823 60.000 0.00 0.00 0.00 4.63
1641 1697 1.631405 TGGAAAGATTTGGTGGCAGG 58.369 50.000 0.00 0.00 0.00 4.85
1643 1699 2.225343 TGGAAAGATTTGGTGGCAGGAT 60.225 45.455 0.00 0.00 0.00 3.24
1825 1886 1.786937 TTTCTTTTCCTTGGCAGCCA 58.213 45.000 11.22 11.22 0.00 4.75
1869 1936 4.922206 AGTGCACCTTCCAATCATCTTAA 58.078 39.130 14.63 0.00 0.00 1.85
1882 1954 6.963242 CCAATCATCTTAATTCGCATATTCCG 59.037 38.462 0.00 0.00 0.00 4.30
1886 1958 7.323420 TCATCTTAATTCGCATATTCCGATCT 58.677 34.615 0.00 0.00 34.35 2.75
1891 1963 9.569167 CTTAATTCGCATATTCCGATCTAGTAA 57.431 33.333 0.00 0.00 34.35 2.24
2051 2124 3.266510 TGCAGTGATGTAAGGATGTCC 57.733 47.619 0.00 0.00 0.00 4.02
2053 2126 2.092968 GCAGTGATGTAAGGATGTCCCA 60.093 50.000 0.00 0.00 37.41 4.37
2055 2128 3.198635 CAGTGATGTAAGGATGTCCCACT 59.801 47.826 0.00 0.00 37.41 4.00
2252 2325 1.300233 CATCGGGAGCTTAGGCGAC 60.300 63.158 0.00 0.00 44.37 5.19
2399 2472 6.713450 TCCAGAACATGATGATGGATAATGTG 59.287 38.462 12.40 0.00 35.16 3.21
2408 2481 3.053768 TGATGGATAATGTGCAGAACCCA 60.054 43.478 0.00 0.00 0.00 4.51
2506 2579 6.709643 TGCGTTGGTTTTATTCATTTGTTTG 58.290 32.000 0.00 0.00 0.00 2.93
2583 2724 4.932146 AGGTGAGCAATGTGTTGTTTAAC 58.068 39.130 0.00 0.00 37.65 2.01
2639 2780 2.630098 TCAAGCTCAGTTGCAGTAGAGT 59.370 45.455 11.41 0.00 34.99 3.24
2685 2826 2.061773 CACAACGTCAGGCTTACTCTG 58.938 52.381 0.00 0.00 0.00 3.35
2745 2886 2.305343 TGCAAAATGGAGGAAATTGGGG 59.695 45.455 0.00 0.00 0.00 4.96
2838 2994 2.431954 ATGATGAGCAGGAAGGGTTG 57.568 50.000 0.00 0.00 0.00 3.77
2849 3006 3.007182 CAGGAAGGGTTGCATGTTTTGAT 59.993 43.478 0.00 0.00 0.00 2.57
2850 3007 4.220382 CAGGAAGGGTTGCATGTTTTGATA 59.780 41.667 0.00 0.00 0.00 2.15
2851 3008 4.463891 AGGAAGGGTTGCATGTTTTGATAG 59.536 41.667 0.00 0.00 0.00 2.08
3030 3188 0.813610 TCCGCTGTGTGGTCTGTTTG 60.814 55.000 0.00 0.00 34.40 2.93
3071 3229 2.345124 ACGGAGCGGAAGATAGTAGT 57.655 50.000 0.00 0.00 0.00 2.73
3121 3296 3.686016 TGTGGAGAGCATAAACCCTTTC 58.314 45.455 0.00 0.00 0.00 2.62
3147 3323 3.699411 TTTAGCAAATTTGGGCAGCAT 57.301 38.095 19.47 0.00 0.00 3.79
3156 3332 1.737838 TTGGGCAGCATTTCTACTCG 58.262 50.000 0.00 0.00 0.00 4.18
3169 3345 1.819288 TCTACTCGAGCTGAAACTGGG 59.181 52.381 13.61 0.00 0.00 4.45
3181 3357 6.131961 AGCTGAAACTGGGAAATTATATGCT 58.868 36.000 0.00 0.00 0.00 3.79
3219 3395 3.454812 AGCGGTACTATGAGAACCCAAAT 59.545 43.478 0.00 0.00 0.00 2.32
3220 3396 3.808174 GCGGTACTATGAGAACCCAAATC 59.192 47.826 0.00 0.00 0.00 2.17
3221 3397 4.443034 GCGGTACTATGAGAACCCAAATCT 60.443 45.833 0.00 0.00 0.00 2.40
3229 3405 8.822805 ACTATGAGAACCCAAATCTACAAGTTA 58.177 33.333 0.00 0.00 0.00 2.24
3234 3410 9.841880 GAGAACCCAAATCTACAAGTTAAAATC 57.158 33.333 0.00 0.00 0.00 2.17
3278 3454 5.009010 GTCATGACTTCACAATTGTTGGACT 59.991 40.000 18.83 0.00 34.12 3.85
3306 3482 2.360801 GCAGTCAAGTGGCCAAAAAGTA 59.639 45.455 7.24 0.00 0.00 2.24
3309 3485 5.600696 CAGTCAAGTGGCCAAAAAGTAAAT 58.399 37.500 7.24 0.00 0.00 1.40
3337 3514 6.785076 TCATATCCAAAGTACAAACAAGGGA 58.215 36.000 0.00 0.00 0.00 4.20
3340 3517 4.204012 TCCAAAGTACAAACAAGGGACAG 58.796 43.478 0.00 0.00 0.00 3.51
3355 3532 8.166422 ACAAGGGACAGTTTTCTTGTTATAAG 57.834 34.615 9.81 0.00 44.88 1.73
3433 3652 1.135859 AGTACGTAGTCAGTTTCGCCG 60.136 52.381 0.00 0.00 43.93 6.46
3445 3664 0.174845 TTTCGCCGAACCGATGAGAT 59.825 50.000 0.00 0.00 37.06 2.75
3453 3672 3.429547 CCGAACCGATGAGATGAGTTCTT 60.430 47.826 0.00 0.00 33.74 2.52
3467 3686 8.819643 AGATGAGTTCTTAAGAAGTACAACAC 57.180 34.615 22.61 11.54 37.79 3.32
3473 3692 2.165319 AAGAAGTACAACACGAGGGC 57.835 50.000 0.00 0.00 0.00 5.19
3516 3736 3.512724 TCACCAACTTACCTACAGGCTAC 59.487 47.826 0.00 0.00 39.32 3.58
3561 3783 4.137543 CCAATGTTGGCTATCTCCTAACC 58.862 47.826 0.00 0.00 42.21 2.85
3586 3808 0.108233 TTATGTACCGCGGACAACCC 60.108 55.000 35.90 12.51 0.00 4.11
3662 3891 3.769844 ACACACTAATACACCCTCCTCTG 59.230 47.826 0.00 0.00 0.00 3.35
3663 3892 4.023980 CACACTAATACACCCTCCTCTGA 58.976 47.826 0.00 0.00 0.00 3.27
3666 3895 4.466370 CACTAATACACCCTCCTCTGAACA 59.534 45.833 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.154827 TGGTTAGGAAAAGGGAGCTTG 57.845 47.619 0.00 0.00 0.00 4.01
1 2 3.397955 TCTTGGTTAGGAAAAGGGAGCTT 59.602 43.478 0.00 0.00 0.00 3.74
2 3 2.986728 TCTTGGTTAGGAAAAGGGAGCT 59.013 45.455 0.00 0.00 0.00 4.09
3 4 3.434940 TCTTGGTTAGGAAAAGGGAGC 57.565 47.619 0.00 0.00 0.00 4.70
4 5 6.691508 CATTTTCTTGGTTAGGAAAAGGGAG 58.308 40.000 0.00 0.00 42.24 4.30
5 6 5.011635 GCATTTTCTTGGTTAGGAAAAGGGA 59.988 40.000 12.37 0.00 42.24 4.20
6 7 5.237815 GCATTTTCTTGGTTAGGAAAAGGG 58.762 41.667 12.37 6.60 42.24 3.95
7 8 5.012046 AGGCATTTTCTTGGTTAGGAAAAGG 59.988 40.000 7.97 7.97 42.24 3.11
8 9 6.015095 AGAGGCATTTTCTTGGTTAGGAAAAG 60.015 38.462 0.00 0.00 42.24 2.27
9 10 5.838521 AGAGGCATTTTCTTGGTTAGGAAAA 59.161 36.000 0.00 0.00 42.83 2.29
10 11 5.393866 AGAGGCATTTTCTTGGTTAGGAAA 58.606 37.500 0.00 0.00 35.80 3.13
11 12 4.998051 AGAGGCATTTTCTTGGTTAGGAA 58.002 39.130 0.00 0.00 0.00 3.36
12 13 4.657814 AGAGGCATTTTCTTGGTTAGGA 57.342 40.909 0.00 0.00 0.00 2.94
13 14 6.834168 TTAAGAGGCATTTTCTTGGTTAGG 57.166 37.500 0.00 0.00 36.38 2.69
14 15 8.141268 TGTTTTAAGAGGCATTTTCTTGGTTAG 58.859 33.333 0.00 0.00 36.38 2.34
15 16 8.012957 TGTTTTAAGAGGCATTTTCTTGGTTA 57.987 30.769 0.00 0.00 36.38 2.85
16 17 6.883744 TGTTTTAAGAGGCATTTTCTTGGTT 58.116 32.000 0.00 0.00 36.38 3.67
17 18 6.478512 TGTTTTAAGAGGCATTTTCTTGGT 57.521 33.333 0.00 0.00 36.38 3.67
18 19 7.571798 GCATTGTTTTAAGAGGCATTTTCTTGG 60.572 37.037 0.00 0.00 36.38 3.61
19 20 7.293018 GCATTGTTTTAAGAGGCATTTTCTTG 58.707 34.615 0.00 0.00 36.38 3.02
20 21 6.427853 GGCATTGTTTTAAGAGGCATTTTCTT 59.572 34.615 0.00 0.00 38.40 2.52
21 22 5.934043 GGCATTGTTTTAAGAGGCATTTTCT 59.066 36.000 0.00 0.00 0.00 2.52
22 23 5.700373 TGGCATTGTTTTAAGAGGCATTTTC 59.300 36.000 0.00 0.00 0.00 2.29
23 24 5.619220 TGGCATTGTTTTAAGAGGCATTTT 58.381 33.333 0.00 0.00 0.00 1.82
24 25 5.221702 ACTGGCATTGTTTTAAGAGGCATTT 60.222 36.000 0.00 0.00 0.00 2.32
25 26 4.284234 ACTGGCATTGTTTTAAGAGGCATT 59.716 37.500 0.00 0.00 0.00 3.56
26 27 3.834231 ACTGGCATTGTTTTAAGAGGCAT 59.166 39.130 0.00 0.00 0.00 4.40
27 28 3.005684 CACTGGCATTGTTTTAAGAGGCA 59.994 43.478 0.00 0.00 0.00 4.75
28 29 3.255642 TCACTGGCATTGTTTTAAGAGGC 59.744 43.478 4.67 0.00 0.00 4.70
29 30 5.416952 AGATCACTGGCATTGTTTTAAGAGG 59.583 40.000 4.67 0.00 0.00 3.69
30 31 6.506500 AGATCACTGGCATTGTTTTAAGAG 57.493 37.500 4.67 0.00 0.00 2.85
31 32 9.330063 CTATAGATCACTGGCATTGTTTTAAGA 57.670 33.333 4.67 0.00 0.00 2.10
32 33 9.330063 TCTATAGATCACTGGCATTGTTTTAAG 57.670 33.333 4.67 0.00 0.00 1.85
33 34 9.109393 GTCTATAGATCACTGGCATTGTTTTAA 57.891 33.333 5.57 0.00 0.00 1.52
34 35 8.486210 AGTCTATAGATCACTGGCATTGTTTTA 58.514 33.333 5.57 0.00 0.00 1.52
35 36 7.341805 AGTCTATAGATCACTGGCATTGTTTT 58.658 34.615 5.57 0.00 0.00 2.43
36 37 6.893583 AGTCTATAGATCACTGGCATTGTTT 58.106 36.000 5.57 0.00 0.00 2.83
37 38 6.491714 AGTCTATAGATCACTGGCATTGTT 57.508 37.500 5.57 0.00 0.00 2.83
38 39 7.452813 TCATAGTCTATAGATCACTGGCATTGT 59.547 37.037 5.57 0.00 0.00 2.71
39 40 7.834803 TCATAGTCTATAGATCACTGGCATTG 58.165 38.462 5.57 0.00 0.00 2.82
40 41 7.892771 TCTCATAGTCTATAGATCACTGGCATT 59.107 37.037 5.57 0.00 0.00 3.56
41 42 7.409358 TCTCATAGTCTATAGATCACTGGCAT 58.591 38.462 5.57 0.00 0.00 4.40
42 43 6.784031 TCTCATAGTCTATAGATCACTGGCA 58.216 40.000 5.57 0.00 0.00 4.92
43 44 7.109501 TCTCTCATAGTCTATAGATCACTGGC 58.890 42.308 5.57 0.00 0.00 4.85
44 45 8.321353 ACTCTCTCATAGTCTATAGATCACTGG 58.679 40.741 5.57 0.00 0.00 4.00
55 56 9.423964 TCTCTGTTAGTACTCTCTCATAGTCTA 57.576 37.037 0.00 0.00 0.00 2.59
56 57 8.202137 GTCTCTGTTAGTACTCTCTCATAGTCT 58.798 40.741 0.00 0.00 0.00 3.24
57 58 8.202137 AGTCTCTGTTAGTACTCTCTCATAGTC 58.798 40.741 0.00 0.00 0.00 2.59
58 59 8.086143 AGTCTCTGTTAGTACTCTCTCATAGT 57.914 38.462 0.00 0.00 0.00 2.12
59 60 9.472361 GTAGTCTCTGTTAGTACTCTCTCATAG 57.528 40.741 0.00 0.00 0.00 2.23
60 61 8.979534 TGTAGTCTCTGTTAGTACTCTCTCATA 58.020 37.037 0.00 0.00 0.00 2.15
61 62 7.853299 TGTAGTCTCTGTTAGTACTCTCTCAT 58.147 38.462 0.00 0.00 0.00 2.90
62 63 7.242322 TGTAGTCTCTGTTAGTACTCTCTCA 57.758 40.000 0.00 0.00 0.00 3.27
63 64 8.550710 TTTGTAGTCTCTGTTAGTACTCTCTC 57.449 38.462 0.00 0.00 0.00 3.20
64 65 8.158789 ACTTTGTAGTCTCTGTTAGTACTCTCT 58.841 37.037 0.00 0.00 0.00 3.10
65 66 8.326680 ACTTTGTAGTCTCTGTTAGTACTCTC 57.673 38.462 0.00 0.00 0.00 3.20
66 67 8.569641 CAACTTTGTAGTCTCTGTTAGTACTCT 58.430 37.037 0.00 0.00 31.99 3.24
67 68 7.326547 GCAACTTTGTAGTCTCTGTTAGTACTC 59.673 40.741 0.00 0.00 31.99 2.59
68 69 7.146648 GCAACTTTGTAGTCTCTGTTAGTACT 58.853 38.462 0.00 0.00 31.99 2.73
69 70 6.921857 TGCAACTTTGTAGTCTCTGTTAGTAC 59.078 38.462 0.00 0.00 31.99 2.73
70 71 7.046292 TGCAACTTTGTAGTCTCTGTTAGTA 57.954 36.000 0.00 0.00 31.99 1.82
71 72 5.914033 TGCAACTTTGTAGTCTCTGTTAGT 58.086 37.500 0.00 0.00 31.99 2.24
72 73 6.646653 TGATGCAACTTTGTAGTCTCTGTTAG 59.353 38.462 0.00 0.00 31.99 2.34
73 74 6.521162 TGATGCAACTTTGTAGTCTCTGTTA 58.479 36.000 0.00 0.00 31.99 2.41
74 75 5.368145 TGATGCAACTTTGTAGTCTCTGTT 58.632 37.500 0.00 0.00 31.99 3.16
75 76 4.960938 TGATGCAACTTTGTAGTCTCTGT 58.039 39.130 0.00 0.00 31.99 3.41
76 77 4.391216 CCTGATGCAACTTTGTAGTCTCTG 59.609 45.833 0.00 0.00 31.99 3.35
77 78 4.573900 CCTGATGCAACTTTGTAGTCTCT 58.426 43.478 0.00 0.00 31.99 3.10
78 79 3.126000 GCCTGATGCAACTTTGTAGTCTC 59.874 47.826 0.00 0.00 40.77 3.36
79 80 3.077359 GCCTGATGCAACTTTGTAGTCT 58.923 45.455 0.00 0.00 40.77 3.24
80 81 3.477899 GCCTGATGCAACTTTGTAGTC 57.522 47.619 0.00 0.00 40.77 2.59
90 91 9.857080 AGGTGACTAATTTACTGCCTGATGCAA 62.857 40.741 0.00 0.00 46.01 4.08
91 92 8.490750 AGGTGACTAATTTACTGCCTGATGCA 62.491 42.308 0.00 0.00 44.88 3.96
92 93 4.035675 GGTGACTAATTTACTGCCTGATGC 59.964 45.833 0.00 0.00 41.77 3.91
93 94 5.431765 AGGTGACTAATTTACTGCCTGATG 58.568 41.667 0.00 0.00 40.61 3.07
94 95 5.700402 AGGTGACTAATTTACTGCCTGAT 57.300 39.130 0.00 0.00 40.61 2.90
95 96 5.221843 ACAAGGTGACTAATTTACTGCCTGA 60.222 40.000 0.00 0.00 42.68 3.86
96 97 5.003804 ACAAGGTGACTAATTTACTGCCTG 58.996 41.667 0.00 0.00 42.68 4.85
97 98 5.221843 TGACAAGGTGACTAATTTACTGCCT 60.222 40.000 0.00 0.00 42.68 4.75
98 99 5.001232 TGACAAGGTGACTAATTTACTGCC 58.999 41.667 0.00 0.00 42.68 4.85
99 100 5.122396 CCTGACAAGGTGACTAATTTACTGC 59.878 44.000 0.00 0.00 42.68 4.40
100 101 5.643777 CCCTGACAAGGTGACTAATTTACTG 59.356 44.000 0.00 0.00 42.74 2.74
101 102 5.309806 ACCCTGACAAGGTGACTAATTTACT 59.690 40.000 0.00 0.00 42.74 2.24
102 103 5.557866 ACCCTGACAAGGTGACTAATTTAC 58.442 41.667 0.00 0.00 42.74 2.01
103 104 5.836024 ACCCTGACAAGGTGACTAATTTA 57.164 39.130 0.00 0.00 42.74 1.40
104 105 4.724279 ACCCTGACAAGGTGACTAATTT 57.276 40.909 0.00 0.00 42.74 1.82
113 114 1.462238 AGGCTCACCCTGACAAGGT 60.462 57.895 0.00 0.00 44.28 3.50
114 115 3.488423 AGGCTCACCCTGACAAGG 58.512 61.111 0.00 0.00 44.28 3.61
122 123 2.269241 GTACAGCCAGGCTCACCC 59.731 66.667 12.53 0.00 36.40 4.61
123 124 1.376037 GTGTACAGCCAGGCTCACC 60.376 63.158 12.53 2.04 36.40 4.02
124 125 0.250295 TTGTGTACAGCCAGGCTCAC 60.250 55.000 20.31 20.31 36.40 3.51
125 126 0.035317 CTTGTGTACAGCCAGGCTCA 59.965 55.000 12.53 3.65 36.40 4.26
126 127 0.674895 CCTTGTGTACAGCCAGGCTC 60.675 60.000 12.53 0.30 36.40 4.70
127 128 1.376466 CCTTGTGTACAGCCAGGCT 59.624 57.895 8.70 8.70 40.77 4.58
128 129 1.675641 CCCTTGTGTACAGCCAGGC 60.676 63.158 1.84 1.84 0.00 4.85
129 130 1.675641 GCCCTTGTGTACAGCCAGG 60.676 63.158 0.00 1.63 0.00 4.45
130 131 0.613260 TAGCCCTTGTGTACAGCCAG 59.387 55.000 0.00 0.00 0.00 4.85
131 132 0.613260 CTAGCCCTTGTGTACAGCCA 59.387 55.000 0.00 0.00 0.00 4.75
132 133 0.107654 CCTAGCCCTTGTGTACAGCC 60.108 60.000 0.00 0.00 0.00 4.85
133 134 0.107654 CCCTAGCCCTTGTGTACAGC 60.108 60.000 0.00 0.00 0.00 4.40
134 135 1.066143 CACCCTAGCCCTTGTGTACAG 60.066 57.143 0.00 0.00 0.00 2.74
135 136 0.981183 CACCCTAGCCCTTGTGTACA 59.019 55.000 0.00 0.00 0.00 2.90
136 137 0.392595 GCACCCTAGCCCTTGTGTAC 60.393 60.000 0.00 0.00 0.00 2.90
137 138 0.546747 AGCACCCTAGCCCTTGTGTA 60.547 55.000 0.00 0.00 34.23 2.90
138 139 1.427072 AAGCACCCTAGCCCTTGTGT 61.427 55.000 0.00 0.00 34.23 3.72
139 140 0.678048 GAAGCACCCTAGCCCTTGTG 60.678 60.000 0.00 0.00 34.23 3.33
140 141 1.685820 GAAGCACCCTAGCCCTTGT 59.314 57.895 0.00 0.00 34.23 3.16
141 142 1.077429 GGAAGCACCCTAGCCCTTG 60.077 63.158 0.00 0.00 34.23 3.61
142 143 3.416351 GGAAGCACCCTAGCCCTT 58.584 61.111 0.00 0.00 34.23 3.95
155 156 0.897863 TTTGGCGGTTCATGGGGAAG 60.898 55.000 0.00 0.00 35.82 3.46
156 157 1.153989 TTTGGCGGTTCATGGGGAA 59.846 52.632 0.00 0.00 0.00 3.97
157 158 1.605165 GTTTGGCGGTTCATGGGGA 60.605 57.895 0.00 0.00 0.00 4.81
158 159 1.905843 TGTTTGGCGGTTCATGGGG 60.906 57.895 0.00 0.00 0.00 4.96
159 160 1.288752 GTGTTTGGCGGTTCATGGG 59.711 57.895 0.00 0.00 0.00 4.00
160 161 1.178534 AGGTGTTTGGCGGTTCATGG 61.179 55.000 0.00 0.00 0.00 3.66
161 162 1.199097 GTAGGTGTTTGGCGGTTCATG 59.801 52.381 0.00 0.00 0.00 3.07
162 163 1.202830 TGTAGGTGTTTGGCGGTTCAT 60.203 47.619 0.00 0.00 0.00 2.57
163 164 0.180642 TGTAGGTGTTTGGCGGTTCA 59.819 50.000 0.00 0.00 0.00 3.18
164 165 1.467342 GATGTAGGTGTTTGGCGGTTC 59.533 52.381 0.00 0.00 0.00 3.62
165 166 1.202830 TGATGTAGGTGTTTGGCGGTT 60.203 47.619 0.00 0.00 0.00 4.44
166 167 0.398696 TGATGTAGGTGTTTGGCGGT 59.601 50.000 0.00 0.00 0.00 5.68
167 168 1.670811 GATGATGTAGGTGTTTGGCGG 59.329 52.381 0.00 0.00 0.00 6.13
168 169 1.670811 GGATGATGTAGGTGTTTGGCG 59.329 52.381 0.00 0.00 0.00 5.69
169 170 2.945668 GAGGATGATGTAGGTGTTTGGC 59.054 50.000 0.00 0.00 0.00 4.52
170 171 4.220693 TGAGGATGATGTAGGTGTTTGG 57.779 45.455 0.00 0.00 0.00 3.28
171 172 6.260936 GGTTATGAGGATGATGTAGGTGTTTG 59.739 42.308 0.00 0.00 0.00 2.93
172 173 6.069673 TGGTTATGAGGATGATGTAGGTGTTT 60.070 38.462 0.00 0.00 0.00 2.83
173 174 5.428457 TGGTTATGAGGATGATGTAGGTGTT 59.572 40.000 0.00 0.00 0.00 3.32
174 175 4.968719 TGGTTATGAGGATGATGTAGGTGT 59.031 41.667 0.00 0.00 0.00 4.16
175 176 5.070981 ACTGGTTATGAGGATGATGTAGGTG 59.929 44.000 0.00 0.00 0.00 4.00
176 177 5.070981 CACTGGTTATGAGGATGATGTAGGT 59.929 44.000 0.00 0.00 0.00 3.08
177 178 5.070981 ACACTGGTTATGAGGATGATGTAGG 59.929 44.000 0.00 0.00 0.00 3.18
178 179 6.166984 ACACTGGTTATGAGGATGATGTAG 57.833 41.667 0.00 0.00 0.00 2.74
179 180 7.855784 ATACACTGGTTATGAGGATGATGTA 57.144 36.000 0.00 0.00 0.00 2.29
180 181 6.753913 ATACACTGGTTATGAGGATGATGT 57.246 37.500 0.00 0.00 0.00 3.06
181 182 9.730705 ATAAATACACTGGTTATGAGGATGATG 57.269 33.333 0.00 0.00 0.00 3.07
194 195 9.787435 TGACTTTCAGTAAATAAATACACTGGT 57.213 29.630 0.00 0.00 39.09 4.00
208 209 9.332502 TGTTTGCTTTACTATGACTTTCAGTAA 57.667 29.630 0.00 0.00 33.95 2.24
209 210 8.896320 TGTTTGCTTTACTATGACTTTCAGTA 57.104 30.769 0.00 0.00 0.00 2.74
210 211 7.801716 TGTTTGCTTTACTATGACTTTCAGT 57.198 32.000 0.00 0.00 0.00 3.41
211 212 9.683069 AATTGTTTGCTTTACTATGACTTTCAG 57.317 29.630 0.00 0.00 0.00 3.02
216 217 9.683069 CAGAAAATTGTTTGCTTTACTATGACT 57.317 29.630 0.00 0.00 0.00 3.41
217 218 9.677567 TCAGAAAATTGTTTGCTTTACTATGAC 57.322 29.630 0.00 0.00 0.00 3.06
218 219 9.897744 CTCAGAAAATTGTTTGCTTTACTATGA 57.102 29.630 0.00 0.00 0.00 2.15
219 220 9.132521 CCTCAGAAAATTGTTTGCTTTACTATG 57.867 33.333 0.00 0.00 0.00 2.23
220 221 9.077885 TCCTCAGAAAATTGTTTGCTTTACTAT 57.922 29.630 0.00 0.00 0.00 2.12
221 222 8.458573 TCCTCAGAAAATTGTTTGCTTTACTA 57.541 30.769 0.00 0.00 0.00 1.82
222 223 7.346751 TCCTCAGAAAATTGTTTGCTTTACT 57.653 32.000 0.00 0.00 0.00 2.24
223 224 8.419076 TTTCCTCAGAAAATTGTTTGCTTTAC 57.581 30.769 0.00 0.00 39.05 2.01
224 225 9.612066 AATTTCCTCAGAAAATTGTTTGCTTTA 57.388 25.926 0.00 0.00 44.91 1.85
225 226 8.510243 AATTTCCTCAGAAAATTGTTTGCTTT 57.490 26.923 0.00 0.00 44.91 3.51
226 227 9.783081 ATAATTTCCTCAGAAAATTGTTTGCTT 57.217 25.926 0.00 0.00 44.91 3.91
232 233 9.860898 GCAACTATAATTTCCTCAGAAAATTGT 57.139 29.630 0.00 0.00 44.91 2.71
235 236 8.907885 GGAGCAACTATAATTTCCTCAGAAAAT 58.092 33.333 0.00 0.00 44.91 1.82
236 237 7.888021 TGGAGCAACTATAATTTCCTCAGAAAA 59.112 33.333 0.00 0.00 44.91 2.29
237 238 7.402054 TGGAGCAACTATAATTTCCTCAGAAA 58.598 34.615 0.00 0.00 45.78 2.52
238 239 6.957631 TGGAGCAACTATAATTTCCTCAGAA 58.042 36.000 0.00 0.00 0.00 3.02
239 240 6.560003 TGGAGCAACTATAATTTCCTCAGA 57.440 37.500 0.00 0.00 0.00 3.27
240 241 7.814264 AATGGAGCAACTATAATTTCCTCAG 57.186 36.000 0.00 0.00 0.00 3.35
241 242 7.012327 CGAAATGGAGCAACTATAATTTCCTCA 59.988 37.037 0.00 0.00 32.81 3.86
242 243 7.226720 TCGAAATGGAGCAACTATAATTTCCTC 59.773 37.037 0.00 0.00 32.81 3.71
243 244 7.054124 TCGAAATGGAGCAACTATAATTTCCT 58.946 34.615 0.00 0.00 32.81 3.36
244 245 7.226720 TCTCGAAATGGAGCAACTATAATTTCC 59.773 37.037 0.00 0.00 32.81 3.13
245 246 8.142994 TCTCGAAATGGAGCAACTATAATTTC 57.857 34.615 0.00 0.00 33.98 2.17
246 247 8.506168 TTCTCGAAATGGAGCAACTATAATTT 57.494 30.769 0.00 0.00 33.98 1.82
247 248 8.682936 ATTCTCGAAATGGAGCAACTATAATT 57.317 30.769 0.00 0.00 33.98 1.40
248 249 9.950496 ATATTCTCGAAATGGAGCAACTATAAT 57.050 29.630 0.00 0.00 33.98 1.28
251 252 9.209175 GTTATATTCTCGAAATGGAGCAACTAT 57.791 33.333 0.00 0.00 33.98 2.12
252 253 7.656137 GGTTATATTCTCGAAATGGAGCAACTA 59.344 37.037 0.00 0.00 33.98 2.24
253 254 6.483640 GGTTATATTCTCGAAATGGAGCAACT 59.516 38.462 0.00 0.00 33.98 3.16
254 255 6.260050 TGGTTATATTCTCGAAATGGAGCAAC 59.740 38.462 0.00 0.00 33.98 4.17
255 256 6.353323 TGGTTATATTCTCGAAATGGAGCAA 58.647 36.000 0.00 0.00 33.98 3.91
256 257 5.924356 TGGTTATATTCTCGAAATGGAGCA 58.076 37.500 0.00 0.00 33.98 4.26
257 258 6.146347 GTCTGGTTATATTCTCGAAATGGAGC 59.854 42.308 0.00 0.00 33.98 4.70
258 259 7.210174 TGTCTGGTTATATTCTCGAAATGGAG 58.790 38.462 0.00 0.00 35.32 3.86
259 260 7.119709 TGTCTGGTTATATTCTCGAAATGGA 57.880 36.000 0.00 0.00 0.00 3.41
260 261 7.095060 CCATGTCTGGTTATATTCTCGAAATGG 60.095 40.741 0.00 0.00 37.79 3.16
261 262 7.095060 CCCATGTCTGGTTATATTCTCGAAATG 60.095 40.741 0.00 0.00 41.37 2.32
262 263 6.936900 CCCATGTCTGGTTATATTCTCGAAAT 59.063 38.462 0.00 0.00 41.37 2.17
263 264 6.099125 TCCCATGTCTGGTTATATTCTCGAAA 59.901 38.462 0.00 0.00 41.37 3.46
264 265 5.600898 TCCCATGTCTGGTTATATTCTCGAA 59.399 40.000 0.00 0.00 41.37 3.71
265 266 5.144832 TCCCATGTCTGGTTATATTCTCGA 58.855 41.667 0.00 0.00 41.37 4.04
266 267 5.468540 TCCCATGTCTGGTTATATTCTCG 57.531 43.478 0.00 0.00 41.37 4.04
267 268 7.939039 TCAAATCCCATGTCTGGTTATATTCTC 59.061 37.037 0.00 0.00 41.37 2.87
268 269 7.815383 TCAAATCCCATGTCTGGTTATATTCT 58.185 34.615 0.00 0.00 41.37 2.40
269 270 7.939039 TCTCAAATCCCATGTCTGGTTATATTC 59.061 37.037 0.00 0.00 41.37 1.75
270 271 7.721399 GTCTCAAATCCCATGTCTGGTTATATT 59.279 37.037 0.00 0.00 41.37 1.28
271 272 7.072961 AGTCTCAAATCCCATGTCTGGTTATAT 59.927 37.037 0.00 0.00 41.37 0.86
272 273 6.386927 AGTCTCAAATCCCATGTCTGGTTATA 59.613 38.462 0.00 0.00 41.37 0.98
273 274 5.192522 AGTCTCAAATCCCATGTCTGGTTAT 59.807 40.000 0.00 0.00 41.37 1.89
274 275 4.536090 AGTCTCAAATCCCATGTCTGGTTA 59.464 41.667 0.00 0.00 41.37 2.85
275 276 3.331889 AGTCTCAAATCCCATGTCTGGTT 59.668 43.478 0.00 0.00 41.37 3.67
276 277 2.915604 AGTCTCAAATCCCATGTCTGGT 59.084 45.455 0.00 0.00 41.37 4.00
277 278 3.641434 AGTCTCAAATCCCATGTCTGG 57.359 47.619 0.00 0.00 42.73 3.86
278 279 4.582869 TGAAGTCTCAAATCCCATGTCTG 58.417 43.478 0.00 0.00 0.00 3.51
279 280 4.916041 TGAAGTCTCAAATCCCATGTCT 57.084 40.909 0.00 0.00 0.00 3.41
280 281 5.529060 GGTATGAAGTCTCAAATCCCATGTC 59.471 44.000 0.00 0.00 34.49 3.06
281 282 5.440610 GGTATGAAGTCTCAAATCCCATGT 58.559 41.667 0.00 0.00 34.49 3.21
282 283 4.512944 CGGTATGAAGTCTCAAATCCCATG 59.487 45.833 0.00 0.00 34.49 3.66
283 284 4.444876 CCGGTATGAAGTCTCAAATCCCAT 60.445 45.833 0.00 0.00 34.49 4.00
284 285 3.118408 CCGGTATGAAGTCTCAAATCCCA 60.118 47.826 0.00 0.00 34.49 4.37
285 286 3.467803 CCGGTATGAAGTCTCAAATCCC 58.532 50.000 0.00 0.00 34.49 3.85
286 287 2.872858 GCCGGTATGAAGTCTCAAATCC 59.127 50.000 1.90 0.00 34.49 3.01
287 288 3.531538 TGCCGGTATGAAGTCTCAAATC 58.468 45.455 1.90 0.00 34.49 2.17
288 289 3.627395 TGCCGGTATGAAGTCTCAAAT 57.373 42.857 1.90 0.00 34.49 2.32
289 290 3.071479 GTTGCCGGTATGAAGTCTCAAA 58.929 45.455 1.90 0.00 34.49 2.69
290 291 2.037902 TGTTGCCGGTATGAAGTCTCAA 59.962 45.455 1.90 0.00 34.49 3.02
291 292 1.621317 TGTTGCCGGTATGAAGTCTCA 59.379 47.619 1.90 0.00 35.56 3.27
292 293 2.380084 TGTTGCCGGTATGAAGTCTC 57.620 50.000 1.90 0.00 0.00 3.36
293 294 2.301870 TCTTGTTGCCGGTATGAAGTCT 59.698 45.455 1.90 0.00 0.00 3.24
294 295 2.695359 TCTTGTTGCCGGTATGAAGTC 58.305 47.619 1.90 0.00 0.00 3.01
295 296 2.851263 TCTTGTTGCCGGTATGAAGT 57.149 45.000 1.90 0.00 0.00 3.01
328 329 5.035784 AGATTTCTTGCGCTAACAGTTTC 57.964 39.130 9.73 0.00 0.00 2.78
403 405 7.766278 TGAACAGAGCTTTCAGTTATAGGATTC 59.234 37.037 0.00 0.00 0.00 2.52
451 453 4.661222 TGTGAATGCATTTGGACCTTCTA 58.339 39.130 14.33 0.00 0.00 2.10
556 562 3.712016 TGAACCCTTGCAGCTGTATAA 57.288 42.857 16.64 7.72 0.00 0.98
560 566 0.746659 GTTTGAACCCTTGCAGCTGT 59.253 50.000 16.64 0.00 0.00 4.40
561 567 0.318107 CGTTTGAACCCTTGCAGCTG 60.318 55.000 10.11 10.11 0.00 4.24
562 568 0.751643 ACGTTTGAACCCTTGCAGCT 60.752 50.000 0.00 0.00 0.00 4.24
563 569 0.317854 GACGTTTGAACCCTTGCAGC 60.318 55.000 0.00 0.00 0.00 5.25
564 570 0.310854 GGACGTTTGAACCCTTGCAG 59.689 55.000 0.00 0.00 0.00 4.41
565 571 1.440938 CGGACGTTTGAACCCTTGCA 61.441 55.000 0.00 0.00 0.00 4.08
584 590 0.249238 CAGATCCACTAGCCTCGCAC 60.249 60.000 0.00 0.00 0.00 5.34
588 594 3.068024 CACTCTTCAGATCCACTAGCCTC 59.932 52.174 0.00 0.00 0.00 4.70
599 605 0.035630 GGGTGCTGCACTCTTCAGAT 60.036 55.000 29.54 0.00 31.17 2.90
618 624 6.474819 TCTGAAAATTGCATGCATTTCTTG 57.525 33.333 31.61 25.96 33.90 3.02
726 732 3.116091 ACTGACCCAGTTTGGCTTG 57.884 52.632 0.00 0.00 42.59 4.01
741 747 1.732259 GTCTGCCGTTACATCCAACTG 59.268 52.381 0.00 0.00 0.00 3.16
751 758 5.391523 GCTTGAAACATTATGTCTGCCGTTA 60.392 40.000 0.00 0.00 0.00 3.18
820 837 1.270550 GTTGGCACAGATGTTTGGAGG 59.729 52.381 0.00 0.00 42.39 4.30
883 900 0.614697 CCAAGTTGGGTTGGGGATCC 60.615 60.000 14.64 1.92 43.02 3.36
924 942 1.221414 GATGGGATCAAGTAGCGCAC 58.779 55.000 11.47 5.97 39.45 5.34
927 945 2.898729 ACTGATGGGATCAAGTAGCG 57.101 50.000 0.00 0.00 39.11 4.26
928 946 4.574013 CAGAAACTGATGGGATCAAGTAGC 59.426 45.833 0.00 0.00 39.11 3.58
929 947 4.574013 GCAGAAACTGATGGGATCAAGTAG 59.426 45.833 2.81 0.00 39.11 2.57
966 984 5.923204 AGGAGAATGCCTTCTTAGTATGTG 58.077 41.667 5.67 0.00 41.87 3.21
967 985 6.567602 AAGGAGAATGCCTTCTTAGTATGT 57.432 37.500 5.67 0.00 44.89 2.29
987 1005 0.971386 AGGCCATTTGTGCAAGAAGG 59.029 50.000 5.01 0.00 0.00 3.46
1029 1048 3.792956 CACAACACAAGAACAATGACAGC 59.207 43.478 0.00 0.00 0.00 4.40
1087 1106 0.886490 CTATGGTCAGCCCCATTCGC 60.886 60.000 5.57 0.00 42.70 4.70
1191 1210 7.626390 AGGTGGTTTTGCACTATACTATACAA 58.374 34.615 0.00 0.00 0.00 2.41
1269 1322 2.030363 CGCCTTTGACAATGCCTACAAA 60.030 45.455 5.03 0.00 0.00 2.83
1523 1579 9.120538 GTATCCTCTATCCAGTATGATCTCTTC 57.879 40.741 0.00 0.00 39.69 2.87
1604 1660 1.682854 CCATTTCCATCAATGGTCCCG 59.317 52.381 8.82 0.00 45.83 5.14
1641 1697 8.593492 AGTTTTGAGTTTATTTTGCAGGAATC 57.407 30.769 1.19 0.00 0.00 2.52
1643 1699 6.695278 CGAGTTTTGAGTTTATTTTGCAGGAA 59.305 34.615 0.00 0.00 0.00 3.36
1697 1753 8.810652 TGCAATTTTCTAGTGGTTTTCATTAC 57.189 30.769 0.00 0.00 0.00 1.89
1764 1823 7.212976 AGAAAGCTTTCAGGAAAAAGGAAATC 58.787 34.615 34.39 8.16 39.61 2.17
1825 1886 2.338015 CGTTGGAGCTTGCCTGCAT 61.338 57.895 0.00 0.00 41.82 3.96
1869 1936 6.153000 AGGTTACTAGATCGGAATATGCGAAT 59.847 38.462 0.00 0.00 44.81 3.34
1891 1963 8.034804 GCCAATATGTAATCAAGAAAACAAGGT 58.965 33.333 0.00 0.00 0.00 3.50
1937 2010 2.568623 AGAACGTCAAAGCCTGGAAT 57.431 45.000 0.00 0.00 0.00 3.01
2051 2124 1.267806 GGTGCTGTGATTGACAAGTGG 59.732 52.381 0.00 0.00 32.80 4.00
2053 2126 1.609208 GGGTGCTGTGATTGACAAGT 58.391 50.000 0.00 0.00 32.80 3.16
2055 2128 0.888736 CCGGGTGCTGTGATTGACAA 60.889 55.000 0.00 0.00 32.80 3.18
2252 2325 1.580845 CTTGGGCTTGAGAGTTGCGG 61.581 60.000 0.00 0.00 0.00 5.69
2399 2472 2.289002 GTCGATGATGATTGGGTTCTGC 59.711 50.000 0.00 0.00 0.00 4.26
2408 2481 5.595885 CAGTAGTTCTGGTCGATGATGATT 58.404 41.667 0.00 0.00 40.23 2.57
2506 2579 5.797909 CGCTAGATTATATCTATGCGCAC 57.202 43.478 14.90 0.00 44.25 5.34
2538 2679 0.719465 CGGCCGATTTCTACACACAC 59.281 55.000 24.07 0.00 0.00 3.82
2583 2724 1.818674 GCACTTGTCCCCCTAATGTTG 59.181 52.381 0.00 0.00 0.00 3.33
2639 2780 0.334335 TATCCCATGGCAAGGCACAA 59.666 50.000 6.09 0.00 0.00 3.33
2685 2826 0.460987 CATCACCACCTCCTCGCTTC 60.461 60.000 0.00 0.00 0.00 3.86
2714 2855 3.508762 CTCCATTTTGCATTCTCACAGC 58.491 45.455 0.00 0.00 0.00 4.40
2745 2886 1.402968 CATGGCTGTGGCATAACTGTC 59.597 52.381 6.30 0.00 47.00 3.51
2830 2986 5.391312 ACTATCAAAACATGCAACCCTTC 57.609 39.130 0.00 0.00 0.00 3.46
2838 2994 4.332819 AGGAAGCGTACTATCAAAACATGC 59.667 41.667 0.00 0.00 0.00 4.06
2849 3006 4.439700 CGGAAAATCAGAGGAAGCGTACTA 60.440 45.833 0.00 0.00 0.00 1.82
2850 3007 3.676324 CGGAAAATCAGAGGAAGCGTACT 60.676 47.826 0.00 0.00 0.00 2.73
2851 3008 2.603560 CGGAAAATCAGAGGAAGCGTAC 59.396 50.000 0.00 0.00 0.00 3.67
3036 3194 4.444388 CGCTCCGTTATACGTACAGTACTA 59.556 45.833 9.10 1.51 40.58 1.82
3037 3195 3.246226 CGCTCCGTTATACGTACAGTACT 59.754 47.826 9.10 0.00 40.58 2.73
3038 3196 3.535860 CGCTCCGTTATACGTACAGTAC 58.464 50.000 0.00 0.00 40.58 2.73
3041 3199 1.599071 TCCGCTCCGTTATACGTACAG 59.401 52.381 0.00 0.00 40.58 2.74
3042 3200 1.662517 TCCGCTCCGTTATACGTACA 58.337 50.000 0.00 0.00 40.58 2.90
3043 3201 2.287915 TCTTCCGCTCCGTTATACGTAC 59.712 50.000 0.00 0.00 40.58 3.67
3044 3202 2.560504 TCTTCCGCTCCGTTATACGTA 58.439 47.619 0.00 0.00 40.58 3.57
3045 3203 1.382522 TCTTCCGCTCCGTTATACGT 58.617 50.000 0.00 0.00 40.58 3.57
3046 3204 2.701073 ATCTTCCGCTCCGTTATACG 57.299 50.000 0.00 0.00 42.11 3.06
3047 3205 4.762956 ACTATCTTCCGCTCCGTTATAC 57.237 45.455 0.00 0.00 0.00 1.47
3096 3254 4.479158 AGGGTTTATGCTCTCCACAAAAA 58.521 39.130 0.00 0.00 0.00 1.94
3097 3255 4.112634 AGGGTTTATGCTCTCCACAAAA 57.887 40.909 0.00 0.00 0.00 2.44
3099 3257 3.806949 AAGGGTTTATGCTCTCCACAA 57.193 42.857 0.00 0.00 0.00 3.33
3102 3260 2.569853 TCGAAAGGGTTTATGCTCTCCA 59.430 45.455 0.00 0.00 0.00 3.86
3103 3261 3.198872 CTCGAAAGGGTTTATGCTCTCC 58.801 50.000 0.00 0.00 0.00 3.71
3107 3265 2.489938 TGCTCGAAAGGGTTTATGCT 57.510 45.000 0.00 0.00 0.00 3.79
3121 3296 2.604462 GCCCAAATTTGCTAAATGCTCG 59.396 45.455 12.92 0.00 43.37 5.03
3136 3311 2.083774 CGAGTAGAAATGCTGCCCAAA 58.916 47.619 0.00 0.00 0.00 3.28
3143 3319 3.876274 TTCAGCTCGAGTAGAAATGCT 57.124 42.857 15.13 0.00 0.00 3.79
3147 3323 3.306088 CCCAGTTTCAGCTCGAGTAGAAA 60.306 47.826 22.15 22.15 0.00 2.52
3156 3332 6.264067 AGCATATAATTTCCCAGTTTCAGCTC 59.736 38.462 0.00 0.00 0.00 4.09
3188 3364 6.282199 TCTCATAGTACCGCTTCTTCTTTT 57.718 37.500 0.00 0.00 0.00 2.27
3196 3372 2.463752 TGGGTTCTCATAGTACCGCTT 58.536 47.619 0.00 0.00 36.62 4.68
3200 3376 7.120923 TGTAGATTTGGGTTCTCATAGTACC 57.879 40.000 0.00 0.00 35.22 3.34
3219 3395 9.733556 TTGATAGCCAAGATTTTAACTTGTAGA 57.266 29.630 0.00 0.00 41.88 2.59
3234 3410 8.843262 TCATGACAAATATCTTTGATAGCCAAG 58.157 33.333 10.27 0.00 43.71 3.61
3247 3423 9.630098 AACAATTGTGAAGTCATGACAAATATC 57.370 29.630 27.02 16.02 33.50 1.63
3278 3454 1.340889 GGCCACTTGACTGCATTTTCA 59.659 47.619 0.00 0.00 0.00 2.69
3290 3466 8.600449 TGAATAATTTACTTTTTGGCCACTTG 57.400 30.769 3.88 0.00 0.00 3.16
3337 3514 9.899226 GATCTTTGCTTATAACAAGAAAACTGT 57.101 29.630 2.58 0.00 0.00 3.55
3340 3517 9.607285 TTCGATCTTTGCTTATAACAAGAAAAC 57.393 29.630 0.00 0.00 0.00 2.43
3353 3530 3.695830 TGTACCCTTCGATCTTTGCTT 57.304 42.857 0.00 0.00 0.00 3.91
3354 3531 3.914426 ATGTACCCTTCGATCTTTGCT 57.086 42.857 0.00 0.00 0.00 3.91
3355 3532 4.034510 CAGAATGTACCCTTCGATCTTTGC 59.965 45.833 0.00 0.00 0.00 3.68
3433 3652 6.565234 TCTTAAGAACTCATCTCATCGGTTC 58.435 40.000 1.68 0.00 37.42 3.62
3445 3664 6.798482 TCGTGTTGTACTTCTTAAGAACTCA 58.202 36.000 13.99 10.16 0.00 3.41
3453 3672 2.352030 CGCCCTCGTGTTGTACTTCTTA 60.352 50.000 0.00 0.00 0.00 2.10
3467 3686 1.153249 TTATTCTTGCCCGCCCTCG 60.153 57.895 0.00 0.00 0.00 4.63
3473 3692 0.179174 GTTGCCGTTATTCTTGCCCG 60.179 55.000 0.00 0.00 0.00 6.13
3516 3736 6.266330 TGGGTAGATACTCTGATGTTCATCTG 59.734 42.308 12.94 12.25 0.00 2.90
3542 3762 4.423625 GTGGTTAGGAGATAGCCAACAT 57.576 45.455 0.00 0.00 45.32 2.71
3561 3783 0.742505 TCCGCGGTACATAAGAGGTG 59.257 55.000 27.15 0.00 0.00 4.00
3586 3808 1.545582 ACTGACCATTTGGCAAATCGG 59.454 47.619 26.13 26.13 39.32 4.18
3655 3884 1.674221 CGGGCTCTTTGTTCAGAGGAG 60.674 57.143 0.08 0.00 40.79 3.69
3662 3891 4.876107 TCATATCTTTCGGGCTCTTTGTTC 59.124 41.667 0.00 0.00 0.00 3.18
3663 3892 4.843728 TCATATCTTTCGGGCTCTTTGTT 58.156 39.130 0.00 0.00 0.00 2.83
3666 3895 4.843728 TGTTCATATCTTTCGGGCTCTTT 58.156 39.130 0.00 0.00 0.00 2.52
3753 3982 5.247110 AGCTGACCTCTCTTATTGTTGAGAA 59.753 40.000 0.00 0.00 38.64 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.