Multiple sequence alignment - TraesCS7A01G161700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G161700 chr7A 100.000 2447 0 0 1 2447 118236128 118238574 0.000000e+00 4519
1 TraesCS7A01G161700 chr7A 95.652 115 4 1 2333 2447 724318803 724318690 1.490000e-42 183
2 TraesCS7A01G161700 chr5D 94.817 984 42 7 1 977 218116341 218115360 0.000000e+00 1526
3 TraesCS7A01G161700 chr7D 94.456 992 43 11 1 983 629877768 629878756 0.000000e+00 1517
4 TraesCS7A01G161700 chr7D 94.534 988 43 8 1 979 194221575 194222560 0.000000e+00 1515
5 TraesCS7A01G161700 chr7D 94.254 992 46 10 1 983 581070211 581069222 0.000000e+00 1506
6 TraesCS7A01G161700 chr4D 94.444 990 46 8 1 983 8843512 8844499 0.000000e+00 1515
7 TraesCS7A01G161700 chr4D 94.603 982 44 7 4 978 21202330 21201351 0.000000e+00 1511
8 TraesCS7A01G161700 chr4D 94.254 992 46 9 1 983 419417128 419416139 0.000000e+00 1506
9 TraesCS7A01G161700 chr4D 89.511 839 83 2 978 1815 70379211 70378377 0.000000e+00 1057
10 TraesCS7A01G161700 chr4D 87.555 458 37 16 1808 2254 6580710 6581158 1.680000e-141 512
11 TraesCS7A01G161700 chr2D 94.608 983 46 5 1 977 88110317 88109336 0.000000e+00 1515
12 TraesCS7A01G161700 chr2D 91.190 840 71 3 978 1815 95525815 95526653 0.000000e+00 1138
13 TraesCS7A01G161700 chr2D 90.487 452 31 11 1811 2254 95526697 95527144 9.750000e-164 586
14 TraesCS7A01G161700 chr2D 91.339 127 10 1 2321 2447 110639356 110639231 3.230000e-39 172
15 TraesCS7A01G161700 chr2D 97.059 102 3 0 2346 2447 466806449 466806550 3.230000e-39 172
16 TraesCS7A01G161700 chr6D 94.254 992 46 9 1 983 366667931 366666942 0.000000e+00 1506
17 TraesCS7A01G161700 chr6D 95.098 102 5 0 2346 2447 17183380 17183279 7.000000e-36 161
18 TraesCS7A01G161700 chr6D 88.889 99 11 0 2346 2444 436424865 436424963 3.300000e-24 122
19 TraesCS7A01G161700 chr4B 93.921 839 50 1 978 1815 663743070 663742232 0.000000e+00 1266
20 TraesCS7A01G161700 chr4B 88.558 839 95 1 978 1815 28215991 28216829 0.000000e+00 1016
21 TraesCS7A01G161700 chr3D 95.873 727 29 1 1090 1815 79286666 79287392 0.000000e+00 1175
22 TraesCS7A01G161700 chr3D 91.741 787 62 3 1031 1815 564177089 564176304 0.000000e+00 1090
23 TraesCS7A01G161700 chr3D 88.319 839 95 2 978 1815 2114832 2113996 0.000000e+00 1003
24 TraesCS7A01G161700 chr3D 91.031 446 34 5 1811 2254 564176260 564175819 4.500000e-167 597
25 TraesCS7A01G161700 chr3D 92.124 419 29 4 1808 2224 79287433 79287849 2.710000e-164 588
26 TraesCS7A01G161700 chr3D 97.826 92 2 0 2356 2447 576316191 576316100 2.520000e-35 159
27 TraesCS7A01G161700 chr3A 89.988 839 83 1 978 1815 698746047 698745209 0.000000e+00 1083
28 TraesCS7A01G161700 chr3A 91.704 446 33 4 1811 2254 698745165 698744722 1.240000e-172 616
29 TraesCS7A01G161700 chr5B 88.200 839 96 3 978 1815 546313374 546312538 0.000000e+00 998
30 TraesCS7A01G161700 chr5B 87.168 452 50 7 1811 2258 546312494 546312047 7.810000e-140 507
31 TraesCS7A01G161700 chr3B 91.461 445 35 3 1811 2254 751948566 751948124 2.080000e-170 608
32 TraesCS7A01G161700 chr3B 92.373 118 8 1 2330 2447 537694297 537694413 1.510000e-37 167
33 TraesCS7A01G161700 chr2B 88.616 448 47 4 1808 2253 649461455 649461900 2.140000e-150 542
34 TraesCS7A01G161700 chr2B 95.652 115 4 1 2333 2447 744111084 744110971 1.490000e-42 183
35 TraesCS7A01G161700 chr5A 86.755 453 44 13 1811 2254 554521164 554520719 7.860000e-135 490
36 TraesCS7A01G161700 chr1A 92.157 102 8 0 2346 2447 72341266 72341165 7.050000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G161700 chr7A 118236128 118238574 2446 False 4519.0 4519 100.0000 1 2447 1 chr7A.!!$F1 2446
1 TraesCS7A01G161700 chr5D 218115360 218116341 981 True 1526.0 1526 94.8170 1 977 1 chr5D.!!$R1 976
2 TraesCS7A01G161700 chr7D 629877768 629878756 988 False 1517.0 1517 94.4560 1 983 1 chr7D.!!$F2 982
3 TraesCS7A01G161700 chr7D 194221575 194222560 985 False 1515.0 1515 94.5340 1 979 1 chr7D.!!$F1 978
4 TraesCS7A01G161700 chr7D 581069222 581070211 989 True 1506.0 1506 94.2540 1 983 1 chr7D.!!$R1 982
5 TraesCS7A01G161700 chr4D 8843512 8844499 987 False 1515.0 1515 94.4440 1 983 1 chr4D.!!$F2 982
6 TraesCS7A01G161700 chr4D 21201351 21202330 979 True 1511.0 1511 94.6030 4 978 1 chr4D.!!$R1 974
7 TraesCS7A01G161700 chr4D 419416139 419417128 989 True 1506.0 1506 94.2540 1 983 1 chr4D.!!$R3 982
8 TraesCS7A01G161700 chr4D 70378377 70379211 834 True 1057.0 1057 89.5110 978 1815 1 chr4D.!!$R2 837
9 TraesCS7A01G161700 chr2D 88109336 88110317 981 True 1515.0 1515 94.6080 1 977 1 chr2D.!!$R1 976
10 TraesCS7A01G161700 chr2D 95525815 95527144 1329 False 862.0 1138 90.8385 978 2254 2 chr2D.!!$F2 1276
11 TraesCS7A01G161700 chr6D 366666942 366667931 989 True 1506.0 1506 94.2540 1 983 1 chr6D.!!$R2 982
12 TraesCS7A01G161700 chr4B 663742232 663743070 838 True 1266.0 1266 93.9210 978 1815 1 chr4B.!!$R1 837
13 TraesCS7A01G161700 chr4B 28215991 28216829 838 False 1016.0 1016 88.5580 978 1815 1 chr4B.!!$F1 837
14 TraesCS7A01G161700 chr3D 2113996 2114832 836 True 1003.0 1003 88.3190 978 1815 1 chr3D.!!$R1 837
15 TraesCS7A01G161700 chr3D 79286666 79287849 1183 False 881.5 1175 93.9985 1090 2224 2 chr3D.!!$F1 1134
16 TraesCS7A01G161700 chr3D 564175819 564177089 1270 True 843.5 1090 91.3860 1031 2254 2 chr3D.!!$R3 1223
17 TraesCS7A01G161700 chr3A 698744722 698746047 1325 True 849.5 1083 90.8460 978 2254 2 chr3A.!!$R1 1276
18 TraesCS7A01G161700 chr5B 546312047 546313374 1327 True 752.5 998 87.6840 978 2258 2 chr5B.!!$R1 1280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
91 92 0.178926 TCCGGGACTCCAAACTACCA 60.179 55.0 0.0 0.0 0.0 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2022 0.512952 GCGCCATACAATCCTAAGCG 59.487 55.0 0.0 0.0 44.54 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 0.389757 GACTCCTCGTCATTAGCCCC 59.610 60.000 0.00 0.00 42.37 5.80
91 92 0.178926 TCCGGGACTCCAAACTACCA 60.179 55.000 0.00 0.00 0.00 3.25
133 135 9.645059 CATAAACTCATAATACCGATCATCACT 57.355 33.333 0.00 0.00 0.00 3.41
307 309 2.925724 ACGTTGTTCCCTTTGTCATCA 58.074 42.857 0.00 0.00 0.00 3.07
390 392 4.499183 CGGCAAGTCTCTTTACTCATTCT 58.501 43.478 0.00 0.00 0.00 2.40
433 435 7.986085 ACTAACTCATTAGTCACATTGCTTT 57.014 32.000 0.00 0.00 46.73 3.51
620 622 4.695455 ACACAAAGTGTTCCTCCGATAATG 59.305 41.667 0.00 0.00 45.08 1.90
1004 1015 5.513094 CCAACCTTAGAGAGTTCAACATGGA 60.513 44.000 0.00 0.00 0.00 3.41
1006 1017 4.841246 ACCTTAGAGAGTTCAACATGGACT 59.159 41.667 0.00 0.00 0.00 3.85
1012 1023 5.888161 AGAGAGTTCAACATGGACTTTTTGT 59.112 36.000 0.00 0.00 0.00 2.83
1062 1073 5.250543 TGACAGGGATAGTGATTGGAAGAAA 59.749 40.000 0.00 0.00 0.00 2.52
1083 1094 8.723942 AGAAAATGCTGACCTACAAGTATAAG 57.276 34.615 0.00 0.00 0.00 1.73
1088 1099 7.949690 TGCTGACCTACAAGTATAAGACTAA 57.050 36.000 0.00 0.00 37.44 2.24
1265 1276 5.467035 TCTCTTAAAACTGCATTTTGGGG 57.533 39.130 2.45 0.00 40.80 4.96
1425 1437 3.009033 CAGTGTTCTATCTGGTTCCCCAA 59.991 47.826 0.00 0.00 41.27 4.12
1470 1482 2.229062 TCTTCCAGCAAGTACTCTGTCG 59.771 50.000 9.92 0.00 33.27 4.35
1474 1486 4.014406 TCCAGCAAGTACTCTGTCGAATA 58.986 43.478 9.92 0.00 0.00 1.75
1553 1565 2.586648 AAATCAGAGTCCCACCCAAC 57.413 50.000 0.00 0.00 0.00 3.77
1824 1884 6.553476 AGCTTTAAACATTGTTTTCTAGGGGT 59.447 34.615 19.15 7.77 0.00 4.95
1844 1904 3.997021 GGTGAAGATGGCGAAGTATATGG 59.003 47.826 0.00 0.00 0.00 2.74
1848 1908 5.303333 TGAAGATGGCGAAGTATATGGTGTA 59.697 40.000 0.00 0.00 0.00 2.90
1875 1935 2.359354 TGTTGGGGGCAACGATCG 60.359 61.111 14.88 14.88 37.86 3.69
1914 1976 3.385384 CAGAGGCTCAGGGTGCGA 61.385 66.667 18.26 0.00 0.00 5.10
1937 1999 1.480954 CTTCTCCGGTGCTTAAGGCTA 59.519 52.381 0.00 0.00 42.39 3.93
1972 2034 2.104963 GAGGGGAATCGCTTAGGATTGT 59.895 50.000 0.00 0.00 36.79 2.71
2028 2093 1.965935 TGTGTTCTGCTAGCTTGCAA 58.034 45.000 22.83 11.69 42.83 4.08
2035 2100 5.473162 TGTTCTGCTAGCTTGCAAATCTTAA 59.527 36.000 22.83 8.47 42.83 1.85
2140 2209 4.753107 CAGTTAAACCTTGCTTTCCGTCTA 59.247 41.667 0.00 0.00 0.00 2.59
2164 2233 3.003113 GCTACTCTCCGGTTGCCGT 62.003 63.158 0.00 0.00 46.80 5.68
2195 2264 6.200097 GCTGTTAACAGTTTTATGTTGGTTGG 59.800 38.462 30.90 6.36 45.45 3.77
2201 2271 5.115480 CAGTTTTATGTTGGTTGGCTTTGT 58.885 37.500 0.00 0.00 0.00 2.83
2269 2341 3.430333 AAAAACACATGGTTGGACGAC 57.570 42.857 0.00 0.00 40.35 4.34
2270 2342 2.341846 AAACACATGGTTGGACGACT 57.658 45.000 0.00 0.00 40.35 4.18
2271 2343 1.878953 AACACATGGTTGGACGACTC 58.121 50.000 0.00 0.00 38.60 3.36
2272 2344 0.319555 ACACATGGTTGGACGACTCG 60.320 55.000 0.00 0.00 0.00 4.18
2273 2345 0.319555 CACATGGTTGGACGACTCGT 60.320 55.000 3.08 3.08 45.10 4.18
2274 2346 0.319555 ACATGGTTGGACGACTCGTG 60.320 55.000 9.27 0.00 41.37 4.35
2275 2347 0.038618 CATGGTTGGACGACTCGTGA 60.039 55.000 9.27 0.00 41.37 4.35
2276 2348 0.038526 ATGGTTGGACGACTCGTGAC 60.039 55.000 9.27 4.96 41.37 3.67
2277 2349 1.372623 GGTTGGACGACTCGTGACC 60.373 63.158 9.27 10.23 41.37 4.02
2278 2350 1.372623 GTTGGACGACTCGTGACCC 60.373 63.158 9.27 4.83 41.37 4.46
2279 2351 2.911484 TTGGACGACTCGTGACCCG 61.911 63.158 9.27 0.00 41.37 5.28
2280 2352 3.052082 GGACGACTCGTGACCCGA 61.052 66.667 9.27 0.00 41.37 5.14
2281 2353 2.620112 GGACGACTCGTGACCCGAA 61.620 63.158 9.27 0.00 46.75 4.30
2282 2354 1.505353 GACGACTCGTGACCCGAAT 59.495 57.895 9.27 0.00 46.75 3.34
2283 2355 0.109412 GACGACTCGTGACCCGAATT 60.109 55.000 9.27 0.00 46.75 2.17
2284 2356 0.316204 ACGACTCGTGACCCGAATTT 59.684 50.000 2.53 0.00 46.75 1.82
2285 2357 1.269936 ACGACTCGTGACCCGAATTTT 60.270 47.619 2.53 0.00 46.75 1.82
2286 2358 2.030007 ACGACTCGTGACCCGAATTTTA 60.030 45.455 2.53 0.00 46.75 1.52
2287 2359 2.988493 CGACTCGTGACCCGAATTTTAA 59.012 45.455 0.00 0.00 46.75 1.52
2288 2360 3.060363 CGACTCGTGACCCGAATTTTAAG 59.940 47.826 0.00 0.00 46.75 1.85
2289 2361 3.332034 ACTCGTGACCCGAATTTTAAGG 58.668 45.455 0.00 0.00 46.75 2.69
2290 2362 3.007182 ACTCGTGACCCGAATTTTAAGGA 59.993 43.478 0.00 0.00 46.75 3.36
2291 2363 3.998341 CTCGTGACCCGAATTTTAAGGAA 59.002 43.478 0.00 0.00 46.75 3.36
2292 2364 4.387598 TCGTGACCCGAATTTTAAGGAAA 58.612 39.130 0.00 0.00 44.03 3.13
2293 2365 5.005094 TCGTGACCCGAATTTTAAGGAAAT 58.995 37.500 0.00 0.00 44.03 2.17
2294 2366 5.122711 TCGTGACCCGAATTTTAAGGAAATC 59.877 40.000 0.00 0.00 44.03 2.17
2295 2367 5.106475 CGTGACCCGAATTTTAAGGAAATCA 60.106 40.000 0.00 0.00 36.96 2.57
2296 2368 6.322491 GTGACCCGAATTTTAAGGAAATCAG 58.678 40.000 0.00 0.00 36.96 2.90
2297 2369 6.007703 TGACCCGAATTTTAAGGAAATCAGT 58.992 36.000 0.00 0.00 36.96 3.41
2298 2370 6.150474 TGACCCGAATTTTAAGGAAATCAGTC 59.850 38.462 0.00 0.00 36.96 3.51
2299 2371 6.246163 ACCCGAATTTTAAGGAAATCAGTCT 58.754 36.000 0.00 0.00 36.96 3.24
2300 2372 6.151144 ACCCGAATTTTAAGGAAATCAGTCTG 59.849 38.462 0.00 0.00 36.96 3.51
2301 2373 6.374333 CCCGAATTTTAAGGAAATCAGTCTGA 59.626 38.462 4.68 4.68 36.96 3.27
2302 2374 7.067494 CCCGAATTTTAAGGAAATCAGTCTGAT 59.933 37.037 9.68 9.68 39.09 2.90
2303 2375 7.912250 CCGAATTTTAAGGAAATCAGTCTGATG 59.088 37.037 16.15 0.00 37.15 3.07
2304 2376 8.668353 CGAATTTTAAGGAAATCAGTCTGATGA 58.332 33.333 16.15 0.00 37.15 2.92
2305 2377 9.780413 GAATTTTAAGGAAATCAGTCTGATGAC 57.220 33.333 16.15 12.30 37.15 3.06
2306 2378 8.868522 ATTTTAAGGAAATCAGTCTGATGACA 57.131 30.769 16.15 0.00 38.29 3.58
2307 2379 7.672983 TTTAAGGAAATCAGTCTGATGACAC 57.327 36.000 16.15 7.39 45.20 3.67
2308 2380 4.213564 AGGAAATCAGTCTGATGACACC 57.786 45.455 16.15 15.18 45.20 4.16
2309 2381 3.843027 AGGAAATCAGTCTGATGACACCT 59.157 43.478 16.15 16.84 45.20 4.00
2310 2382 5.026121 AGGAAATCAGTCTGATGACACCTA 58.974 41.667 16.15 0.00 45.20 3.08
2311 2383 5.664908 AGGAAATCAGTCTGATGACACCTAT 59.335 40.000 16.15 0.00 45.20 2.57
2312 2384 6.157645 AGGAAATCAGTCTGATGACACCTATT 59.842 38.462 16.15 4.15 45.20 1.73
2313 2385 7.345653 AGGAAATCAGTCTGATGACACCTATTA 59.654 37.037 16.15 0.00 45.20 0.98
2314 2386 7.655328 GGAAATCAGTCTGATGACACCTATTAG 59.345 40.741 16.15 0.00 45.20 1.73
2315 2387 5.521906 TCAGTCTGATGACACCTATTAGC 57.478 43.478 0.00 0.00 45.20 3.09
2316 2388 5.204292 TCAGTCTGATGACACCTATTAGCT 58.796 41.667 0.00 0.00 45.20 3.32
2317 2389 5.068329 TCAGTCTGATGACACCTATTAGCTG 59.932 44.000 0.00 0.00 45.20 4.24
2318 2390 4.054671 GTCTGATGACACCTATTAGCTGC 58.945 47.826 0.00 0.00 42.48 5.25
2319 2391 3.070159 TCTGATGACACCTATTAGCTGCC 59.930 47.826 0.00 0.00 0.00 4.85
2320 2392 3.041211 TGATGACACCTATTAGCTGCCT 58.959 45.455 0.00 0.00 0.00 4.75
2321 2393 3.455910 TGATGACACCTATTAGCTGCCTT 59.544 43.478 0.00 0.00 0.00 4.35
2322 2394 4.080356 TGATGACACCTATTAGCTGCCTTT 60.080 41.667 0.00 0.00 0.00 3.11
2323 2395 5.130311 TGATGACACCTATTAGCTGCCTTTA 59.870 40.000 0.00 0.00 0.00 1.85
2324 2396 5.630415 TGACACCTATTAGCTGCCTTTAT 57.370 39.130 0.00 0.00 0.00 1.40
2325 2397 6.001449 TGACACCTATTAGCTGCCTTTATT 57.999 37.500 0.00 0.00 0.00 1.40
2326 2398 6.423182 TGACACCTATTAGCTGCCTTTATTT 58.577 36.000 0.00 0.00 0.00 1.40
2327 2399 6.889722 TGACACCTATTAGCTGCCTTTATTTT 59.110 34.615 0.00 0.00 0.00 1.82
2328 2400 7.067008 TGACACCTATTAGCTGCCTTTATTTTC 59.933 37.037 0.00 0.00 0.00 2.29
2329 2401 6.038271 ACACCTATTAGCTGCCTTTATTTTCG 59.962 38.462 0.00 0.00 0.00 3.46
2330 2402 5.531287 ACCTATTAGCTGCCTTTATTTTCGG 59.469 40.000 0.00 0.00 0.00 4.30
2331 2403 5.531287 CCTATTAGCTGCCTTTATTTTCGGT 59.469 40.000 0.00 0.00 0.00 4.69
2332 2404 6.708949 CCTATTAGCTGCCTTTATTTTCGGTA 59.291 38.462 0.00 0.00 0.00 4.02
2333 2405 7.227910 CCTATTAGCTGCCTTTATTTTCGGTAA 59.772 37.037 0.00 0.00 0.00 2.85
2334 2406 6.821031 TTAGCTGCCTTTATTTTCGGTAAA 57.179 33.333 0.00 0.00 0.00 2.01
2335 2407 5.715434 AGCTGCCTTTATTTTCGGTAAAA 57.285 34.783 0.00 0.00 38.87 1.52
2336 2408 5.709966 AGCTGCCTTTATTTTCGGTAAAAG 58.290 37.500 0.00 0.00 37.97 2.27
2337 2409 4.326278 GCTGCCTTTATTTTCGGTAAAAGC 59.674 41.667 0.00 0.00 37.97 3.51
2338 2410 5.709966 CTGCCTTTATTTTCGGTAAAAGCT 58.290 37.500 0.00 0.00 37.97 3.74
2339 2411 6.091718 TGCCTTTATTTTCGGTAAAAGCTT 57.908 33.333 0.00 0.00 37.97 3.74
2340 2412 6.517605 TGCCTTTATTTTCGGTAAAAGCTTT 58.482 32.000 5.69 5.69 37.97 3.51
2341 2413 6.422400 TGCCTTTATTTTCGGTAAAAGCTTTG 59.578 34.615 13.54 0.00 37.97 2.77
2342 2414 6.422701 GCCTTTATTTTCGGTAAAAGCTTTGT 59.577 34.615 13.54 5.83 37.97 2.83
2343 2415 7.568679 GCCTTTATTTTCGGTAAAAGCTTTGTG 60.569 37.037 13.54 3.28 37.97 3.33
2344 2416 7.095816 CCTTTATTTTCGGTAAAAGCTTTGTGG 60.096 37.037 13.54 3.07 37.97 4.17
2345 2417 4.722361 TTTTCGGTAAAAGCTTTGTGGT 57.278 36.364 13.54 0.00 31.04 4.16
2346 2418 3.974871 TTCGGTAAAAGCTTTGTGGTC 57.025 42.857 13.54 2.03 0.00 4.02
2347 2419 2.920524 TCGGTAAAAGCTTTGTGGTCA 58.079 42.857 13.54 0.00 0.00 4.02
2348 2420 2.614983 TCGGTAAAAGCTTTGTGGTCAC 59.385 45.455 13.54 4.40 0.00 3.67
2349 2421 2.287368 CGGTAAAAGCTTTGTGGTCACC 60.287 50.000 13.54 11.74 0.00 4.02
2350 2422 2.035449 GGTAAAAGCTTTGTGGTCACCC 59.965 50.000 13.54 0.73 0.00 4.61
2351 2423 0.744281 AAAAGCTTTGTGGTCACCCG 59.256 50.000 13.54 0.00 0.00 5.28
2352 2424 0.106918 AAAGCTTTGTGGTCACCCGA 60.107 50.000 11.80 0.00 0.00 5.14
2353 2425 0.818040 AAGCTTTGTGGTCACCCGAC 60.818 55.000 0.00 0.00 41.80 4.79
2354 2426 1.525077 GCTTTGTGGTCACCCGACA 60.525 57.895 0.00 0.00 44.54 4.35
2355 2427 1.507141 GCTTTGTGGTCACCCGACAG 61.507 60.000 0.00 0.00 44.54 3.51
2356 2428 0.105964 CTTTGTGGTCACCCGACAGA 59.894 55.000 0.00 0.00 44.54 3.41
2357 2429 0.762418 TTTGTGGTCACCCGACAGAT 59.238 50.000 0.00 0.00 44.54 2.90
2358 2430 0.320374 TTGTGGTCACCCGACAGATC 59.680 55.000 0.00 0.00 44.54 2.75
2359 2431 0.541998 TGTGGTCACCCGACAGATCT 60.542 55.000 0.00 0.00 44.54 2.75
2360 2432 0.608640 GTGGTCACCCGACAGATCTT 59.391 55.000 0.00 0.00 44.54 2.40
2361 2433 1.002087 GTGGTCACCCGACAGATCTTT 59.998 52.381 0.00 0.00 44.54 2.52
2362 2434 1.275291 TGGTCACCCGACAGATCTTTC 59.725 52.381 0.00 0.00 44.54 2.62
2363 2435 1.275291 GGTCACCCGACAGATCTTTCA 59.725 52.381 9.47 0.00 44.54 2.69
2364 2436 2.093447 GGTCACCCGACAGATCTTTCAT 60.093 50.000 9.47 0.00 44.54 2.57
2365 2437 3.190874 GTCACCCGACAGATCTTTCATC 58.809 50.000 9.47 0.00 42.13 2.92
2366 2438 2.159240 TCACCCGACAGATCTTTCATCG 60.159 50.000 9.47 8.63 34.35 3.84
2367 2439 1.212616 CCCGACAGATCTTTCATCGC 58.787 55.000 9.47 0.00 33.66 4.58
2368 2440 1.212616 CCGACAGATCTTTCATCGCC 58.787 55.000 9.47 0.00 33.66 5.54
2369 2441 1.212616 CGACAGATCTTTCATCGCCC 58.787 55.000 9.47 0.00 0.00 6.13
2370 2442 1.471501 CGACAGATCTTTCATCGCCCA 60.472 52.381 9.47 0.00 0.00 5.36
2371 2443 2.804572 CGACAGATCTTTCATCGCCCAT 60.805 50.000 9.47 0.00 0.00 4.00
2372 2444 2.805099 GACAGATCTTTCATCGCCCATC 59.195 50.000 3.94 0.00 0.00 3.51
2373 2445 2.149578 CAGATCTTTCATCGCCCATCC 58.850 52.381 0.00 0.00 0.00 3.51
2374 2446 1.151668 GATCTTTCATCGCCCATCCG 58.848 55.000 0.00 0.00 0.00 4.18
2375 2447 0.886490 ATCTTTCATCGCCCATCCGC 60.886 55.000 0.00 0.00 0.00 5.54
2376 2448 2.515991 TTTCATCGCCCATCCGCC 60.516 61.111 0.00 0.00 0.00 6.13
2377 2449 2.947938 CTTTCATCGCCCATCCGCCT 62.948 60.000 0.00 0.00 0.00 5.52
2378 2450 2.940890 TTTCATCGCCCATCCGCCTC 62.941 60.000 0.00 0.00 0.00 4.70
2379 2451 4.996434 CATCGCCCATCCGCCTCC 62.996 72.222 0.00 0.00 0.00 4.30
2383 2455 4.554036 GCCCATCCGCCTCCTCAC 62.554 72.222 0.00 0.00 0.00 3.51
2384 2456 4.227134 CCCATCCGCCTCCTCACG 62.227 72.222 0.00 0.00 0.00 4.35
2385 2457 4.899239 CCATCCGCCTCCTCACGC 62.899 72.222 0.00 0.00 0.00 5.34
2386 2458 3.842923 CATCCGCCTCCTCACGCT 61.843 66.667 0.00 0.00 0.00 5.07
2387 2459 3.077556 ATCCGCCTCCTCACGCTT 61.078 61.111 0.00 0.00 0.00 4.68
2388 2460 3.376935 ATCCGCCTCCTCACGCTTG 62.377 63.158 0.00 0.00 0.00 4.01
2391 2463 4.742201 GCCTCCTCACGCTTGCGA 62.742 66.667 22.03 0.00 0.00 5.10
2392 2464 2.811317 CCTCCTCACGCTTGCGAC 60.811 66.667 22.03 0.00 0.00 5.19
2393 2465 3.175240 CTCCTCACGCTTGCGACG 61.175 66.667 22.03 11.78 0.00 5.12
2402 2474 3.470567 CTTGCGACGCGTGTCCTC 61.471 66.667 20.70 14.94 42.37 3.71
2415 2487 2.680352 TCCTCGTGGGACCAGCTC 60.680 66.667 3.23 0.00 39.58 4.09
2416 2488 4.135153 CCTCGTGGGACCAGCTCG 62.135 72.222 0.00 0.00 37.23 5.03
2417 2489 3.374402 CTCGTGGGACCAGCTCGT 61.374 66.667 0.00 0.00 0.00 4.18
2418 2490 2.915659 TCGTGGGACCAGCTCGTT 60.916 61.111 0.00 0.00 0.00 3.85
2419 2491 2.432628 CGTGGGACCAGCTCGTTC 60.433 66.667 0.00 0.00 0.00 3.95
2420 2492 2.932234 CGTGGGACCAGCTCGTTCT 61.932 63.158 0.00 0.00 0.00 3.01
2421 2493 1.371558 GTGGGACCAGCTCGTTCTT 59.628 57.895 0.00 0.00 0.00 2.52
2422 2494 0.606604 GTGGGACCAGCTCGTTCTTA 59.393 55.000 0.00 0.00 0.00 2.10
2423 2495 1.207329 GTGGGACCAGCTCGTTCTTAT 59.793 52.381 0.00 0.00 0.00 1.73
2424 2496 1.480954 TGGGACCAGCTCGTTCTTATC 59.519 52.381 0.00 0.00 0.00 1.75
2425 2497 1.202545 GGGACCAGCTCGTTCTTATCC 60.203 57.143 0.00 0.00 0.00 2.59
2426 2498 1.757699 GGACCAGCTCGTTCTTATCCT 59.242 52.381 0.00 0.00 0.00 3.24
2427 2499 2.223852 GGACCAGCTCGTTCTTATCCTC 60.224 54.545 0.00 0.00 0.00 3.71
2428 2500 2.427453 GACCAGCTCGTTCTTATCCTCA 59.573 50.000 0.00 0.00 0.00 3.86
2429 2501 2.166664 ACCAGCTCGTTCTTATCCTCAC 59.833 50.000 0.00 0.00 0.00 3.51
2430 2502 2.455032 CAGCTCGTTCTTATCCTCACG 58.545 52.381 0.00 0.00 0.00 4.35
2431 2503 1.201343 GCTCGTTCTTATCCTCACGC 58.799 55.000 0.00 0.00 32.59 5.34
2432 2504 1.841450 CTCGTTCTTATCCTCACGCC 58.159 55.000 0.00 0.00 32.59 5.68
2433 2505 1.134367 CTCGTTCTTATCCTCACGCCA 59.866 52.381 0.00 0.00 32.59 5.69
2434 2506 1.546923 TCGTTCTTATCCTCACGCCAA 59.453 47.619 0.00 0.00 32.59 4.52
2435 2507 1.659098 CGTTCTTATCCTCACGCCAAC 59.341 52.381 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 1.536418 CCCGGATGAGATGGGGCTA 60.536 63.158 0.73 0.00 39.39 3.93
60 61 2.851102 CCCGGATGAGATGGGGCT 60.851 66.667 0.73 0.00 39.39 5.19
61 62 2.849162 TCCCGGATGAGATGGGGC 60.849 66.667 0.73 0.00 43.50 5.80
65 66 1.123077 TTGGAGTCCCGGATGAGATG 58.877 55.000 0.73 0.00 34.29 2.90
91 92 6.876789 TGAGTTTATGTGTTTGATGTACCGAT 59.123 34.615 0.00 0.00 0.00 4.18
133 135 0.793861 GTCCGCATGCTTAACGTTCA 59.206 50.000 17.13 0.00 0.00 3.18
307 309 4.694339 GAATCTCGGGCAAGTAACATACT 58.306 43.478 0.00 0.00 41.73 2.12
390 392 6.658816 AGTTAGTTGTGGAATGATGCATTACA 59.341 34.615 0.00 1.06 41.74 2.41
433 435 4.486125 TGCACATCACTATAAGCCTTGA 57.514 40.909 0.00 0.00 0.00 3.02
620 622 5.221722 TGACTATGAGATTATGCAACTCCCC 60.222 44.000 0.00 0.00 0.00 4.81
962 973 8.909423 AAGGTTGGGAATGAAGGAAATATTAA 57.091 30.769 0.00 0.00 0.00 1.40
963 974 9.640952 CTAAGGTTGGGAATGAAGGAAATATTA 57.359 33.333 0.00 0.00 0.00 0.98
964 975 8.343787 TCTAAGGTTGGGAATGAAGGAAATATT 58.656 33.333 0.00 0.00 0.00 1.28
1004 1015 6.613679 TCTTTTTCCCCATAAGGACAAAAAGT 59.386 34.615 20.75 0.00 44.12 2.66
1006 1017 7.625498 ATCTTTTTCCCCATAAGGACAAAAA 57.375 32.000 5.96 5.96 35.66 1.94
1012 1023 8.113114 TCATAGAATCTTTTTCCCCATAAGGA 57.887 34.615 0.00 0.00 38.24 3.36
1016 1027 8.501904 TGTCATCATAGAATCTTTTTCCCCATA 58.498 33.333 0.00 0.00 0.00 2.74
1062 1073 7.425224 AGTCTTATACTTGTAGGTCAGCATT 57.575 36.000 0.00 0.00 33.35 3.56
1265 1276 5.584649 TGCTGTTGACAAATAGTATACAGGC 59.415 40.000 5.50 4.42 39.91 4.85
1425 1437 1.577736 AGCATCCAGACAGGCTAGTT 58.422 50.000 0.00 0.00 37.29 2.24
1553 1565 7.052873 AGATCAACTAGAGGAAAACATGGATG 58.947 38.462 0.00 0.00 0.00 3.51
1623 1635 4.592942 ACACAAGACATGCCATCTACATT 58.407 39.130 0.00 0.00 0.00 2.71
1818 1878 0.830648 CTTCGCCATCTTCACCCCTA 59.169 55.000 0.00 0.00 0.00 3.53
1824 1884 4.100963 ACACCATATACTTCGCCATCTTCA 59.899 41.667 0.00 0.00 0.00 3.02
1844 1904 2.560981 CCCCAACAGGTCCAAAATACAC 59.439 50.000 0.00 0.00 0.00 2.90
1848 1908 0.835971 GCCCCCAACAGGTCCAAAAT 60.836 55.000 0.00 0.00 0.00 1.82
1875 1935 4.405358 TGAACATAGGATTTTCCATTGCCC 59.595 41.667 0.00 0.00 39.61 5.36
1914 1976 2.681097 GCCTTAAGCACCGGAGAAGAAT 60.681 50.000 9.46 0.00 42.97 2.40
1937 1999 1.562672 CCCCTCTTCGGTGGTCCAAT 61.563 60.000 0.00 0.00 0.00 3.16
1960 2022 0.512952 GCGCCATACAATCCTAAGCG 59.487 55.000 0.00 0.00 44.54 4.68
2035 2100 7.014230 TGCCAGCTTACTTTTTAAGATCAAAGT 59.986 33.333 12.09 12.09 43.91 2.66
2140 2209 0.978146 AACCGGAGAGTAGCTGCCAT 60.978 55.000 9.46 0.00 0.00 4.40
2195 2264 9.076596 CAACTTTATATAAAGCCAAGACAAAGC 57.923 33.333 27.71 0.00 44.92 3.51
2201 2271 6.605594 CCACCCAACTTTATATAAAGCCAAGA 59.394 38.462 27.71 0.00 44.92 3.02
2254 2326 0.319555 ACGAGTCGTCCAACCATGTG 60.320 55.000 13.56 0.00 33.69 3.21
2255 2327 0.319555 CACGAGTCGTCCAACCATGT 60.320 55.000 16.86 0.00 38.32 3.21
2256 2328 0.038618 TCACGAGTCGTCCAACCATG 60.039 55.000 16.86 1.89 38.32 3.66
2257 2329 0.038526 GTCACGAGTCGTCCAACCAT 60.039 55.000 16.86 0.00 38.32 3.55
2258 2330 1.361271 GTCACGAGTCGTCCAACCA 59.639 57.895 16.86 0.00 38.32 3.67
2259 2331 1.372623 GGTCACGAGTCGTCCAACC 60.373 63.158 16.86 18.71 38.32 3.77
2260 2332 1.372623 GGGTCACGAGTCGTCCAAC 60.373 63.158 16.86 13.79 38.32 3.77
2261 2333 3.045142 GGGTCACGAGTCGTCCAA 58.955 61.111 16.86 1.13 38.32 3.53
2271 2343 4.752661 TTTCCTTAAAATTCGGGTCACG 57.247 40.909 0.00 0.00 46.11 4.35
2272 2344 6.072119 ACTGATTTCCTTAAAATTCGGGTCAC 60.072 38.462 0.00 0.00 37.70 3.67
2273 2345 6.007703 ACTGATTTCCTTAAAATTCGGGTCA 58.992 36.000 0.00 0.00 37.70 4.02
2274 2346 6.374613 AGACTGATTTCCTTAAAATTCGGGTC 59.625 38.462 0.00 0.00 37.70 4.46
2275 2347 6.151144 CAGACTGATTTCCTTAAAATTCGGGT 59.849 38.462 0.00 0.00 37.70 5.28
2276 2348 6.374333 TCAGACTGATTTCCTTAAAATTCGGG 59.626 38.462 0.00 0.00 37.70 5.14
2277 2349 7.377766 TCAGACTGATTTCCTTAAAATTCGG 57.622 36.000 0.00 0.00 37.70 4.30
2278 2350 8.668353 TCATCAGACTGATTTCCTTAAAATTCG 58.332 33.333 15.50 0.00 37.70 3.34
2279 2351 9.780413 GTCATCAGACTGATTTCCTTAAAATTC 57.220 33.333 15.50 0.00 41.64 2.17
2280 2352 9.300681 TGTCATCAGACTGATTTCCTTAAAATT 57.699 29.630 15.50 0.00 45.20 1.82
2281 2353 8.734386 GTGTCATCAGACTGATTTCCTTAAAAT 58.266 33.333 15.50 0.00 45.20 1.82
2282 2354 7.174946 GGTGTCATCAGACTGATTTCCTTAAAA 59.825 37.037 15.50 0.00 45.20 1.52
2283 2355 6.655003 GGTGTCATCAGACTGATTTCCTTAAA 59.345 38.462 15.50 0.00 45.20 1.52
2284 2356 6.013379 AGGTGTCATCAGACTGATTTCCTTAA 60.013 38.462 15.50 0.00 45.20 1.85
2285 2357 5.485353 AGGTGTCATCAGACTGATTTCCTTA 59.515 40.000 15.50 0.00 45.20 2.69
2286 2358 4.288105 AGGTGTCATCAGACTGATTTCCTT 59.712 41.667 15.50 0.00 45.20 3.36
2287 2359 3.843027 AGGTGTCATCAGACTGATTTCCT 59.157 43.478 15.50 15.65 45.20 3.36
2288 2360 4.213564 AGGTGTCATCAGACTGATTTCC 57.786 45.455 15.50 13.93 45.20 3.13
2289 2361 7.170658 GCTAATAGGTGTCATCAGACTGATTTC 59.829 40.741 15.50 11.48 45.20 2.17
2290 2362 6.989169 GCTAATAGGTGTCATCAGACTGATTT 59.011 38.462 15.50 7.48 45.20 2.17
2291 2363 6.326064 AGCTAATAGGTGTCATCAGACTGATT 59.674 38.462 15.50 2.91 45.20 2.57
2292 2364 5.837979 AGCTAATAGGTGTCATCAGACTGAT 59.162 40.000 12.37 12.37 45.20 2.90
2293 2365 5.068329 CAGCTAATAGGTGTCATCAGACTGA 59.932 44.000 7.80 7.80 45.20 3.41
2294 2366 5.288015 CAGCTAATAGGTGTCATCAGACTG 58.712 45.833 11.03 0.00 45.20 3.51
2295 2367 4.202202 GCAGCTAATAGGTGTCATCAGACT 60.202 45.833 19.06 0.00 44.96 3.24
2296 2368 4.054671 GCAGCTAATAGGTGTCATCAGAC 58.945 47.826 19.06 0.00 44.96 3.51
2297 2369 3.070159 GGCAGCTAATAGGTGTCATCAGA 59.930 47.826 17.90 0.00 46.62 3.27
2298 2370 3.397482 GGCAGCTAATAGGTGTCATCAG 58.603 50.000 17.90 0.00 46.62 2.90
2299 2371 3.475566 GGCAGCTAATAGGTGTCATCA 57.524 47.619 17.90 0.00 46.62 3.07
2304 2376 6.038271 CGAAAATAAAGGCAGCTAATAGGTGT 59.962 38.462 19.06 3.83 44.96 4.16
2305 2377 6.430451 CGAAAATAAAGGCAGCTAATAGGTG 58.570 40.000 14.54 14.54 45.86 4.00
2306 2378 5.531287 CCGAAAATAAAGGCAGCTAATAGGT 59.469 40.000 0.00 0.00 0.00 3.08
2307 2379 5.531287 ACCGAAAATAAAGGCAGCTAATAGG 59.469 40.000 0.00 0.00 0.00 2.57
2308 2380 6.619801 ACCGAAAATAAAGGCAGCTAATAG 57.380 37.500 0.00 0.00 0.00 1.73
2309 2381 8.508883 TTTACCGAAAATAAAGGCAGCTAATA 57.491 30.769 0.00 0.00 0.00 0.98
2310 2382 7.399245 TTTACCGAAAATAAAGGCAGCTAAT 57.601 32.000 0.00 0.00 0.00 1.73
2311 2383 6.821031 TTTACCGAAAATAAAGGCAGCTAA 57.179 33.333 0.00 0.00 0.00 3.09
2312 2384 6.624204 GCTTTTACCGAAAATAAAGGCAGCTA 60.624 38.462 6.70 0.00 41.66 3.32
2313 2385 5.709966 CTTTTACCGAAAATAAAGGCAGCT 58.290 37.500 0.00 0.00 34.08 4.24
2314 2386 4.326278 GCTTTTACCGAAAATAAAGGCAGC 59.674 41.667 6.70 0.00 41.66 5.25
2315 2387 5.709966 AGCTTTTACCGAAAATAAAGGCAG 58.290 37.500 12.30 0.00 43.41 4.85
2316 2388 5.715434 AGCTTTTACCGAAAATAAAGGCA 57.285 34.783 12.30 0.00 43.41 4.75
2317 2389 6.422701 ACAAAGCTTTTACCGAAAATAAAGGC 59.577 34.615 9.53 4.06 42.10 4.35
2318 2390 7.095816 CCACAAAGCTTTTACCGAAAATAAAGG 60.096 37.037 9.53 0.00 34.08 3.11
2319 2391 7.436970 ACCACAAAGCTTTTACCGAAAATAAAG 59.563 33.333 9.53 0.00 34.08 1.85
2320 2392 7.266400 ACCACAAAGCTTTTACCGAAAATAAA 58.734 30.769 9.53 0.00 34.08 1.40
2321 2393 6.807789 ACCACAAAGCTTTTACCGAAAATAA 58.192 32.000 9.53 0.00 34.08 1.40
2322 2394 6.039493 TGACCACAAAGCTTTTACCGAAAATA 59.961 34.615 9.53 0.00 34.08 1.40
2323 2395 5.163499 TGACCACAAAGCTTTTACCGAAAAT 60.163 36.000 9.53 0.00 34.08 1.82
2324 2396 4.158025 TGACCACAAAGCTTTTACCGAAAA 59.842 37.500 9.53 0.00 33.48 2.29
2325 2397 3.695060 TGACCACAAAGCTTTTACCGAAA 59.305 39.130 9.53 0.00 0.00 3.46
2326 2398 3.065648 GTGACCACAAAGCTTTTACCGAA 59.934 43.478 9.53 0.00 0.00 4.30
2327 2399 2.614983 GTGACCACAAAGCTTTTACCGA 59.385 45.455 9.53 0.00 0.00 4.69
2328 2400 2.287368 GGTGACCACAAAGCTTTTACCG 60.287 50.000 9.53 0.33 0.00 4.02
2329 2401 3.364889 GGTGACCACAAAGCTTTTACC 57.635 47.619 9.53 7.69 0.00 2.85
2344 2416 2.743636 TGAAAGATCTGTCGGGTGAC 57.256 50.000 8.41 0.00 45.71 3.67
2345 2417 2.159240 CGATGAAAGATCTGTCGGGTGA 60.159 50.000 8.41 0.00 33.63 4.02
2346 2418 2.196749 CGATGAAAGATCTGTCGGGTG 58.803 52.381 8.41 0.00 33.63 4.61
2347 2419 1.471676 GCGATGAAAGATCTGTCGGGT 60.472 52.381 8.41 0.00 35.99 5.28
2348 2420 1.212616 GCGATGAAAGATCTGTCGGG 58.787 55.000 8.41 1.39 35.99 5.14
2349 2421 1.212616 GGCGATGAAAGATCTGTCGG 58.787 55.000 8.41 1.73 35.99 4.79
2350 2422 1.212616 GGGCGATGAAAGATCTGTCG 58.787 55.000 8.41 11.03 37.41 4.35
2351 2423 2.315925 TGGGCGATGAAAGATCTGTC 57.684 50.000 5.89 5.89 0.00 3.51
2352 2424 2.486191 GGATGGGCGATGAAAGATCTGT 60.486 50.000 0.00 0.00 0.00 3.41
2353 2425 2.149578 GGATGGGCGATGAAAGATCTG 58.850 52.381 0.00 0.00 0.00 2.90
2354 2426 1.270518 CGGATGGGCGATGAAAGATCT 60.271 52.381 0.00 0.00 0.00 2.75
2355 2427 1.151668 CGGATGGGCGATGAAAGATC 58.848 55.000 0.00 0.00 0.00 2.75
2356 2428 0.886490 GCGGATGGGCGATGAAAGAT 60.886 55.000 0.00 0.00 0.00 2.40
2357 2429 1.523711 GCGGATGGGCGATGAAAGA 60.524 57.895 0.00 0.00 0.00 2.52
2358 2430 2.546494 GGCGGATGGGCGATGAAAG 61.546 63.158 0.00 0.00 0.00 2.62
2359 2431 2.515991 GGCGGATGGGCGATGAAA 60.516 61.111 0.00 0.00 0.00 2.69
2366 2438 4.554036 GTGAGGAGGCGGATGGGC 62.554 72.222 0.00 0.00 42.69 5.36
2367 2439 4.227134 CGTGAGGAGGCGGATGGG 62.227 72.222 0.00 0.00 0.00 4.00
2368 2440 4.899239 GCGTGAGGAGGCGGATGG 62.899 72.222 0.00 0.00 0.00 3.51
2369 2441 3.376935 AAGCGTGAGGAGGCGGATG 62.377 63.158 0.00 0.00 38.06 3.51
2370 2442 3.077556 AAGCGTGAGGAGGCGGAT 61.078 61.111 0.00 0.00 38.06 4.18
2371 2443 4.069232 CAAGCGTGAGGAGGCGGA 62.069 66.667 0.00 0.00 38.06 5.54
2374 2446 4.742201 TCGCAAGCGTGAGGAGGC 62.742 66.667 14.57 0.00 40.74 4.70
2375 2447 2.811317 GTCGCAAGCGTGAGGAGG 60.811 66.667 14.57 0.00 40.74 4.30
2376 2448 3.175240 CGTCGCAAGCGTGAGGAG 61.175 66.667 14.57 0.00 39.36 3.69
2385 2457 3.470567 GAGGACACGCGTCGCAAG 61.471 66.667 18.75 11.13 43.61 4.01
2398 2470 2.680352 GAGCTGGTCCCACGAGGA 60.680 66.667 0.00 0.00 44.91 3.71
2399 2471 4.135153 CGAGCTGGTCCCACGAGG 62.135 72.222 0.00 0.00 0.00 4.63
2400 2472 2.820767 GAACGAGCTGGTCCCACGAG 62.821 65.000 0.40 0.00 0.00 4.18
2401 2473 2.915659 AACGAGCTGGTCCCACGA 60.916 61.111 0.40 0.00 0.00 4.35
2402 2474 2.432628 GAACGAGCTGGTCCCACG 60.433 66.667 0.40 0.00 0.00 4.94
2403 2475 0.606604 TAAGAACGAGCTGGTCCCAC 59.393 55.000 0.40 0.00 0.00 4.61
2404 2476 1.480954 GATAAGAACGAGCTGGTCCCA 59.519 52.381 0.40 0.00 0.00 4.37
2405 2477 1.202545 GGATAAGAACGAGCTGGTCCC 60.203 57.143 0.40 0.00 0.00 4.46
2406 2478 1.757699 AGGATAAGAACGAGCTGGTCC 59.242 52.381 0.40 0.00 0.00 4.46
2407 2479 2.427453 TGAGGATAAGAACGAGCTGGTC 59.573 50.000 0.40 0.00 0.00 4.02
2408 2480 2.166664 GTGAGGATAAGAACGAGCTGGT 59.833 50.000 0.00 0.00 0.00 4.00
2409 2481 2.796383 CGTGAGGATAAGAACGAGCTGG 60.796 54.545 0.00 0.00 0.00 4.85
2410 2482 2.455032 CGTGAGGATAAGAACGAGCTG 58.545 52.381 0.00 0.00 0.00 4.24
2411 2483 1.202313 GCGTGAGGATAAGAACGAGCT 60.202 52.381 0.00 0.00 0.00 4.09
2412 2484 1.201343 GCGTGAGGATAAGAACGAGC 58.799 55.000 0.00 0.00 0.00 5.03
2413 2485 1.134367 TGGCGTGAGGATAAGAACGAG 59.866 52.381 0.00 0.00 0.00 4.18
2414 2486 1.179152 TGGCGTGAGGATAAGAACGA 58.821 50.000 0.00 0.00 0.00 3.85
2415 2487 1.659098 GTTGGCGTGAGGATAAGAACG 59.341 52.381 0.00 0.00 0.00 3.95
2416 2488 1.659098 CGTTGGCGTGAGGATAAGAAC 59.341 52.381 0.00 0.00 0.00 3.01
2417 2489 2.004583 CGTTGGCGTGAGGATAAGAA 57.995 50.000 0.00 0.00 0.00 2.52
2418 2490 3.733236 CGTTGGCGTGAGGATAAGA 57.267 52.632 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.