Multiple sequence alignment - TraesCS7A01G161300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G161300 chr7A 100.000 2936 0 0 1 2936 117824468 117821533 0.000000e+00 5422.0
1 TraesCS7A01G161300 chr7A 88.804 652 43 19 2307 2936 450286511 450287154 0.000000e+00 773.0
2 TraesCS7A01G161300 chr7B 86.171 875 55 38 871 1717 72241957 72241121 0.000000e+00 885.0
3 TraesCS7A01G161300 chr7B 91.364 440 23 7 889 1322 72256609 72256179 3.260000e-164 588.0
4 TraesCS7A01G161300 chr7B 86.792 477 22 14 1824 2280 72241083 72240628 7.310000e-136 494.0
5 TraesCS7A01G161300 chr7B 90.423 355 29 2 1392 1741 72256139 72255785 2.060000e-126 462.0
6 TraesCS7A01G161300 chr7B 84.726 347 19 17 481 817 72256989 72256667 1.700000e-82 316.0
7 TraesCS7A01G161300 chr7B 95.413 109 3 2 1820 1927 72255768 72255661 3.890000e-39 172.0
8 TraesCS7A01G161300 chr7B 100.000 33 0 0 871 903 72256655 72256623 8.790000e-06 62.1
9 TraesCS7A01G161300 chr5A 89.602 654 39 18 2306 2936 66096402 66097049 0.000000e+00 804.0
10 TraesCS7A01G161300 chr5A 83.051 177 25 5 255 429 678567695 678567868 3.920000e-34 156.0
11 TraesCS7A01G161300 chr2B 92.394 447 24 4 1 437 756568874 756568428 1.920000e-176 628.0
12 TraesCS7A01G161300 chr6A 91.759 449 26 3 1 439 443412740 443413187 5.380000e-172 614.0
13 TraesCS7A01G161300 chr4B 84.545 660 58 27 2307 2934 45779285 45779932 5.380000e-172 614.0
14 TraesCS7A01G161300 chr4B 91.275 447 29 4 1 437 601780208 601779762 4.190000e-168 601.0
15 TraesCS7A01G161300 chr4B 90.661 439 31 4 1 429 346526820 346527258 2.540000e-160 575.0
16 TraesCS7A01G161300 chr1D 91.723 447 27 4 1 437 348054250 348053804 1.930000e-171 612.0
17 TraesCS7A01G161300 chr5B 91.499 447 28 4 1 437 403111444 403110998 9.000000e-170 606.0
18 TraesCS7A01G161300 chr5B 91.295 448 29 4 1 438 707481117 707481564 1.160000e-168 603.0
19 TraesCS7A01G161300 chr3B 85.691 601 51 22 2356 2934 736000247 736000834 4.190000e-168 601.0
20 TraesCS7A01G161300 chr3B 84.190 506 43 24 2306 2789 146566702 146566212 9.590000e-125 457.0
21 TraesCS7A01G161300 chr4A 91.051 447 30 4 1 437 657206787 657206341 1.950000e-166 595.0
22 TraesCS7A01G161300 chr4A 89.881 168 14 2 278 443 691296219 691296385 2.290000e-51 213.0
23 TraesCS7A01G161300 chr1B 92.067 416 29 3 23 434 114601980 114602395 1.520000e-162 582.0
24 TraesCS7A01G161300 chr1B 83.168 505 40 25 2307 2789 307149931 307150412 1.260000e-113 420.0
25 TraesCS7A01G161300 chr2A 90.423 449 29 8 1 438 118312004 118312449 1.960000e-161 579.0
26 TraesCS7A01G161300 chr2A 87.793 213 15 4 227 429 118312051 118311840 3.780000e-59 239.0
27 TraesCS7A01G161300 chr7D 90.909 396 24 6 1358 1741 112433385 112432990 3.350000e-144 521.0
28 TraesCS7A01G161300 chr7D 82.046 479 23 32 871 1331 112433811 112433378 1.670000e-92 350.0
29 TraesCS7A01G161300 chr7D 81.075 428 27 17 1818 2216 112432978 112432576 2.860000e-75 292.0
30 TraesCS7A01G161300 chr7D 81.870 353 17 20 481 817 112434144 112433823 1.350000e-63 254.0
31 TraesCS7A01G161300 chrUn 86.667 225 17 10 2579 2801 279318374 279318587 1.360000e-58 237.0
32 TraesCS7A01G161300 chrUn 86.667 225 17 10 2579 2801 282740687 282740900 1.360000e-58 237.0
33 TraesCS7A01G161300 chr3A 86.404 228 18 10 2579 2804 750250204 750249988 1.360000e-58 237.0
34 TraesCS7A01G161300 chr5D 80.921 304 46 7 145 438 7255317 7255016 2.280000e-56 230.0
35 TraesCS7A01G161300 chr1A 81.323 257 32 9 186 429 463925920 463925667 8.300000e-46 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G161300 chr7A 117821533 117824468 2935 True 5422.00 5422 100.0000 1 2936 1 chr7A.!!$R1 2935
1 TraesCS7A01G161300 chr7A 450286511 450287154 643 False 773.00 773 88.8040 2307 2936 1 chr7A.!!$F1 629
2 TraesCS7A01G161300 chr7B 72240628 72241957 1329 True 689.50 885 86.4815 871 2280 2 chr7B.!!$R1 1409
3 TraesCS7A01G161300 chr7B 72255661 72256989 1328 True 320.02 588 92.3852 481 1927 5 chr7B.!!$R2 1446
4 TraesCS7A01G161300 chr5A 66096402 66097049 647 False 804.00 804 89.6020 2306 2936 1 chr5A.!!$F1 630
5 TraesCS7A01G161300 chr4B 45779285 45779932 647 False 614.00 614 84.5450 2307 2934 1 chr4B.!!$F1 627
6 TraesCS7A01G161300 chr3B 736000247 736000834 587 False 601.00 601 85.6910 2356 2934 1 chr3B.!!$F1 578
7 TraesCS7A01G161300 chr7D 112432576 112434144 1568 True 354.25 521 83.9750 481 2216 4 chr7D.!!$R1 1735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 209 0.027979 CCGCAACGCCAAGACATATG 59.972 55.0 0.0 0.0 0.0 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 2230 0.179148 CGCCACATCACGCAGTACTA 60.179 55.0 0.0 0.0 41.61 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.998667 GCTCGCGTTTCGGATCAG 59.001 61.111 5.77 0.00 39.05 2.90
18 19 2.517450 GCTCGCGTTTCGGATCAGG 61.517 63.158 5.77 0.00 39.05 3.86
19 20 1.153823 CTCGCGTTTCGGATCAGGT 60.154 57.895 5.77 0.00 39.05 4.00
20 21 1.413767 CTCGCGTTTCGGATCAGGTG 61.414 60.000 5.77 0.00 39.05 4.00
21 22 1.445410 CGCGTTTCGGATCAGGTGA 60.445 57.895 0.00 0.00 33.78 4.02
22 23 1.413767 CGCGTTTCGGATCAGGTGAG 61.414 60.000 0.00 0.00 33.78 3.51
23 24 0.108804 GCGTTTCGGATCAGGTGAGA 60.109 55.000 0.00 0.00 0.00 3.27
24 25 1.671850 GCGTTTCGGATCAGGTGAGAA 60.672 52.381 0.00 0.00 0.00 2.87
25 26 2.683968 CGTTTCGGATCAGGTGAGAAA 58.316 47.619 0.00 0.00 0.00 2.52
26 27 2.412089 CGTTTCGGATCAGGTGAGAAAC 59.588 50.000 10.90 10.90 44.01 2.78
27 28 2.363788 TTCGGATCAGGTGAGAAACG 57.636 50.000 0.00 0.00 0.00 3.60
28 29 0.108804 TCGGATCAGGTGAGAAACGC 60.109 55.000 0.00 0.00 0.00 4.84
45 46 4.337013 CCATAGGCCTTGGCGTTT 57.663 55.556 12.58 1.87 0.00 3.60
46 47 2.106844 CCATAGGCCTTGGCGTTTC 58.893 57.895 12.58 0.00 0.00 2.78
47 48 0.394352 CCATAGGCCTTGGCGTTTCT 60.394 55.000 12.58 3.03 0.00 2.52
48 49 1.463674 CATAGGCCTTGGCGTTTCTT 58.536 50.000 12.58 0.00 0.00 2.52
49 50 1.401905 CATAGGCCTTGGCGTTTCTTC 59.598 52.381 12.58 0.00 0.00 2.87
50 51 0.672401 TAGGCCTTGGCGTTTCTTCG 60.672 55.000 12.58 0.00 0.00 3.79
59 60 2.079049 CGTTTCTTCGCTAGCACCC 58.921 57.895 16.45 0.00 0.00 4.61
60 61 0.669318 CGTTTCTTCGCTAGCACCCA 60.669 55.000 16.45 0.00 0.00 4.51
61 62 1.519408 GTTTCTTCGCTAGCACCCAA 58.481 50.000 16.45 0.00 0.00 4.12
62 63 1.197036 GTTTCTTCGCTAGCACCCAAC 59.803 52.381 16.45 6.77 0.00 3.77
63 64 0.321298 TTCTTCGCTAGCACCCAACC 60.321 55.000 16.45 0.00 0.00 3.77
64 65 1.745489 CTTCGCTAGCACCCAACCC 60.745 63.158 16.45 0.00 0.00 4.11
65 66 2.463589 CTTCGCTAGCACCCAACCCA 62.464 60.000 16.45 0.00 0.00 4.51
66 67 2.741486 TTCGCTAGCACCCAACCCAC 62.741 60.000 16.45 0.00 0.00 4.61
67 68 2.757077 GCTAGCACCCAACCCACT 59.243 61.111 10.63 0.00 0.00 4.00
68 69 1.377333 GCTAGCACCCAACCCACTC 60.377 63.158 10.63 0.00 0.00 3.51
69 70 1.079127 CTAGCACCCAACCCACTCG 60.079 63.158 0.00 0.00 0.00 4.18
70 71 3.248446 TAGCACCCAACCCACTCGC 62.248 63.158 0.00 0.00 0.00 5.03
71 72 4.643387 GCACCCAACCCACTCGCT 62.643 66.667 0.00 0.00 0.00 4.93
72 73 2.669569 CACCCAACCCACTCGCTG 60.670 66.667 0.00 0.00 0.00 5.18
73 74 4.643387 ACCCAACCCACTCGCTGC 62.643 66.667 0.00 0.00 0.00 5.25
75 76 4.335647 CCAACCCACTCGCTGCCT 62.336 66.667 0.00 0.00 0.00 4.75
76 77 2.743928 CAACCCACTCGCTGCCTC 60.744 66.667 0.00 0.00 0.00 4.70
77 78 4.379243 AACCCACTCGCTGCCTCG 62.379 66.667 0.00 0.00 0.00 4.63
79 80 4.803426 CCCACTCGCTGCCTCGTC 62.803 72.222 0.00 0.00 0.00 4.20
80 81 4.056125 CCACTCGCTGCCTCGTCA 62.056 66.667 0.00 0.00 0.00 4.35
81 82 2.505777 CACTCGCTGCCTCGTCAG 60.506 66.667 0.00 0.00 37.15 3.51
82 83 3.753434 ACTCGCTGCCTCGTCAGG 61.753 66.667 0.00 0.00 43.82 3.86
83 84 4.504916 CTCGCTGCCTCGTCAGGG 62.505 72.222 10.88 10.88 45.13 4.45
85 86 4.379243 CGCTGCCTCGTCAGGGTT 62.379 66.667 0.00 0.00 40.75 4.11
86 87 2.032681 GCTGCCTCGTCAGGGTTT 59.967 61.111 0.00 0.00 40.75 3.27
87 88 1.600916 GCTGCCTCGTCAGGGTTTT 60.601 57.895 0.00 0.00 40.75 2.43
88 89 1.578206 GCTGCCTCGTCAGGGTTTTC 61.578 60.000 0.00 0.00 40.75 2.29
89 90 0.955919 CTGCCTCGTCAGGGTTTTCC 60.956 60.000 0.00 0.00 40.75 3.13
91 92 0.673956 GCCTCGTCAGGGTTTTCCTC 60.674 60.000 0.00 0.00 46.12 3.71
92 93 0.036294 CCTCGTCAGGGTTTTCCTCC 60.036 60.000 0.00 0.00 46.12 4.30
93 94 0.977395 CTCGTCAGGGTTTTCCTCCT 59.023 55.000 0.00 0.00 46.12 3.69
94 95 0.974383 TCGTCAGGGTTTTCCTCCTC 59.026 55.000 0.00 0.00 46.12 3.71
95 96 0.685097 CGTCAGGGTTTTCCTCCTCA 59.315 55.000 0.00 0.00 46.12 3.86
96 97 1.338200 CGTCAGGGTTTTCCTCCTCAG 60.338 57.143 0.00 0.00 46.12 3.35
97 98 0.693049 TCAGGGTTTTCCTCCTCAGC 59.307 55.000 0.00 0.00 46.12 4.26
98 99 0.695347 CAGGGTTTTCCTCCTCAGCT 59.305 55.000 0.00 0.00 46.12 4.24
99 100 0.695347 AGGGTTTTCCTCCTCAGCTG 59.305 55.000 7.63 7.63 44.06 4.24
100 101 0.962855 GGGTTTTCCTCCTCAGCTGC 60.963 60.000 9.47 0.00 40.46 5.25
101 102 0.962855 GGTTTTCCTCCTCAGCTGCC 60.963 60.000 9.47 0.00 36.94 4.85
102 103 0.250901 GTTTTCCTCCTCAGCTGCCA 60.251 55.000 9.47 0.00 0.00 4.92
103 104 0.037303 TTTTCCTCCTCAGCTGCCAG 59.963 55.000 9.47 1.54 0.00 4.85
104 105 0.837691 TTTCCTCCTCAGCTGCCAGA 60.838 55.000 9.47 4.39 0.00 3.86
105 106 1.263342 TTCCTCCTCAGCTGCCAGAG 61.263 60.000 9.47 13.88 0.00 3.35
106 107 1.685077 CCTCCTCAGCTGCCAGAGA 60.685 63.158 21.87 9.83 33.74 3.10
107 108 1.516892 CTCCTCAGCTGCCAGAGAC 59.483 63.158 18.02 0.00 33.74 3.36
108 109 2.183811 CCTCAGCTGCCAGAGACG 59.816 66.667 18.02 2.49 33.74 4.18
109 110 2.508887 CTCAGCTGCCAGAGACGC 60.509 66.667 9.47 0.00 33.74 5.19
110 111 4.074526 TCAGCTGCCAGAGACGCC 62.075 66.667 9.47 0.00 0.00 5.68
120 121 4.388499 GAGACGCCGGGCCAGAAA 62.388 66.667 14.55 0.00 0.00 2.52
121 122 4.699522 AGACGCCGGGCCAGAAAC 62.700 66.667 14.55 0.00 0.00 2.78
129 130 4.056125 GGCCAGAAACGCCAAGGC 62.056 66.667 0.00 0.00 46.27 4.35
130 131 2.985847 GCCAGAAACGCCAAGGCT 60.986 61.111 9.73 0.00 42.01 4.58
131 132 1.674322 GCCAGAAACGCCAAGGCTA 60.674 57.895 9.73 0.00 42.01 3.93
132 133 1.648467 GCCAGAAACGCCAAGGCTAG 61.648 60.000 9.73 0.00 42.01 3.42
133 134 1.648467 CCAGAAACGCCAAGGCTAGC 61.648 60.000 6.04 6.04 39.32 3.42
140 141 2.746277 CCAAGGCTAGCGGCGTTT 60.746 61.111 9.37 0.00 45.21 3.60
141 142 2.332654 CCAAGGCTAGCGGCGTTTT 61.333 57.895 9.37 0.00 45.21 2.43
142 143 1.134694 CAAGGCTAGCGGCGTTTTC 59.865 57.895 9.37 0.00 45.21 2.29
143 144 1.302192 AAGGCTAGCGGCGTTTTCA 60.302 52.632 9.37 0.00 45.21 2.69
144 145 1.298859 AAGGCTAGCGGCGTTTTCAG 61.299 55.000 9.37 0.00 45.21 3.02
145 146 2.098489 GCTAGCGGCGTTTTCAGC 59.902 61.111 9.37 4.82 0.00 4.26
156 157 4.483476 GCGTTTTCAGCCTTCTTAGAAA 57.517 40.909 0.00 0.00 0.00 2.52
157 158 4.219802 GCGTTTTCAGCCTTCTTAGAAAC 58.780 43.478 0.00 0.00 30.47 2.78
158 159 4.455124 CGTTTTCAGCCTTCTTAGAAACG 58.545 43.478 0.00 0.00 30.47 3.60
159 160 4.219802 GTTTTCAGCCTTCTTAGAAACGC 58.780 43.478 5.79 5.79 30.47 4.84
160 161 2.094762 TCAGCCTTCTTAGAAACGCC 57.905 50.000 9.27 0.00 0.00 5.68
161 162 1.346395 TCAGCCTTCTTAGAAACGCCA 59.654 47.619 9.27 0.00 0.00 5.69
162 163 2.151202 CAGCCTTCTTAGAAACGCCAA 58.849 47.619 9.27 0.00 0.00 4.52
163 164 2.160417 CAGCCTTCTTAGAAACGCCAAG 59.840 50.000 9.27 0.00 0.00 3.61
164 165 1.468914 GCCTTCTTAGAAACGCCAAGG 59.531 52.381 0.00 0.00 34.62 3.61
165 166 2.779506 CCTTCTTAGAAACGCCAAGGT 58.220 47.619 0.00 0.00 0.00 3.50
166 167 3.867216 GCCTTCTTAGAAACGCCAAGGTA 60.867 47.826 0.00 0.00 34.10 3.08
167 168 4.320870 CCTTCTTAGAAACGCCAAGGTAA 58.679 43.478 0.00 0.00 0.00 2.85
168 169 4.758165 CCTTCTTAGAAACGCCAAGGTAAA 59.242 41.667 0.00 0.00 0.00 2.01
169 170 5.239963 CCTTCTTAGAAACGCCAAGGTAAAA 59.760 40.000 0.00 0.00 0.00 1.52
170 171 6.238814 CCTTCTTAGAAACGCCAAGGTAAAAA 60.239 38.462 0.00 0.00 0.00 1.94
188 189 3.690475 AAAACTACTCGGTAACCAGGG 57.310 47.619 0.00 0.00 0.00 4.45
189 190 0.900421 AACTACTCGGTAACCAGGGC 59.100 55.000 0.00 0.00 0.00 5.19
190 191 0.974525 ACTACTCGGTAACCAGGGCC 60.975 60.000 0.00 0.00 0.00 5.80
191 192 2.012902 CTACTCGGTAACCAGGGCCG 62.013 65.000 11.77 11.77 46.12 6.13
192 193 4.832608 CTCGGTAACCAGGGCCGC 62.833 72.222 12.83 0.00 44.58 6.53
194 195 4.708386 CGGTAACCAGGGCCGCAA 62.708 66.667 0.00 0.00 38.99 4.85
195 196 3.060000 GGTAACCAGGGCCGCAAC 61.060 66.667 0.00 0.00 0.00 4.17
196 197 3.428282 GTAACCAGGGCCGCAACG 61.428 66.667 0.00 0.00 0.00 4.10
205 206 3.737172 GCCGCAACGCCAAGACAT 61.737 61.111 0.00 0.00 0.00 3.06
206 207 2.395360 GCCGCAACGCCAAGACATA 61.395 57.895 0.00 0.00 0.00 2.29
207 208 1.714899 GCCGCAACGCCAAGACATAT 61.715 55.000 0.00 0.00 0.00 1.78
208 209 0.027979 CCGCAACGCCAAGACATATG 59.972 55.000 0.00 0.00 0.00 1.78
209 210 0.027979 CGCAACGCCAAGACATATGG 59.972 55.000 7.80 0.00 41.08 2.74
217 218 3.848272 CCAAGACATATGGCGTTTGTT 57.152 42.857 7.80 0.00 0.00 2.83
218 219 4.173036 CCAAGACATATGGCGTTTGTTT 57.827 40.909 7.80 0.00 0.00 2.83
219 220 4.165779 CCAAGACATATGGCGTTTGTTTC 58.834 43.478 7.80 0.00 0.00 2.78
220 221 4.082787 CCAAGACATATGGCGTTTGTTTCT 60.083 41.667 7.80 0.00 0.00 2.52
221 222 5.460646 CAAGACATATGGCGTTTGTTTCTT 58.539 37.500 7.80 0.94 0.00 2.52
222 223 5.046910 AGACATATGGCGTTTGTTTCTTG 57.953 39.130 7.80 0.00 0.00 3.02
223 224 4.082787 AGACATATGGCGTTTGTTTCTTGG 60.083 41.667 7.80 0.00 0.00 3.61
224 225 3.572255 ACATATGGCGTTTGTTTCTTGGT 59.428 39.130 7.80 0.00 0.00 3.67
225 226 2.793278 ATGGCGTTTGTTTCTTGGTC 57.207 45.000 0.00 0.00 0.00 4.02
226 227 1.464734 TGGCGTTTGTTTCTTGGTCA 58.535 45.000 0.00 0.00 0.00 4.02
227 228 1.403679 TGGCGTTTGTTTCTTGGTCAG 59.596 47.619 0.00 0.00 0.00 3.51
228 229 1.673920 GGCGTTTGTTTCTTGGTCAGA 59.326 47.619 0.00 0.00 0.00 3.27
229 230 2.098443 GGCGTTTGTTTCTTGGTCAGAA 59.902 45.455 0.00 0.00 39.99 3.02
235 236 2.045561 TTTCTTGGTCAGAAACGCCA 57.954 45.000 0.00 0.00 45.12 5.69
236 237 2.045561 TTCTTGGTCAGAAACGCCAA 57.954 45.000 0.00 0.00 38.68 4.52
237 238 1.305201 TCTTGGTCAGAAACGCCAAC 58.695 50.000 0.00 0.00 37.36 3.77
238 239 3.882541 TTCTTGGTCAGAAACGCCAACG 61.883 50.000 0.00 0.00 38.68 4.10
239 240 2.054140 TTGGTCAGAAACGCCAACGC 62.054 55.000 0.00 0.00 45.53 4.84
240 241 2.251371 GTCAGAAACGCCAACGCC 59.749 61.111 0.00 0.00 45.53 5.68
241 242 2.110213 TCAGAAACGCCAACGCCT 59.890 55.556 0.00 0.00 45.53 5.52
242 243 0.947180 GTCAGAAACGCCAACGCCTA 60.947 55.000 0.00 0.00 45.53 3.93
243 244 0.036765 TCAGAAACGCCAACGCCTAT 60.037 50.000 0.00 0.00 45.53 2.57
244 245 0.096976 CAGAAACGCCAACGCCTATG 59.903 55.000 0.00 0.00 45.53 2.23
245 246 1.024579 AGAAACGCCAACGCCTATGG 61.025 55.000 0.00 0.00 45.53 2.74
256 257 3.059603 GCCTATGGCGTTTCTTCGA 57.940 52.632 0.00 0.00 39.62 3.71
257 258 1.365699 GCCTATGGCGTTTCTTCGAA 58.634 50.000 0.00 0.00 39.62 3.71
258 259 1.735571 GCCTATGGCGTTTCTTCGAAA 59.264 47.619 0.00 0.00 39.62 3.46
259 260 2.475685 GCCTATGGCGTTTCTTCGAAAC 60.476 50.000 0.00 8.92 39.62 2.78
271 272 3.528594 TCGAAACGCGAGCTATCTC 57.471 52.632 15.93 0.00 45.59 2.75
279 280 4.236724 GAGCTATCTCGGCGCTTC 57.763 61.111 7.64 0.00 33.47 3.86
280 281 1.657556 GAGCTATCTCGGCGCTTCT 59.342 57.895 7.64 0.00 33.47 2.85
281 282 0.031449 GAGCTATCTCGGCGCTTCTT 59.969 55.000 7.64 0.00 33.47 2.52
282 283 0.461961 AGCTATCTCGGCGCTTCTTT 59.538 50.000 7.64 0.00 34.52 2.52
283 284 0.579156 GCTATCTCGGCGCTTCTTTG 59.421 55.000 7.64 0.00 0.00 2.77
284 285 1.927895 CTATCTCGGCGCTTCTTTGT 58.072 50.000 7.64 0.00 0.00 2.83
285 286 2.271800 CTATCTCGGCGCTTCTTTGTT 58.728 47.619 7.64 0.00 0.00 2.83
286 287 0.798776 ATCTCGGCGCTTCTTTGTTG 59.201 50.000 7.64 0.00 0.00 3.33
287 288 1.207593 CTCGGCGCTTCTTTGTTGG 59.792 57.895 7.64 0.00 0.00 3.77
288 289 1.227704 TCGGCGCTTCTTTGTTGGA 60.228 52.632 7.64 0.00 0.00 3.53
289 290 0.605319 TCGGCGCTTCTTTGTTGGAT 60.605 50.000 7.64 0.00 0.00 3.41
290 291 1.083489 CGGCGCTTCTTTGTTGGATA 58.917 50.000 7.64 0.00 0.00 2.59
291 292 1.062587 CGGCGCTTCTTTGTTGGATAG 59.937 52.381 7.64 0.00 0.00 2.08
292 293 2.356135 GGCGCTTCTTTGTTGGATAGA 58.644 47.619 7.64 0.00 0.00 1.98
293 294 2.747446 GGCGCTTCTTTGTTGGATAGAA 59.253 45.455 7.64 0.00 0.00 2.10
294 295 3.181506 GGCGCTTCTTTGTTGGATAGAAG 60.182 47.826 7.64 0.00 44.82 2.85
299 300 6.356757 CTTCTTTGTTGGATAGAAGCTAGC 57.643 41.667 6.62 6.62 38.68 3.42
300 301 5.683876 TCTTTGTTGGATAGAAGCTAGCT 57.316 39.130 12.68 12.68 0.00 3.32
301 302 6.791867 TCTTTGTTGGATAGAAGCTAGCTA 57.208 37.500 19.70 2.19 0.00 3.32
302 303 6.574350 TCTTTGTTGGATAGAAGCTAGCTAC 58.426 40.000 19.70 10.36 0.00 3.58
303 304 4.939052 TGTTGGATAGAAGCTAGCTACC 57.061 45.455 19.70 15.96 0.00 3.18
304 305 4.547671 TGTTGGATAGAAGCTAGCTACCT 58.452 43.478 19.70 19.55 0.00 3.08
305 306 4.585162 TGTTGGATAGAAGCTAGCTACCTC 59.415 45.833 19.70 12.39 0.00 3.85
306 307 3.413327 TGGATAGAAGCTAGCTACCTCG 58.587 50.000 19.70 0.00 0.00 4.63
307 308 2.750712 GGATAGAAGCTAGCTACCTCGG 59.249 54.545 19.70 0.00 0.00 4.63
308 309 1.606903 TAGAAGCTAGCTACCTCGGC 58.393 55.000 19.70 1.95 0.00 5.54
309 310 0.395862 AGAAGCTAGCTACCTCGGCA 60.396 55.000 19.70 0.00 0.00 5.69
310 311 0.676736 GAAGCTAGCTACCTCGGCAT 59.323 55.000 19.70 0.00 0.00 4.40
311 312 1.069358 GAAGCTAGCTACCTCGGCATT 59.931 52.381 19.70 0.00 0.00 3.56
312 313 0.390860 AGCTAGCTACCTCGGCATTG 59.609 55.000 17.69 0.00 0.00 2.82
313 314 1.224722 GCTAGCTACCTCGGCATTGC 61.225 60.000 7.70 0.00 0.00 3.56
314 315 0.390860 CTAGCTACCTCGGCATTGCT 59.609 55.000 8.82 0.00 34.92 3.91
315 316 1.613925 CTAGCTACCTCGGCATTGCTA 59.386 52.381 8.82 0.00 32.72 3.49
316 317 1.051812 AGCTACCTCGGCATTGCTAT 58.948 50.000 8.82 0.00 0.00 2.97
317 318 1.151668 GCTACCTCGGCATTGCTATG 58.848 55.000 8.82 3.56 34.76 2.23
318 319 1.541233 GCTACCTCGGCATTGCTATGT 60.541 52.381 8.82 4.07 34.12 2.29
319 320 2.838736 CTACCTCGGCATTGCTATGTT 58.161 47.619 8.82 0.00 34.12 2.71
320 321 1.382522 ACCTCGGCATTGCTATGTTG 58.617 50.000 8.82 3.16 34.12 3.33
321 322 0.664761 CCTCGGCATTGCTATGTTGG 59.335 55.000 8.82 3.85 34.12 3.77
322 323 1.667236 CTCGGCATTGCTATGTTGGA 58.333 50.000 8.82 4.37 34.12 3.53
323 324 1.331756 CTCGGCATTGCTATGTTGGAC 59.668 52.381 8.82 0.00 34.12 4.02
324 325 1.093972 CGGCATTGCTATGTTGGACA 58.906 50.000 8.82 0.00 34.12 4.02
325 326 1.064505 CGGCATTGCTATGTTGGACAG 59.935 52.381 8.82 0.00 34.12 3.51
326 327 2.368439 GGCATTGCTATGTTGGACAGA 58.632 47.619 8.82 0.00 34.12 3.41
327 328 2.754552 GGCATTGCTATGTTGGACAGAA 59.245 45.455 8.82 0.00 34.12 3.02
328 329 3.193267 GGCATTGCTATGTTGGACAGAAA 59.807 43.478 8.82 0.00 34.12 2.52
329 330 4.168760 GCATTGCTATGTTGGACAGAAAC 58.831 43.478 9.87 0.00 34.12 2.78
330 331 4.406069 CATTGCTATGTTGGACAGAAACG 58.594 43.478 0.00 0.00 0.00 3.60
331 332 1.804151 TGCTATGTTGGACAGAAACGC 59.196 47.619 0.00 0.00 0.00 4.84
332 333 1.130561 GCTATGTTGGACAGAAACGCC 59.869 52.381 0.00 0.00 0.00 5.68
333 334 1.393539 CTATGTTGGACAGAAACGCCG 59.606 52.381 0.00 0.00 0.00 6.46
334 335 1.852067 ATGTTGGACAGAAACGCCGC 61.852 55.000 0.00 0.00 0.00 6.53
335 336 3.342627 TTGGACAGAAACGCCGCG 61.343 61.111 12.14 12.14 0.00 6.46
348 349 3.261951 CCGCGGGCTATGACGTTG 61.262 66.667 20.10 0.00 0.00 4.10
349 350 3.925238 CGCGGGCTATGACGTTGC 61.925 66.667 0.00 0.00 0.00 4.17
350 351 2.511600 GCGGGCTATGACGTTGCT 60.512 61.111 0.00 0.00 0.00 3.91
351 352 1.227147 GCGGGCTATGACGTTGCTA 60.227 57.895 0.00 0.00 0.00 3.49
352 353 0.808453 GCGGGCTATGACGTTGCTAA 60.808 55.000 0.00 0.00 0.00 3.09
353 354 1.647346 CGGGCTATGACGTTGCTAAA 58.353 50.000 0.00 0.00 0.00 1.85
354 355 2.004017 CGGGCTATGACGTTGCTAAAA 58.996 47.619 0.00 0.00 0.00 1.52
355 356 2.417239 CGGGCTATGACGTTGCTAAAAA 59.583 45.455 0.00 0.00 0.00 1.94
356 357 3.485216 CGGGCTATGACGTTGCTAAAAAG 60.485 47.826 0.00 0.00 0.00 2.27
357 358 3.687698 GGGCTATGACGTTGCTAAAAAGA 59.312 43.478 0.00 0.00 0.00 2.52
358 359 4.201822 GGGCTATGACGTTGCTAAAAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
359 360 4.392138 GGCTATGACGTTGCTAAAAAGAGT 59.608 41.667 0.00 0.00 0.00 3.24
360 361 5.446073 GGCTATGACGTTGCTAAAAAGAGTC 60.446 44.000 0.00 0.00 0.00 3.36
361 362 5.120208 GCTATGACGTTGCTAAAAAGAGTCA 59.880 40.000 0.00 0.00 40.67 3.41
362 363 5.597813 ATGACGTTGCTAAAAAGAGTCAG 57.402 39.130 0.00 0.00 39.92 3.51
363 364 4.689071 TGACGTTGCTAAAAAGAGTCAGA 58.311 39.130 0.00 0.00 33.84 3.27
364 365 5.297547 TGACGTTGCTAAAAAGAGTCAGAT 58.702 37.500 0.00 0.00 33.84 2.90
365 366 5.405571 TGACGTTGCTAAAAAGAGTCAGATC 59.594 40.000 0.00 0.00 33.84 2.75
366 367 4.386049 ACGTTGCTAAAAAGAGTCAGATCG 59.614 41.667 0.00 0.00 0.00 3.69
367 368 4.386049 CGTTGCTAAAAAGAGTCAGATCGT 59.614 41.667 0.00 0.00 0.00 3.73
368 369 5.612865 GTTGCTAAAAAGAGTCAGATCGTG 58.387 41.667 0.00 0.00 0.00 4.35
369 370 5.134202 TGCTAAAAAGAGTCAGATCGTGA 57.866 39.130 0.00 0.00 0.00 4.35
370 371 5.538118 TGCTAAAAAGAGTCAGATCGTGAA 58.462 37.500 0.00 0.00 36.74 3.18
371 372 5.989168 TGCTAAAAAGAGTCAGATCGTGAAA 59.011 36.000 0.00 0.00 36.74 2.69
372 373 6.650807 TGCTAAAAAGAGTCAGATCGTGAAAT 59.349 34.615 0.00 0.00 36.74 2.17
373 374 7.817478 TGCTAAAAAGAGTCAGATCGTGAAATA 59.183 33.333 0.00 0.00 36.74 1.40
374 375 8.111224 GCTAAAAAGAGTCAGATCGTGAAATAC 58.889 37.037 0.00 0.00 36.74 1.89
375 376 9.360093 CTAAAAAGAGTCAGATCGTGAAATACT 57.640 33.333 0.00 0.00 36.74 2.12
376 377 8.608844 AAAAAGAGTCAGATCGTGAAATACTT 57.391 30.769 0.00 0.00 36.74 2.24
377 378 8.608844 AAAAGAGTCAGATCGTGAAATACTTT 57.391 30.769 0.00 0.00 36.74 2.66
378 379 7.820044 AAGAGTCAGATCGTGAAATACTTTC 57.180 36.000 0.00 0.00 36.74 2.62
379 380 6.925211 AGAGTCAGATCGTGAAATACTTTCA 58.075 36.000 0.00 0.00 46.68 2.69
399 400 9.683069 ACTTTCATATCAAGTTCATTTTGTGAC 57.317 29.630 0.00 0.00 36.32 3.67
400 401 9.681692 CTTTCATATCAAGTTCATTTTGTGACA 57.318 29.630 0.00 0.00 36.32 3.58
403 404 9.681692 TCATATCAAGTTCATTTTGTGACAAAG 57.318 29.630 10.91 1.01 36.32 2.77
404 405 9.467258 CATATCAAGTTCATTTTGTGACAAAGT 57.533 29.630 10.91 5.51 36.32 2.66
406 407 8.776376 ATCAAGTTCATTTTGTGACAAAGTTT 57.224 26.923 10.91 0.00 36.32 2.66
407 408 9.868277 ATCAAGTTCATTTTGTGACAAAGTTTA 57.132 25.926 10.91 0.00 36.32 2.01
408 409 9.868277 TCAAGTTCATTTTGTGACAAAGTTTAT 57.132 25.926 10.91 0.00 36.32 1.40
418 419 8.865590 TTGTGACAAAGTTTATTAAAAGAGCC 57.134 30.769 0.00 0.00 0.00 4.70
419 420 8.001881 TGTGACAAAGTTTATTAAAAGAGCCA 57.998 30.769 0.00 0.00 0.00 4.75
420 421 8.637986 TGTGACAAAGTTTATTAAAAGAGCCAT 58.362 29.630 0.00 0.00 0.00 4.40
436 437 7.631717 AAGAGCCATAATAGTGAAAAAGTCC 57.368 36.000 0.00 0.00 0.00 3.85
437 438 5.817816 AGAGCCATAATAGTGAAAAAGTCCG 59.182 40.000 0.00 0.00 0.00 4.79
438 439 4.335594 AGCCATAATAGTGAAAAAGTCCGC 59.664 41.667 0.00 0.00 0.00 5.54
439 440 4.095782 GCCATAATAGTGAAAAAGTCCGCA 59.904 41.667 0.00 0.00 0.00 5.69
440 441 5.730568 GCCATAATAGTGAAAAAGTCCGCAG 60.731 44.000 0.00 0.00 0.00 5.18
441 442 5.584649 CCATAATAGTGAAAAAGTCCGCAGA 59.415 40.000 0.00 0.00 0.00 4.26
442 443 6.238211 CCATAATAGTGAAAAAGTCCGCAGAG 60.238 42.308 0.00 0.00 0.00 3.35
443 444 2.622064 AGTGAAAAAGTCCGCAGAGT 57.378 45.000 0.00 0.00 0.00 3.24
444 445 2.484889 AGTGAAAAAGTCCGCAGAGTC 58.515 47.619 0.00 0.00 0.00 3.36
445 446 2.158957 AGTGAAAAAGTCCGCAGAGTCA 60.159 45.455 0.00 0.00 0.00 3.41
446 447 2.612212 GTGAAAAAGTCCGCAGAGTCAA 59.388 45.455 0.00 0.00 0.00 3.18
447 448 2.872245 TGAAAAAGTCCGCAGAGTCAAG 59.128 45.455 0.00 0.00 0.00 3.02
448 449 1.230324 AAAAGTCCGCAGAGTCAAGC 58.770 50.000 0.00 0.00 0.00 4.01
449 450 0.603975 AAAGTCCGCAGAGTCAAGCC 60.604 55.000 0.00 0.00 0.00 4.35
450 451 2.435059 GTCCGCAGAGTCAAGCCC 60.435 66.667 0.00 0.00 0.00 5.19
451 452 3.706373 TCCGCAGAGTCAAGCCCC 61.706 66.667 0.00 0.00 0.00 5.80
452 453 3.710722 CCGCAGAGTCAAGCCCCT 61.711 66.667 0.00 0.00 0.00 4.79
453 454 2.359169 CCGCAGAGTCAAGCCCCTA 61.359 63.158 0.00 0.00 0.00 3.53
454 455 1.153549 CGCAGAGTCAAGCCCCTAC 60.154 63.158 0.00 0.00 0.00 3.18
455 456 1.608717 CGCAGAGTCAAGCCCCTACT 61.609 60.000 0.00 0.00 0.00 2.57
456 457 0.176910 GCAGAGTCAAGCCCCTACTC 59.823 60.000 0.00 0.00 39.95 2.59
458 459 1.859302 AGAGTCAAGCCCCTACTCTG 58.141 55.000 3.55 0.00 46.25 3.35
459 460 1.077993 AGAGTCAAGCCCCTACTCTGT 59.922 52.381 3.55 0.00 46.25 3.41
460 461 1.478916 GAGTCAAGCCCCTACTCTGTC 59.521 57.143 0.00 0.00 37.30 3.51
461 462 0.173708 GTCAAGCCCCTACTCTGTCG 59.826 60.000 0.00 0.00 0.00 4.35
462 463 0.039180 TCAAGCCCCTACTCTGTCGA 59.961 55.000 0.00 0.00 0.00 4.20
463 464 0.457851 CAAGCCCCTACTCTGTCGAG 59.542 60.000 0.00 0.00 43.10 4.04
464 465 0.331954 AAGCCCCTACTCTGTCGAGA 59.668 55.000 0.00 0.00 39.74 4.04
465 466 0.394625 AGCCCCTACTCTGTCGAGAC 60.395 60.000 0.00 0.00 39.74 3.36
466 467 1.716826 GCCCCTACTCTGTCGAGACG 61.717 65.000 0.00 0.00 39.74 4.18
467 468 1.716826 CCCCTACTCTGTCGAGACGC 61.717 65.000 0.00 0.00 39.74 5.19
468 469 1.348938 CCTACTCTGTCGAGACGCG 59.651 63.158 3.53 3.53 39.74 6.01
469 470 1.297012 CTACTCTGTCGAGACGCGC 60.297 63.158 5.73 0.00 39.74 6.86
470 471 1.967597 CTACTCTGTCGAGACGCGCA 61.968 60.000 5.73 0.00 39.74 6.09
471 472 1.366854 TACTCTGTCGAGACGCGCAT 61.367 55.000 5.73 0.00 39.74 4.73
472 473 2.202479 TCTGTCGAGACGCGCATG 60.202 61.111 5.73 0.00 40.61 4.06
473 474 3.906649 CTGTCGAGACGCGCATGC 61.907 66.667 5.73 7.91 40.61 4.06
474 475 4.715892 TGTCGAGACGCGCATGCA 62.716 61.111 19.57 0.00 42.97 3.96
475 476 3.257561 GTCGAGACGCGCATGCAT 61.258 61.111 19.57 1.52 42.97 3.96
476 477 3.256833 TCGAGACGCGCATGCATG 61.257 61.111 22.70 22.70 42.97 4.06
530 542 2.825836 GGCGCCTGAGGTGAATGG 60.826 66.667 22.15 0.00 34.74 3.16
533 545 2.401766 CGCCTGAGGTGAATGGCAC 61.402 63.158 6.07 0.00 45.13 5.01
570 582 2.815211 CGGCCCGTGAGTGACATG 60.815 66.667 0.00 0.00 35.47 3.21
571 583 2.662596 GGCCCGTGAGTGACATGA 59.337 61.111 0.00 0.00 37.69 3.07
572 584 1.741770 GGCCCGTGAGTGACATGAC 60.742 63.158 0.00 0.00 37.69 3.06
582 594 2.014018 TGACATGACGACGTGCACG 61.014 57.895 35.99 35.99 46.33 5.34
645 657 4.182339 GCTCCCGGTCTTTTACTTAAGAG 58.818 47.826 10.09 0.00 34.95 2.85
646 658 4.182339 CTCCCGGTCTTTTACTTAAGAGC 58.818 47.826 10.09 0.00 44.92 4.09
647 659 3.055602 TCCCGGTCTTTTACTTAAGAGCC 60.056 47.826 10.09 1.61 45.35 4.70
678 690 1.193203 CGCTGATCGACCAATATGTGC 59.807 52.381 0.00 0.00 41.67 4.57
679 691 2.487934 GCTGATCGACCAATATGTGCT 58.512 47.619 0.00 0.00 0.00 4.40
680 692 2.874701 GCTGATCGACCAATATGTGCTT 59.125 45.455 0.00 0.00 0.00 3.91
681 693 3.303593 GCTGATCGACCAATATGTGCTTG 60.304 47.826 0.00 0.00 0.00 4.01
683 695 3.118445 TGATCGACCAATATGTGCTTGGA 60.118 43.478 8.55 0.00 44.95 3.53
684 696 2.905075 TCGACCAATATGTGCTTGGAG 58.095 47.619 8.55 2.97 44.95 3.86
690 702 5.570320 ACCAATATGTGCTTGGAGTAGTTT 58.430 37.500 8.55 0.00 44.95 2.66
716 728 4.821589 GCCGTTGAGGAGAGGCGG 62.822 72.222 0.00 0.00 45.00 6.13
753 767 2.436646 CGGCTGGCTGGATCGTTT 60.437 61.111 0.00 0.00 0.00 3.60
764 778 3.002348 GCTGGATCGTTTAGGTATTGTGC 59.998 47.826 0.00 0.00 0.00 4.57
823 840 3.663176 CCGGCCGGCATGCATTAG 61.663 66.667 34.96 3.26 0.00 1.73
825 842 3.297620 GGCCGGCATGCATTAGGG 61.298 66.667 30.85 12.71 0.00 3.53
826 843 3.297620 GCCGGCATGCATTAGGGG 61.298 66.667 24.80 10.94 0.00 4.79
827 844 3.297620 CCGGCATGCATTAGGGGC 61.298 66.667 21.36 0.00 0.00 5.80
828 845 3.297620 CGGCATGCATTAGGGGCC 61.298 66.667 21.36 13.62 41.20 5.80
829 846 2.123338 GGCATGCATTAGGGGCCA 60.123 61.111 21.36 0.00 44.01 5.36
830 847 1.534717 GGCATGCATTAGGGGCCAT 60.535 57.895 21.36 0.00 44.01 4.40
831 848 1.669440 GCATGCATTAGGGGCCATG 59.331 57.895 14.21 1.20 0.00 3.66
832 849 1.823169 GCATGCATTAGGGGCCATGG 61.823 60.000 14.21 7.63 0.00 3.66
833 850 0.178955 CATGCATTAGGGGCCATGGA 60.179 55.000 18.40 1.79 0.00 3.41
834 851 0.788383 ATGCATTAGGGGCCATGGAT 59.212 50.000 18.40 4.53 0.00 3.41
835 852 0.178955 TGCATTAGGGGCCATGGATG 60.179 55.000 18.40 10.27 0.00 3.51
836 853 1.538687 GCATTAGGGGCCATGGATGC 61.539 60.000 18.40 20.23 33.97 3.91
837 854 0.178955 CATTAGGGGCCATGGATGCA 60.179 55.000 18.40 0.00 0.00 3.96
838 855 0.788383 ATTAGGGGCCATGGATGCAT 59.212 50.000 18.40 0.00 0.00 3.96
839 856 0.178955 TTAGGGGCCATGGATGCATG 60.179 55.000 18.40 19.49 0.00 4.06
840 857 2.718487 TAGGGGCCATGGATGCATGC 62.718 60.000 20.86 11.82 0.00 4.06
841 858 2.523412 GGGCCATGGATGCATGCT 60.523 61.111 20.86 4.11 0.00 3.79
842 859 2.138179 GGGCCATGGATGCATGCTT 61.138 57.895 20.86 13.23 0.00 3.91
843 860 1.692173 GGGCCATGGATGCATGCTTT 61.692 55.000 20.86 6.31 0.00 3.51
844 861 0.179468 GGCCATGGATGCATGCTTTT 59.821 50.000 20.86 3.46 0.00 2.27
845 862 1.407712 GGCCATGGATGCATGCTTTTT 60.408 47.619 20.86 0.66 0.00 1.94
864 881 5.600908 TTTTTGCATTACGAGTGTAGTCC 57.399 39.130 0.00 0.00 0.00 3.85
865 882 2.554806 TGCATTACGAGTGTAGTCCG 57.445 50.000 0.00 0.00 0.00 4.79
866 883 1.133598 TGCATTACGAGTGTAGTCCGG 59.866 52.381 0.00 0.00 0.00 5.14
867 884 1.535437 GCATTACGAGTGTAGTCCGGG 60.535 57.143 0.00 0.00 0.00 5.73
868 885 2.019249 CATTACGAGTGTAGTCCGGGA 58.981 52.381 0.00 0.00 0.00 5.14
869 886 1.453155 TTACGAGTGTAGTCCGGGAC 58.547 55.000 19.61 19.61 0.00 4.46
975 1035 1.097547 AATCTGAATCGGCCGGCTTG 61.098 55.000 28.56 19.56 0.00 4.01
1068 1131 2.824041 CCCTAGCCGCGCACATTT 60.824 61.111 8.75 0.00 0.00 2.32
1069 1132 2.404789 CCTAGCCGCGCACATTTG 59.595 61.111 8.75 0.00 0.00 2.32
1072 1135 0.109781 CTAGCCGCGCACATTTGTTT 60.110 50.000 8.75 0.00 0.00 2.83
1074 1137 2.656807 GCCGCGCACATTTGTTTGG 61.657 57.895 8.75 0.00 0.00 3.28
1075 1138 1.299773 CCGCGCACATTTGTTTGGT 60.300 52.632 8.75 0.00 0.00 3.67
1076 1139 0.873743 CCGCGCACATTTGTTTGGTT 60.874 50.000 8.75 0.00 0.00 3.67
1077 1140 1.600663 CCGCGCACATTTGTTTGGTTA 60.601 47.619 8.75 0.00 0.00 2.85
1145 1223 0.892755 TGGTACGTTCAGGCTAGTGG 59.107 55.000 0.00 0.00 0.00 4.00
1181 1259 3.052082 CACCCTGAGCGCACAAGG 61.052 66.667 19.38 19.38 0.00 3.61
1311 1391 1.359117 CGCATGTACGTCCTCCGAT 59.641 57.895 0.00 0.00 40.70 4.18
1322 1402 3.194968 ACGTCCTCCGATGTGAAACTAAT 59.805 43.478 0.00 0.00 36.85 1.73
1324 1404 4.738740 CGTCCTCCGATGTGAAACTAATAC 59.261 45.833 0.00 0.00 39.56 1.89
1325 1405 5.450137 CGTCCTCCGATGTGAAACTAATACT 60.450 44.000 0.00 0.00 39.56 2.12
1327 1407 7.140048 GTCCTCCGATGTGAAACTAATACTAG 58.860 42.308 0.00 0.00 38.04 2.57
1330 1410 6.736123 TCCGATGTGAAACTAATACTAGCTC 58.264 40.000 0.00 0.00 38.04 4.09
1331 1411 6.546403 TCCGATGTGAAACTAATACTAGCTCT 59.454 38.462 0.00 0.00 38.04 4.09
1333 1413 7.168302 CCGATGTGAAACTAATACTAGCTCTTG 59.832 40.741 0.00 0.00 38.04 3.02
1334 1414 7.702772 CGATGTGAAACTAATACTAGCTCTTGT 59.297 37.037 0.00 0.00 38.04 3.16
1350 1430 7.719871 AGCTCTTGTATTAGTTTACAGAGGA 57.280 36.000 0.00 0.00 33.81 3.71
1351 1431 8.135382 AGCTCTTGTATTAGTTTACAGAGGAA 57.865 34.615 0.00 0.00 33.81 3.36
1352 1432 8.254508 AGCTCTTGTATTAGTTTACAGAGGAAG 58.745 37.037 0.00 0.00 33.81 3.46
1353 1433 8.035984 GCTCTTGTATTAGTTTACAGAGGAAGT 58.964 37.037 0.00 0.00 33.81 3.01
1356 1436 9.286946 CTTGTATTAGTTTACAGAGGAAGTACG 57.713 37.037 0.00 0.00 33.81 3.67
1385 1465 4.058124 TCAGTATGTAATGCTCGAATGCC 58.942 43.478 0.00 0.00 37.07 4.40
1396 1491 2.767505 CTCGAATGCCCTTACATACCC 58.232 52.381 0.00 0.00 0.00 3.69
1406 1501 0.816373 TTACATACCCTACGCACGCA 59.184 50.000 0.00 0.00 0.00 5.24
1425 1526 0.037697 ACATGCATGCAGTTTGCTGG 60.038 50.000 26.69 9.67 45.31 4.85
1430 1531 2.986306 ATGCAGTTTGCTGGAGCGC 61.986 57.895 0.00 0.00 46.04 5.92
1431 1532 4.410743 GCAGTTTGCTGGAGCGCC 62.411 66.667 2.29 0.00 45.83 6.53
1488 1589 3.827898 GTCGACCAGGGCTCGGAG 61.828 72.222 3.51 0.00 0.00 4.63
1552 1653 1.005394 GGACTGTGGTGGGTGTACG 60.005 63.158 0.00 0.00 0.00 3.67
1589 1690 1.248785 AAGCTGCGGGAGAAGTACGA 61.249 55.000 0.00 0.00 38.01 3.43
1626 1727 3.402681 CCGGACTGCCTCACCCAT 61.403 66.667 0.00 0.00 0.00 4.00
1672 1773 0.324738 CCAGGAGTACAGGGAGCTCA 60.325 60.000 17.19 0.00 0.00 4.26
1675 1776 1.668101 GGAGTACAGGGAGCTCACCG 61.668 65.000 13.73 4.59 0.00 4.94
1763 1870 4.961435 AGTAGCAAGTACTCCGTAGAAC 57.039 45.455 0.00 0.00 37.41 3.01
1764 1871 4.330250 AGTAGCAAGTACTCCGTAGAACA 58.670 43.478 0.00 0.00 37.41 3.18
1765 1872 4.948621 AGTAGCAAGTACTCCGTAGAACAT 59.051 41.667 0.00 0.00 37.41 2.71
1766 1873 4.373348 AGCAAGTACTCCGTAGAACATC 57.627 45.455 0.00 0.00 0.00 3.06
1767 1874 3.130693 AGCAAGTACTCCGTAGAACATCC 59.869 47.826 0.00 0.00 0.00 3.51
1768 1875 3.119245 GCAAGTACTCCGTAGAACATCCA 60.119 47.826 0.00 0.00 0.00 3.41
1769 1876 4.441634 GCAAGTACTCCGTAGAACATCCAT 60.442 45.833 0.00 0.00 0.00 3.41
1770 1877 5.661458 CAAGTACTCCGTAGAACATCCATT 58.339 41.667 0.00 0.00 0.00 3.16
1771 1878 5.934402 AGTACTCCGTAGAACATCCATTT 57.066 39.130 0.00 0.00 0.00 2.32
1772 1879 6.295719 AGTACTCCGTAGAACATCCATTTT 57.704 37.500 0.00 0.00 0.00 1.82
1773 1880 6.708285 AGTACTCCGTAGAACATCCATTTTT 58.292 36.000 0.00 0.00 0.00 1.94
1774 1881 5.880054 ACTCCGTAGAACATCCATTTTTG 57.120 39.130 0.00 0.00 0.00 2.44
1775 1882 5.556915 ACTCCGTAGAACATCCATTTTTGA 58.443 37.500 0.00 0.00 0.00 2.69
1776 1883 5.643777 ACTCCGTAGAACATCCATTTTTGAG 59.356 40.000 0.00 0.00 0.00 3.02
1777 1884 5.800296 TCCGTAGAACATCCATTTTTGAGA 58.200 37.500 0.00 0.00 0.00 3.27
1778 1885 5.642063 TCCGTAGAACATCCATTTTTGAGAC 59.358 40.000 0.00 0.00 0.00 3.36
1779 1886 5.411361 CCGTAGAACATCCATTTTTGAGACA 59.589 40.000 0.00 0.00 0.00 3.41
1780 1887 6.072728 CCGTAGAACATCCATTTTTGAGACAA 60.073 38.462 0.00 0.00 0.00 3.18
1781 1888 7.359595 CGTAGAACATCCATTTTTGAGACAAA 58.640 34.615 0.00 0.00 0.00 2.83
1782 1889 8.023128 CGTAGAACATCCATTTTTGAGACAAAT 58.977 33.333 0.00 0.00 0.00 2.32
1798 1905 9.685828 TTGAGACAAATAATTTTAAACGAAGGG 57.314 29.630 0.00 0.00 0.00 3.95
1799 1906 9.069082 TGAGACAAATAATTTTAAACGAAGGGA 57.931 29.630 0.00 0.00 0.00 4.20
1800 1907 9.556030 GAGACAAATAATTTTAAACGAAGGGAG 57.444 33.333 0.00 0.00 0.00 4.30
1801 1908 9.074576 AGACAAATAATTTTAAACGAAGGGAGT 57.925 29.630 0.00 0.00 0.00 3.85
1807 1914 9.729281 ATAATTTTAAACGAAGGGAGTAAGTCA 57.271 29.630 0.00 0.00 0.00 3.41
1808 1915 8.631480 AATTTTAAACGAAGGGAGTAAGTCAT 57.369 30.769 0.00 0.00 0.00 3.06
1809 1916 8.631480 ATTTTAAACGAAGGGAGTAAGTCATT 57.369 30.769 0.00 0.00 0.00 2.57
1810 1917 7.429636 TTTAAACGAAGGGAGTAAGTCATTG 57.570 36.000 0.00 0.00 0.00 2.82
1811 1918 4.884668 AACGAAGGGAGTAAGTCATTGA 57.115 40.909 0.00 0.00 0.00 2.57
1812 1919 4.457834 ACGAAGGGAGTAAGTCATTGAG 57.542 45.455 0.00 0.00 0.00 3.02
1813 1920 3.195825 ACGAAGGGAGTAAGTCATTGAGG 59.804 47.826 0.00 0.00 0.00 3.86
1814 1921 3.447586 CGAAGGGAGTAAGTCATTGAGGA 59.552 47.826 0.00 0.00 0.00 3.71
1815 1922 4.081642 CGAAGGGAGTAAGTCATTGAGGAA 60.082 45.833 0.00 0.00 0.00 3.36
1816 1923 5.395768 CGAAGGGAGTAAGTCATTGAGGAAT 60.396 44.000 0.00 0.00 0.00 3.01
1828 1935 9.717942 AAGTCATTGAGGAATATCTATAACTGC 57.282 33.333 0.00 0.00 0.00 4.40
2093 2217 3.935828 GGTTTGCTCTGTCTGGTATCTTC 59.064 47.826 0.00 0.00 0.00 2.87
2098 2222 3.304391 GCTCTGTCTGGTATCTTCGCTAG 60.304 52.174 0.00 0.00 0.00 3.42
2101 2225 2.688446 TGTCTGGTATCTTCGCTAGTGG 59.312 50.000 2.90 0.00 0.00 4.00
2114 2238 0.591741 CTAGTGGCGCGTAGTACTGC 60.592 60.000 8.43 2.60 0.00 4.40
2138 2262 1.529226 TGTGGCGATTTGTACTTGGG 58.471 50.000 0.00 0.00 0.00 4.12
2180 2322 0.978151 ATGCGTGGTTAGTGTACCCA 59.022 50.000 0.00 0.00 37.39 4.51
2216 2358 2.732016 CCTGTTCCGTCCGTGTCA 59.268 61.111 0.00 0.00 0.00 3.58
2268 2414 1.612199 GGTTTACGGTGGCCATTCTCA 60.612 52.381 9.72 0.00 0.00 3.27
2269 2415 1.737793 GTTTACGGTGGCCATTCTCAG 59.262 52.381 9.72 0.00 0.00 3.35
2272 2418 0.981183 ACGGTGGCCATTCTCAGTAA 59.019 50.000 9.72 0.00 0.00 2.24
2280 2426 3.071479 GCCATTCTCAGTAACAAACGGA 58.929 45.455 0.00 0.00 0.00 4.69
2281 2427 3.500680 GCCATTCTCAGTAACAAACGGAA 59.499 43.478 0.00 0.00 31.56 4.30
2282 2428 4.612939 GCCATTCTCAGTAACAAACGGAAC 60.613 45.833 0.00 0.00 31.56 3.62
2303 2449 8.231304 GGAACGGCATCATCATATTAATTTTG 57.769 34.615 0.00 0.00 0.00 2.44
2304 2450 7.867403 GGAACGGCATCATCATATTAATTTTGT 59.133 33.333 0.00 0.00 0.00 2.83
2402 2551 1.550072 CCCACCCCATGTGCTAAAAAG 59.450 52.381 0.00 0.00 44.01 2.27
2410 2559 3.244181 CCATGTGCTAAAAAGGGCAAGTT 60.244 43.478 0.00 0.00 0.00 2.66
2422 2572 1.977854 GGGCAAGTTCAATTTCCCCTT 59.022 47.619 0.00 0.00 0.00 3.95
2429 2579 5.692115 AGTTCAATTTCCCCTTTTGTTGT 57.308 34.783 0.00 0.00 0.00 3.32
2438 2588 1.602377 CCCTTTTGTTGTCACGTCCTC 59.398 52.381 0.00 0.00 0.00 3.71
2445 2595 0.179067 TTGTCACGTCCTCACAACCC 60.179 55.000 0.00 0.00 0.00 4.11
2447 2597 0.600255 GTCACGTCCTCACAACCCAG 60.600 60.000 0.00 0.00 0.00 4.45
2467 2642 1.224592 CATCCTTTCCCTCCACCCG 59.775 63.158 0.00 0.00 0.00 5.28
2486 2662 2.037871 CCACCAGAAAACCCAACGG 58.962 57.895 0.00 0.00 0.00 4.44
2488 2664 1.106944 CACCAGAAAACCCAACGGCT 61.107 55.000 0.00 0.00 0.00 5.52
2517 2693 2.595009 GATCCCCCGTGCAACTCCTC 62.595 65.000 0.00 0.00 31.75 3.71
2518 2694 4.410400 CCCCCGTGCAACTCCTCC 62.410 72.222 0.00 0.00 31.75 4.30
2519 2695 3.322466 CCCCGTGCAACTCCTCCT 61.322 66.667 0.00 0.00 31.75 3.69
2832 3012 2.715763 TTCCCACTCTGTACCTTCCT 57.284 50.000 0.00 0.00 0.00 3.36
2893 3073 4.558538 AGTGTTTGCAGAACATGACTTC 57.441 40.909 14.59 0.00 32.23 3.01
2905 3085 2.567169 ACATGACTTCGATCTTGTCCCA 59.433 45.455 0.00 0.00 33.02 4.37
2908 3088 1.936547 GACTTCGATCTTGTCCCATGC 59.063 52.381 0.00 0.00 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.517450 CCTGATCCGAAACGCGAGC 61.517 63.158 15.93 0.00 44.57 5.03
1 2 1.153823 ACCTGATCCGAAACGCGAG 60.154 57.895 15.93 0.20 44.57 5.03
2 3 1.445410 CACCTGATCCGAAACGCGA 60.445 57.895 15.93 0.00 44.57 5.87
3 4 1.413767 CTCACCTGATCCGAAACGCG 61.414 60.000 3.53 3.53 40.47 6.01
4 5 0.108804 TCTCACCTGATCCGAAACGC 60.109 55.000 0.00 0.00 0.00 4.84
5 6 2.363788 TTCTCACCTGATCCGAAACG 57.636 50.000 0.00 0.00 0.00 3.60
6 7 2.412089 CGTTTCTCACCTGATCCGAAAC 59.588 50.000 0.00 0.00 39.77 2.78
7 8 2.683968 CGTTTCTCACCTGATCCGAAA 58.316 47.619 0.00 0.00 0.00 3.46
8 9 1.671850 GCGTTTCTCACCTGATCCGAA 60.672 52.381 0.00 0.00 0.00 4.30
9 10 0.108804 GCGTTTCTCACCTGATCCGA 60.109 55.000 0.00 0.00 0.00 4.55
10 11 1.084370 GGCGTTTCTCACCTGATCCG 61.084 60.000 0.00 0.00 0.00 4.18
11 12 0.036388 TGGCGTTTCTCACCTGATCC 60.036 55.000 0.00 0.00 0.00 3.36
12 13 2.029838 ATGGCGTTTCTCACCTGATC 57.970 50.000 0.00 0.00 0.00 2.92
13 14 2.158900 CCTATGGCGTTTCTCACCTGAT 60.159 50.000 0.00 0.00 0.00 2.90
14 15 1.207089 CCTATGGCGTTTCTCACCTGA 59.793 52.381 0.00 0.00 0.00 3.86
15 16 1.656652 CCTATGGCGTTTCTCACCTG 58.343 55.000 0.00 0.00 0.00 4.00
16 17 0.107654 GCCTATGGCGTTTCTCACCT 60.108 55.000 0.00 0.00 39.62 4.00
17 18 2.394604 GCCTATGGCGTTTCTCACC 58.605 57.895 0.00 0.00 39.62 4.02
28 29 0.394352 AGAAACGCCAAGGCCTATGG 60.394 55.000 22.63 22.63 41.08 2.74
29 30 1.401905 GAAGAAACGCCAAGGCCTATG 59.598 52.381 5.16 6.84 37.98 2.23
30 31 1.751437 GAAGAAACGCCAAGGCCTAT 58.249 50.000 5.16 0.00 37.98 2.57
31 32 0.672401 CGAAGAAACGCCAAGGCCTA 60.672 55.000 5.16 0.00 37.98 3.93
32 33 1.966451 CGAAGAAACGCCAAGGCCT 60.966 57.895 0.00 0.00 37.98 5.19
33 34 2.561373 CGAAGAAACGCCAAGGCC 59.439 61.111 5.34 0.00 37.98 5.19
41 42 0.669318 TGGGTGCTAGCGAAGAAACG 60.669 55.000 10.77 0.00 0.00 3.60
42 43 1.197036 GTTGGGTGCTAGCGAAGAAAC 59.803 52.381 10.77 7.23 0.00 2.78
43 44 1.519408 GTTGGGTGCTAGCGAAGAAA 58.481 50.000 10.77 0.00 0.00 2.52
44 45 0.321298 GGTTGGGTGCTAGCGAAGAA 60.321 55.000 10.77 0.00 0.00 2.52
45 46 1.295423 GGTTGGGTGCTAGCGAAGA 59.705 57.895 10.77 0.00 0.00 2.87
46 47 1.745489 GGGTTGGGTGCTAGCGAAG 60.745 63.158 10.77 0.00 0.00 3.79
47 48 2.349755 GGGTTGGGTGCTAGCGAA 59.650 61.111 10.77 0.00 0.00 4.70
48 49 2.925706 TGGGTTGGGTGCTAGCGA 60.926 61.111 10.77 0.00 0.00 4.93
49 50 2.746277 GTGGGTTGGGTGCTAGCG 60.746 66.667 10.77 0.00 0.00 4.26
50 51 1.377333 GAGTGGGTTGGGTGCTAGC 60.377 63.158 8.10 8.10 0.00 3.42
51 52 1.079127 CGAGTGGGTTGGGTGCTAG 60.079 63.158 0.00 0.00 0.00 3.42
52 53 3.065306 CGAGTGGGTTGGGTGCTA 58.935 61.111 0.00 0.00 0.00 3.49
53 54 4.643387 GCGAGTGGGTTGGGTGCT 62.643 66.667 0.00 0.00 0.00 4.40
54 55 4.643387 AGCGAGTGGGTTGGGTGC 62.643 66.667 0.00 0.00 0.00 5.01
55 56 2.669569 CAGCGAGTGGGTTGGGTG 60.670 66.667 0.00 0.00 0.00 4.61
56 57 4.643387 GCAGCGAGTGGGTTGGGT 62.643 66.667 0.00 0.00 0.00 4.51
58 59 4.335647 AGGCAGCGAGTGGGTTGG 62.336 66.667 0.00 0.00 0.00 3.77
59 60 2.743928 GAGGCAGCGAGTGGGTTG 60.744 66.667 0.00 0.00 0.00 3.77
60 61 4.379243 CGAGGCAGCGAGTGGGTT 62.379 66.667 0.00 0.00 0.00 4.11
62 63 4.803426 GACGAGGCAGCGAGTGGG 62.803 72.222 6.78 0.00 34.83 4.61
63 64 3.978723 CTGACGAGGCAGCGAGTGG 62.979 68.421 6.78 0.00 34.83 4.00
64 65 2.505777 CTGACGAGGCAGCGAGTG 60.506 66.667 6.78 0.00 34.83 3.51
65 66 3.753434 CCTGACGAGGCAGCGAGT 61.753 66.667 0.00 0.00 34.56 4.18
66 67 4.504916 CCCTGACGAGGCAGCGAG 62.505 72.222 0.00 0.00 38.17 5.03
68 69 3.883744 AAACCCTGACGAGGCAGCG 62.884 63.158 0.00 0.00 38.17 5.18
69 70 1.578206 GAAAACCCTGACGAGGCAGC 61.578 60.000 0.00 0.00 38.17 5.25
70 71 0.955919 GGAAAACCCTGACGAGGCAG 60.956 60.000 0.00 0.00 38.17 4.85
71 72 1.072505 GGAAAACCCTGACGAGGCA 59.927 57.895 0.00 0.00 38.17 4.75
72 73 1.375326 AGGAAAACCCTGACGAGGC 59.625 57.895 0.00 0.00 45.61 4.70
81 82 0.962855 GCAGCTGAGGAGGAAAACCC 60.963 60.000 20.43 0.00 0.00 4.11
82 83 0.962855 GGCAGCTGAGGAGGAAAACC 60.963 60.000 20.43 0.21 0.00 3.27
83 84 0.250901 TGGCAGCTGAGGAGGAAAAC 60.251 55.000 20.43 0.00 0.00 2.43
84 85 0.037303 CTGGCAGCTGAGGAGGAAAA 59.963 55.000 20.43 0.00 0.00 2.29
85 86 0.837691 TCTGGCAGCTGAGGAGGAAA 60.838 55.000 20.43 0.00 0.00 3.13
86 87 1.229304 TCTGGCAGCTGAGGAGGAA 60.229 57.895 20.43 0.00 0.00 3.36
87 88 1.685077 CTCTGGCAGCTGAGGAGGA 60.685 63.158 20.43 6.52 0.00 3.71
88 89 1.685077 TCTCTGGCAGCTGAGGAGG 60.685 63.158 20.43 3.95 0.00 4.30
89 90 1.516892 GTCTCTGGCAGCTGAGGAG 59.483 63.158 20.43 19.23 0.00 3.69
90 91 2.346541 CGTCTCTGGCAGCTGAGGA 61.347 63.158 20.43 10.52 0.00 3.71
91 92 2.183811 CGTCTCTGGCAGCTGAGG 59.816 66.667 20.43 11.91 0.00 3.86
92 93 2.508887 GCGTCTCTGGCAGCTGAG 60.509 66.667 20.43 7.04 0.00 3.35
93 94 4.074526 GGCGTCTCTGGCAGCTGA 62.075 66.667 20.43 7.78 0.00 4.26
103 104 4.388499 TTTCTGGCCCGGCGTCTC 62.388 66.667 6.01 0.00 0.00 3.36
104 105 4.699522 GTTTCTGGCCCGGCGTCT 62.700 66.667 6.01 0.00 0.00 4.18
113 114 1.648467 CTAGCCTTGGCGTTTCTGGC 61.648 60.000 5.95 0.00 43.52 4.85
114 115 1.648467 GCTAGCCTTGGCGTTTCTGG 61.648 60.000 2.29 0.00 0.00 3.86
115 116 1.796796 GCTAGCCTTGGCGTTTCTG 59.203 57.895 2.29 0.00 0.00 3.02
116 117 4.303257 GCTAGCCTTGGCGTTTCT 57.697 55.556 2.29 0.00 0.00 2.52
123 124 2.253414 GAAAACGCCGCTAGCCTTGG 62.253 60.000 9.66 5.92 38.78 3.61
124 125 1.134694 GAAAACGCCGCTAGCCTTG 59.865 57.895 9.66 0.84 38.78 3.61
125 126 1.298859 CTGAAAACGCCGCTAGCCTT 61.299 55.000 9.66 0.00 38.78 4.35
126 127 1.741770 CTGAAAACGCCGCTAGCCT 60.742 57.895 9.66 0.00 38.78 4.58
127 128 2.785258 CTGAAAACGCCGCTAGCC 59.215 61.111 9.66 0.00 38.78 3.93
128 129 2.098489 GCTGAAAACGCCGCTAGC 59.902 61.111 4.06 4.06 38.52 3.42
129 130 2.785258 GGCTGAAAACGCCGCTAG 59.215 61.111 0.00 0.00 37.87 3.42
135 136 4.219802 GTTTCTAAGAAGGCTGAAAACGC 58.780 43.478 0.00 0.00 31.47 4.84
136 137 4.455124 CGTTTCTAAGAAGGCTGAAAACG 58.545 43.478 11.66 11.66 37.55 3.60
137 138 4.219802 GCGTTTCTAAGAAGGCTGAAAAC 58.780 43.478 0.00 0.00 37.42 2.43
138 139 3.252458 GGCGTTTCTAAGAAGGCTGAAAA 59.748 43.478 0.00 0.00 39.60 2.29
139 140 2.812011 GGCGTTTCTAAGAAGGCTGAAA 59.188 45.455 0.00 0.00 39.60 2.69
140 141 2.224426 TGGCGTTTCTAAGAAGGCTGAA 60.224 45.455 0.00 0.00 39.60 3.02
141 142 1.346395 TGGCGTTTCTAAGAAGGCTGA 59.654 47.619 0.00 0.00 39.60 4.26
142 143 1.808411 TGGCGTTTCTAAGAAGGCTG 58.192 50.000 0.00 0.00 39.60 4.85
143 144 2.427506 CTTGGCGTTTCTAAGAAGGCT 58.572 47.619 7.71 0.00 39.60 4.58
144 145 1.468914 CCTTGGCGTTTCTAAGAAGGC 59.531 52.381 0.00 0.00 35.52 4.35
145 146 2.779506 ACCTTGGCGTTTCTAAGAAGG 58.220 47.619 0.00 0.00 35.52 3.46
146 147 5.934935 TTTACCTTGGCGTTTCTAAGAAG 57.065 39.130 0.00 0.00 35.52 2.85
147 148 6.696441 TTTTTACCTTGGCGTTTCTAAGAA 57.304 33.333 0.00 0.00 35.52 2.52
167 168 3.808265 GCCCTGGTTACCGAGTAGTTTTT 60.808 47.826 0.00 0.00 0.00 1.94
168 169 2.289882 GCCCTGGTTACCGAGTAGTTTT 60.290 50.000 0.00 0.00 0.00 2.43
169 170 1.277273 GCCCTGGTTACCGAGTAGTTT 59.723 52.381 0.00 0.00 0.00 2.66
170 171 0.900421 GCCCTGGTTACCGAGTAGTT 59.100 55.000 0.00 0.00 0.00 2.24
171 172 0.974525 GGCCCTGGTTACCGAGTAGT 60.975 60.000 0.00 0.00 0.00 2.73
172 173 1.821258 GGCCCTGGTTACCGAGTAG 59.179 63.158 0.00 0.00 0.00 2.57
173 174 4.039042 GGCCCTGGTTACCGAGTA 57.961 61.111 0.00 0.00 0.00 2.59
178 179 3.060000 GTTGCGGCCCTGGTTACC 61.060 66.667 0.00 0.00 0.00 2.85
179 180 3.428282 CGTTGCGGCCCTGGTTAC 61.428 66.667 0.00 0.00 0.00 2.50
189 190 0.027979 CATATGTCTTGGCGTTGCGG 59.972 55.000 0.00 0.00 0.00 5.69
190 191 0.027979 CCATATGTCTTGGCGTTGCG 59.972 55.000 1.24 0.00 0.00 4.85
191 192 3.924238 CCATATGTCTTGGCGTTGC 57.076 52.632 1.24 0.00 0.00 4.17
197 198 3.848272 AACAAACGCCATATGTCTTGG 57.152 42.857 1.24 0.00 37.31 3.61
198 199 5.046910 AGAAACAAACGCCATATGTCTTG 57.953 39.130 1.24 2.47 0.00 3.02
199 200 5.460646 CAAGAAACAAACGCCATATGTCTT 58.539 37.500 1.24 0.00 0.00 3.01
200 201 4.082787 CCAAGAAACAAACGCCATATGTCT 60.083 41.667 1.24 0.00 0.00 3.41
201 202 4.165779 CCAAGAAACAAACGCCATATGTC 58.834 43.478 1.24 0.00 0.00 3.06
202 203 3.572255 ACCAAGAAACAAACGCCATATGT 59.428 39.130 1.24 0.00 0.00 2.29
203 204 4.165779 GACCAAGAAACAAACGCCATATG 58.834 43.478 0.00 0.00 0.00 1.78
204 205 3.823873 TGACCAAGAAACAAACGCCATAT 59.176 39.130 0.00 0.00 0.00 1.78
205 206 3.215151 TGACCAAGAAACAAACGCCATA 58.785 40.909 0.00 0.00 0.00 2.74
206 207 2.028130 TGACCAAGAAACAAACGCCAT 58.972 42.857 0.00 0.00 0.00 4.40
207 208 1.403679 CTGACCAAGAAACAAACGCCA 59.596 47.619 0.00 0.00 0.00 5.69
208 209 1.673920 TCTGACCAAGAAACAAACGCC 59.326 47.619 0.00 0.00 29.54 5.68
209 210 3.414549 TTCTGACCAAGAAACAAACGC 57.585 42.857 0.00 0.00 42.09 4.84
217 218 1.673920 GTTGGCGTTTCTGACCAAGAA 59.326 47.619 0.00 0.00 43.85 2.52
218 219 1.305201 GTTGGCGTTTCTGACCAAGA 58.695 50.000 0.00 0.00 43.85 3.02
219 220 0.041312 CGTTGGCGTTTCTGACCAAG 60.041 55.000 0.00 0.00 43.85 3.61
220 221 2.018544 CGTTGGCGTTTCTGACCAA 58.981 52.632 0.00 0.00 41.08 3.67
221 222 2.539338 GCGTTGGCGTTTCTGACCA 61.539 57.895 0.00 0.00 40.81 4.02
222 223 2.251371 GCGTTGGCGTTTCTGACC 59.749 61.111 0.00 0.00 40.81 4.02
223 224 0.947180 TAGGCGTTGGCGTTTCTGAC 60.947 55.000 0.00 0.00 41.24 3.51
224 225 0.036765 ATAGGCGTTGGCGTTTCTGA 60.037 50.000 0.00 0.00 41.24 3.27
225 226 0.096976 CATAGGCGTTGGCGTTTCTG 59.903 55.000 0.00 0.00 41.24 3.02
226 227 1.024579 CCATAGGCGTTGGCGTTTCT 61.025 55.000 0.00 0.00 41.24 2.52
227 228 1.427819 CCATAGGCGTTGGCGTTTC 59.572 57.895 0.00 0.00 41.24 2.78
228 229 3.585856 CCATAGGCGTTGGCGTTT 58.414 55.556 0.00 0.00 41.24 3.60
238 239 1.365699 TTCGAAGAAACGCCATAGGC 58.634 50.000 0.00 0.00 45.90 3.93
239 240 2.222729 CGTTTCGAAGAAACGCCATAGG 60.223 50.000 27.19 7.35 44.87 2.57
240 241 3.021355 CGTTTCGAAGAAACGCCATAG 57.979 47.619 27.19 7.93 44.87 2.23
253 254 3.528594 GAGATAGCTCGCGTTTCGA 57.471 52.632 5.77 0.00 46.29 3.71
262 263 0.031449 AAGAAGCGCCGAGATAGCTC 59.969 55.000 2.29 0.00 40.78 4.09
263 264 0.461961 AAAGAAGCGCCGAGATAGCT 59.538 50.000 2.29 0.00 43.90 3.32
264 265 0.579156 CAAAGAAGCGCCGAGATAGC 59.421 55.000 2.29 0.00 0.00 2.97
265 266 1.927895 ACAAAGAAGCGCCGAGATAG 58.072 50.000 2.29 0.00 0.00 2.08
266 267 1.999735 CAACAAAGAAGCGCCGAGATA 59.000 47.619 2.29 0.00 0.00 1.98
267 268 0.798776 CAACAAAGAAGCGCCGAGAT 59.201 50.000 2.29 0.00 0.00 2.75
268 269 1.227999 CCAACAAAGAAGCGCCGAGA 61.228 55.000 2.29 0.00 0.00 4.04
269 270 1.207593 CCAACAAAGAAGCGCCGAG 59.792 57.895 2.29 0.00 0.00 4.63
270 271 0.605319 ATCCAACAAAGAAGCGCCGA 60.605 50.000 2.29 0.00 0.00 5.54
271 272 1.062587 CTATCCAACAAAGAAGCGCCG 59.937 52.381 2.29 0.00 0.00 6.46
272 273 2.356135 TCTATCCAACAAAGAAGCGCC 58.644 47.619 2.29 0.00 0.00 6.53
273 274 4.008539 CTTCTATCCAACAAAGAAGCGC 57.991 45.455 0.00 0.00 39.68 5.92
276 277 6.112058 AGCTAGCTTCTATCCAACAAAGAAG 58.888 40.000 12.68 6.90 45.85 2.85
277 278 6.054860 AGCTAGCTTCTATCCAACAAAGAA 57.945 37.500 12.68 0.00 0.00 2.52
278 279 5.683876 AGCTAGCTTCTATCCAACAAAGA 57.316 39.130 12.68 0.00 0.00 2.52
279 280 5.755861 GGTAGCTAGCTTCTATCCAACAAAG 59.244 44.000 24.88 0.00 0.00 2.77
280 281 5.425539 AGGTAGCTAGCTTCTATCCAACAAA 59.574 40.000 24.88 0.00 0.00 2.83
281 282 4.962995 AGGTAGCTAGCTTCTATCCAACAA 59.037 41.667 24.88 0.00 0.00 2.83
282 283 4.547671 AGGTAGCTAGCTTCTATCCAACA 58.452 43.478 24.88 0.00 0.00 3.33
283 284 4.320641 CGAGGTAGCTAGCTTCTATCCAAC 60.321 50.000 24.88 11.99 33.58 3.77
284 285 3.821600 CGAGGTAGCTAGCTTCTATCCAA 59.178 47.826 24.88 0.00 33.58 3.53
285 286 3.413327 CGAGGTAGCTAGCTTCTATCCA 58.587 50.000 24.88 0.00 33.58 3.41
286 287 2.750712 CCGAGGTAGCTAGCTTCTATCC 59.249 54.545 24.88 16.55 33.58 2.59
287 288 2.162809 GCCGAGGTAGCTAGCTTCTATC 59.837 54.545 24.88 17.53 33.58 2.08
288 289 2.164338 GCCGAGGTAGCTAGCTTCTAT 58.836 52.381 24.88 10.78 33.58 1.98
289 290 1.133884 TGCCGAGGTAGCTAGCTTCTA 60.134 52.381 24.88 1.07 33.58 2.10
290 291 0.395862 TGCCGAGGTAGCTAGCTTCT 60.396 55.000 24.88 20.11 33.58 2.85
291 292 0.676736 ATGCCGAGGTAGCTAGCTTC 59.323 55.000 24.88 18.24 33.58 3.86
292 293 1.123928 AATGCCGAGGTAGCTAGCTT 58.876 50.000 24.88 4.46 33.58 3.74
293 294 0.390860 CAATGCCGAGGTAGCTAGCT 59.609 55.000 24.94 24.94 36.62 3.32
294 295 1.224722 GCAATGCCGAGGTAGCTAGC 61.225 60.000 15.19 15.19 0.00 3.42
295 296 0.390860 AGCAATGCCGAGGTAGCTAG 59.609 55.000 0.00 0.00 0.00 3.42
296 297 1.699730 TAGCAATGCCGAGGTAGCTA 58.300 50.000 0.00 0.00 33.83 3.32
297 298 1.051812 ATAGCAATGCCGAGGTAGCT 58.948 50.000 0.00 0.00 36.20 3.32
298 299 1.151668 CATAGCAATGCCGAGGTAGC 58.848 55.000 0.00 0.00 0.00 3.58
299 300 2.533266 ACATAGCAATGCCGAGGTAG 57.467 50.000 0.00 0.00 36.50 3.18
300 301 2.560504 CAACATAGCAATGCCGAGGTA 58.439 47.619 0.00 0.00 36.50 3.08
301 302 1.382522 CAACATAGCAATGCCGAGGT 58.617 50.000 0.00 0.00 36.50 3.85
302 303 0.664761 CCAACATAGCAATGCCGAGG 59.335 55.000 0.00 0.00 36.50 4.63
303 304 1.331756 GTCCAACATAGCAATGCCGAG 59.668 52.381 0.00 0.00 36.50 4.63
304 305 1.339535 TGTCCAACATAGCAATGCCGA 60.340 47.619 0.00 0.00 36.50 5.54
305 306 1.064505 CTGTCCAACATAGCAATGCCG 59.935 52.381 0.00 0.00 36.50 5.69
306 307 2.368439 TCTGTCCAACATAGCAATGCC 58.632 47.619 0.00 0.00 36.50 4.40
307 308 4.168760 GTTTCTGTCCAACATAGCAATGC 58.831 43.478 0.00 0.00 36.50 3.56
308 309 4.406069 CGTTTCTGTCCAACATAGCAATG 58.594 43.478 0.00 0.00 39.17 2.82
309 310 3.119849 GCGTTTCTGTCCAACATAGCAAT 60.120 43.478 0.00 0.00 0.00 3.56
310 311 2.225491 GCGTTTCTGTCCAACATAGCAA 59.775 45.455 0.00 0.00 0.00 3.91
311 312 1.804151 GCGTTTCTGTCCAACATAGCA 59.196 47.619 0.00 0.00 0.00 3.49
312 313 1.130561 GGCGTTTCTGTCCAACATAGC 59.869 52.381 0.00 0.00 0.00 2.97
313 314 1.393539 CGGCGTTTCTGTCCAACATAG 59.606 52.381 0.00 0.00 0.00 2.23
314 315 1.434555 CGGCGTTTCTGTCCAACATA 58.565 50.000 0.00 0.00 0.00 2.29
315 316 1.852067 GCGGCGTTTCTGTCCAACAT 61.852 55.000 9.37 0.00 0.00 2.71
316 317 2.539338 GCGGCGTTTCTGTCCAACA 61.539 57.895 9.37 0.00 0.00 3.33
317 318 2.251371 GCGGCGTTTCTGTCCAAC 59.749 61.111 9.37 0.00 0.00 3.77
318 319 3.342627 CGCGGCGTTTCTGTCCAA 61.343 61.111 15.36 0.00 0.00 3.53
331 332 3.261951 CAACGTCATAGCCCGCGG 61.262 66.667 21.04 21.04 0.00 6.46
332 333 2.947118 TAGCAACGTCATAGCCCGCG 62.947 60.000 0.00 0.00 0.00 6.46
333 334 0.808453 TTAGCAACGTCATAGCCCGC 60.808 55.000 0.00 0.00 0.00 6.13
334 335 1.647346 TTTAGCAACGTCATAGCCCG 58.353 50.000 0.00 0.00 0.00 6.13
335 336 3.687698 TCTTTTTAGCAACGTCATAGCCC 59.312 43.478 0.00 0.00 0.00 5.19
336 337 4.392138 ACTCTTTTTAGCAACGTCATAGCC 59.608 41.667 0.00 0.00 0.00 3.93
337 338 5.120208 TGACTCTTTTTAGCAACGTCATAGC 59.880 40.000 0.00 0.00 0.00 2.97
338 339 6.586463 TCTGACTCTTTTTAGCAACGTCATAG 59.414 38.462 0.00 0.00 30.62 2.23
339 340 6.452242 TCTGACTCTTTTTAGCAACGTCATA 58.548 36.000 0.00 0.00 30.62 2.15
340 341 5.297547 TCTGACTCTTTTTAGCAACGTCAT 58.702 37.500 0.00 0.00 30.62 3.06
341 342 4.689071 TCTGACTCTTTTTAGCAACGTCA 58.311 39.130 0.00 0.00 0.00 4.35
342 343 5.443431 CGATCTGACTCTTTTTAGCAACGTC 60.443 44.000 0.00 0.00 0.00 4.34
343 344 4.386049 CGATCTGACTCTTTTTAGCAACGT 59.614 41.667 0.00 0.00 0.00 3.99
344 345 4.386049 ACGATCTGACTCTTTTTAGCAACG 59.614 41.667 0.00 0.00 0.00 4.10
345 346 5.405571 TCACGATCTGACTCTTTTTAGCAAC 59.594 40.000 0.00 0.00 0.00 4.17
346 347 5.538118 TCACGATCTGACTCTTTTTAGCAA 58.462 37.500 0.00 0.00 0.00 3.91
347 348 5.134202 TCACGATCTGACTCTTTTTAGCA 57.866 39.130 0.00 0.00 0.00 3.49
348 349 6.467723 TTTCACGATCTGACTCTTTTTAGC 57.532 37.500 0.00 0.00 0.00 3.09
349 350 9.360093 AGTATTTCACGATCTGACTCTTTTTAG 57.640 33.333 0.00 0.00 0.00 1.85
350 351 9.706691 AAGTATTTCACGATCTGACTCTTTTTA 57.293 29.630 0.00 0.00 0.00 1.52
351 352 8.608844 AAGTATTTCACGATCTGACTCTTTTT 57.391 30.769 0.00 0.00 0.00 1.94
352 353 8.608844 AAAGTATTTCACGATCTGACTCTTTT 57.391 30.769 0.00 0.00 27.08 2.27
373 374 9.683069 GTCACAAAATGAACTTGATATGAAAGT 57.317 29.630 0.00 0.00 39.72 2.66
374 375 9.681692 TGTCACAAAATGAACTTGATATGAAAG 57.318 29.630 0.00 0.00 39.72 2.62
377 378 9.681692 CTTTGTCACAAAATGAACTTGATATGA 57.318 29.630 4.13 0.00 39.72 2.15
378 379 9.467258 ACTTTGTCACAAAATGAACTTGATATG 57.533 29.630 4.13 0.00 39.72 1.78
380 381 9.868277 AAACTTTGTCACAAAATGAACTTGATA 57.132 25.926 4.13 0.00 39.72 2.15
381 382 8.776376 AAACTTTGTCACAAAATGAACTTGAT 57.224 26.923 4.13 0.00 39.72 2.57
382 383 9.868277 ATAAACTTTGTCACAAAATGAACTTGA 57.132 25.926 4.13 0.00 39.72 3.02
392 393 9.308318 GGCTCTTTTAATAAACTTTGTCACAAA 57.692 29.630 2.24 2.24 0.00 2.83
393 394 8.470805 TGGCTCTTTTAATAAACTTTGTCACAA 58.529 29.630 0.00 0.00 0.00 3.33
394 395 8.001881 TGGCTCTTTTAATAAACTTTGTCACA 57.998 30.769 0.00 0.00 0.00 3.58
410 411 8.523658 GGACTTTTTCACTATTATGGCTCTTTT 58.476 33.333 0.00 0.00 0.00 2.27
411 412 7.148239 CGGACTTTTTCACTATTATGGCTCTTT 60.148 37.037 0.00 0.00 0.00 2.52
412 413 6.316390 CGGACTTTTTCACTATTATGGCTCTT 59.684 38.462 0.00 0.00 0.00 2.85
413 414 5.817816 CGGACTTTTTCACTATTATGGCTCT 59.182 40.000 0.00 0.00 0.00 4.09
414 415 5.504173 GCGGACTTTTTCACTATTATGGCTC 60.504 44.000 0.00 0.00 0.00 4.70
415 416 4.335594 GCGGACTTTTTCACTATTATGGCT 59.664 41.667 0.00 0.00 0.00 4.75
416 417 4.095782 TGCGGACTTTTTCACTATTATGGC 59.904 41.667 0.00 0.00 0.00 4.40
417 418 5.584649 TCTGCGGACTTTTTCACTATTATGG 59.415 40.000 0.00 0.00 0.00 2.74
418 419 6.313905 ACTCTGCGGACTTTTTCACTATTATG 59.686 38.462 0.00 0.00 0.00 1.90
419 420 6.407202 ACTCTGCGGACTTTTTCACTATTAT 58.593 36.000 0.00 0.00 0.00 1.28
420 421 5.790593 ACTCTGCGGACTTTTTCACTATTA 58.209 37.500 0.00 0.00 0.00 0.98
421 422 4.642429 ACTCTGCGGACTTTTTCACTATT 58.358 39.130 0.00 0.00 0.00 1.73
422 423 4.246458 GACTCTGCGGACTTTTTCACTAT 58.754 43.478 0.00 0.00 0.00 2.12
423 424 3.069016 TGACTCTGCGGACTTTTTCACTA 59.931 43.478 0.00 0.00 0.00 2.74
424 425 2.158957 TGACTCTGCGGACTTTTTCACT 60.159 45.455 0.00 0.00 0.00 3.41
425 426 2.210116 TGACTCTGCGGACTTTTTCAC 58.790 47.619 0.00 0.00 0.00 3.18
426 427 2.613026 TGACTCTGCGGACTTTTTCA 57.387 45.000 0.00 0.00 0.00 2.69
427 428 2.349912 GCTTGACTCTGCGGACTTTTTC 60.350 50.000 0.00 0.00 0.00 2.29
428 429 1.604278 GCTTGACTCTGCGGACTTTTT 59.396 47.619 0.00 0.00 0.00 1.94
429 430 1.230324 GCTTGACTCTGCGGACTTTT 58.770 50.000 0.00 0.00 0.00 2.27
430 431 0.603975 GGCTTGACTCTGCGGACTTT 60.604 55.000 0.00 0.00 0.00 2.66
431 432 1.004440 GGCTTGACTCTGCGGACTT 60.004 57.895 0.00 0.00 0.00 3.01
432 433 2.659610 GGCTTGACTCTGCGGACT 59.340 61.111 0.00 0.00 0.00 3.85
433 434 2.435059 GGGCTTGACTCTGCGGAC 60.435 66.667 0.00 0.00 0.00 4.79
434 435 2.798445 TAGGGGCTTGACTCTGCGGA 62.798 60.000 0.00 0.00 0.00 5.54
435 436 2.359169 TAGGGGCTTGACTCTGCGG 61.359 63.158 0.00 0.00 0.00 5.69
436 437 1.153549 GTAGGGGCTTGACTCTGCG 60.154 63.158 0.00 0.00 0.00 5.18
437 438 0.176910 GAGTAGGGGCTTGACTCTGC 59.823 60.000 6.13 0.00 37.27 4.26
438 439 1.859302 AGAGTAGGGGCTTGACTCTG 58.141 55.000 12.70 0.00 46.36 3.35
440 441 1.478916 GACAGAGTAGGGGCTTGACTC 59.521 57.143 5.45 5.45 39.96 3.36
441 442 1.562783 GACAGAGTAGGGGCTTGACT 58.437 55.000 0.00 0.00 0.00 3.41
442 443 0.173708 CGACAGAGTAGGGGCTTGAC 59.826 60.000 0.00 0.00 0.00 3.18
443 444 0.039180 TCGACAGAGTAGGGGCTTGA 59.961 55.000 0.00 0.00 0.00 3.02
444 445 0.457851 CTCGACAGAGTAGGGGCTTG 59.542 60.000 0.00 0.00 39.60 4.01
445 446 0.331954 TCTCGACAGAGTAGGGGCTT 59.668 55.000 0.00 0.00 44.65 4.35
446 447 0.394625 GTCTCGACAGAGTAGGGGCT 60.395 60.000 0.00 0.00 44.65 5.19
447 448 1.716826 CGTCTCGACAGAGTAGGGGC 61.717 65.000 0.00 0.00 44.65 5.80
448 449 1.716826 GCGTCTCGACAGAGTAGGGG 61.717 65.000 0.00 0.00 44.65 4.79
449 450 1.722677 GCGTCTCGACAGAGTAGGG 59.277 63.158 0.00 0.00 44.65 3.53
450 451 1.348938 CGCGTCTCGACAGAGTAGG 59.651 63.158 0.00 0.00 44.65 3.18
451 452 1.297012 GCGCGTCTCGACAGAGTAG 60.297 63.158 8.43 0.00 44.65 2.57
452 453 1.366854 ATGCGCGTCTCGACAGAGTA 61.367 55.000 8.43 0.00 44.65 2.59
453 454 2.691771 ATGCGCGTCTCGACAGAGT 61.692 57.895 8.43 0.00 44.65 3.24
454 455 2.101185 ATGCGCGTCTCGACAGAG 59.899 61.111 8.43 0.00 45.69 3.35
455 456 2.202479 CATGCGCGTCTCGACAGA 60.202 61.111 8.43 0.00 41.67 3.41
456 457 3.906649 GCATGCGCGTCTCGACAG 61.907 66.667 8.43 0.00 41.67 3.51
457 458 3.987863 ATGCATGCGCGTCTCGACA 62.988 57.895 14.09 0.00 42.97 4.35
458 459 3.257561 ATGCATGCGCGTCTCGAC 61.258 61.111 14.09 0.00 42.97 4.20
459 460 3.256833 CATGCATGCGCGTCTCGA 61.257 61.111 14.93 0.00 42.97 4.04
460 461 4.932591 GCATGCATGCGCGTCTCG 62.933 66.667 33.99 3.05 44.67 4.04
469 470 2.255994 TTTCGTGCCTCGCATGCATG 62.256 55.000 22.70 22.70 44.29 4.06
470 471 1.985447 CTTTCGTGCCTCGCATGCAT 61.985 55.000 19.57 0.00 44.29 3.96
471 472 2.667874 TTTCGTGCCTCGCATGCA 60.668 55.556 19.57 4.02 44.29 3.96
472 473 1.709147 ATCTTTCGTGCCTCGCATGC 61.709 55.000 7.91 7.91 44.29 4.06
473 474 0.027194 CATCTTTCGTGCCTCGCATG 59.973 55.000 0.00 0.00 45.79 4.06
474 475 1.709147 GCATCTTTCGTGCCTCGCAT 61.709 55.000 0.00 0.00 41.91 4.73
475 476 2.390599 GCATCTTTCGTGCCTCGCA 61.391 57.895 0.00 0.00 39.67 5.10
476 477 1.709147 ATGCATCTTTCGTGCCTCGC 61.709 55.000 0.00 0.00 41.83 5.03
477 478 0.302890 GATGCATCTTTCGTGCCTCG 59.697 55.000 19.70 0.00 41.83 4.63
478 479 0.302890 CGATGCATCTTTCGTGCCTC 59.697 55.000 23.73 0.00 41.83 4.70
479 480 1.091771 CCGATGCATCTTTCGTGCCT 61.092 55.000 23.73 0.00 41.83 4.75
554 566 1.741770 GTCATGTCACTCACGGGCC 60.742 63.158 0.00 0.00 0.00 5.80
555 567 2.094659 CGTCATGTCACTCACGGGC 61.095 63.158 0.00 0.00 0.00 6.13
556 568 0.732880 GTCGTCATGTCACTCACGGG 60.733 60.000 2.98 0.00 0.00 5.28
557 569 1.065572 CGTCGTCATGTCACTCACGG 61.066 60.000 2.98 0.00 0.00 4.94
636 648 3.243434 GCTACGCATCTGGCTCTTAAGTA 60.243 47.826 1.63 0.00 41.67 2.24
658 670 1.193203 GCACATATTGGTCGATCAGCG 59.807 52.381 0.00 0.00 42.69 5.18
678 690 2.484264 CCGCCAAAGAAACTACTCCAAG 59.516 50.000 0.00 0.00 0.00 3.61
679 691 2.500229 CCGCCAAAGAAACTACTCCAA 58.500 47.619 0.00 0.00 0.00 3.53
680 692 1.880646 GCCGCCAAAGAAACTACTCCA 60.881 52.381 0.00 0.00 0.00 3.86
681 693 0.803117 GCCGCCAAAGAAACTACTCC 59.197 55.000 0.00 0.00 0.00 3.85
682 694 0.803117 GGCCGCCAAAGAAACTACTC 59.197 55.000 3.91 0.00 0.00 2.59
683 695 0.953960 CGGCCGCCAAAGAAACTACT 60.954 55.000 14.67 0.00 0.00 2.57
684 696 1.232621 ACGGCCGCCAAAGAAACTAC 61.233 55.000 28.58 0.00 0.00 2.73
690 702 2.668212 CTCAACGGCCGCCAAAGA 60.668 61.111 28.58 14.88 0.00 2.52
764 778 2.664851 TTGCACGAAGCCACGAGG 60.665 61.111 7.12 0.00 44.83 4.63
817 834 1.538687 GCATCCATGGCCCCTAATGC 61.539 60.000 15.64 15.64 33.53 3.56
818 835 0.178955 TGCATCCATGGCCCCTAATG 60.179 55.000 6.96 5.64 0.00 1.90
819 836 0.788383 ATGCATCCATGGCCCCTAAT 59.212 50.000 6.96 0.00 0.00 1.73
820 837 0.178955 CATGCATCCATGGCCCCTAA 60.179 55.000 6.96 0.00 44.07 2.69
821 838 1.461589 CATGCATCCATGGCCCCTA 59.538 57.895 6.96 0.00 44.07 3.53
822 839 2.200370 CATGCATCCATGGCCCCT 59.800 61.111 6.96 0.00 44.07 4.79
842 859 4.150980 CGGACTACACTCGTAATGCAAAAA 59.849 41.667 0.00 0.00 0.00 1.94
843 860 3.676172 CGGACTACACTCGTAATGCAAAA 59.324 43.478 0.00 0.00 0.00 2.44
844 861 3.247442 CGGACTACACTCGTAATGCAAA 58.753 45.455 0.00 0.00 0.00 3.68
845 862 2.416296 CCGGACTACACTCGTAATGCAA 60.416 50.000 0.00 0.00 0.00 4.08
846 863 1.133598 CCGGACTACACTCGTAATGCA 59.866 52.381 0.00 0.00 0.00 3.96
847 864 1.535437 CCCGGACTACACTCGTAATGC 60.535 57.143 0.73 0.00 0.00 3.56
848 865 2.019249 TCCCGGACTACACTCGTAATG 58.981 52.381 0.73 0.00 0.00 1.90
849 866 2.019984 GTCCCGGACTACACTCGTAAT 58.980 52.381 10.59 0.00 0.00 1.89
850 867 1.003580 AGTCCCGGACTACACTCGTAA 59.996 52.381 19.09 0.00 41.51 3.18
851 868 0.615331 AGTCCCGGACTACACTCGTA 59.385 55.000 19.09 0.00 41.51 3.43
852 869 0.676151 GAGTCCCGGACTACACTCGT 60.676 60.000 20.49 0.00 43.53 4.18
853 870 1.375098 GGAGTCCCGGACTACACTCG 61.375 65.000 23.25 0.00 43.53 4.18
854 871 2.491291 GGAGTCCCGGACTACACTC 58.509 63.158 23.25 9.71 43.53 3.51
855 872 4.759893 GGAGTCCCGGACTACACT 57.240 61.111 23.25 0.11 43.53 3.55
865 882 0.546598 ATGATTGAACCCGGAGTCCC 59.453 55.000 0.73 0.00 0.00 4.46
866 883 1.668419 CATGATTGAACCCGGAGTCC 58.332 55.000 0.73 0.00 0.00 3.85
867 884 1.017387 GCATGATTGAACCCGGAGTC 58.983 55.000 0.73 0.00 0.00 3.36
868 885 0.394352 GGCATGATTGAACCCGGAGT 60.394 55.000 0.73 0.00 0.00 3.85
869 886 0.394216 TGGCATGATTGAACCCGGAG 60.394 55.000 0.73 0.00 0.00 4.63
914 960 9.630098 CAAGAATAACCTAAGAGTTAACACGTA 57.370 33.333 8.61 3.51 35.90 3.57
916 962 7.117236 TGCAAGAATAACCTAAGAGTTAACACG 59.883 37.037 8.61 0.00 35.90 4.49
927 979 5.105797 CCAACTGCATGCAAGAATAACCTAA 60.106 40.000 22.88 0.00 0.00 2.69
975 1035 2.413765 GTCGATGGAGGGAGTCGC 59.586 66.667 0.00 0.00 35.48 5.19
1077 1140 8.460428 GCTGCTAACTCTTATACCGTCTTATAT 58.540 37.037 0.00 0.00 0.00 0.86
1202 1280 1.277273 TCTGCTTGATGACCACTCTGG 59.723 52.381 0.00 0.00 45.02 3.86
1203 1281 2.619147 CTCTGCTTGATGACCACTCTG 58.381 52.381 0.00 0.00 0.00 3.35
1204 1282 1.066286 GCTCTGCTTGATGACCACTCT 60.066 52.381 0.00 0.00 0.00 3.24
1304 1382 5.921408 GCTAGTATTAGTTTCACATCGGAGG 59.079 44.000 0.00 0.00 0.00 4.30
1324 1404 8.904834 TCCTCTGTAAACTAATACAAGAGCTAG 58.095 37.037 0.00 0.00 35.48 3.42
1325 1405 8.818622 TCCTCTGTAAACTAATACAAGAGCTA 57.181 34.615 0.00 0.00 35.48 3.32
1327 1407 8.035984 ACTTCCTCTGTAAACTAATACAAGAGC 58.964 37.037 0.00 0.00 35.48 4.09
1330 1410 9.286946 CGTACTTCCTCTGTAAACTAATACAAG 57.713 37.037 0.00 0.00 35.48 3.16
1331 1411 8.796475 ACGTACTTCCTCTGTAAACTAATACAA 58.204 33.333 0.00 0.00 35.48 2.41
1333 1413 9.709600 GTACGTACTTCCTCTGTAAACTAATAC 57.290 37.037 18.47 0.00 0.00 1.89
1334 1414 9.672673 AGTACGTACTTCCTCTGTAAACTAATA 57.327 33.333 22.45 0.00 31.13 0.98
1335 1415 8.572855 AGTACGTACTTCCTCTGTAAACTAAT 57.427 34.615 22.45 0.00 31.13 1.73
1336 1416 7.986085 AGTACGTACTTCCTCTGTAAACTAA 57.014 36.000 22.45 0.00 31.13 2.24
1337 1417 8.314751 AGTAGTACGTACTTCCTCTGTAAACTA 58.685 37.037 31.58 7.23 39.06 2.24
1338 1418 7.164803 AGTAGTACGTACTTCCTCTGTAAACT 58.835 38.462 31.58 20.82 39.06 2.66
1339 1419 7.118390 TGAGTAGTACGTACTTCCTCTGTAAAC 59.882 40.741 32.67 22.94 42.48 2.01
1340 1420 7.161404 TGAGTAGTACGTACTTCCTCTGTAAA 58.839 38.462 32.67 20.99 42.48 2.01
1341 1421 6.701340 TGAGTAGTACGTACTTCCTCTGTAA 58.299 40.000 32.67 21.22 42.48 2.41
1342 1422 6.071108 ACTGAGTAGTACGTACTTCCTCTGTA 60.071 42.308 34.91 23.76 42.48 2.74
1345 1425 5.419239 ACTGAGTAGTACGTACTTCCTCT 57.581 43.478 32.67 25.29 42.48 3.69
1347 1427 6.648192 ACATACTGAGTAGTACGTACTTCCT 58.352 40.000 31.58 25.54 42.48 3.36
1348 1428 6.917217 ACATACTGAGTAGTACGTACTTCC 57.083 41.667 31.58 21.76 42.48 3.46
1350 1430 8.341173 GCATTACATACTGAGTAGTACGTACTT 58.659 37.037 31.58 16.31 42.48 2.24
1351 1431 7.714377 AGCATTACATACTGAGTAGTACGTACT 59.286 37.037 29.62 29.62 45.34 2.73
1352 1432 7.859598 AGCATTACATACTGAGTAGTACGTAC 58.140 38.462 18.10 18.10 41.92 3.67
1353 1433 7.095899 CGAGCATTACATACTGAGTAGTACGTA 60.096 40.741 0.00 0.00 41.92 3.57
1354 1434 6.292757 CGAGCATTACATACTGAGTAGTACGT 60.293 42.308 0.00 0.00 41.92 3.57
1355 1435 6.072098 CGAGCATTACATACTGAGTAGTACG 58.928 44.000 0.00 0.00 41.92 3.67
1356 1436 7.187244 TCGAGCATTACATACTGAGTAGTAC 57.813 40.000 0.00 0.00 41.92 2.73
1385 1465 1.866880 GCGTGCGTAGGGTATGTAAGG 60.867 57.143 0.00 0.00 0.00 2.69
1501 1602 0.608640 CCGAGGTAGCAGGTGAAGTT 59.391 55.000 0.00 0.00 0.00 2.66
1536 1637 2.424302 GCGTACACCCACCACAGT 59.576 61.111 0.00 0.00 0.00 3.55
1582 1683 1.303888 TCTCCGGCAGGTCGTACTT 60.304 57.895 1.81 0.00 39.05 2.24
1626 1727 2.745698 CACCAGTGGCAGAGCAGA 59.254 61.111 9.78 0.00 0.00 4.26
1675 1776 4.886121 GACGTCGAATCCCCGCCC 62.886 72.222 0.00 0.00 0.00 6.13
1715 1822 1.031571 ATGTAGGTTGGCATGGTGCG 61.032 55.000 0.00 0.00 46.21 5.34
1745 1852 3.130693 GGATGTTCTACGGAGTACTTGCT 59.869 47.826 5.96 0.00 45.11 3.91
1747 1854 4.713824 TGGATGTTCTACGGAGTACTTG 57.286 45.455 5.96 0.00 45.11 3.16
1753 1860 5.874810 TCTCAAAAATGGATGTTCTACGGAG 59.125 40.000 0.00 0.00 0.00 4.63
1755 1862 5.411361 TGTCTCAAAAATGGATGTTCTACGG 59.589 40.000 0.00 0.00 0.00 4.02
1756 1863 6.480524 TGTCTCAAAAATGGATGTTCTACG 57.519 37.500 0.00 0.00 0.00 3.51
1772 1879 9.685828 CCCTTCGTTTAAAATTATTTGTCTCAA 57.314 29.630 0.00 0.00 0.00 3.02
1773 1880 9.069082 TCCCTTCGTTTAAAATTATTTGTCTCA 57.931 29.630 0.00 0.00 0.00 3.27
1774 1881 9.556030 CTCCCTTCGTTTAAAATTATTTGTCTC 57.444 33.333 0.00 0.00 0.00 3.36
1775 1882 9.074576 ACTCCCTTCGTTTAAAATTATTTGTCT 57.925 29.630 0.00 0.00 0.00 3.41
1781 1888 9.729281 TGACTTACTCCCTTCGTTTAAAATTAT 57.271 29.630 0.00 0.00 0.00 1.28
1782 1889 9.729281 ATGACTTACTCCCTTCGTTTAAAATTA 57.271 29.630 0.00 0.00 0.00 1.40
1783 1890 8.631480 ATGACTTACTCCCTTCGTTTAAAATT 57.369 30.769 0.00 0.00 0.00 1.82
1784 1891 8.512138 CAATGACTTACTCCCTTCGTTTAAAAT 58.488 33.333 0.00 0.00 0.00 1.82
1785 1892 7.716123 TCAATGACTTACTCCCTTCGTTTAAAA 59.284 33.333 0.00 0.00 0.00 1.52
1786 1893 7.218614 TCAATGACTTACTCCCTTCGTTTAAA 58.781 34.615 0.00 0.00 0.00 1.52
1787 1894 6.761312 TCAATGACTTACTCCCTTCGTTTAA 58.239 36.000 0.00 0.00 0.00 1.52
1788 1895 6.349243 TCAATGACTTACTCCCTTCGTTTA 57.651 37.500 0.00 0.00 0.00 2.01
1789 1896 5.223449 TCAATGACTTACTCCCTTCGTTT 57.777 39.130 0.00 0.00 0.00 3.60
1790 1897 4.322801 CCTCAATGACTTACTCCCTTCGTT 60.323 45.833 0.00 0.00 0.00 3.85
1791 1898 3.195825 CCTCAATGACTTACTCCCTTCGT 59.804 47.826 0.00 0.00 0.00 3.85
1792 1899 3.447586 TCCTCAATGACTTACTCCCTTCG 59.552 47.826 0.00 0.00 0.00 3.79
1793 1900 5.422214 TTCCTCAATGACTTACTCCCTTC 57.578 43.478 0.00 0.00 0.00 3.46
1794 1901 7.570607 AGATATTCCTCAATGACTTACTCCCTT 59.429 37.037 0.00 0.00 0.00 3.95
1795 1902 7.079048 AGATATTCCTCAATGACTTACTCCCT 58.921 38.462 0.00 0.00 0.00 4.20
1796 1903 7.309770 AGATATTCCTCAATGACTTACTCCC 57.690 40.000 0.00 0.00 0.00 4.30
1802 1909 9.717942 GCAGTTATAGATATTCCTCAATGACTT 57.282 33.333 0.00 0.00 0.00 3.01
1803 1910 9.099071 AGCAGTTATAGATATTCCTCAATGACT 57.901 33.333 0.00 0.00 0.00 3.41
1804 1911 9.717942 AAGCAGTTATAGATATTCCTCAATGAC 57.282 33.333 0.00 0.00 0.00 3.06
1808 1915 9.905713 ACAAAAGCAGTTATAGATATTCCTCAA 57.094 29.630 0.00 0.00 0.00 3.02
1809 1916 9.905713 AACAAAAGCAGTTATAGATATTCCTCA 57.094 29.630 0.00 0.00 0.00 3.86
1814 1921 9.289303 CGCAAAACAAAAGCAGTTATAGATATT 57.711 29.630 0.00 0.00 0.00 1.28
1815 1922 8.458843 ACGCAAAACAAAAGCAGTTATAGATAT 58.541 29.630 0.00 0.00 0.00 1.63
1816 1923 7.748683 CACGCAAAACAAAAGCAGTTATAGATA 59.251 33.333 0.00 0.00 0.00 1.98
1828 1935 0.314180 GCACGCACGCAAAACAAAAG 60.314 50.000 0.00 0.00 0.00 2.27
1831 1938 1.871345 CTGCACGCACGCAAAACAA 60.871 52.632 0.00 0.00 42.45 2.83
1832 1939 2.277820 CTGCACGCACGCAAAACA 60.278 55.556 0.00 0.00 42.45 2.83
1833 1940 3.024043 CCTGCACGCACGCAAAAC 61.024 61.111 0.00 0.00 42.45 2.43
1928 2035 2.540769 GCTAGATCGATCGCTCATAGCC 60.541 54.545 23.29 11.86 38.18 3.93
1929 2036 2.715268 GCTAGATCGATCGCTCATAGC 58.285 52.381 20.96 20.96 38.02 2.97
1930 2037 2.849126 GCGCTAGATCGATCGCTCATAG 60.849 54.545 20.02 17.14 43.70 2.23
1960 2067 2.157073 GGTTAGCTCGTTCGACGGC 61.157 63.158 0.00 9.12 42.81 5.68
2055 2169 2.726912 CCAAAAGCTGCGCACACG 60.727 61.111 5.66 0.00 44.07 4.49
2062 2176 1.202452 ACAGAGCAAACCAAAAGCTGC 60.202 47.619 0.00 0.00 39.02 5.25
2063 2177 2.360165 AGACAGAGCAAACCAAAAGCTG 59.640 45.455 0.00 0.00 39.02 4.24
2098 2222 3.245315 CGCAGTACTACGCGCCAC 61.245 66.667 13.76 0.00 45.57 5.01
2103 2227 0.914551 CACATCACGCAGTACTACGC 59.085 55.000 15.40 5.26 41.61 4.42
2104 2228 1.545759 CCACATCACGCAGTACTACG 58.454 55.000 13.95 13.95 41.61 3.51
2105 2229 1.278238 GCCACATCACGCAGTACTAC 58.722 55.000 0.00 0.00 41.61 2.73
2106 2230 0.179148 CGCCACATCACGCAGTACTA 60.179 55.000 0.00 0.00 41.61 1.82
2107 2231 1.446099 CGCCACATCACGCAGTACT 60.446 57.895 0.00 0.00 41.61 2.73
2114 2238 1.999735 AGTACAAATCGCCACATCACG 59.000 47.619 0.00 0.00 0.00 4.35
2118 2242 2.091541 CCCAAGTACAAATCGCCACAT 58.908 47.619 0.00 0.00 0.00 3.21
2138 2262 1.167851 TAAGTGACAGGCATTGCAGC 58.832 50.000 11.39 0.00 0.00 5.25
2149 2281 6.091577 CACTAACCACGCATAATTAAGTGACA 59.908 38.462 16.00 4.90 36.79 3.58
2180 2322 3.941483 CAGGGAAACTGCGTTCTCATTAT 59.059 43.478 0.00 0.00 40.97 1.28
2248 2390 1.092348 GAGAATGGCCACCGTAAACC 58.908 55.000 8.16 0.00 0.00 3.27
2268 2414 1.802365 GATGCCGTTCCGTTTGTTACT 59.198 47.619 0.00 0.00 0.00 2.24
2269 2415 1.532007 TGATGCCGTTCCGTTTGTTAC 59.468 47.619 0.00 0.00 0.00 2.50
2272 2418 0.802494 GATGATGCCGTTCCGTTTGT 59.198 50.000 0.00 0.00 0.00 2.83
2280 2426 9.033481 CAACAAAATTAATATGATGATGCCGTT 57.967 29.630 7.87 0.00 0.00 4.44
2281 2427 7.652909 CCAACAAAATTAATATGATGATGCCGT 59.347 33.333 10.95 0.00 0.00 5.68
2282 2428 7.866898 TCCAACAAAATTAATATGATGATGCCG 59.133 33.333 10.95 0.00 0.00 5.69
2283 2429 8.981647 GTCCAACAAAATTAATATGATGATGCC 58.018 33.333 10.95 0.00 0.00 4.40
2284 2430 8.693504 CGTCCAACAAAATTAATATGATGATGC 58.306 33.333 10.95 0.00 0.00 3.91
2285 2431 9.734620 ACGTCCAACAAAATTAATATGATGATG 57.265 29.630 10.95 9.46 0.00 3.07
2287 2433 9.566530 CAACGTCCAACAAAATTAATATGATGA 57.433 29.630 10.95 2.59 0.00 2.92
2288 2434 8.320295 GCAACGTCCAACAAAATTAATATGATG 58.680 33.333 7.87 6.39 0.00 3.07
2289 2435 8.250332 AGCAACGTCCAACAAAATTAATATGAT 58.750 29.630 7.87 0.00 0.00 2.45
2290 2436 7.598278 AGCAACGTCCAACAAAATTAATATGA 58.402 30.769 7.87 0.00 0.00 2.15
2291 2437 7.810766 AGCAACGTCCAACAAAATTAATATG 57.189 32.000 0.00 0.00 0.00 1.78
2292 2438 8.516234 TGTAGCAACGTCCAACAAAATTAATAT 58.484 29.630 0.00 0.00 0.00 1.28
2293 2439 7.804129 GTGTAGCAACGTCCAACAAAATTAATA 59.196 33.333 0.00 0.00 0.00 0.98
2294 2440 6.639279 GTGTAGCAACGTCCAACAAAATTAAT 59.361 34.615 0.00 0.00 0.00 1.40
2295 2441 5.972382 GTGTAGCAACGTCCAACAAAATTAA 59.028 36.000 0.00 0.00 0.00 1.40
2296 2442 5.066117 TGTGTAGCAACGTCCAACAAAATTA 59.934 36.000 0.00 0.00 0.00 1.40
2297 2443 4.142359 TGTGTAGCAACGTCCAACAAAATT 60.142 37.500 0.00 0.00 0.00 1.82
2298 2444 3.378742 TGTGTAGCAACGTCCAACAAAAT 59.621 39.130 0.00 0.00 0.00 1.82
2299 2445 2.747989 TGTGTAGCAACGTCCAACAAAA 59.252 40.909 0.00 0.00 0.00 2.44
2300 2446 2.353269 CTGTGTAGCAACGTCCAACAAA 59.647 45.455 0.00 0.00 0.00 2.83
2301 2447 1.937223 CTGTGTAGCAACGTCCAACAA 59.063 47.619 0.00 0.00 0.00 2.83
2302 2448 1.577468 CTGTGTAGCAACGTCCAACA 58.423 50.000 0.00 0.00 0.00 3.33
2410 2559 4.440802 CGTGACAACAAAAGGGGAAATTGA 60.441 41.667 0.00 0.00 0.00 2.57
2422 2572 2.388310 TGTGAGGACGTGACAACAAA 57.612 45.000 0.00 0.00 0.00 2.83
2429 2579 1.745890 CTGGGTTGTGAGGACGTGA 59.254 57.895 0.00 0.00 0.00 4.35
2438 2588 0.890683 GAAAGGATGGCTGGGTTGTG 59.109 55.000 0.00 0.00 0.00 3.33
2445 2595 0.394899 GTGGAGGGAAAGGATGGCTG 60.395 60.000 0.00 0.00 0.00 4.85
2447 2597 1.076705 GGTGGAGGGAAAGGATGGC 60.077 63.158 0.00 0.00 0.00 4.40
2467 2642 1.362355 CGTTGGGTTTTCTGGTGGC 59.638 57.895 0.00 0.00 0.00 5.01
2486 2662 3.942439 GGGATCTGGGCCGGTAGC 61.942 72.222 13.14 1.77 42.60 3.58
2488 2664 4.892291 GGGGGATCTGGGCCGGTA 62.892 72.222 13.14 0.00 0.00 4.02
2597 2773 6.591313 TTTTTGCTTTGTTATTTTCGTCCC 57.409 33.333 0.00 0.00 0.00 4.46
2635 2811 4.797868 CAGACACAATTGCGTTTTCAGAAA 59.202 37.500 5.05 0.00 0.00 2.52
2908 3088 1.146263 GGGTACGGGGATGCAAGAG 59.854 63.158 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.