Multiple sequence alignment - TraesCS7A01G161100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G161100 chr7A 100.000 4501 0 0 1 4501 117789292 117784792 0.000000e+00 8312
1 TraesCS7A01G161100 chr7A 82.880 1840 216 60 1962 3763 117763441 117761663 0.000000e+00 1561
2 TraesCS7A01G161100 chr7A 86.749 1381 123 36 3132 4501 117757363 117756032 0.000000e+00 1482
3 TraesCS7A01G161100 chr7A 85.672 677 67 21 3814 4485 117761677 117761026 0.000000e+00 686
4 TraesCS7A01G161100 chr7D 93.398 2772 133 23 1655 4414 112427867 112425134 0.000000e+00 4060
5 TraesCS7A01G161100 chr7D 90.352 1420 81 21 1 1402 112429309 112427928 0.000000e+00 1812
6 TraesCS7A01G161100 chr7D 83.184 1897 218 52 2428 4306 112423966 112422153 0.000000e+00 1642
7 TraesCS7A01G161100 chr7D 91.111 135 11 1 4368 4501 112425135 112425001 9.950000e-42 182
8 TraesCS7A01G161100 chr7B 91.811 2772 160 27 1655 4414 72236613 72233897 0.000000e+00 3799
9 TraesCS7A01G161100 chr7B 90.178 1405 81 26 1 1386 72238056 72236690 0.000000e+00 1777
10 TraesCS7A01G161100 chr7B 82.040 1882 238 52 2445 4306 72223795 72221994 0.000000e+00 1511
11 TraesCS7A01G161100 chr7B 86.109 1375 133 30 3132 4495 72122032 72120705 0.000000e+00 1428
12 TraesCS7A01G161100 chr7B 86.036 1375 134 30 3132 4495 72142287 72140960 0.000000e+00 1423
13 TraesCS7A01G161100 chr7B 89.448 834 78 6 2867 3690 72202544 72203377 0.000000e+00 1044
14 TraesCS7A01G161100 chr7B 85.795 887 109 8 2757 3638 72159467 72160341 0.000000e+00 924
15 TraesCS7A01G161100 chr7B 91.513 542 39 3 3165 3699 72226442 72225901 0.000000e+00 739
16 TraesCS7A01G161100 chr7B 83.505 679 78 22 3729 4397 72203383 72204037 1.790000e-168 603
17 TraesCS7A01G161100 chr7B 86.559 558 60 6 3843 4397 72225659 72225114 6.440000e-168 601
18 TraesCS7A01G161100 chr7B 88.406 138 11 3 4368 4501 72233898 72233762 1.300000e-35 161
19 TraesCS7A01G161100 chr7B 89.381 113 10 2 4132 4242 72218212 72218100 1.690000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G161100 chr7A 117784792 117789292 4500 True 8312.000000 8312 100.000000 1 4501 1 chr7A.!!$R1 4500
1 TraesCS7A01G161100 chr7A 117756032 117763441 7409 True 1243.000000 1561 85.100333 1962 4501 3 chr7A.!!$R2 2539
2 TraesCS7A01G161100 chr7D 112422153 112429309 7156 True 1924.000000 4060 89.511250 1 4501 4 chr7D.!!$R1 4500
3 TraesCS7A01G161100 chr7B 72233762 72238056 4294 True 1912.333333 3799 90.131667 1 4501 3 chr7B.!!$R4 4500
4 TraesCS7A01G161100 chr7B 72120705 72122032 1327 True 1428.000000 1428 86.109000 3132 4495 1 chr7B.!!$R1 1363
5 TraesCS7A01G161100 chr7B 72140960 72142287 1327 True 1423.000000 1423 86.036000 3132 4495 1 chr7B.!!$R2 1363
6 TraesCS7A01G161100 chr7B 72159467 72160341 874 False 924.000000 924 85.795000 2757 3638 1 chr7B.!!$F1 881
7 TraesCS7A01G161100 chr7B 72202544 72204037 1493 False 823.500000 1044 86.476500 2867 4397 2 chr7B.!!$F2 1530
8 TraesCS7A01G161100 chr7B 72218100 72226442 8342 True 748.000000 1511 87.373250 2445 4397 4 chr7B.!!$R3 1952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 515 0.106819 GCAGCAGATCCACCAATCCT 60.107 55.0 0.0 0.0 0.00 3.24 F
1186 1194 0.030773 TACTCGCTGCATTCGCCTAG 59.969 55.0 0.0 0.0 37.32 3.02 F
1533 1559 0.038343 CCCAATGGTTGCGGACAAAG 60.038 55.0 0.0 0.0 37.58 2.77 F
1561 1587 0.107017 CTTCCCCCAATCGCTCATGT 60.107 55.0 0.0 0.0 0.00 3.21 F
1563 1589 0.468226 TCCCCCAATCGCTCATGTAC 59.532 55.0 0.0 0.0 0.00 2.90 F
1564 1590 0.469917 CCCCCAATCGCTCATGTACT 59.530 55.0 0.0 0.0 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1395 0.030101 AACCACGGAACAATGCAACG 59.970 50.000 0.00 0.0 0.00 4.10 R
2774 2818 1.401761 TTTGAGTGCATGGTGCTTGT 58.598 45.000 3.41 0.0 45.31 3.16 R
2889 2934 2.227388 CAGAAACCTCAGCACATCCAAC 59.773 50.000 0.00 0.0 0.00 3.77 R
2894 2939 3.777106 TCTTCAGAAACCTCAGCACAT 57.223 42.857 0.00 0.0 0.00 3.21 R
3142 8347 4.662966 ATTGGATAAGATGGGCAGCATA 57.337 40.909 0.00 0.0 0.00 3.14 R
3644 8857 5.757850 AAGAGCAAACCTTACTGAACTTG 57.242 39.130 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.141597 TGCTTTGATATCAATACCGGTGGA 60.142 41.667 19.93 12.74 35.55 4.02
110 114 2.028130 TCACAACCACACCCAAATGTC 58.972 47.619 0.00 0.00 0.00 3.06
169 173 8.103305 AGAATTCAACTCTTACATTTGGCTAGA 58.897 33.333 8.44 0.00 0.00 2.43
238 242 2.281484 GTCGAGGGCCTGCAACAA 60.281 61.111 12.95 0.00 0.00 2.83
244 248 0.825010 AGGGCCTGCAACAAGAACAG 60.825 55.000 4.50 0.00 0.00 3.16
247 251 3.419793 CCTGCAACAAGAACAGGGA 57.580 52.632 0.19 0.00 45.97 4.20
248 252 1.691196 CCTGCAACAAGAACAGGGAA 58.309 50.000 0.19 0.00 45.97 3.97
249 253 1.610522 CCTGCAACAAGAACAGGGAAG 59.389 52.381 0.19 0.00 45.97 3.46
317 321 6.998968 ATCAGAATCACCAAATCAGAAGAC 57.001 37.500 0.00 0.00 0.00 3.01
321 325 6.092396 CAGAATCACCAAATCAGAAGACAGAG 59.908 42.308 0.00 0.00 0.00 3.35
329 333 1.713647 TCAGAAGACAGAGGAGAGGGT 59.286 52.381 0.00 0.00 0.00 4.34
331 335 0.534873 GAAGACAGAGGAGAGGGTGC 59.465 60.000 0.00 0.00 0.00 5.01
441 445 0.994247 TGATCCCCTCTGCAACACAT 59.006 50.000 0.00 0.00 0.00 3.21
504 508 1.063649 CGCAATGCAGCAGATCCAC 59.936 57.895 5.91 0.00 0.00 4.02
505 509 1.436336 GCAATGCAGCAGATCCACC 59.564 57.895 0.00 0.00 0.00 4.61
511 515 0.106819 GCAGCAGATCCACCAATCCT 60.107 55.000 0.00 0.00 0.00 3.24
535 540 3.864944 TTCGCCACGAAATCGGTC 58.135 55.556 7.81 0.00 43.00 4.79
539 544 1.143969 CGCCACGAAATCGGTCCTAC 61.144 60.000 7.81 0.00 44.95 3.18
547 552 3.068307 CGAAATCGGTCCTACTCTTCCAT 59.932 47.826 0.00 0.00 35.37 3.41
548 553 4.277672 CGAAATCGGTCCTACTCTTCCATA 59.722 45.833 0.00 0.00 35.37 2.74
591 596 2.468670 CGGCGCCAAATTCATCGGA 61.469 57.895 28.98 0.00 0.00 4.55
602 607 3.567478 ATTCATCGGAGGGAAAGAAGG 57.433 47.619 0.00 0.00 0.00 3.46
627 634 1.004277 AGAGAGAGAGAGCTTCCGTGT 59.996 52.381 0.00 0.00 0.00 4.49
659 666 2.021039 GGCGAGATCGAGCATGCTC 61.021 63.158 33.47 33.47 43.02 4.26
800 808 4.653888 GGGTTCGTGGGTGGGTGG 62.654 72.222 0.00 0.00 0.00 4.61
801 809 4.653888 GGTTCGTGGGTGGGTGGG 62.654 72.222 0.00 0.00 0.00 4.61
923 931 4.891727 CTCGACGGCCCGGATTGG 62.892 72.222 8.57 0.00 37.55 3.16
1148 1156 4.740822 GCTCCCGCCCCAATGTGT 62.741 66.667 0.00 0.00 0.00 3.72
1149 1157 2.751436 CTCCCGCCCCAATGTGTG 60.751 66.667 0.00 0.00 0.00 3.82
1150 1158 3.567579 CTCCCGCCCCAATGTGTGT 62.568 63.158 0.00 0.00 0.00 3.72
1158 1166 1.468520 CCCCAATGTGTGTAAGCTTCG 59.531 52.381 0.00 0.00 0.00 3.79
1161 1169 1.806542 CAATGTGTGTAAGCTTCGCCT 59.193 47.619 0.00 0.00 0.00 5.52
1162 1170 1.726853 ATGTGTGTAAGCTTCGCCTC 58.273 50.000 0.00 0.00 0.00 4.70
1172 1180 0.935366 GCTTCGCCTCGGATTACTCG 60.935 60.000 0.00 0.00 0.00 4.18
1178 1186 0.032678 CCTCGGATTACTCGCTGCAT 59.967 55.000 0.00 0.00 0.00 3.96
1179 1187 1.539065 CCTCGGATTACTCGCTGCATT 60.539 52.381 0.00 0.00 0.00 3.56
1180 1188 1.789464 CTCGGATTACTCGCTGCATTC 59.211 52.381 0.00 0.00 0.00 2.67
1181 1189 0.504384 CGGATTACTCGCTGCATTCG 59.496 55.000 0.00 2.49 0.00 3.34
1182 1190 0.233332 GGATTACTCGCTGCATTCGC 59.767 55.000 0.00 0.00 39.24 4.70
1183 1191 0.233332 GATTACTCGCTGCATTCGCC 59.767 55.000 0.00 0.00 37.32 5.54
1184 1192 0.179073 ATTACTCGCTGCATTCGCCT 60.179 50.000 0.00 0.00 37.32 5.52
1185 1193 0.458260 TTACTCGCTGCATTCGCCTA 59.542 50.000 0.00 0.00 37.32 3.93
1186 1194 0.030773 TACTCGCTGCATTCGCCTAG 59.969 55.000 0.00 0.00 37.32 3.02
1208 1218 1.254975 TTCTTGATCTCGCGGTGGGA 61.255 55.000 6.13 0.00 0.00 4.37
1216 1234 2.582498 CGCGGTGGGATCTTCGAC 60.582 66.667 0.00 0.00 0.00 4.20
1221 1239 1.334243 CGGTGGGATCTTCGACTAGAC 59.666 57.143 0.00 0.00 0.00 2.59
1231 1249 0.900421 TCGACTAGACCACTCGGAGA 59.100 55.000 12.86 0.00 35.59 3.71
1247 1265 3.046390 CGGAGAATTGTAGAAGCGCTAG 58.954 50.000 12.05 0.00 0.00 3.42
1248 1266 2.797719 GGAGAATTGTAGAAGCGCTAGC 59.202 50.000 12.05 4.06 45.58 3.42
1259 1277 3.642901 GCGCTAGCTAGTTGCAGTA 57.357 52.632 25.66 0.00 45.94 2.74
1273 1291 4.513318 AGTTGCAGTAGCTCTTCAGTTTTC 59.487 41.667 0.00 0.00 42.74 2.29
1274 1292 3.403038 TGCAGTAGCTCTTCAGTTTTCC 58.597 45.455 0.00 0.00 42.74 3.13
1277 1295 4.083590 GCAGTAGCTCTTCAGTTTTCCTTG 60.084 45.833 0.00 0.00 37.91 3.61
1281 1299 4.390264 AGCTCTTCAGTTTTCCTTGGTAC 58.610 43.478 0.00 0.00 0.00 3.34
1282 1300 4.103311 AGCTCTTCAGTTTTCCTTGGTACT 59.897 41.667 0.00 0.00 0.00 2.73
1283 1301 5.307196 AGCTCTTCAGTTTTCCTTGGTACTA 59.693 40.000 0.00 0.00 0.00 1.82
1287 1305 3.000727 CAGTTTTCCTTGGTACTAGCCG 58.999 50.000 0.00 0.00 0.00 5.52
1288 1306 1.736126 GTTTTCCTTGGTACTAGCCGC 59.264 52.381 0.00 0.00 0.00 6.53
1289 1307 0.978151 TTTCCTTGGTACTAGCCGCA 59.022 50.000 0.00 0.00 0.00 5.69
1290 1308 0.248289 TTCCTTGGTACTAGCCGCAC 59.752 55.000 0.00 0.00 0.00 5.34
1294 1312 1.940883 TTGGTACTAGCCGCACTCCG 61.941 60.000 0.00 0.00 0.00 4.63
1310 1328 2.644992 CGTTTTGTGAGCTGGGGC 59.355 61.111 0.00 0.00 39.06 5.80
1325 1343 0.252197 GGGGCTCGGTTAAGTGATGT 59.748 55.000 0.00 0.00 0.00 3.06
1326 1344 1.339727 GGGGCTCGGTTAAGTGATGTT 60.340 52.381 0.00 0.00 0.00 2.71
1332 1350 6.238293 GGGCTCGGTTAAGTGATGTTAATTAC 60.238 42.308 0.00 0.00 0.00 1.89
1335 1353 8.114905 GCTCGGTTAAGTGATGTTAATTACTTC 58.885 37.037 0.00 0.00 40.66 3.01
1336 1354 9.367444 CTCGGTTAAGTGATGTTAATTACTTCT 57.633 33.333 0.00 0.00 40.66 2.85
1362 1380 6.040955 AGTTCGATATAGATCAGGAAACAGCA 59.959 38.462 0.00 0.00 31.78 4.41
1386 1404 1.443194 GCTGGTGAGCGTTGCATTG 60.443 57.895 0.00 0.00 34.87 2.82
1389 1407 0.310543 TGGTGAGCGTTGCATTGTTC 59.689 50.000 0.00 0.00 0.00 3.18
1391 1409 0.725784 GTGAGCGTTGCATTGTTCCG 60.726 55.000 0.00 0.00 0.00 4.30
1393 1411 0.725784 GAGCGTTGCATTGTTCCGTG 60.726 55.000 0.00 0.00 0.00 4.94
1398 1416 1.066303 GTTGCATTGTTCCGTGGTTGA 59.934 47.619 0.00 0.00 0.00 3.18
1399 1417 1.393603 TGCATTGTTCCGTGGTTGAA 58.606 45.000 0.00 0.00 0.00 2.69
1400 1418 1.336440 TGCATTGTTCCGTGGTTGAAG 59.664 47.619 0.00 0.00 0.00 3.02
1401 1419 1.930371 GCATTGTTCCGTGGTTGAAGC 60.930 52.381 0.00 0.00 0.00 3.86
1402 1420 0.591170 ATTGTTCCGTGGTTGAAGCG 59.409 50.000 0.00 0.00 0.00 4.68
1403 1421 1.440938 TTGTTCCGTGGTTGAAGCGG 61.441 55.000 0.00 0.00 46.12 5.52
1404 1422 1.890510 GTTCCGTGGTTGAAGCGGT 60.891 57.895 0.00 0.00 45.11 5.68
1405 1423 1.890041 TTCCGTGGTTGAAGCGGTG 60.890 57.895 0.00 0.00 45.11 4.94
1406 1424 4.025401 CCGTGGTTGAAGCGGTGC 62.025 66.667 0.00 0.00 40.53 5.01
1407 1425 4.025401 CGTGGTTGAAGCGGTGCC 62.025 66.667 0.00 0.00 0.00 5.01
1408 1426 3.670377 GTGGTTGAAGCGGTGCCC 61.670 66.667 0.00 0.00 0.00 5.36
1418 1436 2.825982 CGGTGCCCGGATAATCCA 59.174 61.111 0.73 0.00 44.15 3.41
1419 1437 1.597027 CGGTGCCCGGATAATCCAC 60.597 63.158 0.73 0.00 44.15 4.02
1420 1438 1.837090 GGTGCCCGGATAATCCACT 59.163 57.895 0.73 0.00 35.91 4.00
1421 1439 0.535102 GGTGCCCGGATAATCCACTG 60.535 60.000 0.73 0.00 35.91 3.66
1422 1440 0.468226 GTGCCCGGATAATCCACTGA 59.532 55.000 0.73 0.00 35.91 3.41
1423 1441 1.134220 GTGCCCGGATAATCCACTGAA 60.134 52.381 0.73 0.00 35.91 3.02
1424 1442 1.140852 TGCCCGGATAATCCACTGAAG 59.859 52.381 0.73 0.00 35.91 3.02
1425 1443 1.416401 GCCCGGATAATCCACTGAAGA 59.584 52.381 0.73 0.00 35.91 2.87
1426 1444 2.039084 GCCCGGATAATCCACTGAAGAT 59.961 50.000 0.73 0.00 35.91 2.40
1427 1445 3.260884 GCCCGGATAATCCACTGAAGATA 59.739 47.826 0.73 0.00 35.91 1.98
1428 1446 4.262894 GCCCGGATAATCCACTGAAGATAA 60.263 45.833 0.73 0.00 35.91 1.75
1429 1447 5.744887 GCCCGGATAATCCACTGAAGATAAA 60.745 44.000 0.73 0.00 35.91 1.40
1430 1448 6.296026 CCCGGATAATCCACTGAAGATAAAA 58.704 40.000 0.73 0.00 35.91 1.52
1431 1449 6.770785 CCCGGATAATCCACTGAAGATAAAAA 59.229 38.462 0.73 0.00 35.91 1.94
1432 1450 7.041098 CCCGGATAATCCACTGAAGATAAAAAG 60.041 40.741 0.73 0.00 35.91 2.27
1433 1451 7.041098 CCGGATAATCCACTGAAGATAAAAAGG 60.041 40.741 0.00 0.00 35.91 3.11
1434 1452 7.520614 CGGATAATCCACTGAAGATAAAAAGGC 60.521 40.741 0.00 0.00 35.91 4.35
1446 1465 5.868454 AGATAAAAAGGCCAGCATTTTGTT 58.132 33.333 14.87 6.49 39.40 2.83
1449 1468 2.259266 AAGGCCAGCATTTTGTTTGG 57.741 45.000 5.01 0.00 0.00 3.28
1454 1473 2.327568 CCAGCATTTTGTTTGGCTACG 58.672 47.619 0.00 0.00 34.25 3.51
1455 1474 1.720852 CAGCATTTTGTTTGGCTACGC 59.279 47.619 0.00 0.00 34.25 4.42
1460 1486 1.885560 TTTGTTTGGCTACGCTGCTA 58.114 45.000 0.00 0.00 0.00 3.49
1472 1498 4.319118 GCTACGCTGCTAATTCTCAAATCC 60.319 45.833 0.00 0.00 0.00 3.01
1484 1510 0.818938 TCAAATCCGATCCGTCCGAA 59.181 50.000 0.00 0.00 0.00 4.30
1487 1513 1.865865 AATCCGATCCGTCCGAAATG 58.134 50.000 0.00 0.00 0.00 2.32
1495 1521 4.436852 CGATCCGTCCGAAATGTTTGATTT 60.437 41.667 0.00 0.00 0.00 2.17
1496 1522 4.153958 TCCGTCCGAAATGTTTGATTTG 57.846 40.909 0.00 0.00 0.00 2.32
1497 1523 3.815962 TCCGTCCGAAATGTTTGATTTGA 59.184 39.130 0.00 0.00 0.00 2.69
1498 1524 4.457603 TCCGTCCGAAATGTTTGATTTGAT 59.542 37.500 0.00 0.00 0.00 2.57
1499 1525 5.048364 TCCGTCCGAAATGTTTGATTTGATT 60.048 36.000 0.00 0.00 0.00 2.57
1500 1526 5.633182 CCGTCCGAAATGTTTGATTTGATTT 59.367 36.000 0.00 0.00 0.00 2.17
1501 1527 6.183359 CCGTCCGAAATGTTTGATTTGATTTC 60.183 38.462 0.00 0.00 33.37 2.17
1502 1528 6.362016 CGTCCGAAATGTTTGATTTGATTTCA 59.638 34.615 0.00 0.00 35.45 2.69
1503 1529 7.501515 GTCCGAAATGTTTGATTTGATTTCAC 58.498 34.615 0.00 0.00 35.45 3.18
1504 1530 7.382218 GTCCGAAATGTTTGATTTGATTTCACT 59.618 33.333 0.00 0.00 35.45 3.41
1505 1531 8.572185 TCCGAAATGTTTGATTTGATTTCACTA 58.428 29.630 0.00 0.00 35.45 2.74
1506 1532 9.357652 CCGAAATGTTTGATTTGATTTCACTAT 57.642 29.630 0.00 0.00 35.45 2.12
1512 1538 9.076781 TGTTTGATTTGATTTCACTATTCTCCA 57.923 29.630 0.00 0.00 0.00 3.86
1513 1539 9.346725 GTTTGATTTGATTTCACTATTCTCCAC 57.653 33.333 0.00 0.00 0.00 4.02
1514 1540 7.630242 TGATTTGATTTCACTATTCTCCACC 57.370 36.000 0.00 0.00 0.00 4.61
1515 1541 6.603201 TGATTTGATTTCACTATTCTCCACCC 59.397 38.462 0.00 0.00 0.00 4.61
1516 1542 4.503714 TGATTTCACTATTCTCCACCCC 57.496 45.455 0.00 0.00 0.00 4.95
1517 1543 3.849574 TGATTTCACTATTCTCCACCCCA 59.150 43.478 0.00 0.00 0.00 4.96
1518 1544 4.290985 TGATTTCACTATTCTCCACCCCAA 59.709 41.667 0.00 0.00 0.00 4.12
1519 1545 4.946160 TTTCACTATTCTCCACCCCAAT 57.054 40.909 0.00 0.00 0.00 3.16
1520 1546 3.931907 TCACTATTCTCCACCCCAATG 57.068 47.619 0.00 0.00 0.00 2.82
1521 1547 2.509548 TCACTATTCTCCACCCCAATGG 59.490 50.000 0.00 0.00 41.57 3.16
1530 1556 2.282816 CCCCAATGGTTGCGGACA 60.283 61.111 0.00 0.00 29.94 4.02
1531 1557 1.905843 CCCCAATGGTTGCGGACAA 60.906 57.895 0.00 0.00 29.94 3.18
1532 1558 1.467678 CCCCAATGGTTGCGGACAAA 61.468 55.000 0.00 0.00 37.58 2.83
1533 1559 0.038343 CCCAATGGTTGCGGACAAAG 60.038 55.000 0.00 0.00 37.58 2.77
1534 1560 0.958091 CCAATGGTTGCGGACAAAGA 59.042 50.000 0.00 0.00 37.58 2.52
1535 1561 1.545582 CCAATGGTTGCGGACAAAGAT 59.454 47.619 0.00 0.00 37.58 2.40
1536 1562 2.029110 CCAATGGTTGCGGACAAAGATT 60.029 45.455 0.00 0.00 37.58 2.40
1537 1563 3.192422 CCAATGGTTGCGGACAAAGATTA 59.808 43.478 0.00 0.00 37.58 1.75
1538 1564 4.414852 CAATGGTTGCGGACAAAGATTAG 58.585 43.478 0.00 0.00 37.58 1.73
1539 1565 3.410631 TGGTTGCGGACAAAGATTAGA 57.589 42.857 0.00 0.00 37.58 2.10
1540 1566 3.071479 TGGTTGCGGACAAAGATTAGAC 58.929 45.455 0.00 0.00 37.58 2.59
1541 1567 3.244422 TGGTTGCGGACAAAGATTAGACT 60.244 43.478 0.00 0.00 37.58 3.24
1542 1568 3.371285 GGTTGCGGACAAAGATTAGACTC 59.629 47.826 0.00 0.00 37.58 3.36
1543 1569 4.246458 GTTGCGGACAAAGATTAGACTCT 58.754 43.478 0.00 0.00 37.58 3.24
1544 1570 4.537135 TGCGGACAAAGATTAGACTCTT 57.463 40.909 0.00 0.00 37.06 2.85
1545 1571 4.495422 TGCGGACAAAGATTAGACTCTTC 58.505 43.478 0.00 0.00 34.40 2.87
1546 1572 3.866327 GCGGACAAAGATTAGACTCTTCC 59.134 47.826 0.00 0.00 34.40 3.46
1547 1573 4.434520 CGGACAAAGATTAGACTCTTCCC 58.565 47.826 0.00 0.00 34.40 3.97
1548 1574 4.680975 CGGACAAAGATTAGACTCTTCCCC 60.681 50.000 0.00 0.00 34.40 4.81
1549 1575 4.384318 GGACAAAGATTAGACTCTTCCCCC 60.384 50.000 0.00 0.00 34.40 5.40
1550 1576 4.175962 ACAAAGATTAGACTCTTCCCCCA 58.824 43.478 0.00 0.00 34.40 4.96
1551 1577 4.601857 ACAAAGATTAGACTCTTCCCCCAA 59.398 41.667 0.00 0.00 34.40 4.12
1552 1578 5.254032 ACAAAGATTAGACTCTTCCCCCAAT 59.746 40.000 0.00 0.00 34.40 3.16
1553 1579 5.638530 AAGATTAGACTCTTCCCCCAATC 57.361 43.478 0.00 0.00 29.38 2.67
1554 1580 3.643792 AGATTAGACTCTTCCCCCAATCG 59.356 47.826 0.00 0.00 0.00 3.34
1555 1581 1.120530 TAGACTCTTCCCCCAATCGC 58.879 55.000 0.00 0.00 0.00 4.58
1556 1582 0.618968 AGACTCTTCCCCCAATCGCT 60.619 55.000 0.00 0.00 0.00 4.93
1557 1583 0.179070 GACTCTTCCCCCAATCGCTC 60.179 60.000 0.00 0.00 0.00 5.03
1558 1584 0.909610 ACTCTTCCCCCAATCGCTCA 60.910 55.000 0.00 0.00 0.00 4.26
1559 1585 0.471617 CTCTTCCCCCAATCGCTCAT 59.528 55.000 0.00 0.00 0.00 2.90
1560 1586 0.181114 TCTTCCCCCAATCGCTCATG 59.819 55.000 0.00 0.00 0.00 3.07
1561 1587 0.107017 CTTCCCCCAATCGCTCATGT 60.107 55.000 0.00 0.00 0.00 3.21
1562 1588 1.140852 CTTCCCCCAATCGCTCATGTA 59.859 52.381 0.00 0.00 0.00 2.29
1563 1589 0.468226 TCCCCCAATCGCTCATGTAC 59.532 55.000 0.00 0.00 0.00 2.90
1564 1590 0.469917 CCCCCAATCGCTCATGTACT 59.530 55.000 0.00 0.00 0.00 2.73
1565 1591 1.134098 CCCCCAATCGCTCATGTACTT 60.134 52.381 0.00 0.00 0.00 2.24
1566 1592 2.104111 CCCCCAATCGCTCATGTACTTA 59.896 50.000 0.00 0.00 0.00 2.24
1567 1593 3.244561 CCCCCAATCGCTCATGTACTTAT 60.245 47.826 0.00 0.00 0.00 1.73
1568 1594 4.389374 CCCCAATCGCTCATGTACTTATT 58.611 43.478 0.00 0.00 0.00 1.40
1569 1595 4.214119 CCCCAATCGCTCATGTACTTATTG 59.786 45.833 0.00 0.00 0.00 1.90
1570 1596 4.319766 CCCAATCGCTCATGTACTTATTGC 60.320 45.833 0.00 0.00 0.00 3.56
1571 1597 4.273235 CCAATCGCTCATGTACTTATTGCA 59.727 41.667 0.00 0.00 0.00 4.08
1572 1598 5.049198 CCAATCGCTCATGTACTTATTGCAT 60.049 40.000 0.00 0.00 0.00 3.96
1573 1599 5.852738 ATCGCTCATGTACTTATTGCATC 57.147 39.130 0.00 0.00 0.00 3.91
1574 1600 4.948847 TCGCTCATGTACTTATTGCATCT 58.051 39.130 0.00 0.00 0.00 2.90
1575 1601 5.359756 TCGCTCATGTACTTATTGCATCTT 58.640 37.500 0.00 0.00 0.00 2.40
1576 1602 6.512297 TCGCTCATGTACTTATTGCATCTTA 58.488 36.000 0.00 0.00 0.00 2.10
1577 1603 7.154656 TCGCTCATGTACTTATTGCATCTTAT 58.845 34.615 0.00 0.00 0.00 1.73
1578 1604 7.657354 TCGCTCATGTACTTATTGCATCTTATT 59.343 33.333 0.00 0.00 0.00 1.40
1579 1605 8.285394 CGCTCATGTACTTATTGCATCTTATTT 58.715 33.333 0.00 0.00 0.00 1.40
1593 1619 8.442632 TGCATCTTATTTACTCTCTGATTTGG 57.557 34.615 0.00 0.00 0.00 3.28
1594 1620 8.049117 TGCATCTTATTTACTCTCTGATTTGGT 58.951 33.333 0.00 0.00 0.00 3.67
1595 1621 8.897752 GCATCTTATTTACTCTCTGATTTGGTT 58.102 33.333 0.00 0.00 0.00 3.67
1601 1627 8.924511 ATTTACTCTCTGATTTGGTTTGAAGA 57.075 30.769 0.00 0.00 0.00 2.87
1602 1628 8.746052 TTTACTCTCTGATTTGGTTTGAAGAA 57.254 30.769 0.00 0.00 0.00 2.52
1603 1629 8.746052 TTACTCTCTGATTTGGTTTGAAGAAA 57.254 30.769 0.00 0.00 0.00 2.52
1604 1630 7.830099 ACTCTCTGATTTGGTTTGAAGAAAT 57.170 32.000 0.00 0.00 0.00 2.17
1605 1631 8.242729 ACTCTCTGATTTGGTTTGAAGAAATT 57.757 30.769 0.00 0.00 0.00 1.82
1606 1632 8.355913 ACTCTCTGATTTGGTTTGAAGAAATTC 58.644 33.333 0.00 0.00 0.00 2.17
1607 1633 8.236585 TCTCTGATTTGGTTTGAAGAAATTCA 57.763 30.769 0.00 0.00 0.00 2.57
1608 1634 8.863086 TCTCTGATTTGGTTTGAAGAAATTCAT 58.137 29.630 0.00 0.00 0.00 2.57
1609 1635 9.485206 CTCTGATTTGGTTTGAAGAAATTCATT 57.515 29.630 0.00 0.00 0.00 2.57
1610 1636 9.263538 TCTGATTTGGTTTGAAGAAATTCATTG 57.736 29.630 0.00 0.00 0.00 2.82
1611 1637 8.961294 TGATTTGGTTTGAAGAAATTCATTGT 57.039 26.923 0.00 0.00 0.00 2.71
1612 1638 9.393512 TGATTTGGTTTGAAGAAATTCATTGTT 57.606 25.926 0.00 0.00 0.00 2.83
1615 1641 9.447157 TTTGGTTTGAAGAAATTCATTGTTTCT 57.553 25.926 0.00 0.00 45.23 2.52
1616 1642 8.647143 TGGTTTGAAGAAATTCATTGTTTCTC 57.353 30.769 0.00 0.00 43.19 2.87
1617 1643 8.256605 TGGTTTGAAGAAATTCATTGTTTCTCA 58.743 29.630 0.00 0.93 43.19 3.27
1618 1644 9.264719 GGTTTGAAGAAATTCATTGTTTCTCAT 57.735 29.630 0.00 0.00 43.19 2.90
1620 1646 7.878477 TGAAGAAATTCATTGTTTCTCATGC 57.122 32.000 0.00 0.00 43.19 4.06
1621 1647 7.663827 TGAAGAAATTCATTGTTTCTCATGCT 58.336 30.769 0.00 0.00 43.19 3.79
1622 1648 8.145767 TGAAGAAATTCATTGTTTCTCATGCTT 58.854 29.630 0.00 0.00 43.19 3.91
1623 1649 9.630098 GAAGAAATTCATTGTTTCTCATGCTTA 57.370 29.630 0.00 0.00 43.19 3.09
1624 1650 9.635520 AAGAAATTCATTGTTTCTCATGCTTAG 57.364 29.630 0.00 0.00 43.19 2.18
1625 1651 9.017509 AGAAATTCATTGTTTCTCATGCTTAGA 57.982 29.630 0.00 0.00 40.85 2.10
1626 1652 9.630098 GAAATTCATTGTTTCTCATGCTTAGAA 57.370 29.630 0.00 0.00 33.79 2.10
1627 1653 9.985730 AAATTCATTGTTTCTCATGCTTAGAAA 57.014 25.926 4.42 4.42 39.91 2.52
1628 1654 9.635520 AATTCATTGTTTCTCATGCTTAGAAAG 57.364 29.630 8.01 0.00 42.13 2.62
1629 1655 7.750229 TCATTGTTTCTCATGCTTAGAAAGT 57.250 32.000 8.01 0.00 42.13 2.66
1630 1656 8.169977 TCATTGTTTCTCATGCTTAGAAAGTT 57.830 30.769 8.01 0.00 42.13 2.66
1631 1657 8.632679 TCATTGTTTCTCATGCTTAGAAAGTTT 58.367 29.630 8.01 0.00 42.13 2.66
1632 1658 8.697067 CATTGTTTCTCATGCTTAGAAAGTTTG 58.303 33.333 8.01 3.85 42.13 2.93
1633 1659 7.333528 TGTTTCTCATGCTTAGAAAGTTTGT 57.666 32.000 8.01 0.00 42.13 2.83
1634 1660 7.771183 TGTTTCTCATGCTTAGAAAGTTTGTT 58.229 30.769 8.01 0.00 42.13 2.83
1635 1661 7.701924 TGTTTCTCATGCTTAGAAAGTTTGTTG 59.298 33.333 8.01 0.00 42.13 3.33
1636 1662 6.942532 TCTCATGCTTAGAAAGTTTGTTGT 57.057 33.333 0.00 0.00 0.00 3.32
1637 1663 7.333528 TCTCATGCTTAGAAAGTTTGTTGTT 57.666 32.000 0.00 0.00 0.00 2.83
1638 1664 7.417612 TCTCATGCTTAGAAAGTTTGTTGTTC 58.582 34.615 0.00 0.00 0.00 3.18
1639 1665 7.066887 TCTCATGCTTAGAAAGTTTGTTGTTCA 59.933 33.333 0.00 0.00 0.00 3.18
1640 1666 7.715657 TCATGCTTAGAAAGTTTGTTGTTCAT 58.284 30.769 0.00 0.00 0.00 2.57
1641 1667 7.648908 TCATGCTTAGAAAGTTTGTTGTTCATG 59.351 33.333 0.00 2.43 0.00 3.07
1642 1668 6.862209 TGCTTAGAAAGTTTGTTGTTCATGT 58.138 32.000 0.00 0.00 0.00 3.21
1643 1669 6.751425 TGCTTAGAAAGTTTGTTGTTCATGTG 59.249 34.615 0.00 0.00 0.00 3.21
1644 1670 6.291796 GCTTAGAAAGTTTGTTGTTCATGTGC 60.292 38.462 0.00 0.00 0.00 4.57
1645 1671 5.329035 AGAAAGTTTGTTGTTCATGTGCT 57.671 34.783 0.00 0.00 0.00 4.40
1646 1672 6.449635 AGAAAGTTTGTTGTTCATGTGCTA 57.550 33.333 0.00 0.00 0.00 3.49
1647 1673 7.042797 AGAAAGTTTGTTGTTCATGTGCTAT 57.957 32.000 0.00 0.00 0.00 2.97
1648 1674 7.491682 AGAAAGTTTGTTGTTCATGTGCTATT 58.508 30.769 0.00 0.00 0.00 1.73
1649 1675 7.981225 AGAAAGTTTGTTGTTCATGTGCTATTT 59.019 29.630 0.00 0.00 0.00 1.40
1650 1676 8.491331 AAAGTTTGTTGTTCATGTGCTATTTT 57.509 26.923 0.00 0.00 0.00 1.82
1651 1677 7.698836 AGTTTGTTGTTCATGTGCTATTTTC 57.301 32.000 0.00 0.00 0.00 2.29
1652 1678 7.491682 AGTTTGTTGTTCATGTGCTATTTTCT 58.508 30.769 0.00 0.00 0.00 2.52
1653 1679 8.629158 AGTTTGTTGTTCATGTGCTATTTTCTA 58.371 29.630 0.00 0.00 0.00 2.10
1654 1680 9.243637 GTTTGTTGTTCATGTGCTATTTTCTAA 57.756 29.630 0.00 0.00 0.00 2.10
1655 1681 9.979578 TTTGTTGTTCATGTGCTATTTTCTAAT 57.020 25.926 0.00 0.00 0.00 1.73
1656 1682 9.979578 TTGTTGTTCATGTGCTATTTTCTAATT 57.020 25.926 0.00 0.00 0.00 1.40
1657 1683 9.624697 TGTTGTTCATGTGCTATTTTCTAATTC 57.375 29.630 0.00 0.00 0.00 2.17
1658 1684 9.624697 GTTGTTCATGTGCTATTTTCTAATTCA 57.375 29.630 0.00 0.00 0.00 2.57
1659 1685 9.844790 TTGTTCATGTGCTATTTTCTAATTCAG 57.155 29.630 0.00 0.00 0.00 3.02
1660 1686 9.230122 TGTTCATGTGCTATTTTCTAATTCAGA 57.770 29.630 0.00 0.00 0.00 3.27
1695 1721 3.730715 GTCATTGTTTCCTGAGTTTTGCG 59.269 43.478 0.00 0.00 0.00 4.85
1702 1728 1.266718 TCCTGAGTTTTGCGCATTGAC 59.733 47.619 12.75 10.67 0.00 3.18
1728 1754 4.874534 GCAATGAGCAATGCGTGT 57.125 50.000 0.00 0.00 44.79 4.49
1734 1760 4.334443 CAATGAGCAATGCGTGTACTTAC 58.666 43.478 0.00 0.00 0.00 2.34
1736 1762 3.394719 TGAGCAATGCGTGTACTTACAA 58.605 40.909 0.00 0.00 38.04 2.41
1745 1771 5.503498 TGCGTGTACTTACAAATTTGTGTC 58.497 37.500 29.72 16.31 42.31 3.67
1762 1788 7.581213 TTTGTGTCTGTAACTTCATGGATTT 57.419 32.000 0.00 0.00 0.00 2.17
1781 1807 6.433716 TGGATTTTGATGTCTTCTTGCACATA 59.566 34.615 0.00 0.00 33.22 2.29
1809 1837 9.836076 AAAATTCAAGGTAGTAAGAATAAACGC 57.164 29.630 0.00 0.00 31.01 4.84
1812 1840 5.574055 TCAAGGTAGTAAGAATAAACGCACG 59.426 40.000 0.00 0.00 0.00 5.34
1815 1843 5.803967 AGGTAGTAAGAATAAACGCACGAAG 59.196 40.000 0.00 0.00 0.00 3.79
1822 1850 6.295039 AGAATAAACGCACGAAGAAGAAAA 57.705 33.333 0.00 0.00 0.00 2.29
1825 1853 7.955864 AGAATAAACGCACGAAGAAGAAAATAC 59.044 33.333 0.00 0.00 0.00 1.89
1826 1854 3.700130 ACGCACGAAGAAGAAAATACG 57.300 42.857 0.00 0.00 0.00 3.06
1832 1860 6.357198 GCACGAAGAAGAAAATACGTTTGTA 58.643 36.000 0.00 0.00 34.45 2.41
1836 1864 9.940166 ACGAAGAAGAAAATACGTTTGTAAATT 57.060 25.926 0.00 0.00 33.44 1.82
1863 1891 9.107177 TCAAGACAATTAATTTTGCATGTTTGT 57.893 25.926 0.00 0.00 0.00 2.83
1986 2014 6.294899 GGGACTTGGGGTTATAAAAACTGTTC 60.295 42.308 0.00 0.00 0.00 3.18
2087 2117 4.009675 GGTGATGCTGTCCATGTTTTAGA 58.990 43.478 0.00 0.00 33.29 2.10
2141 2172 5.294306 CAGACTTGGCATATGACATTTACGT 59.706 40.000 13.22 4.97 30.06 3.57
2162 2200 5.514204 ACGTCTTACCGTTTATGAGATTTCG 59.486 40.000 0.00 0.00 37.96 3.46
2187 2225 3.566742 ACCGCTCGAAAGGTTTGTAAATT 59.433 39.130 5.71 0.00 37.49 1.82
2201 2239 8.924303 AGGTTTGTAAATTAAAAGCCTTCTCTT 58.076 29.630 5.60 0.00 34.99 2.85
2283 2321 2.548057 TGCTAGTTTTCTGAACCTTGCG 59.452 45.455 13.70 0.00 0.00 4.85
2286 2324 2.365582 AGTTTTCTGAACCTTGCGTGT 58.634 42.857 0.00 0.00 0.00 4.49
2309 2347 6.206048 TGTGGATCTGCTTATTTATGAGCATG 59.794 38.462 9.28 5.12 46.32 4.06
2310 2348 6.429078 GTGGATCTGCTTATTTATGAGCATGA 59.571 38.462 9.28 9.33 46.32 3.07
2311 2349 6.999871 TGGATCTGCTTATTTATGAGCATGAA 59.000 34.615 9.28 0.75 46.32 2.57
2312 2350 7.668469 TGGATCTGCTTATTTATGAGCATGAAT 59.332 33.333 9.28 5.89 46.32 2.57
2313 2351 9.170734 GGATCTGCTTATTTATGAGCATGAATA 57.829 33.333 9.28 4.22 46.32 1.75
2469 2508 2.093500 TGGTGACATCATCCTAGCACAC 60.093 50.000 0.00 0.00 33.40 3.82
2542 2581 7.009815 CCAAATTTGTGCTATAATTCTGCTGTG 59.990 37.037 16.73 0.00 0.00 3.66
2665 2709 1.827344 CTCACCTGAGCCATCACTACA 59.173 52.381 0.00 0.00 35.13 2.74
2750 2794 6.919775 ACCTATGGTAGTAAGCCTTATCTG 57.080 41.667 0.00 0.00 32.11 2.90
2774 2818 8.495361 TGCTGCGTATCCTTAAATACTTTTTA 57.505 30.769 0.00 0.00 31.24 1.52
2889 2934 7.678947 ACAAGGAAACTCATAAGTTGATCAG 57.321 36.000 0.00 0.00 45.07 2.90
2894 2939 6.655003 GGAAACTCATAAGTTGATCAGTTGGA 59.345 38.462 0.00 0.00 45.07 3.53
2918 2964 5.620206 TGTGCTGAGGTTTCTGAAGAATAA 58.380 37.500 0.00 0.00 33.54 1.40
3142 8347 7.945134 ACAAAGTTGCTGATCATTTTCTAAGT 58.055 30.769 0.00 0.00 0.00 2.24
3440 8648 1.031571 ATGAAATGGCCACACGCGAT 61.032 50.000 15.93 0.00 37.55 4.58
3644 8857 9.265901 AGTTGATACTCATGTAATCAAGTATGC 57.734 33.333 18.00 9.44 35.60 3.14
3707 8922 4.908601 TCCACTGGTGATATGTGTTTCT 57.091 40.909 1.93 0.00 0.00 2.52
3708 8923 4.578871 TCCACTGGTGATATGTGTTTCTG 58.421 43.478 1.93 0.00 0.00 3.02
3709 8924 4.041567 TCCACTGGTGATATGTGTTTCTGT 59.958 41.667 1.93 0.00 0.00 3.41
3710 8925 4.393062 CCACTGGTGATATGTGTTTCTGTC 59.607 45.833 1.93 0.00 0.00 3.51
3711 8926 4.091945 CACTGGTGATATGTGTTTCTGTCG 59.908 45.833 0.00 0.00 0.00 4.35
3712 8927 4.245660 CTGGTGATATGTGTTTCTGTCGT 58.754 43.478 0.00 0.00 0.00 4.34
3713 8928 4.637276 TGGTGATATGTGTTTCTGTCGTT 58.363 39.130 0.00 0.00 0.00 3.85
3714 8929 4.688879 TGGTGATATGTGTTTCTGTCGTTC 59.311 41.667 0.00 0.00 0.00 3.95
3735 8951 1.173913 GTTTATGCCTGGTGGGTGTC 58.826 55.000 0.00 0.00 37.43 3.67
3743 8959 1.278127 CCTGGTGGGTGTCGTTCTTAT 59.722 52.381 0.00 0.00 0.00 1.73
3747 8963 3.008594 TGGTGGGTGTCGTTCTTATCAAT 59.991 43.478 0.00 0.00 0.00 2.57
3925 9141 4.789012 TTTCTCTTTGGTGATGGAATGC 57.211 40.909 0.00 0.00 0.00 3.56
3934 9150 5.172687 TGGTGATGGAATGCTAGTTGTTA 57.827 39.130 0.00 0.00 0.00 2.41
3936 9152 5.186198 GGTGATGGAATGCTAGTTGTTAGT 58.814 41.667 0.00 0.00 0.00 2.24
4015 9236 6.924060 CGTCTAGATGTATAGGTTGAAAAGGG 59.076 42.308 3.59 0.00 0.00 3.95
4021 9242 8.832735 AGATGTATAGGTTGAAAAGGGTAAGAA 58.167 33.333 0.00 0.00 0.00 2.52
4248 9499 5.276489 CCATTTCGTGCAATATTTGTCATGC 60.276 40.000 0.00 0.00 39.22 4.06
4253 9504 4.439153 CGTGCAATATTTGTCATGCCTCTT 60.439 41.667 0.00 0.00 38.00 2.85
4306 12180 2.654863 CATAGAAGGCACCGGGAATTT 58.345 47.619 6.32 0.00 0.00 1.82
4366 12240 1.115930 TTAGCTCCGAGCCTCATCCC 61.116 60.000 16.99 0.00 43.77 3.85
4415 12334 2.540383 TGTACCAGCACTCAGATCCTT 58.460 47.619 0.00 0.00 0.00 3.36
4416 12335 2.497675 TGTACCAGCACTCAGATCCTTC 59.502 50.000 0.00 0.00 0.00 3.46
4431 12354 8.919777 TCAGATCCTTCGTCTATATCTTTGTA 57.080 34.615 0.00 0.00 0.00 2.41
4455 12378 2.094675 GCCATTAGACCAACATGCTGT 58.905 47.619 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.740506 TTCTTTGGGACGAAAACCCT 57.259 45.000 0.00 0.00 46.82 4.34
67 71 7.816995 GTGATCTTTCTTCTCATATTAGCCGAT 59.183 37.037 0.00 0.00 0.00 4.18
70 74 8.555361 GTTGTGATCTTTCTTCTCATATTAGCC 58.445 37.037 0.00 0.00 0.00 3.93
110 114 8.028938 CCTACATTGAAACATTTAGTTCCCTTG 58.971 37.037 0.00 0.00 40.26 3.61
169 173 2.421248 GGCTGCTGCTAAAGAGAAGGAT 60.421 50.000 15.64 0.00 39.59 3.24
238 242 3.107601 TCATCGATTCCTTCCCTGTTCT 58.892 45.455 0.00 0.00 0.00 3.01
244 248 2.291741 GCAATGTCATCGATTCCTTCCC 59.708 50.000 0.00 0.00 0.00 3.97
245 249 2.945008 TGCAATGTCATCGATTCCTTCC 59.055 45.455 0.00 0.00 0.00 3.46
246 250 4.621068 TTGCAATGTCATCGATTCCTTC 57.379 40.909 0.00 0.00 0.00 3.46
247 251 5.163513 GTTTTGCAATGTCATCGATTCCTT 58.836 37.500 0.00 0.00 0.00 3.36
248 252 4.218200 TGTTTTGCAATGTCATCGATTCCT 59.782 37.500 0.00 0.00 0.00 3.36
249 253 4.484236 TGTTTTGCAATGTCATCGATTCC 58.516 39.130 0.00 0.00 0.00 3.01
317 321 2.856039 TACCGGCACCCTCTCCTCTG 62.856 65.000 0.00 0.00 0.00 3.35
321 325 1.221021 CTTTACCGGCACCCTCTCC 59.779 63.158 0.00 0.00 0.00 3.71
329 333 2.473457 GGCGATTTCTTTACCGGCA 58.527 52.632 0.00 0.00 45.11 5.69
331 335 1.856597 CGTAGGCGATTTCTTTACCGG 59.143 52.381 0.00 0.00 41.33 5.28
441 445 1.348064 ATCTTGTCCTGACCGGTTCA 58.652 50.000 9.42 7.60 0.00 3.18
504 508 1.312815 GGCGAATTGAGGAGGATTGG 58.687 55.000 0.00 0.00 0.00 3.16
505 509 1.672881 GTGGCGAATTGAGGAGGATTG 59.327 52.381 0.00 0.00 0.00 2.67
511 515 2.006888 GATTTCGTGGCGAATTGAGGA 58.993 47.619 4.79 0.00 45.28 3.71
539 544 8.435984 CGGAGAATTCGGTCTCTATGGAAGAG 62.436 50.000 0.00 0.00 43.28 2.85
591 596 3.596046 TCTCTCTCTCTCCTTCTTTCCCT 59.404 47.826 0.00 0.00 0.00 4.20
602 607 3.471680 GGAAGCTCTCTCTCTCTCTCTC 58.528 54.545 0.00 0.00 0.00 3.20
686 693 0.108138 CGGCCATCTTCGTCTTCCTT 60.108 55.000 2.24 0.00 0.00 3.36
798 806 4.980805 GCGCACAACGGAGACCCA 62.981 66.667 0.30 0.00 43.93 4.51
801 809 4.059459 CACGCGCACAACGGAGAC 62.059 66.667 5.73 0.00 43.93 3.36
833 841 2.125106 CACCTTACCTGGCTCGGC 60.125 66.667 0.00 0.00 0.00 5.54
923 931 1.957877 CTCCTATCCGGTCTCCTGAAC 59.042 57.143 0.00 0.00 0.00 3.18
947 955 1.916181 CCTTTCCCTTCCAGCCTCTTA 59.084 52.381 0.00 0.00 0.00 2.10
951 959 2.162906 TGCCTTTCCCTTCCAGCCT 61.163 57.895 0.00 0.00 0.00 4.58
952 960 1.979155 GTGCCTTTCCCTTCCAGCC 60.979 63.158 0.00 0.00 0.00 4.85
955 963 1.152830 GTGGTGCCTTTCCCTTCCA 59.847 57.895 0.00 0.00 0.00 3.53
982 990 4.610714 GGATCCCGCTTCGCCTCC 62.611 72.222 0.00 0.00 0.00 4.30
988 996 2.974698 CGCCATGGATCCCGCTTC 60.975 66.667 18.40 0.00 0.00 3.86
995 1003 1.953138 CTCGACAGCGCCATGGATC 60.953 63.158 18.40 5.66 37.46 3.36
1158 1166 1.951631 GCAGCGAGTAATCCGAGGC 60.952 63.158 0.00 0.00 0.00 4.70
1161 1169 1.852942 GAATGCAGCGAGTAATCCGA 58.147 50.000 0.00 0.00 0.00 4.55
1162 1170 0.504384 CGAATGCAGCGAGTAATCCG 59.496 55.000 5.91 0.00 0.00 4.18
1172 1180 2.216898 AGAAATCTAGGCGAATGCAGC 58.783 47.619 0.00 0.00 45.35 5.25
1178 1186 4.611943 CGAGATCAAGAAATCTAGGCGAA 58.388 43.478 0.00 0.00 36.13 4.70
1179 1187 3.551046 GCGAGATCAAGAAATCTAGGCGA 60.551 47.826 0.00 0.00 36.13 5.54
1180 1188 2.728839 GCGAGATCAAGAAATCTAGGCG 59.271 50.000 0.00 0.00 36.13 5.52
1181 1189 2.728839 CGCGAGATCAAGAAATCTAGGC 59.271 50.000 0.00 0.00 36.13 3.93
1182 1190 3.243569 ACCGCGAGATCAAGAAATCTAGG 60.244 47.826 8.23 0.00 36.13 3.02
1183 1191 3.733224 CACCGCGAGATCAAGAAATCTAG 59.267 47.826 8.23 0.00 36.13 2.43
1184 1192 3.490933 CCACCGCGAGATCAAGAAATCTA 60.491 47.826 8.23 0.00 36.13 1.98
1185 1193 2.544685 CACCGCGAGATCAAGAAATCT 58.455 47.619 8.23 0.00 38.72 2.40
1186 1194 1.594862 CCACCGCGAGATCAAGAAATC 59.405 52.381 8.23 0.00 0.00 2.17
1216 1234 4.882427 TCTACAATTCTCCGAGTGGTCTAG 59.118 45.833 0.00 0.00 36.30 2.43
1221 1239 3.190874 GCTTCTACAATTCTCCGAGTGG 58.809 50.000 0.00 0.00 0.00 4.00
1231 1249 4.657436 ACTAGCTAGCGCTTCTACAATT 57.343 40.909 18.68 0.00 46.47 2.32
1247 1265 3.186119 CTGAAGAGCTACTGCAACTAGC 58.814 50.000 13.09 13.09 42.74 3.42
1248 1266 4.448537 ACTGAAGAGCTACTGCAACTAG 57.551 45.455 0.00 0.00 42.74 2.57
1249 1267 4.873746 AACTGAAGAGCTACTGCAACTA 57.126 40.909 0.00 0.00 42.74 2.24
1250 1268 3.760580 AACTGAAGAGCTACTGCAACT 57.239 42.857 0.00 0.00 42.74 3.16
1259 1277 3.584733 ACCAAGGAAAACTGAAGAGCT 57.415 42.857 0.00 0.00 0.00 4.09
1273 1291 0.179108 GAGTGCGGCTAGTACCAAGG 60.179 60.000 0.00 0.00 35.99 3.61
1274 1292 0.179108 GGAGTGCGGCTAGTACCAAG 60.179 60.000 0.00 0.00 35.99 3.61
1277 1295 1.941999 AACGGAGTGCGGCTAGTACC 61.942 60.000 9.43 0.00 45.00 3.34
1281 1299 0.949105 ACAAAACGGAGTGCGGCTAG 60.949 55.000 9.43 0.00 45.00 3.42
1282 1300 1.070105 ACAAAACGGAGTGCGGCTA 59.930 52.632 9.43 0.00 45.00 3.93
1283 1301 2.203153 ACAAAACGGAGTGCGGCT 60.203 55.556 9.43 0.00 45.00 5.52
1287 1305 0.040958 CAGCTCACAAAACGGAGTGC 60.041 55.000 0.00 0.00 45.00 4.40
1288 1306 0.588252 CCAGCTCACAAAACGGAGTG 59.412 55.000 0.00 0.00 45.00 3.51
1290 1308 1.237285 CCCCAGCTCACAAAACGGAG 61.237 60.000 0.00 0.00 0.00 4.63
1310 1328 9.367444 AGAAGTAATTAACATCACTTAACCGAG 57.633 33.333 0.00 0.00 31.57 4.63
1332 1350 9.834628 GTTTCCTGATCTATATCGAACTAGAAG 57.165 37.037 10.33 5.74 34.60 2.85
1335 1353 7.753132 GCTGTTTCCTGATCTATATCGAACTAG 59.247 40.741 0.00 0.00 34.60 2.57
1336 1354 7.230712 TGCTGTTTCCTGATCTATATCGAACTA 59.769 37.037 0.00 0.00 34.60 2.24
1338 1356 6.144724 GTGCTGTTTCCTGATCTATATCGAAC 59.855 42.308 0.00 0.00 34.60 3.95
1340 1358 5.279006 GGTGCTGTTTCCTGATCTATATCGA 60.279 44.000 0.00 0.00 34.60 3.59
1341 1359 4.926238 GGTGCTGTTTCCTGATCTATATCG 59.074 45.833 0.00 0.00 34.60 2.92
1342 1360 5.858381 TGGTGCTGTTTCCTGATCTATATC 58.142 41.667 0.00 0.00 0.00 1.63
1343 1361 5.894298 TGGTGCTGTTTCCTGATCTATAT 57.106 39.130 0.00 0.00 0.00 0.86
1344 1362 5.894298 ATGGTGCTGTTTCCTGATCTATA 57.106 39.130 0.00 0.00 0.00 1.31
1345 1363 4.785346 ATGGTGCTGTTTCCTGATCTAT 57.215 40.909 0.00 0.00 0.00 1.98
1369 1387 0.311790 AACAATGCAACGCTCACCAG 59.688 50.000 0.00 0.00 0.00 4.00
1371 1389 0.387239 GGAACAATGCAACGCTCACC 60.387 55.000 0.00 0.00 0.00 4.02
1377 1395 0.030101 AACCACGGAACAATGCAACG 59.970 50.000 0.00 0.00 0.00 4.10
1391 1409 3.670377 GGGCACCGCTTCAACCAC 61.670 66.667 0.00 0.00 40.86 4.16
1403 1421 0.468226 TCAGTGGATTATCCGGGCAC 59.532 55.000 0.00 0.00 40.17 5.01
1404 1422 1.140852 CTTCAGTGGATTATCCGGGCA 59.859 52.381 0.00 0.00 40.17 5.36
1405 1423 1.416401 TCTTCAGTGGATTATCCGGGC 59.584 52.381 0.00 0.00 40.17 6.13
1406 1424 5.483685 TTATCTTCAGTGGATTATCCGGG 57.516 43.478 0.00 0.00 40.17 5.73
1407 1425 7.041098 CCTTTTTATCTTCAGTGGATTATCCGG 60.041 40.741 6.77 0.00 40.17 5.14
1408 1426 7.520614 GCCTTTTTATCTTCAGTGGATTATCCG 60.521 40.741 6.77 0.00 40.17 4.18
1409 1427 7.255625 GGCCTTTTTATCTTCAGTGGATTATCC 60.256 40.741 3.91 3.91 36.96 2.59
1410 1428 7.285401 TGGCCTTTTTATCTTCAGTGGATTATC 59.715 37.037 3.32 0.00 0.00 1.75
1411 1429 7.125391 TGGCCTTTTTATCTTCAGTGGATTAT 58.875 34.615 3.32 0.00 0.00 1.28
1412 1430 6.489603 TGGCCTTTTTATCTTCAGTGGATTA 58.510 36.000 3.32 0.00 0.00 1.75
1413 1431 5.332743 TGGCCTTTTTATCTTCAGTGGATT 58.667 37.500 3.32 0.00 0.00 3.01
1414 1432 4.934356 TGGCCTTTTTATCTTCAGTGGAT 58.066 39.130 3.32 0.00 0.00 3.41
1415 1433 4.335416 CTGGCCTTTTTATCTTCAGTGGA 58.665 43.478 3.32 0.00 0.00 4.02
1416 1434 3.119352 GCTGGCCTTTTTATCTTCAGTGG 60.119 47.826 3.32 0.00 0.00 4.00
1417 1435 3.507233 TGCTGGCCTTTTTATCTTCAGTG 59.493 43.478 3.32 0.00 0.00 3.66
1418 1436 3.766545 TGCTGGCCTTTTTATCTTCAGT 58.233 40.909 3.32 0.00 0.00 3.41
1419 1437 4.996788 ATGCTGGCCTTTTTATCTTCAG 57.003 40.909 3.32 0.00 0.00 3.02
1420 1438 5.743636 AAATGCTGGCCTTTTTATCTTCA 57.256 34.783 3.32 0.00 0.00 3.02
1421 1439 5.934043 ACAAAATGCTGGCCTTTTTATCTTC 59.066 36.000 3.32 0.00 31.75 2.87
1422 1440 5.868454 ACAAAATGCTGGCCTTTTTATCTT 58.132 33.333 3.32 0.00 31.75 2.40
1423 1441 5.488262 ACAAAATGCTGGCCTTTTTATCT 57.512 34.783 3.32 0.00 31.75 1.98
1424 1442 6.372981 CAAACAAAATGCTGGCCTTTTTATC 58.627 36.000 3.32 0.00 31.75 1.75
1425 1443 5.241285 CCAAACAAAATGCTGGCCTTTTTAT 59.759 36.000 3.32 0.00 31.75 1.40
1426 1444 4.578105 CCAAACAAAATGCTGGCCTTTTTA 59.422 37.500 3.32 0.00 31.75 1.52
1427 1445 3.380954 CCAAACAAAATGCTGGCCTTTTT 59.619 39.130 3.32 2.42 32.77 1.94
1428 1446 2.950975 CCAAACAAAATGCTGGCCTTTT 59.049 40.909 3.32 0.00 0.00 2.27
1429 1447 2.574450 CCAAACAAAATGCTGGCCTTT 58.426 42.857 3.32 0.00 0.00 3.11
1430 1448 1.815021 GCCAAACAAAATGCTGGCCTT 60.815 47.619 3.32 0.00 41.35 4.35
1431 1449 0.250424 GCCAAACAAAATGCTGGCCT 60.250 50.000 3.32 0.00 41.35 5.19
1432 1450 0.250424 AGCCAAACAAAATGCTGGCC 60.250 50.000 16.27 0.00 45.65 5.36
1433 1451 2.068519 GTAGCCAAACAAAATGCTGGC 58.931 47.619 13.43 13.43 45.16 4.85
1434 1452 2.327568 CGTAGCCAAACAAAATGCTGG 58.672 47.619 0.00 0.00 35.34 4.85
1450 1469 4.084849 CGGATTTGAGAATTAGCAGCGTAG 60.085 45.833 0.00 0.00 0.00 3.51
1453 1472 2.866156 TCGGATTTGAGAATTAGCAGCG 59.134 45.455 0.00 0.00 0.00 5.18
1454 1473 4.083590 GGATCGGATTTGAGAATTAGCAGC 60.084 45.833 0.00 0.00 0.00 5.25
1455 1474 4.151335 CGGATCGGATTTGAGAATTAGCAG 59.849 45.833 0.00 0.00 0.00 4.24
1460 1486 3.467803 GGACGGATCGGATTTGAGAATT 58.532 45.455 7.35 0.00 0.00 2.17
1472 1498 1.996898 TCAAACATTTCGGACGGATCG 59.003 47.619 0.00 0.00 0.00 3.69
1487 1513 9.346725 GTGGAGAATAGTGAAATCAAATCAAAC 57.653 33.333 0.00 0.00 0.00 2.93
1495 1521 3.849574 TGGGGTGGAGAATAGTGAAATCA 59.150 43.478 0.00 0.00 0.00 2.57
1496 1522 4.503714 TGGGGTGGAGAATAGTGAAATC 57.496 45.455 0.00 0.00 0.00 2.17
1497 1523 4.946160 TTGGGGTGGAGAATAGTGAAAT 57.054 40.909 0.00 0.00 0.00 2.17
1498 1524 4.569653 CCATTGGGGTGGAGAATAGTGAAA 60.570 45.833 0.00 0.00 42.02 2.69
1499 1525 3.053693 CCATTGGGGTGGAGAATAGTGAA 60.054 47.826 0.00 0.00 42.02 3.18
1500 1526 2.509548 CCATTGGGGTGGAGAATAGTGA 59.490 50.000 0.00 0.00 42.02 3.41
1501 1527 2.936202 CCATTGGGGTGGAGAATAGTG 58.064 52.381 0.00 0.00 42.02 2.74
1514 1540 0.038343 CTTTGTCCGCAACCATTGGG 60.038 55.000 7.78 0.00 42.62 4.12
1515 1541 0.958091 TCTTTGTCCGCAACCATTGG 59.042 50.000 0.00 0.00 33.82 3.16
1516 1542 3.302365 AATCTTTGTCCGCAACCATTG 57.698 42.857 0.00 0.00 33.82 2.82
1517 1543 4.156008 GTCTAATCTTTGTCCGCAACCATT 59.844 41.667 0.00 0.00 33.82 3.16
1518 1544 3.689649 GTCTAATCTTTGTCCGCAACCAT 59.310 43.478 0.00 0.00 33.82 3.55
1519 1545 3.071479 GTCTAATCTTTGTCCGCAACCA 58.929 45.455 0.00 0.00 33.82 3.67
1520 1546 3.335579 AGTCTAATCTTTGTCCGCAACC 58.664 45.455 0.00 0.00 33.82 3.77
1521 1547 4.246458 AGAGTCTAATCTTTGTCCGCAAC 58.754 43.478 0.00 0.00 33.82 4.17
1522 1548 4.537135 AGAGTCTAATCTTTGTCCGCAA 57.463 40.909 0.00 0.00 0.00 4.85
1523 1549 4.495422 GAAGAGTCTAATCTTTGTCCGCA 58.505 43.478 0.00 0.00 39.63 5.69
1524 1550 3.866327 GGAAGAGTCTAATCTTTGTCCGC 59.134 47.826 0.00 0.00 39.63 5.54
1525 1551 4.434520 GGGAAGAGTCTAATCTTTGTCCG 58.565 47.826 0.00 0.00 39.63 4.79
1526 1552 4.384318 GGGGGAAGAGTCTAATCTTTGTCC 60.384 50.000 0.00 0.00 39.63 4.02
1527 1553 4.225267 TGGGGGAAGAGTCTAATCTTTGTC 59.775 45.833 0.00 0.00 39.63 3.18
1528 1554 4.175962 TGGGGGAAGAGTCTAATCTTTGT 58.824 43.478 0.00 0.00 39.63 2.83
1529 1555 4.844349 TGGGGGAAGAGTCTAATCTTTG 57.156 45.455 0.00 0.00 39.63 2.77
1530 1556 5.396884 CGATTGGGGGAAGAGTCTAATCTTT 60.397 44.000 0.00 0.00 39.63 2.52
1531 1557 4.101741 CGATTGGGGGAAGAGTCTAATCTT 59.898 45.833 0.00 0.00 42.23 2.40
1532 1558 3.643792 CGATTGGGGGAAGAGTCTAATCT 59.356 47.826 0.00 0.00 0.00 2.40
1533 1559 3.804063 GCGATTGGGGGAAGAGTCTAATC 60.804 52.174 0.00 0.00 0.00 1.75
1534 1560 2.104963 GCGATTGGGGGAAGAGTCTAAT 59.895 50.000 0.00 0.00 0.00 1.73
1535 1561 1.485066 GCGATTGGGGGAAGAGTCTAA 59.515 52.381 0.00 0.00 0.00 2.10
1536 1562 1.120530 GCGATTGGGGGAAGAGTCTA 58.879 55.000 0.00 0.00 0.00 2.59
1537 1563 0.618968 AGCGATTGGGGGAAGAGTCT 60.619 55.000 0.00 0.00 0.00 3.24
1538 1564 0.179070 GAGCGATTGGGGGAAGAGTC 60.179 60.000 0.00 0.00 0.00 3.36
1539 1565 0.909610 TGAGCGATTGGGGGAAGAGT 60.910 55.000 0.00 0.00 0.00 3.24
1540 1566 0.471617 ATGAGCGATTGGGGGAAGAG 59.528 55.000 0.00 0.00 0.00 2.85
1541 1567 0.181114 CATGAGCGATTGGGGGAAGA 59.819 55.000 0.00 0.00 0.00 2.87
1542 1568 0.107017 ACATGAGCGATTGGGGGAAG 60.107 55.000 0.00 0.00 0.00 3.46
1543 1569 1.134220 GTACATGAGCGATTGGGGGAA 60.134 52.381 0.00 0.00 0.00 3.97
1544 1570 0.468226 GTACATGAGCGATTGGGGGA 59.532 55.000 0.00 0.00 0.00 4.81
1545 1571 0.469917 AGTACATGAGCGATTGGGGG 59.530 55.000 0.00 0.00 0.00 5.40
1546 1572 2.332063 AAGTACATGAGCGATTGGGG 57.668 50.000 0.00 0.00 0.00 4.96
1547 1573 4.319766 GCAATAAGTACATGAGCGATTGGG 60.320 45.833 0.00 0.00 0.00 4.12
1548 1574 4.273235 TGCAATAAGTACATGAGCGATTGG 59.727 41.667 0.00 0.00 0.00 3.16
1549 1575 5.408204 TGCAATAAGTACATGAGCGATTG 57.592 39.130 0.00 8.24 0.00 2.67
1550 1576 5.994054 AGATGCAATAAGTACATGAGCGATT 59.006 36.000 0.00 0.00 0.00 3.34
1551 1577 5.545588 AGATGCAATAAGTACATGAGCGAT 58.454 37.500 0.00 0.00 0.00 4.58
1552 1578 4.948847 AGATGCAATAAGTACATGAGCGA 58.051 39.130 0.00 0.00 0.00 4.93
1553 1579 5.663795 AAGATGCAATAAGTACATGAGCG 57.336 39.130 0.00 0.00 0.00 5.03
1567 1593 8.896744 CCAAATCAGAGAGTAAATAAGATGCAA 58.103 33.333 0.00 0.00 0.00 4.08
1568 1594 8.049117 ACCAAATCAGAGAGTAAATAAGATGCA 58.951 33.333 0.00 0.00 0.00 3.96
1569 1595 8.443953 ACCAAATCAGAGAGTAAATAAGATGC 57.556 34.615 0.00 0.00 0.00 3.91
1576 1602 8.924511 TCTTCAAACCAAATCAGAGAGTAAAT 57.075 30.769 0.00 0.00 0.00 1.40
1577 1603 8.746052 TTCTTCAAACCAAATCAGAGAGTAAA 57.254 30.769 0.00 0.00 0.00 2.01
1578 1604 8.746052 TTTCTTCAAACCAAATCAGAGAGTAA 57.254 30.769 0.00 0.00 0.00 2.24
1579 1605 8.924511 ATTTCTTCAAACCAAATCAGAGAGTA 57.075 30.769 0.00 0.00 0.00 2.59
1580 1606 7.830099 ATTTCTTCAAACCAAATCAGAGAGT 57.170 32.000 0.00 0.00 0.00 3.24
1581 1607 8.355169 TGAATTTCTTCAAACCAAATCAGAGAG 58.645 33.333 0.00 0.00 38.43 3.20
1582 1608 8.236585 TGAATTTCTTCAAACCAAATCAGAGA 57.763 30.769 0.00 0.00 38.43 3.10
1583 1609 9.485206 AATGAATTTCTTCAAACCAAATCAGAG 57.515 29.630 0.00 0.00 44.29 3.35
1584 1610 9.263538 CAATGAATTTCTTCAAACCAAATCAGA 57.736 29.630 0.00 0.00 44.29 3.27
1585 1611 9.048446 ACAATGAATTTCTTCAAACCAAATCAG 57.952 29.630 0.00 0.00 44.29 2.90
1586 1612 8.961294 ACAATGAATTTCTTCAAACCAAATCA 57.039 26.923 0.00 0.00 44.29 2.57
1589 1615 9.447157 AGAAACAATGAATTTCTTCAAACCAAA 57.553 25.926 0.00 0.00 42.46 3.28
1590 1616 9.097257 GAGAAACAATGAATTTCTTCAAACCAA 57.903 29.630 1.80 0.00 44.53 3.67
1591 1617 8.256605 TGAGAAACAATGAATTTCTTCAAACCA 58.743 29.630 1.80 0.00 44.53 3.67
1592 1618 8.647143 TGAGAAACAATGAATTTCTTCAAACC 57.353 30.769 1.80 0.00 44.53 3.27
1594 1620 8.767085 GCATGAGAAACAATGAATTTCTTCAAA 58.233 29.630 0.00 0.00 44.53 2.69
1595 1621 8.145767 AGCATGAGAAACAATGAATTTCTTCAA 58.854 29.630 0.00 0.00 44.53 2.69
1596 1622 7.663827 AGCATGAGAAACAATGAATTTCTTCA 58.336 30.769 0.00 2.93 44.53 3.02
1597 1623 8.530269 AAGCATGAGAAACAATGAATTTCTTC 57.470 30.769 0.00 0.00 44.53 2.87
1598 1624 9.635520 CTAAGCATGAGAAACAATGAATTTCTT 57.364 29.630 0.00 0.00 44.53 2.52
1599 1625 9.017509 TCTAAGCATGAGAAACAATGAATTTCT 57.982 29.630 0.00 0.00 46.62 2.52
1600 1626 9.630098 TTCTAAGCATGAGAAACAATGAATTTC 57.370 29.630 0.00 0.00 30.90 2.17
1601 1627 9.985730 TTTCTAAGCATGAGAAACAATGAATTT 57.014 25.926 0.00 0.00 40.64 1.82
1602 1628 9.635520 CTTTCTAAGCATGAGAAACAATGAATT 57.364 29.630 0.00 0.00 40.64 2.17
1603 1629 8.800332 ACTTTCTAAGCATGAGAAACAATGAAT 58.200 29.630 0.00 0.00 40.64 2.57
1604 1630 8.169977 ACTTTCTAAGCATGAGAAACAATGAA 57.830 30.769 0.00 0.00 40.64 2.57
1605 1631 7.750229 ACTTTCTAAGCATGAGAAACAATGA 57.250 32.000 0.00 0.00 40.64 2.57
1606 1632 8.697067 CAAACTTTCTAAGCATGAGAAACAATG 58.303 33.333 0.00 0.00 40.64 2.82
1607 1633 8.416329 ACAAACTTTCTAAGCATGAGAAACAAT 58.584 29.630 0.00 0.00 40.64 2.71
1608 1634 7.771183 ACAAACTTTCTAAGCATGAGAAACAA 58.229 30.769 0.00 0.00 40.64 2.83
1609 1635 7.333528 ACAAACTTTCTAAGCATGAGAAACA 57.666 32.000 0.00 0.00 40.64 2.83
1610 1636 7.702348 ACAACAAACTTTCTAAGCATGAGAAAC 59.298 33.333 0.00 0.00 40.64 2.78
1611 1637 7.771183 ACAACAAACTTTCTAAGCATGAGAAA 58.229 30.769 0.00 2.24 43.26 2.52
1612 1638 7.333528 ACAACAAACTTTCTAAGCATGAGAA 57.666 32.000 0.00 0.00 32.38 2.87
1613 1639 6.942532 ACAACAAACTTTCTAAGCATGAGA 57.057 33.333 0.00 0.00 0.00 3.27
1614 1640 7.195646 TGAACAACAAACTTTCTAAGCATGAG 58.804 34.615 0.00 0.00 0.00 2.90
1615 1641 7.094508 TGAACAACAAACTTTCTAAGCATGA 57.905 32.000 0.00 0.00 0.00 3.07
1616 1642 7.436080 ACATGAACAACAAACTTTCTAAGCATG 59.564 33.333 0.00 0.00 34.65 4.06
1617 1643 7.436080 CACATGAACAACAAACTTTCTAAGCAT 59.564 33.333 0.00 0.00 0.00 3.79
1618 1644 6.751425 CACATGAACAACAAACTTTCTAAGCA 59.249 34.615 0.00 0.00 0.00 3.91
1619 1645 6.291796 GCACATGAACAACAAACTTTCTAAGC 60.292 38.462 0.00 0.00 0.00 3.09
1620 1646 6.974622 AGCACATGAACAACAAACTTTCTAAG 59.025 34.615 0.00 0.00 0.00 2.18
1621 1647 6.862209 AGCACATGAACAACAAACTTTCTAA 58.138 32.000 0.00 0.00 0.00 2.10
1622 1648 6.449635 AGCACATGAACAACAAACTTTCTA 57.550 33.333 0.00 0.00 0.00 2.10
1623 1649 5.329035 AGCACATGAACAACAAACTTTCT 57.671 34.783 0.00 0.00 0.00 2.52
1624 1650 7.698836 AATAGCACATGAACAACAAACTTTC 57.301 32.000 0.00 0.00 0.00 2.62
1625 1651 8.491331 AAAATAGCACATGAACAACAAACTTT 57.509 26.923 0.00 0.00 0.00 2.66
1626 1652 7.981225 AGAAAATAGCACATGAACAACAAACTT 59.019 29.630 0.00 0.00 0.00 2.66
1627 1653 7.491682 AGAAAATAGCACATGAACAACAAACT 58.508 30.769 0.00 0.00 0.00 2.66
1628 1654 7.698836 AGAAAATAGCACATGAACAACAAAC 57.301 32.000 0.00 0.00 0.00 2.93
1629 1655 9.979578 ATTAGAAAATAGCACATGAACAACAAA 57.020 25.926 0.00 0.00 0.00 2.83
1630 1656 9.979578 AATTAGAAAATAGCACATGAACAACAA 57.020 25.926 0.00 0.00 0.00 2.83
1631 1657 9.624697 GAATTAGAAAATAGCACATGAACAACA 57.375 29.630 0.00 0.00 0.00 3.33
1632 1658 9.624697 TGAATTAGAAAATAGCACATGAACAAC 57.375 29.630 0.00 0.00 0.00 3.32
1633 1659 9.844790 CTGAATTAGAAAATAGCACATGAACAA 57.155 29.630 0.00 0.00 0.00 2.83
1634 1660 9.230122 TCTGAATTAGAAAATAGCACATGAACA 57.770 29.630 0.00 0.00 30.84 3.18
1674 1700 3.795150 GCGCAAAACTCAGGAAACAATGA 60.795 43.478 0.30 0.00 0.00 2.57
1679 1705 2.422276 ATGCGCAAAACTCAGGAAAC 57.578 45.000 17.11 0.00 0.00 2.78
1691 1717 0.940833 TTGAGAACGTCAATGCGCAA 59.059 45.000 17.11 0.00 40.45 4.85
1695 1721 2.686558 TTGCTTGAGAACGTCAATGC 57.313 45.000 0.00 0.00 44.44 3.56
1734 1760 7.424803 TCCATGAAGTTACAGACACAAATTTG 58.575 34.615 16.67 16.67 0.00 2.32
1736 1762 7.765695 ATCCATGAAGTTACAGACACAAATT 57.234 32.000 0.00 0.00 0.00 1.82
1745 1771 8.048534 AGACATCAAAATCCATGAAGTTACAG 57.951 34.615 0.00 0.00 29.67 2.74
1753 1779 5.477637 TGCAAGAAGACATCAAAATCCATGA 59.522 36.000 0.00 0.00 0.00 3.07
1796 1824 6.385537 TCTTCTTCGTGCGTTTATTCTTAC 57.614 37.500 0.00 0.00 0.00 2.34
1797 1825 7.410800 TTTCTTCTTCGTGCGTTTATTCTTA 57.589 32.000 0.00 0.00 0.00 2.10
1800 1828 7.046442 CGTATTTTCTTCTTCGTGCGTTTATTC 60.046 37.037 0.00 0.00 0.00 1.75
1801 1829 6.735063 CGTATTTTCTTCTTCGTGCGTTTATT 59.265 34.615 0.00 0.00 0.00 1.40
1802 1830 6.128742 ACGTATTTTCTTCTTCGTGCGTTTAT 60.129 34.615 0.00 0.00 0.00 1.40
1803 1831 5.175491 ACGTATTTTCTTCTTCGTGCGTTTA 59.825 36.000 0.00 0.00 0.00 2.01
1804 1832 4.025480 ACGTATTTTCTTCTTCGTGCGTTT 60.025 37.500 0.00 0.00 0.00 3.60
1807 1835 3.700130 ACGTATTTTCTTCTTCGTGCG 57.300 42.857 0.00 0.00 0.00 5.34
1809 1837 8.756376 TTTACAAACGTATTTTCTTCTTCGTG 57.244 30.769 0.00 0.00 0.00 4.35
1836 1864 9.932699 CAAACATGCAAAATTAATTGTCTTGAA 57.067 25.926 13.02 5.13 32.80 2.69
1856 1884 7.197071 TGCTCGACTAACATAAAACAAACAT 57.803 32.000 0.00 0.00 0.00 2.71
1863 1891 6.072728 ACAAAGCATGCTCGACTAACATAAAA 60.073 34.615 22.93 0.00 0.00 1.52
1967 1995 4.080687 CCCGAACAGTTTTTATAACCCCA 58.919 43.478 0.00 0.00 0.00 4.96
1986 2014 3.068064 GGGGGTTTGCACATCCCG 61.068 66.667 15.13 0.00 41.92 5.14
2087 2117 9.537192 CATGCTCATGTTATTTCCACAATTATT 57.463 29.630 1.84 0.00 34.23 1.40
2109 2140 3.455469 GCCAAGTCTGGGCCATGC 61.455 66.667 6.72 2.50 45.87 4.06
2141 2172 7.489113 GGTTACGAAATCTCATAAACGGTAAGA 59.511 37.037 0.00 0.00 0.00 2.10
2162 2200 1.869132 ACAAACCTTTCGAGCGGTTAC 59.131 47.619 17.46 0.00 42.42 2.50
2187 2225 4.536090 TGGAGATCCAAGAGAAGGCTTTTA 59.464 41.667 0.00 0.00 44.35 1.52
2252 2290 5.610398 TCAGAAAACTAGCAATGACTGACA 58.390 37.500 0.00 0.00 0.00 3.58
2283 2321 5.528690 TGCTCATAAATAAGCAGATCCACAC 59.471 40.000 0.00 0.00 43.30 3.82
2333 2372 9.014297 CAGAACAGTAAAGGATAAATGAACCTT 57.986 33.333 0.00 0.00 44.53 3.50
2340 2379 8.422577 AAAAGGCAGAACAGTAAAGGATAAAT 57.577 30.769 0.00 0.00 0.00 1.40
2347 2386 4.051237 GGCAAAAAGGCAGAACAGTAAAG 58.949 43.478 0.00 0.00 43.51 1.85
2542 2581 2.561478 TAGCCCCAAACTGACAAGTC 57.439 50.000 0.00 0.00 34.77 3.01
2683 2727 9.134734 TCAGTTTGTTTGATAGTTTGTTTGTTC 57.865 29.630 0.00 0.00 0.00 3.18
2750 2794 8.392612 TGTAAAAAGTATTTAAGGATACGCAGC 58.607 33.333 0.00 0.00 37.28 5.25
2774 2818 1.401761 TTTGAGTGCATGGTGCTTGT 58.598 45.000 3.41 0.00 45.31 3.16
2880 2925 3.079578 CAGCACATCCAACTGATCAACT 58.920 45.455 0.00 0.00 33.10 3.16
2889 2934 2.227388 CAGAAACCTCAGCACATCCAAC 59.773 50.000 0.00 0.00 0.00 3.77
2894 2939 3.777106 TCTTCAGAAACCTCAGCACAT 57.223 42.857 0.00 0.00 0.00 3.21
2918 2964 6.655425 GGAAAGACCTATTGCTTAACAGAAGT 59.345 38.462 0.00 0.00 35.41 3.01
3142 8347 4.662966 ATTGGATAAGATGGGCAGCATA 57.337 40.909 0.00 0.00 0.00 3.14
3644 8857 5.757850 AAGAGCAAACCTTACTGAACTTG 57.242 39.130 0.00 0.00 0.00 3.16
3707 8922 2.224426 ACCAGGCATAAACAGAACGACA 60.224 45.455 0.00 0.00 0.00 4.35
3708 8923 2.159627 CACCAGGCATAAACAGAACGAC 59.840 50.000 0.00 0.00 0.00 4.34
3709 8924 2.422597 CACCAGGCATAAACAGAACGA 58.577 47.619 0.00 0.00 0.00 3.85
3710 8925 1.468520 CCACCAGGCATAAACAGAACG 59.531 52.381 0.00 0.00 0.00 3.95
3711 8926 1.818674 CCCACCAGGCATAAACAGAAC 59.181 52.381 0.00 0.00 0.00 3.01
3712 8927 1.427368 ACCCACCAGGCATAAACAGAA 59.573 47.619 0.00 0.00 40.58 3.02
3713 8928 1.072266 ACCCACCAGGCATAAACAGA 58.928 50.000 0.00 0.00 40.58 3.41
3714 8929 1.176527 CACCCACCAGGCATAAACAG 58.823 55.000 0.00 0.00 40.58 3.16
3735 8951 7.909267 TGCACTTCTCATTATTGATAAGAACG 58.091 34.615 15.62 7.78 37.96 3.95
3743 8959 8.043113 ACTAGTTCATGCACTTCTCATTATTGA 58.957 33.333 2.60 0.00 0.00 2.57
3747 8963 6.813649 GTCACTAGTTCATGCACTTCTCATTA 59.186 38.462 2.60 0.00 0.00 1.90
4306 12180 7.366513 TGTTGCAATTCGAGTTATTCATCAAA 58.633 30.769 0.59 0.00 0.00 2.69
4374 12248 1.579429 AAAAATGACTGCGCCGTCC 59.421 52.632 26.14 11.10 32.97 4.79
4408 12327 8.693120 TGTACAAAGATATAGACGAAGGATCT 57.307 34.615 0.00 0.00 0.00 2.75
4415 12334 6.399639 TGGCATGTACAAAGATATAGACGA 57.600 37.500 0.00 0.00 0.00 4.20
4416 12335 7.658179 AATGGCATGTACAAAGATATAGACG 57.342 36.000 0.00 0.00 0.00 4.18
4431 12354 2.428171 GCATGTTGGTCTAATGGCATGT 59.572 45.455 0.00 0.00 36.88 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.