Multiple sequence alignment - TraesCS7A01G160900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G160900 chr7A 100.000 5023 0 0 1 5023 117089760 117084738 0.000000e+00 9276.0
1 TraesCS7A01G160900 chr7A 100.000 1460 0 0 5298 6757 117084463 117083004 0.000000e+00 2697.0
2 TraesCS7A01G160900 chr7D 91.559 3175 178 42 476 3599 112133218 112130083 0.000000e+00 4296.0
3 TraesCS7A01G160900 chr7D 92.946 808 48 4 5298 6098 112117551 112116746 0.000000e+00 1168.0
4 TraesCS7A01G160900 chr7D 90.019 521 33 6 4243 4763 112129072 112128571 0.000000e+00 656.0
5 TraesCS7A01G160900 chr7D 96.078 255 10 0 4748 5002 112117836 112117582 3.770000e-112 416.0
6 TraesCS7A01G160900 chr7D 91.216 296 22 3 3591 3884 112129518 112129225 3.800000e-107 399.0
7 TraesCS7A01G160900 chr7D 89.116 294 27 5 125 417 112133534 112133245 1.790000e-95 361.0
8 TraesCS7A01G160900 chr7D 91.275 149 7 4 3936 4078 112129219 112129071 1.490000e-46 198.0
9 TraesCS7A01G160900 chr7D 84.722 72 9 2 2017 2087 60022662 60022592 3.380000e-08 71.3
10 TraesCS7A01G160900 chr7B 92.193 2011 94 20 1257 3217 71592504 71590507 0.000000e+00 2785.0
11 TraesCS7A01G160900 chr7B 90.402 1469 98 24 5298 6757 71578700 71577266 0.000000e+00 1892.0
12 TraesCS7A01G160900 chr7B 93.571 560 36 0 4443 5002 71579310 71578751 0.000000e+00 835.0
13 TraesCS7A01G160900 chr7B 90.206 388 27 4 3213 3599 71590481 71590104 4.710000e-136 496.0
14 TraesCS7A01G160900 chr7B 88.587 368 29 4 898 1262 71598082 71597725 1.040000e-117 435.0
15 TraesCS7A01G160900 chr7B 90.210 286 24 3 3594 3877 71589540 71589257 2.980000e-98 370.0
16 TraesCS7A01G160900 chr7B 86.880 343 27 9 564 888 71621750 71621408 1.070000e-97 368.0
17 TraesCS7A01G160900 chr7B 86.127 346 34 9 92 427 71622416 71622075 1.790000e-95 361.0
18 TraesCS7A01G160900 chr7B 92.727 165 11 1 4247 4410 71579724 71579560 3.150000e-58 237.0
19 TraesCS7A01G160900 chr7B 93.103 145 8 2 3936 4078 71589250 71589106 1.910000e-50 211.0
20 TraesCS7A01G160900 chr4A 78.491 623 99 24 5999 6603 38575764 38575159 6.400000e-100 375.0
21 TraesCS7A01G160900 chr4A 93.529 170 11 0 4074 4243 149031237 149031406 3.130000e-63 254.0
22 TraesCS7A01G160900 chr4A 91.667 180 14 1 4064 4243 724811102 724811280 1.460000e-61 248.0
23 TraesCS7A01G160900 chr2B 79.065 492 82 13 5298 5783 12592386 12592862 1.090000e-82 318.0
24 TraesCS7A01G160900 chr2B 90.155 193 16 3 4052 4241 689781913 689781721 1.460000e-61 248.0
25 TraesCS7A01G160900 chr2B 85.650 223 23 4 2845 3067 12950048 12950261 6.820000e-55 226.0
26 TraesCS7A01G160900 chr2B 84.753 223 25 4 2845 3067 11461838 11461625 1.480000e-51 215.0
27 TraesCS7A01G160900 chr2D 78.906 512 72 17 4446 4928 9637880 9638384 1.410000e-81 315.0
28 TraesCS7A01G160900 chr2D 90.811 185 16 1 4057 4241 609886772 609886955 5.230000e-61 246.0
29 TraesCS7A01G160900 chr2D 77.243 457 76 15 4493 4928 9623636 9624085 6.770000e-60 243.0
30 TraesCS7A01G160900 chr2D 84.507 213 24 6 2855 3067 9636430 9636633 1.150000e-47 202.0
31 TraesCS7A01G160900 chr2D 91.129 124 11 0 2546 2669 9636207 9636330 1.170000e-37 169.0
32 TraesCS7A01G160900 chr2D 84.416 77 7 5 6075 6150 373808744 373808672 3.380000e-08 71.3
33 TraesCS7A01G160900 chr2D 100.000 30 0 0 6092 6121 471966575 471966604 1.000000e-03 56.5
34 TraesCS7A01G160900 chr2A 78.125 512 76 19 4446 4928 8722011 8722515 6.630000e-75 292.0
35 TraesCS7A01G160900 chr3B 92.350 183 12 1 4072 4254 111133824 111133644 6.720000e-65 259.0
36 TraesCS7A01G160900 chr3B 96.000 50 2 0 2327 2376 766930562 766930611 1.560000e-11 82.4
37 TraesCS7A01G160900 chr3D 93.103 174 12 0 4074 4247 105119473 105119300 8.700000e-64 255.0
38 TraesCS7A01G160900 chr3D 92.135 178 13 1 4069 4245 412074479 412074656 4.050000e-62 250.0
39 TraesCS7A01G160900 chr3D 98.000 50 1 0 2327 2376 576794300 576794251 3.360000e-13 87.9
40 TraesCS7A01G160900 chr1B 93.529 170 11 0 4074 4243 322414907 322414738 3.130000e-63 254.0
41 TraesCS7A01G160900 chr1B 100.000 50 0 0 2327 2376 345325244 345325195 7.220000e-15 93.5
42 TraesCS7A01G160900 chr6D 93.529 170 10 1 4073 4241 323285696 323285865 1.120000e-62 252.0
43 TraesCS7A01G160900 chr4D 86.099 223 30 1 2846 3067 505435173 505434951 8.760000e-59 239.0
44 TraesCS7A01G160900 chr5A 83.203 256 36 3 2856 3104 689917877 689917622 1.900000e-55 228.0
45 TraesCS7A01G160900 chr5A 95.402 87 4 0 4 90 702040112 702040026 9.140000e-29 139.0
46 TraesCS7A01G160900 chr4B 82.949 217 37 0 2851 3067 652290347 652290131 5.350000e-46 196.0
47 TraesCS7A01G160900 chr4B 95.833 48 2 0 2329 2376 72653333 72653380 2.020000e-10 78.7
48 TraesCS7A01G160900 chr6A 94.505 91 4 1 1 90 420094852 420094942 9.140000e-29 139.0
49 TraesCS7A01G160900 chr3A 94.318 88 4 1 4 90 730908500 730908587 4.250000e-27 134.0
50 TraesCS7A01G160900 chr3A 88.732 71 5 3 2327 2397 693198172 693198239 4.340000e-12 84.2
51 TraesCS7A01G160900 chr1A 100.000 48 0 0 2327 2374 335033541 335033494 9.330000e-14 89.8
52 TraesCS7A01G160900 chr1D 98.000 50 1 0 2327 2376 267789480 267789529 3.360000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G160900 chr7A 117083004 117089760 6756 True 5986.500000 9276 100.000000 1 6757 2 chr7A.!!$R1 6756
1 TraesCS7A01G160900 chr7D 112128571 112133534 4963 True 1182.000000 4296 90.637000 125 4763 5 chr7D.!!$R3 4638
2 TraesCS7A01G160900 chr7D 112116746 112117836 1090 True 792.000000 1168 94.512000 4748 6098 2 chr7D.!!$R2 1350
3 TraesCS7A01G160900 chr7B 71577266 71579724 2458 True 988.000000 1892 92.233333 4247 6757 3 chr7B.!!$R2 2510
4 TraesCS7A01G160900 chr7B 71589106 71592504 3398 True 965.500000 2785 91.428000 1257 4078 4 chr7B.!!$R3 2821
5 TraesCS7A01G160900 chr7B 71621408 71622416 1008 True 364.500000 368 86.503500 92 888 2 chr7B.!!$R4 796
6 TraesCS7A01G160900 chr4A 38575159 38575764 605 True 375.000000 375 78.491000 5999 6603 1 chr4A.!!$R1 604
7 TraesCS7A01G160900 chr2D 9636207 9638384 2177 False 228.666667 315 84.847333 2546 4928 3 chr2D.!!$F4 2382
8 TraesCS7A01G160900 chr2A 8722011 8722515 504 False 292.000000 292 78.125000 4446 4928 1 chr2A.!!$F1 482

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 481 0.107410 AAATATTGCGCTCGGTCCCA 60.107 50.0 9.73 0.00 0.00 4.37 F
1049 1310 0.106217 CTCCTCCTCCTGGTCTCCTC 60.106 65.0 0.00 0.00 34.23 3.71 F
1685 1951 0.379316 TACGACGGATGGTGATCACG 59.621 55.0 19.33 10.24 0.00 4.35 F
3010 3343 0.761323 TGTCTGACGGGAAGGAACCA 60.761 55.0 2.98 0.00 0.00 3.67 F
3655 4993 0.176910 TCCATCGCAATGCCGAACTA 59.823 50.0 0.00 0.00 41.01 2.24 F
4417 5772 0.462789 GGCTTCGTCCCGGAATCTAA 59.537 55.0 0.73 0.00 0.00 2.10 F
5401 6987 0.324614 TCAAGGAAGCGAAGGATGCA 59.675 50.0 0.00 0.00 33.85 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2438 2729 0.322008 CTCAACCCAAGGCCTCTCAC 60.322 60.000 5.23 0.00 0.00 3.51 R
2713 3014 0.173255 AACACCAACAGCAGCAACAC 59.827 50.000 0.00 0.00 0.00 3.32 R
3199 3541 2.264813 CAAGCATTGTAGCATTGCACC 58.735 47.619 11.91 0.92 42.34 5.01 R
4775 6361 0.598562 GACGTCCTCTCTGCACTTGA 59.401 55.000 3.51 0.00 0.00 3.02 R
5401 6987 0.263765 TAGCTCGGACCCTTGGGTAT 59.736 55.000 11.86 0.00 0.00 2.73 R
5729 7318 0.179056 CACGGAGCCGGTTTATGGAT 60.179 55.000 14.07 0.00 44.69 3.41 R
6711 8316 0.397957 TTCCGGCCTGTAGCTATCCA 60.398 55.000 0.00 0.00 43.05 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.262323 GTCATCGAGACTATTACAAGCAAC 57.738 41.667 7.50 0.00 44.09 4.17
37 38 5.232414 GTCATCGAGACTATTACAAGCAACC 59.768 44.000 7.50 0.00 44.09 3.77
38 39 3.766151 TCGAGACTATTACAAGCAACCG 58.234 45.455 0.00 0.00 0.00 4.44
39 40 2.858344 CGAGACTATTACAAGCAACCGG 59.142 50.000 0.00 0.00 0.00 5.28
40 41 3.195661 GAGACTATTACAAGCAACCGGG 58.804 50.000 6.32 0.00 0.00 5.73
41 42 2.570302 AGACTATTACAAGCAACCGGGT 59.430 45.455 6.32 0.00 0.00 5.28
42 43 2.934553 GACTATTACAAGCAACCGGGTC 59.065 50.000 6.32 0.00 0.00 4.46
43 44 2.570302 ACTATTACAAGCAACCGGGTCT 59.430 45.455 6.32 0.00 0.00 3.85
44 45 1.821216 ATTACAAGCAACCGGGTCTG 58.179 50.000 6.32 0.47 0.00 3.51
45 46 0.887387 TTACAAGCAACCGGGTCTGC 60.887 55.000 19.88 19.88 38.91 4.26
46 47 2.741486 TACAAGCAACCGGGTCTGCC 62.741 60.000 22.26 10.82 39.47 4.85
47 48 3.884774 AAGCAACCGGGTCTGCCA 61.885 61.111 22.26 0.00 39.47 4.92
48 49 3.850098 AAGCAACCGGGTCTGCCAG 62.850 63.158 22.26 0.00 39.47 4.85
49 50 4.329545 GCAACCGGGTCTGCCAGA 62.330 66.667 17.92 0.00 36.17 3.86
50 51 2.429930 CAACCGGGTCTGCCAGAA 59.570 61.111 6.32 0.00 36.17 3.02
51 52 1.672356 CAACCGGGTCTGCCAGAAG 60.672 63.158 6.32 0.00 36.17 2.85
52 53 2.147387 AACCGGGTCTGCCAGAAGT 61.147 57.895 6.32 0.00 36.17 3.01
53 54 0.834687 AACCGGGTCTGCCAGAAGTA 60.835 55.000 6.32 0.00 36.17 2.24
54 55 0.834687 ACCGGGTCTGCCAGAAGTAA 60.835 55.000 6.32 0.00 36.17 2.24
55 56 0.391263 CCGGGTCTGCCAGAAGTAAC 60.391 60.000 0.00 0.00 36.17 2.50
56 57 0.320374 CGGGTCTGCCAGAAGTAACA 59.680 55.000 0.00 0.00 36.17 2.41
57 58 1.673033 CGGGTCTGCCAGAAGTAACAG 60.673 57.143 0.00 0.00 36.17 3.16
58 59 1.623811 GGGTCTGCCAGAAGTAACAGA 59.376 52.381 0.00 0.00 36.84 3.41
61 62 2.325484 TCTGCCAGAAGTAACAGACCA 58.675 47.619 0.00 0.00 34.35 4.02
62 63 2.300152 TCTGCCAGAAGTAACAGACCAG 59.700 50.000 0.00 0.00 34.35 4.00
63 64 2.300152 CTGCCAGAAGTAACAGACCAGA 59.700 50.000 0.00 0.00 31.67 3.86
64 65 2.703536 TGCCAGAAGTAACAGACCAGAA 59.296 45.455 0.00 0.00 0.00 3.02
65 66 3.135712 TGCCAGAAGTAACAGACCAGAAA 59.864 43.478 0.00 0.00 0.00 2.52
66 67 4.134563 GCCAGAAGTAACAGACCAGAAAA 58.865 43.478 0.00 0.00 0.00 2.29
67 68 4.023963 GCCAGAAGTAACAGACCAGAAAAC 60.024 45.833 0.00 0.00 0.00 2.43
68 69 5.123227 CCAGAAGTAACAGACCAGAAAACA 58.877 41.667 0.00 0.00 0.00 2.83
69 70 5.237344 CCAGAAGTAACAGACCAGAAAACAG 59.763 44.000 0.00 0.00 0.00 3.16
70 71 6.049149 CAGAAGTAACAGACCAGAAAACAGA 58.951 40.000 0.00 0.00 0.00 3.41
71 72 6.538742 CAGAAGTAACAGACCAGAAAACAGAA 59.461 38.462 0.00 0.00 0.00 3.02
72 73 6.539103 AGAAGTAACAGACCAGAAAACAGAAC 59.461 38.462 0.00 0.00 0.00 3.01
73 74 4.809426 AGTAACAGACCAGAAAACAGAACG 59.191 41.667 0.00 0.00 0.00 3.95
74 75 3.536956 ACAGACCAGAAAACAGAACGA 57.463 42.857 0.00 0.00 0.00 3.85
75 76 4.073293 ACAGACCAGAAAACAGAACGAT 57.927 40.909 0.00 0.00 0.00 3.73
76 77 4.058817 ACAGACCAGAAAACAGAACGATC 58.941 43.478 0.00 0.00 0.00 3.69
77 78 4.202264 ACAGACCAGAAAACAGAACGATCT 60.202 41.667 0.00 0.00 35.88 2.75
78 79 5.010719 ACAGACCAGAAAACAGAACGATCTA 59.989 40.000 0.00 0.00 33.50 1.98
79 80 5.346281 CAGACCAGAAAACAGAACGATCTAC 59.654 44.000 0.00 0.00 33.50 2.59
80 81 5.010719 AGACCAGAAAACAGAACGATCTACA 59.989 40.000 0.00 0.00 33.50 2.74
81 82 5.794894 ACCAGAAAACAGAACGATCTACAT 58.205 37.500 0.00 0.00 33.50 2.29
82 83 5.869888 ACCAGAAAACAGAACGATCTACATC 59.130 40.000 0.00 0.00 33.50 3.06
83 84 5.292101 CCAGAAAACAGAACGATCTACATCC 59.708 44.000 0.00 0.00 33.50 3.51
84 85 5.292101 CAGAAAACAGAACGATCTACATCCC 59.708 44.000 0.00 0.00 33.50 3.85
85 86 5.187967 AGAAAACAGAACGATCTACATCCCT 59.812 40.000 0.00 0.00 33.50 4.20
86 87 6.380274 AGAAAACAGAACGATCTACATCCCTA 59.620 38.462 0.00 0.00 33.50 3.53
87 88 5.776173 AACAGAACGATCTACATCCCTAG 57.224 43.478 0.00 0.00 33.50 3.02
88 89 5.050126 ACAGAACGATCTACATCCCTAGA 57.950 43.478 0.00 0.00 33.50 2.43
89 90 5.446860 ACAGAACGATCTACATCCCTAGAA 58.553 41.667 0.00 0.00 33.50 2.10
90 91 5.892119 ACAGAACGATCTACATCCCTAGAAA 59.108 40.000 0.00 0.00 33.50 2.52
98 99 6.471233 TCTACATCCCTAGAAACTCATGTG 57.529 41.667 0.00 0.00 0.00 3.21
100 101 3.200825 ACATCCCTAGAAACTCATGTGGG 59.799 47.826 0.00 0.00 34.76 4.61
101 102 3.199442 TCCCTAGAAACTCATGTGGGA 57.801 47.619 0.00 0.00 39.66 4.37
103 104 4.890988 TCCCTAGAAACTCATGTGGGATA 58.109 43.478 0.00 0.00 37.36 2.59
120 121 5.006746 GTGGGATATTGTCTACGCTTTCTTG 59.993 44.000 0.00 0.00 0.00 3.02
143 144 1.295792 TGTTCTGCTCGTGTTTGGAC 58.704 50.000 0.00 0.00 0.00 4.02
152 153 1.067425 TCGTGTTTGGACATACCTCCG 60.067 52.381 0.00 0.00 38.23 4.63
156 157 2.289819 TGTTTGGACATACCTCCGGAAC 60.290 50.000 5.23 0.00 39.86 3.62
186 187 1.668419 ATAGCTACGCTGCCCTTTTG 58.332 50.000 0.00 0.00 40.10 2.44
189 190 1.971167 CTACGCTGCCCTTTTGCCA 60.971 57.895 0.00 0.00 0.00 4.92
197 198 4.082125 GCTGCCCTTTTGCCATATATACT 58.918 43.478 0.00 0.00 0.00 2.12
217 219 3.117701 ACTCTTCCGATGGATCTCTCTCA 60.118 47.826 0.00 0.00 0.00 3.27
247 249 3.625313 CACCCCACCAAAACAATGAAAAC 59.375 43.478 0.00 0.00 0.00 2.43
269 271 1.250476 CAACACAAAATAGCTCGCGC 58.750 50.000 0.00 0.00 0.00 6.86
292 294 4.541779 GCGAACACACAACAATGGATAAA 58.458 39.130 0.00 0.00 0.00 1.40
294 296 4.915085 CGAACACACAACAATGGATAAACC 59.085 41.667 0.00 0.00 39.54 3.27
324 326 2.267351 CCGGTGTGGCAAAGCATGA 61.267 57.895 7.75 0.00 0.00 3.07
343 348 5.300539 GCATGAGTCTGTTCCTAGTCTCATA 59.699 44.000 12.67 0.00 45.36 2.15
352 357 7.284261 TCTGTTCCTAGTCTCATAGATGTTCTG 59.716 40.741 0.00 0.00 0.00 3.02
394 406 6.541754 GCGTCATTCGTATGATGACTATAC 57.458 41.667 23.63 5.31 46.37 1.47
457 477 3.689649 AGAAAGAAAATATTGCGCTCGGT 59.310 39.130 9.73 0.00 0.00 4.69
458 478 3.675467 AAGAAAATATTGCGCTCGGTC 57.325 42.857 9.73 0.00 0.00 4.79
460 480 1.002792 GAAAATATTGCGCTCGGTCCC 60.003 52.381 9.73 0.00 0.00 4.46
461 481 0.107410 AAATATTGCGCTCGGTCCCA 60.107 50.000 9.73 0.00 0.00 4.37
463 483 0.814010 ATATTGCGCTCGGTCCCAAC 60.814 55.000 9.73 0.00 0.00 3.77
470 490 3.998156 TCGGTCCCAACGAGAGAG 58.002 61.111 0.00 0.00 35.12 3.20
472 492 0.677098 TCGGTCCCAACGAGAGAGAG 60.677 60.000 0.00 0.00 35.12 3.20
473 493 0.677098 CGGTCCCAACGAGAGAGAGA 60.677 60.000 0.00 0.00 0.00 3.10
474 494 1.546961 GGTCCCAACGAGAGAGAGAA 58.453 55.000 0.00 0.00 0.00 2.87
501 521 4.735132 CGAGGGCGCAAGAACCGA 62.735 66.667 10.83 0.00 40.35 4.69
507 527 2.434359 CGCAAGAACCGACCCCTC 60.434 66.667 0.00 0.00 43.02 4.30
510 530 1.880819 GCAAGAACCGACCCCTCGTA 61.881 60.000 0.00 0.00 38.32 3.43
559 798 4.582459 GAACGCTCGATAAGTACGTAGTT 58.418 43.478 19.04 19.04 37.78 2.24
562 801 3.247173 CGCTCGATAAGTACGTAGTTCCT 59.753 47.826 18.66 8.21 37.78 3.36
653 892 3.128242 CAGACAGCAACTGATTTGGATCC 59.872 47.826 4.20 4.20 37.54 3.36
668 907 7.779326 TGATTTGGATCCATACTTGATTAGCAA 59.221 33.333 17.06 1.90 34.73 3.91
669 908 6.942532 TTGGATCCATACTTGATTAGCAAC 57.057 37.500 17.06 0.00 31.96 4.17
670 909 6.252599 TGGATCCATACTTGATTAGCAACT 57.747 37.500 11.44 0.00 31.96 3.16
671 910 7.373617 TGGATCCATACTTGATTAGCAACTA 57.626 36.000 11.44 0.00 31.96 2.24
689 944 6.797215 GCAACTAGCAAACTTTGTAATTTCG 58.203 36.000 3.48 0.00 44.79 3.46
717 972 7.013655 CAGATCTTTTCTTCTTTTGGAGTCCAA 59.986 37.037 21.05 21.05 35.42 3.53
740 995 2.864097 GCAGCCACATATAGGTCTGTCG 60.864 54.545 7.73 0.00 34.72 4.35
800 1055 2.019249 TGCGCTAGTGTTATCCGTAGT 58.981 47.619 9.73 0.00 0.00 2.73
824 1081 5.369833 ACTATCACGTAGAGTACTGCAGAT 58.630 41.667 23.35 7.41 34.38 2.90
839 1096 2.236146 TGCAGATGTTCCATACGAAGGT 59.764 45.455 0.00 0.00 0.00 3.50
844 1101 1.483415 TGTTCCATACGAAGGTAGCCC 59.517 52.381 0.00 0.00 30.81 5.19
866 1123 1.495584 TTCGGACTGTTGAGTTGCGC 61.496 55.000 0.00 0.00 30.16 6.09
906 1163 0.185175 GCCAACTAAATCCCGGGGAT 59.815 55.000 23.21 23.21 45.46 3.85
912 1169 1.352352 CTAAATCCCGGGGATGCTCAT 59.648 52.381 28.86 10.41 42.27 2.90
914 1171 1.355718 AATCCCGGGGATGCTCATGT 61.356 55.000 28.86 8.85 42.27 3.21
930 1187 1.080638 ATGTAAAAGTCCTGGCCCCA 58.919 50.000 0.00 0.00 0.00 4.96
945 1206 1.852626 CCCACCCTCTCACCCCTTT 60.853 63.158 0.00 0.00 0.00 3.11
949 1210 2.109304 CCACCCTCTCACCCCTTTAAAA 59.891 50.000 0.00 0.00 0.00 1.52
950 1211 3.421844 CACCCTCTCACCCCTTTAAAAG 58.578 50.000 0.00 0.00 0.00 2.27
953 1214 3.564352 CCCTCTCACCCCTTTAAAAGCAT 60.564 47.826 0.00 0.00 0.00 3.79
954 1215 4.325030 CCCTCTCACCCCTTTAAAAGCATA 60.325 45.833 0.00 0.00 0.00 3.14
955 1216 4.640647 CCTCTCACCCCTTTAAAAGCATAC 59.359 45.833 0.00 0.00 0.00 2.39
959 1220 3.194755 CACCCCTTTAAAAGCATACCCAC 59.805 47.826 0.00 0.00 0.00 4.61
972 1233 0.323302 TACCCACTCGAGCAATTGCA 59.677 50.000 30.89 10.88 45.16 4.08
978 1239 1.066573 ACTCGAGCAATTGCAGTAGCT 60.067 47.619 30.89 10.32 45.16 3.32
979 1240 2.166459 ACTCGAGCAATTGCAGTAGCTA 59.834 45.455 30.89 8.94 45.16 3.32
980 1241 2.537625 CTCGAGCAATTGCAGTAGCTAC 59.462 50.000 30.89 16.43 45.16 3.58
1027 1288 2.922234 CCTTGGGCATCCTCCTCC 59.078 66.667 0.00 0.00 0.00 4.30
1042 1303 1.232792 CTCCTCCTCCTCCTCCTGG 59.767 68.421 0.00 0.00 0.00 4.45
1049 1310 0.106217 CTCCTCCTCCTGGTCTCCTC 60.106 65.000 0.00 0.00 34.23 3.71
1052 1313 0.750182 CTCCTCCTGGTCTCCTCGTC 60.750 65.000 0.00 0.00 34.23 4.20
1075 1336 4.443266 GCTCTGCCTTCGCCGACT 62.443 66.667 0.00 0.00 0.00 4.18
1077 1338 2.989253 TCTGCCTTCGCCGACTCA 60.989 61.111 0.00 0.00 0.00 3.41
1146 1407 4.078516 ACGCCAGGGAAGTACGCC 62.079 66.667 0.00 0.00 0.00 5.68
1155 1416 1.405121 GGGAAGTACGCCGTGATCTTT 60.405 52.381 0.00 0.00 0.00 2.52
1161 1422 2.094659 CGCCGTGATCTTTGACGCT 61.095 57.895 0.00 0.00 34.18 5.07
1191 1452 1.841663 GCACGCGTGTCCATGTCTTT 61.842 55.000 36.80 0.00 0.00 2.52
1227 1488 2.328639 GACCTCGTCGAGATCGGC 59.671 66.667 23.74 5.42 41.13 5.54
1267 1528 5.622346 TGCCAAGGTATATATGACACACA 57.378 39.130 0.00 0.00 0.00 3.72
1301 1562 4.440880 AGCAAACTCTAGCAGAATAGCTG 58.559 43.478 0.00 0.00 46.11 4.24
1329 1590 4.446719 GGTTCGATCACCGTATTAACCATC 59.553 45.833 0.00 0.00 39.67 3.51
1410 1676 5.880332 GTCATAGTTTATTGAGTGCCCTTCA 59.120 40.000 0.00 0.00 0.00 3.02
1454 1720 4.646877 GGCGACCCGGGGTTTTCA 62.647 66.667 27.92 0.00 35.25 2.69
1488 1754 7.148639 CGCATTCCTTATAATAGTTGCGTGTAT 60.149 37.037 17.66 0.00 44.64 2.29
1511 1777 0.881118 ACATGTGGCGCGAAGAAAAT 59.119 45.000 12.10 0.00 0.00 1.82
1586 1852 3.591527 TCCTATTGACAAGTGGGTTCCAT 59.408 43.478 8.74 0.00 35.28 3.41
1601 1867 6.980397 GTGGGTTCCATAATTATGAAAGCAAG 59.020 38.462 22.76 8.53 35.28 4.01
1606 1872 9.899226 GTTCCATAATTATGAAAGCAAGATACC 57.101 33.333 24.17 0.00 35.75 2.73
1607 1873 8.322906 TCCATAATTATGAAAGCAAGATACCG 57.677 34.615 24.17 4.97 35.75 4.02
1615 1881 6.032956 TGAAAGCAAGATACCGAGACTTTA 57.967 37.500 0.00 0.00 0.00 1.85
1685 1951 0.379316 TACGACGGATGGTGATCACG 59.621 55.000 19.33 10.24 0.00 4.35
1693 1959 3.603532 GGATGGTGATCACGCATATGAT 58.396 45.455 22.12 7.94 42.15 2.45
1759 2025 4.461198 TCTTGTTTCTTTCTCACCCCTTC 58.539 43.478 0.00 0.00 0.00 3.46
2050 2340 1.364171 CGGACTCAGGCTTATCGGG 59.636 63.158 0.00 0.00 0.00 5.14
2080 2370 2.029649 GGCAGAGCAAATTCTTGAAGCA 60.030 45.455 0.00 0.00 34.14 3.91
2108 2398 7.560796 TTTTTCATCTCTTAGACTTCTCCCT 57.439 36.000 0.00 0.00 0.00 4.20
2131 2421 6.428159 CCTACACAAGTATCATAAGAATGGCC 59.572 42.308 0.00 0.00 33.61 5.36
2459 2750 2.129555 GAGAGGCCTTGGGTTGAGCA 62.130 60.000 6.77 0.00 0.00 4.26
2463 2754 1.187567 GGCCTTGGGTTGAGCACATT 61.188 55.000 0.00 0.00 0.00 2.71
2669 2970 8.368668 GGATCTTACATATGGGTATATGCTACC 58.631 40.741 7.80 0.00 46.60 3.18
2677 2978 4.425772 TGGGTATATGCTACCACTGCTAT 58.574 43.478 3.31 0.00 39.31 2.97
2706 3007 6.015688 TGTTGTTGCTGCTACTAGTACTACTT 60.016 38.462 14.81 0.00 0.00 2.24
2707 3008 6.192234 TGTTGCTGCTACTAGTACTACTTC 57.808 41.667 14.81 0.00 0.00 3.01
2709 3010 6.127980 TGTTGCTGCTACTAGTACTACTTCTG 60.128 42.308 14.81 0.00 0.00 3.02
2711 3012 5.944599 TGCTGCTACTAGTACTACTTCTGTT 59.055 40.000 0.00 0.00 0.00 3.16
2712 3013 6.127980 TGCTGCTACTAGTACTACTTCTGTTG 60.128 42.308 0.00 0.00 0.00 3.33
2713 3014 6.678409 GCTGCTACTAGTACTACTTCTGTTGG 60.678 46.154 0.00 0.00 0.00 3.77
2793 3115 8.034313 TGGCCTTAATTACTTCATCTATCTGT 57.966 34.615 3.32 0.00 0.00 3.41
2794 3116 7.933577 TGGCCTTAATTACTTCATCTATCTGTG 59.066 37.037 3.32 0.00 0.00 3.66
3010 3343 0.761323 TGTCTGACGGGAAGGAACCA 60.761 55.000 2.98 0.00 0.00 3.67
3081 3423 2.022918 ACAGGTTGGACCCTATAGCTCT 60.023 50.000 0.00 0.00 39.75 4.09
3082 3424 2.630580 CAGGTTGGACCCTATAGCTCTC 59.369 54.545 0.00 0.00 39.75 3.20
3141 3483 3.201930 TGCAATTCTACAAGGCCCTATGA 59.798 43.478 0.00 0.00 0.00 2.15
3172 3514 5.042463 GCTTCCCTAATTAAGCTCCTCTT 57.958 43.478 3.85 0.00 43.77 2.85
3175 3517 7.054751 GCTTCCCTAATTAAGCTCCTCTTTTA 58.945 38.462 3.85 0.00 43.77 1.52
3176 3518 7.227711 GCTTCCCTAATTAAGCTCCTCTTTTAG 59.772 40.741 3.85 0.00 43.77 1.85
3214 3556 6.528537 TCTTAATTGGTGCAATGCTACAAT 57.471 33.333 17.46 17.46 37.25 2.71
3269 3672 1.662517 TTGCAGGCACATATACACCG 58.337 50.000 0.00 0.00 0.00 4.94
3286 3689 4.145807 ACACCGGTTAATTTTGGACATGA 58.854 39.130 2.97 0.00 0.00 3.07
3301 3704 7.675161 TTGGACATGATTCTAGGATAACAGA 57.325 36.000 0.00 0.00 0.00 3.41
3303 3706 8.267620 TGGACATGATTCTAGGATAACAGAAT 57.732 34.615 0.00 0.00 42.72 2.40
3310 3713 2.510768 AGGATAACAGAATCGCCGAC 57.489 50.000 0.00 0.00 0.00 4.79
3506 4270 5.291128 GTGGTATGTGAAGAATACACGGAAG 59.709 44.000 0.00 0.00 40.61 3.46
3507 4271 4.270325 GGTATGTGAAGAATACACGGAAGC 59.730 45.833 0.00 0.00 40.61 3.86
3523 4287 4.803613 ACGGAAGCAAAAGTTCATTTGTTC 59.196 37.500 2.21 4.82 41.34 3.18
3540 4304 4.902443 TGTTCATACCTAAGCTCTCGAG 57.098 45.455 5.93 5.93 0.00 4.04
3560 4324 4.279420 CGAGTCATACAAGATGGATCCTCA 59.721 45.833 14.23 0.00 0.00 3.86
3578 4342 6.455360 TCCTCAATTCAAATAGAACCATGC 57.545 37.500 0.00 0.00 39.49 4.06
3583 4347 4.439305 TTCAAATAGAACCATGCTGTGC 57.561 40.909 0.00 0.00 0.00 4.57
3617 4955 3.587797 AAATAGAGAACGCTTGTCGGA 57.412 42.857 0.00 0.00 43.86 4.55
3655 4993 0.176910 TCCATCGCAATGCCGAACTA 59.823 50.000 0.00 0.00 41.01 2.24
3657 4995 0.583438 CATCGCAATGCCGAACTAGG 59.417 55.000 0.00 0.00 41.01 3.02
3718 5056 2.028130 GATGGTGTTGTGGTGGTTTCA 58.972 47.619 0.00 0.00 0.00 2.69
3722 5060 1.542030 GTGTTGTGGTGGTTTCACACA 59.458 47.619 0.00 0.00 43.75 3.72
3742 5080 1.375908 GTGCAAGGCATCGAGGTGA 60.376 57.895 0.00 0.00 41.91 4.02
3888 5228 5.458015 GGTGTATGTCAACTAAGCCAAAAC 58.542 41.667 0.00 0.00 0.00 2.43
3896 5236 5.009610 GTCAACTAAGCCAAAACAGAATGGA 59.990 40.000 0.00 0.00 43.62 3.41
3897 5237 5.241506 TCAACTAAGCCAAAACAGAATGGAG 59.758 40.000 0.00 0.00 43.62 3.86
3899 5239 0.883833 AGCCAAAACAGAATGGAGCG 59.116 50.000 0.00 0.00 43.62 5.03
3900 5240 0.598065 GCCAAAACAGAATGGAGCGT 59.402 50.000 0.00 0.00 43.62 5.07
3901 5241 1.666888 GCCAAAACAGAATGGAGCGTG 60.667 52.381 0.00 0.00 43.62 5.34
3902 5242 1.879380 CCAAAACAGAATGGAGCGTGA 59.121 47.619 0.00 0.00 43.62 4.35
3904 5244 3.495193 CAAAACAGAATGGAGCGTGATG 58.505 45.455 0.00 0.00 43.62 3.07
3905 5245 2.479566 AACAGAATGGAGCGTGATGT 57.520 45.000 0.00 0.00 43.62 3.06
3906 5246 1.730501 ACAGAATGGAGCGTGATGTG 58.269 50.000 0.00 0.00 43.62 3.21
3910 5250 3.005554 AGAATGGAGCGTGATGTGAAAG 58.994 45.455 0.00 0.00 0.00 2.62
3911 5251 1.089920 ATGGAGCGTGATGTGAAAGC 58.910 50.000 0.00 0.00 0.00 3.51
3912 5252 0.955428 TGGAGCGTGATGTGAAAGCC 60.955 55.000 0.00 0.00 0.00 4.35
3913 5253 0.955428 GGAGCGTGATGTGAAAGCCA 60.955 55.000 0.00 0.00 0.00 4.75
3914 5254 1.089920 GAGCGTGATGTGAAAGCCAT 58.910 50.000 0.00 0.00 0.00 4.40
3915 5255 2.279741 GAGCGTGATGTGAAAGCCATA 58.720 47.619 0.00 0.00 0.00 2.74
3916 5256 2.009774 AGCGTGATGTGAAAGCCATAC 58.990 47.619 0.00 0.00 0.00 2.39
3917 5257 2.009774 GCGTGATGTGAAAGCCATACT 58.990 47.619 0.00 0.00 0.00 2.12
3918 5258 2.030946 GCGTGATGTGAAAGCCATACTC 59.969 50.000 0.00 0.00 0.00 2.59
3919 5259 3.525537 CGTGATGTGAAAGCCATACTCT 58.474 45.455 0.00 0.00 0.00 3.24
3920 5260 3.553511 CGTGATGTGAAAGCCATACTCTC 59.446 47.826 0.00 0.00 0.00 3.20
3921 5261 4.679106 CGTGATGTGAAAGCCATACTCTCT 60.679 45.833 0.00 0.00 0.00 3.10
3925 5265 6.716628 TGATGTGAAAGCCATACTCTCTTTTT 59.283 34.615 0.00 0.00 30.97 1.94
3958 5298 1.851304 TGGGATCAATGTGAAAGCCC 58.149 50.000 0.00 0.00 37.05 5.19
3975 5315 1.532604 CCCTACTCTGTGCGTGGTGA 61.533 60.000 0.00 0.00 0.00 4.02
3980 5320 1.618837 ACTCTGTGCGTGGTGATAAGT 59.381 47.619 0.00 0.00 0.00 2.24
3990 5331 4.032900 GCGTGGTGATAAGTGTGTAAGATG 59.967 45.833 0.00 0.00 0.00 2.90
4070 5415 9.436957 GTGTCTCTTCTGTTTAGGAATCAAATA 57.563 33.333 0.00 0.00 0.00 1.40
4085 5430 9.052365 AGGAATCAAATATTATCTACTCCCTCC 57.948 37.037 0.00 0.00 0.00 4.30
4086 5431 8.826765 GGAATCAAATATTATCTACTCCCTCCA 58.173 37.037 0.00 0.00 0.00 3.86
4090 5435 8.826765 TCAAATATTATCTACTCCCTCCATTCC 58.173 37.037 0.00 0.00 0.00 3.01
4091 5436 8.605947 CAAATATTATCTACTCCCTCCATTCCA 58.394 37.037 0.00 0.00 0.00 3.53
4092 5437 8.757307 AATATTATCTACTCCCTCCATTCCAA 57.243 34.615 0.00 0.00 0.00 3.53
4093 5438 8.757307 ATATTATCTACTCCCTCCATTCCAAA 57.243 34.615 0.00 0.00 0.00 3.28
4094 5439 6.901615 TTATCTACTCCCTCCATTCCAAAA 57.098 37.500 0.00 0.00 0.00 2.44
4095 5440 7.465900 TTATCTACTCCCTCCATTCCAAAAT 57.534 36.000 0.00 0.00 0.00 1.82
4096 5441 8.575736 TTATCTACTCCCTCCATTCCAAAATA 57.424 34.615 0.00 0.00 0.00 1.40
4097 5442 7.654287 ATCTACTCCCTCCATTCCAAAATAT 57.346 36.000 0.00 0.00 0.00 1.28
4098 5443 8.757307 ATCTACTCCCTCCATTCCAAAATATA 57.243 34.615 0.00 0.00 0.00 0.86
4099 5444 8.757307 TCTACTCCCTCCATTCCAAAATATAT 57.243 34.615 0.00 0.00 0.00 0.86
4100 5445 8.605947 TCTACTCCCTCCATTCCAAAATATATG 58.394 37.037 0.00 0.00 0.00 1.78
4101 5446 7.166758 ACTCCCTCCATTCCAAAATATATGT 57.833 36.000 0.00 0.00 0.00 2.29
4102 5447 7.234355 ACTCCCTCCATTCCAAAATATATGTC 58.766 38.462 0.00 0.00 0.00 3.06
4103 5448 7.074237 ACTCCCTCCATTCCAAAATATATGTCT 59.926 37.037 0.00 0.00 0.00 3.41
4104 5449 7.825709 TCCCTCCATTCCAAAATATATGTCTT 58.174 34.615 0.00 0.00 0.00 3.01
4105 5450 8.288812 TCCCTCCATTCCAAAATATATGTCTTT 58.711 33.333 0.00 0.00 0.00 2.52
4106 5451 8.579863 CCCTCCATTCCAAAATATATGTCTTTC 58.420 37.037 0.00 0.00 0.00 2.62
4107 5452 9.359653 CCTCCATTCCAAAATATATGTCTTTCT 57.640 33.333 0.00 0.00 0.00 2.52
4124 5469 9.868277 ATGTCTTTCTAGAGATTCTAACAAGTG 57.132 33.333 0.00 0.00 30.68 3.16
4125 5470 9.078990 TGTCTTTCTAGAGATTCTAACAAGTGA 57.921 33.333 0.00 0.00 0.00 3.41
4126 5471 9.349145 GTCTTTCTAGAGATTCTAACAAGTGAC 57.651 37.037 0.00 0.00 0.00 3.67
4127 5472 9.303116 TCTTTCTAGAGATTCTAACAAGTGACT 57.697 33.333 0.00 0.00 0.00 3.41
4130 5475 9.516546 TTCTAGAGATTCTAACAAGTGACTACA 57.483 33.333 0.00 0.00 0.00 2.74
4131 5476 9.688091 TCTAGAGATTCTAACAAGTGACTACAT 57.312 33.333 0.00 0.00 0.00 2.29
4138 5483 8.703604 TTCTAACAAGTGACTACATATGAAGC 57.296 34.615 10.38 0.00 0.00 3.86
4139 5484 7.836842 TCTAACAAGTGACTACATATGAAGCA 58.163 34.615 10.38 0.00 0.00 3.91
4140 5485 8.311109 TCTAACAAGTGACTACATATGAAGCAA 58.689 33.333 10.38 0.00 0.00 3.91
4141 5486 7.744087 AACAAGTGACTACATATGAAGCAAA 57.256 32.000 10.38 0.00 0.00 3.68
4142 5487 7.133891 ACAAGTGACTACATATGAAGCAAAC 57.866 36.000 10.38 0.82 0.00 2.93
4143 5488 6.936900 ACAAGTGACTACATATGAAGCAAACT 59.063 34.615 10.38 3.12 0.00 2.66
4144 5489 6.974932 AGTGACTACATATGAAGCAAACTG 57.025 37.500 10.38 0.00 0.00 3.16
4145 5490 5.877012 AGTGACTACATATGAAGCAAACTGG 59.123 40.000 10.38 0.00 0.00 4.00
4146 5491 5.065218 GTGACTACATATGAAGCAAACTGGG 59.935 44.000 10.38 0.00 0.00 4.45
4147 5492 5.179452 ACTACATATGAAGCAAACTGGGT 57.821 39.130 10.38 0.00 0.00 4.51
4148 5493 4.943705 ACTACATATGAAGCAAACTGGGTG 59.056 41.667 10.38 0.00 0.00 4.61
4149 5494 4.032960 ACATATGAAGCAAACTGGGTGA 57.967 40.909 10.38 0.00 0.00 4.02
4150 5495 4.406456 ACATATGAAGCAAACTGGGTGAA 58.594 39.130 10.38 0.00 0.00 3.18
4151 5496 5.018809 ACATATGAAGCAAACTGGGTGAAT 58.981 37.500 10.38 0.00 0.00 2.57
4152 5497 5.126061 ACATATGAAGCAAACTGGGTGAATC 59.874 40.000 10.38 0.00 0.00 2.52
4153 5498 3.228188 TGAAGCAAACTGGGTGAATCT 57.772 42.857 0.00 0.00 0.00 2.40
4154 5499 4.365514 TGAAGCAAACTGGGTGAATCTA 57.634 40.909 0.00 0.00 0.00 1.98
4155 5500 4.072131 TGAAGCAAACTGGGTGAATCTAC 58.928 43.478 0.00 0.00 0.00 2.59
4156 5501 3.788227 AGCAAACTGGGTGAATCTACA 57.212 42.857 0.00 0.00 0.00 2.74
4157 5502 3.412386 AGCAAACTGGGTGAATCTACAC 58.588 45.455 0.00 0.00 39.70 2.90
4158 5503 3.073062 AGCAAACTGGGTGAATCTACACT 59.927 43.478 0.00 0.00 40.22 3.55
4159 5504 3.437049 GCAAACTGGGTGAATCTACACTC 59.563 47.826 0.00 0.00 41.16 3.51
4160 5505 4.804261 GCAAACTGGGTGAATCTACACTCT 60.804 45.833 0.00 0.00 41.33 3.24
4161 5506 5.568825 GCAAACTGGGTGAATCTACACTCTA 60.569 44.000 0.00 0.00 41.33 2.43
4162 5507 6.464222 CAAACTGGGTGAATCTACACTCTAA 58.536 40.000 0.00 0.00 41.33 2.10
4163 5508 6.681729 AACTGGGTGAATCTACACTCTAAA 57.318 37.500 0.00 0.00 41.33 1.85
4164 5509 6.681729 ACTGGGTGAATCTACACTCTAAAA 57.318 37.500 0.00 0.00 41.33 1.52
4165 5510 7.259088 ACTGGGTGAATCTACACTCTAAAAT 57.741 36.000 0.00 0.00 41.33 1.82
4166 5511 8.375493 ACTGGGTGAATCTACACTCTAAAATA 57.625 34.615 0.00 0.00 41.33 1.40
4167 5512 8.993424 ACTGGGTGAATCTACACTCTAAAATAT 58.007 33.333 0.00 0.00 41.33 1.28
4168 5513 9.265901 CTGGGTGAATCTACACTCTAAAATATG 57.734 37.037 0.00 0.00 41.33 1.78
4169 5514 8.768397 TGGGTGAATCTACACTCTAAAATATGT 58.232 33.333 0.00 0.00 41.33 2.29
4170 5515 9.262358 GGGTGAATCTACACTCTAAAATATGTC 57.738 37.037 0.00 0.00 38.14 3.06
4192 5537 8.661352 TGTCTACATACATCCATATGTTGTTG 57.339 34.615 12.25 12.03 44.07 3.33
4193 5538 8.264347 TGTCTACATACATCCATATGTTGTTGT 58.736 33.333 12.25 15.47 44.07 3.32
4194 5539 8.765219 GTCTACATACATCCATATGTTGTTGTC 58.235 37.037 12.25 4.60 44.07 3.18
4195 5540 6.942532 ACATACATCCATATGTTGTTGTCC 57.057 37.500 12.25 0.00 44.07 4.02
4196 5541 6.422333 ACATACATCCATATGTTGTTGTCCA 58.578 36.000 12.25 0.00 44.07 4.02
4198 5543 7.560991 ACATACATCCATATGTTGTTGTCCATT 59.439 33.333 12.25 0.00 44.07 3.16
4204 5549 7.905265 TCCATATGTTGTTGTCCATTTGAAAT 58.095 30.769 1.24 0.00 0.00 2.17
4205 5550 7.818446 TCCATATGTTGTTGTCCATTTGAAATG 59.182 33.333 10.84 10.84 0.00 2.32
4211 5556 8.253810 TGTTGTTGTCCATTTGAAATGTCTAAA 58.746 29.630 15.93 3.49 0.00 1.85
4213 5558 9.658799 TTGTTGTCCATTTGAAATGTCTAAAAA 57.341 25.926 15.93 6.88 0.00 1.94
4215 5560 9.528018 GTTGTCCATTTGAAATGTCTAAAAAGA 57.472 29.630 15.93 1.84 0.00 2.52
4216 5561 9.528018 TTGTCCATTTGAAATGTCTAAAAAGAC 57.472 29.630 15.93 12.86 39.15 3.01
4217 5562 8.912988 TGTCCATTTGAAATGTCTAAAAAGACT 58.087 29.630 15.93 0.00 39.41 3.24
4237 5582 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4238 5583 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4239 5584 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4240 5585 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4241 5586 7.786464 ACTTATATTTAGGAACGGAGGGAGTAA 59.214 37.037 0.00 0.00 0.00 2.24
4242 5587 8.731591 TTATATTTAGGAACGGAGGGAGTAAT 57.268 34.615 0.00 0.00 0.00 1.89
4243 5588 9.827198 TTATATTTAGGAACGGAGGGAGTAATA 57.173 33.333 0.00 0.00 0.00 0.98
4256 5601 8.721478 CGGAGGGAGTAATAATGATACAATTTG 58.279 37.037 0.00 0.00 0.00 2.32
4317 5663 4.141937 GGCCCCAGTGAAATTAGAAAATCC 60.142 45.833 0.00 0.00 0.00 3.01
4324 5670 9.672673 CCAGTGAAATTAGAAAATCCTTCTCTA 57.327 33.333 0.00 0.00 0.00 2.43
4367 5713 4.341235 TCACTTATAGAAGATGACCCCACG 59.659 45.833 3.65 0.00 36.45 4.94
4368 5714 3.641906 ACTTATAGAAGATGACCCCACGG 59.358 47.826 3.65 0.00 36.45 4.94
4417 5772 0.462789 GGCTTCGTCCCGGAATCTAA 59.537 55.000 0.73 0.00 0.00 2.10
4419 5774 2.484947 GGCTTCGTCCCGGAATCTAATT 60.485 50.000 0.73 0.00 0.00 1.40
4431 5786 9.193806 TCCCGGAATCTAATTATATGTACTACC 57.806 37.037 0.73 0.00 0.00 3.18
4612 6182 4.343231 TGGACCATTCAACTATTGCATGT 58.657 39.130 0.00 0.00 33.31 3.21
4644 6230 1.640917 ACGGTACATGGTCACCTTCT 58.359 50.000 0.00 0.00 32.29 2.85
4668 6254 8.092687 TCTTCCTTTGGTTGAGTAAGTACATAC 58.907 37.037 0.00 0.00 0.00 2.39
4775 6361 1.283029 ACCACAAGGAGCAGCATATGT 59.717 47.619 4.29 0.00 38.69 2.29
4931 6517 2.300723 ACTACACGGCATCACAGGTTAA 59.699 45.455 0.00 0.00 0.00 2.01
4937 6523 2.802719 GGCATCACAGGTTAAAGGGAA 58.197 47.619 0.00 0.00 0.00 3.97
5002 6588 4.569943 TGGCTACAAGAACTGATGAACTC 58.430 43.478 0.00 0.00 0.00 3.01
5004 6590 4.867608 GGCTACAAGAACTGATGAACTCTC 59.132 45.833 0.00 0.00 0.00 3.20
5006 6592 5.804979 GCTACAAGAACTGATGAACTCTCTC 59.195 44.000 0.00 0.00 0.00 3.20
5008 6594 6.024552 ACAAGAACTGATGAACTCTCTCTC 57.975 41.667 0.00 0.00 0.00 3.20
5010 6596 6.071952 ACAAGAACTGATGAACTCTCTCTCTC 60.072 42.308 0.00 0.00 0.00 3.20
5012 6598 5.882557 AGAACTGATGAACTCTCTCTCTCTC 59.117 44.000 0.00 0.00 0.00 3.20
5014 6600 5.431765 ACTGATGAACTCTCTCTCTCTCTC 58.568 45.833 0.00 0.00 0.00 3.20
5016 6602 5.674525 TGATGAACTCTCTCTCTCTCTCTC 58.325 45.833 0.00 0.00 0.00 3.20
5018 6604 5.344743 TGAACTCTCTCTCTCTCTCTCTC 57.655 47.826 0.00 0.00 0.00 3.20
5020 6606 5.127845 TGAACTCTCTCTCTCTCTCTCTCTC 59.872 48.000 0.00 0.00 0.00 3.20
5022 6608 4.892934 ACTCTCTCTCTCTCTCTCTCTCTC 59.107 50.000 0.00 0.00 0.00 3.20
5401 6987 0.324614 TCAAGGAAGCGAAGGATGCA 59.675 50.000 0.00 0.00 33.85 3.96
5530 7116 6.345920 AGTCTTCACTGTTTAGTTTTCGTG 57.654 37.500 0.00 0.00 34.07 4.35
5623 7212 7.331026 TGGTTTAGCTGATATGAGGTATATGC 58.669 38.462 1.84 0.00 32.09 3.14
5650 7239 2.237143 TGGAGCCGACAAAAGAGATCAT 59.763 45.455 0.00 0.00 0.00 2.45
5675 7264 1.272769 GCAGAGAAGGTGAAGTACGGT 59.727 52.381 0.00 0.00 0.00 4.83
5714 7303 0.750911 CATGGCCTCTTGGAGAAGCC 60.751 60.000 3.32 10.03 37.46 4.35
5726 7315 2.092049 TGGAGAAGCCATAGAGGTCGTA 60.092 50.000 0.00 0.00 43.33 3.43
5729 7318 3.821600 GAGAAGCCATAGAGGTCGTATCA 59.178 47.826 0.00 0.00 40.61 2.15
5734 7323 3.449018 GCCATAGAGGTCGTATCATCCAT 59.551 47.826 0.00 0.00 40.61 3.41
5738 7327 7.036220 CCATAGAGGTCGTATCATCCATAAAC 58.964 42.308 0.00 0.00 0.00 2.01
5783 7372 9.653287 TTTAAATTGATATATAGTCCCTCGCAG 57.347 33.333 0.00 0.00 0.00 5.18
5788 7377 0.389391 TATAGTCCCTCGCAGCAAGC 59.611 55.000 0.00 0.00 40.87 4.01
5818 7407 6.071896 TGTGTAGCTATCCATAGATGTAGCAC 60.072 42.308 12.22 9.43 36.80 4.40
5851 7440 2.818130 TGCTTGCCATGTCCTTTTTC 57.182 45.000 0.00 0.00 0.00 2.29
5868 7457 2.746279 TTCCCTCAGAAGTGCCAAAA 57.254 45.000 0.00 0.00 0.00 2.44
5891 7480 7.645058 AAACACCCTATAGATTTGGATTGTG 57.355 36.000 0.00 0.00 0.00 3.33
5939 7528 5.862924 TTGTGTTTCTTGAGCTATAGCAC 57.137 39.130 26.07 20.24 45.16 4.40
5956 7548 2.634982 CACGGTATGCTTGCATGTTT 57.365 45.000 17.26 0.00 0.00 2.83
5957 7549 2.945278 CACGGTATGCTTGCATGTTTT 58.055 42.857 17.26 0.00 0.00 2.43
6059 7652 8.070171 GCAAGTTATACCTAATATGTGTGCAAG 58.930 37.037 0.00 0.00 0.00 4.01
6078 7671 7.148507 TGTGCAAGTTTTTCATCGTTTGATTTT 60.149 29.630 0.00 0.00 33.34 1.82
6080 7673 8.324567 TGCAAGTTTTTCATCGTTTGATTTTAC 58.675 29.630 0.00 0.00 33.34 2.01
6090 7683 9.058174 TCATCGTTTGATTTTACTGTTTTCCTA 57.942 29.630 0.00 0.00 30.49 2.94
6226 7823 9.260002 GCAGGAAAAGATTGTTTATTTTTCTCA 57.740 29.630 8.03 0.00 38.76 3.27
6258 7856 7.488150 GCTAATGTTTGTGGCTCCTTTTATTAC 59.512 37.037 0.00 0.00 0.00 1.89
6266 7864 6.547880 TGTGGCTCCTTTTATTACTGTTTTCA 59.452 34.615 0.00 0.00 0.00 2.69
6273 7871 9.757227 TCCTTTTATTACTGTTTTCATTGTTGG 57.243 29.630 0.00 0.00 0.00 3.77
6325 7925 5.590530 ATTTTTGTGTCCAGTGCAGTTTA 57.409 34.783 0.00 0.00 0.00 2.01
6340 7940 3.181487 GCAGTTTAATGATGCATTCGGGT 60.181 43.478 0.00 0.00 39.75 5.28
6354 7954 5.065859 TGCATTCGGGTGACACTATTTAATG 59.934 40.000 5.39 9.56 0.00 1.90
6487 8091 6.629128 TGTGTATCTTGCATGTTTAAATGGG 58.371 36.000 0.00 0.00 0.00 4.00
6627 8232 5.017294 ACATTTTAATTACCAATGGGCCG 57.983 39.130 3.55 0.00 37.90 6.13
6645 8250 1.476891 CCGTAGCAGAAGGTAGCTCAA 59.523 52.381 0.00 0.00 42.05 3.02
6646 8251 2.094182 CCGTAGCAGAAGGTAGCTCAAA 60.094 50.000 0.00 0.00 42.05 2.69
6647 8252 2.924290 CGTAGCAGAAGGTAGCTCAAAC 59.076 50.000 0.00 0.00 42.05 2.93
6653 8258 2.716969 AGAAGGTAGCTCAAACCCCTTT 59.283 45.455 0.26 0.00 37.77 3.11
6657 8262 2.289882 GGTAGCTCAAACCCCTTTACGT 60.290 50.000 0.00 0.00 0.00 3.57
6658 8263 1.892209 AGCTCAAACCCCTTTACGTG 58.108 50.000 0.00 0.00 0.00 4.49
6707 8312 5.744666 TTTAATTAGCAATGGACCGTAGC 57.255 39.130 0.00 0.00 0.00 3.58
6711 8316 0.833287 AGCAATGGACCGTAGCAGAT 59.167 50.000 4.91 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.517132 CGATGACTTGCGTTGCTTCG 60.517 55.000 0.00 0.00 0.00 3.79
1 2 0.790207 TCGATGACTTGCGTTGCTTC 59.210 50.000 0.00 0.00 0.00 3.86
2 3 0.792640 CTCGATGACTTGCGTTGCTT 59.207 50.000 0.00 0.00 0.00 3.91
13 14 5.232414 GGTTGCTTGTAATAGTCTCGATGAC 59.768 44.000 6.85 6.85 45.67 3.06
14 15 5.348986 GGTTGCTTGTAATAGTCTCGATGA 58.651 41.667 0.00 0.00 0.00 2.92
15 16 4.207224 CGGTTGCTTGTAATAGTCTCGATG 59.793 45.833 0.00 0.00 0.00 3.84
16 17 4.360563 CGGTTGCTTGTAATAGTCTCGAT 58.639 43.478 0.00 0.00 0.00 3.59
17 18 3.428452 CCGGTTGCTTGTAATAGTCTCGA 60.428 47.826 0.00 0.00 0.00 4.04
18 19 2.858344 CCGGTTGCTTGTAATAGTCTCG 59.142 50.000 0.00 0.00 0.00 4.04
19 20 3.195661 CCCGGTTGCTTGTAATAGTCTC 58.804 50.000 0.00 0.00 0.00 3.36
20 21 2.570302 ACCCGGTTGCTTGTAATAGTCT 59.430 45.455 0.00 0.00 0.00 3.24
21 22 2.934553 GACCCGGTTGCTTGTAATAGTC 59.065 50.000 0.00 0.00 0.00 2.59
22 23 2.570302 AGACCCGGTTGCTTGTAATAGT 59.430 45.455 0.00 0.00 0.00 2.12
23 24 2.936498 CAGACCCGGTTGCTTGTAATAG 59.064 50.000 0.00 0.00 0.00 1.73
24 25 2.937873 GCAGACCCGGTTGCTTGTAATA 60.938 50.000 13.69 0.00 37.35 0.98
25 26 1.821216 CAGACCCGGTTGCTTGTAAT 58.179 50.000 0.00 0.00 0.00 1.89
26 27 0.887387 GCAGACCCGGTTGCTTGTAA 60.887 55.000 13.69 0.00 37.35 2.41
27 28 1.302192 GCAGACCCGGTTGCTTGTA 60.302 57.895 13.69 0.00 37.35 2.41
28 29 2.594592 GCAGACCCGGTTGCTTGT 60.595 61.111 13.69 0.00 37.35 3.16
29 30 3.365265 GGCAGACCCGGTTGCTTG 61.365 66.667 18.51 4.10 40.15 4.01
30 31 3.850098 CTGGCAGACCCGGTTGCTT 62.850 63.158 9.42 0.00 40.15 3.91
31 32 4.335647 CTGGCAGACCCGGTTGCT 62.336 66.667 9.42 2.90 40.15 3.91
32 33 3.842925 TTCTGGCAGACCCGGTTGC 62.843 63.158 18.55 12.84 41.11 4.17
33 34 1.672356 CTTCTGGCAGACCCGGTTG 60.672 63.158 18.55 0.00 41.11 3.77
34 35 0.834687 TACTTCTGGCAGACCCGGTT 60.835 55.000 18.55 0.45 41.11 4.44
35 36 0.834687 TTACTTCTGGCAGACCCGGT 60.835 55.000 18.55 15.24 41.11 5.28
36 37 0.391263 GTTACTTCTGGCAGACCCGG 60.391 60.000 18.55 10.21 41.74 5.73
37 38 0.320374 TGTTACTTCTGGCAGACCCG 59.680 55.000 18.55 11.16 35.87 5.28
38 39 1.623811 TCTGTTACTTCTGGCAGACCC 59.376 52.381 18.55 4.02 33.62 4.46
41 42 2.300152 CTGGTCTGTTACTTCTGGCAGA 59.700 50.000 14.43 14.43 35.85 4.26
42 43 2.300152 TCTGGTCTGTTACTTCTGGCAG 59.700 50.000 8.58 8.58 0.00 4.85
43 44 2.325484 TCTGGTCTGTTACTTCTGGCA 58.675 47.619 0.00 0.00 0.00 4.92
44 45 3.402628 TTCTGGTCTGTTACTTCTGGC 57.597 47.619 0.00 0.00 0.00 4.85
45 46 5.123227 TGTTTTCTGGTCTGTTACTTCTGG 58.877 41.667 0.00 0.00 0.00 3.86
46 47 6.049149 TCTGTTTTCTGGTCTGTTACTTCTG 58.951 40.000 0.00 0.00 0.00 3.02
47 48 6.235231 TCTGTTTTCTGGTCTGTTACTTCT 57.765 37.500 0.00 0.00 0.00 2.85
48 49 6.509677 CGTTCTGTTTTCTGGTCTGTTACTTC 60.510 42.308 0.00 0.00 0.00 3.01
49 50 5.293569 CGTTCTGTTTTCTGGTCTGTTACTT 59.706 40.000 0.00 0.00 0.00 2.24
50 51 4.809426 CGTTCTGTTTTCTGGTCTGTTACT 59.191 41.667 0.00 0.00 0.00 2.24
51 52 4.807304 TCGTTCTGTTTTCTGGTCTGTTAC 59.193 41.667 0.00 0.00 0.00 2.50
52 53 5.013568 TCGTTCTGTTTTCTGGTCTGTTA 57.986 39.130 0.00 0.00 0.00 2.41
53 54 3.869065 TCGTTCTGTTTTCTGGTCTGTT 58.131 40.909 0.00 0.00 0.00 3.16
54 55 3.536956 TCGTTCTGTTTTCTGGTCTGT 57.463 42.857 0.00 0.00 0.00 3.41
55 56 4.310769 AGATCGTTCTGTTTTCTGGTCTG 58.689 43.478 0.00 0.00 0.00 3.51
56 57 4.608948 AGATCGTTCTGTTTTCTGGTCT 57.391 40.909 0.00 0.00 0.00 3.85
57 58 5.227908 TGTAGATCGTTCTGTTTTCTGGTC 58.772 41.667 6.25 0.00 33.17 4.02
58 59 5.209818 TGTAGATCGTTCTGTTTTCTGGT 57.790 39.130 6.25 0.00 33.17 4.00
59 60 5.292101 GGATGTAGATCGTTCTGTTTTCTGG 59.708 44.000 6.25 0.00 33.17 3.86
60 61 5.292101 GGGATGTAGATCGTTCTGTTTTCTG 59.708 44.000 6.25 0.00 33.17 3.02
61 62 5.187967 AGGGATGTAGATCGTTCTGTTTTCT 59.812 40.000 6.25 0.00 33.17 2.52
62 63 5.420409 AGGGATGTAGATCGTTCTGTTTTC 58.580 41.667 6.25 0.00 33.17 2.29
63 64 5.422214 AGGGATGTAGATCGTTCTGTTTT 57.578 39.130 6.25 0.00 33.17 2.43
64 65 5.892119 TCTAGGGATGTAGATCGTTCTGTTT 59.108 40.000 6.25 0.00 33.17 2.83
65 66 5.446860 TCTAGGGATGTAGATCGTTCTGTT 58.553 41.667 6.25 0.00 33.17 3.16
66 67 5.050126 TCTAGGGATGTAGATCGTTCTGT 57.950 43.478 6.25 0.00 33.17 3.41
67 68 6.039941 AGTTTCTAGGGATGTAGATCGTTCTG 59.960 42.308 6.25 0.00 33.17 3.02
68 69 6.130569 AGTTTCTAGGGATGTAGATCGTTCT 58.869 40.000 0.97 0.97 35.90 3.01
69 70 6.039493 TGAGTTTCTAGGGATGTAGATCGTTC 59.961 42.308 0.00 0.00 0.00 3.95
70 71 5.892119 TGAGTTTCTAGGGATGTAGATCGTT 59.108 40.000 0.00 0.00 0.00 3.85
71 72 5.446860 TGAGTTTCTAGGGATGTAGATCGT 58.553 41.667 0.00 0.00 0.00 3.73
72 73 6.015856 ACATGAGTTTCTAGGGATGTAGATCG 60.016 42.308 0.00 0.00 0.00 3.69
73 74 7.151308 CACATGAGTTTCTAGGGATGTAGATC 58.849 42.308 0.00 0.00 0.00 2.75
74 75 6.042552 CCACATGAGTTTCTAGGGATGTAGAT 59.957 42.308 0.00 0.00 0.00 1.98
75 76 5.363868 CCACATGAGTTTCTAGGGATGTAGA 59.636 44.000 0.00 0.00 0.00 2.59
76 77 5.453903 CCCACATGAGTTTCTAGGGATGTAG 60.454 48.000 0.00 0.00 36.96 2.74
77 78 4.408921 CCCACATGAGTTTCTAGGGATGTA 59.591 45.833 0.00 0.00 36.96 2.29
78 79 3.200825 CCCACATGAGTTTCTAGGGATGT 59.799 47.826 0.00 0.00 36.96 3.06
79 80 3.455910 TCCCACATGAGTTTCTAGGGATG 59.544 47.826 0.00 0.00 38.84 3.51
80 81 3.736094 TCCCACATGAGTTTCTAGGGAT 58.264 45.455 0.00 0.00 38.84 3.85
81 82 3.199442 TCCCACATGAGTTTCTAGGGA 57.801 47.619 0.00 0.00 41.33 4.20
82 83 5.832539 ATATCCCACATGAGTTTCTAGGG 57.167 43.478 0.00 0.00 36.15 3.53
83 84 6.595682 ACAATATCCCACATGAGTTTCTAGG 58.404 40.000 0.00 0.00 0.00 3.02
84 85 7.504403 AGACAATATCCCACATGAGTTTCTAG 58.496 38.462 0.00 0.00 0.00 2.43
85 86 7.437713 AGACAATATCCCACATGAGTTTCTA 57.562 36.000 0.00 0.00 0.00 2.10
86 87 6.319048 AGACAATATCCCACATGAGTTTCT 57.681 37.500 0.00 0.00 0.00 2.52
87 88 6.201044 CGTAGACAATATCCCACATGAGTTTC 59.799 42.308 0.00 0.00 0.00 2.78
88 89 6.049149 CGTAGACAATATCCCACATGAGTTT 58.951 40.000 0.00 0.00 0.00 2.66
89 90 5.601662 CGTAGACAATATCCCACATGAGTT 58.398 41.667 0.00 0.00 0.00 3.01
90 91 4.501571 GCGTAGACAATATCCCACATGAGT 60.502 45.833 0.00 0.00 0.00 3.41
98 99 5.006746 CACAAGAAAGCGTAGACAATATCCC 59.993 44.000 0.00 0.00 0.00 3.85
100 101 6.648725 ACACAAGAAAGCGTAGACAATATC 57.351 37.500 0.00 0.00 0.00 1.63
101 102 6.426937 ACAACACAAGAAAGCGTAGACAATAT 59.573 34.615 0.00 0.00 0.00 1.28
103 104 4.574828 ACAACACAAGAAAGCGTAGACAAT 59.425 37.500 0.00 0.00 0.00 2.71
120 121 2.440501 CAAACACGAGCAGAACAACAC 58.559 47.619 0.00 0.00 0.00 3.32
247 249 2.651703 CGCGAGCTATTTTGTGTTGTTG 59.348 45.455 0.00 0.00 0.00 3.33
269 271 0.306228 TCCATTGTTGTGTGTTCGCG 59.694 50.000 0.00 0.00 0.00 5.87
324 326 6.668645 ACATCTATGAGACTAGGAACAGACT 58.331 40.000 0.00 0.00 0.00 3.24
363 375 7.222805 GTCATCATACGAATGACGCCATTATAT 59.777 37.037 0.00 0.00 44.79 0.86
364 376 6.530181 GTCATCATACGAATGACGCCATTATA 59.470 38.462 0.00 0.00 44.79 0.98
425 445 6.147000 GCAATATTTTCTTTCTCCCGCAAAAA 59.853 34.615 0.00 0.00 0.00 1.94
426 446 5.637387 GCAATATTTTCTTTCTCCCGCAAAA 59.363 36.000 0.00 0.00 0.00 2.44
427 447 5.167845 GCAATATTTTCTTTCTCCCGCAAA 58.832 37.500 0.00 0.00 0.00 3.68
428 448 4.674101 CGCAATATTTTCTTTCTCCCGCAA 60.674 41.667 0.00 0.00 0.00 4.85
429 449 3.181501 CGCAATATTTTCTTTCTCCCGCA 60.182 43.478 0.00 0.00 0.00 5.69
430 450 3.363178 CGCAATATTTTCTTTCTCCCGC 58.637 45.455 0.00 0.00 0.00 6.13
431 451 3.065371 AGCGCAATATTTTCTTTCTCCCG 59.935 43.478 11.47 0.00 0.00 5.14
432 452 4.602006 GAGCGCAATATTTTCTTTCTCCC 58.398 43.478 11.47 0.00 0.00 4.30
433 453 4.274865 CGAGCGCAATATTTTCTTTCTCC 58.725 43.478 11.47 0.00 0.00 3.71
434 454 4.201822 ACCGAGCGCAATATTTTCTTTCTC 60.202 41.667 11.47 0.00 0.00 2.87
435 455 3.689649 ACCGAGCGCAATATTTTCTTTCT 59.310 39.130 11.47 0.00 0.00 2.52
436 456 4.016113 ACCGAGCGCAATATTTTCTTTC 57.984 40.909 11.47 0.00 0.00 2.62
437 457 3.181500 GGACCGAGCGCAATATTTTCTTT 60.181 43.478 11.47 0.00 0.00 2.52
438 458 2.354821 GGACCGAGCGCAATATTTTCTT 59.645 45.455 11.47 0.00 0.00 2.52
439 459 1.940613 GGACCGAGCGCAATATTTTCT 59.059 47.619 11.47 0.00 0.00 2.52
440 460 1.002792 GGGACCGAGCGCAATATTTTC 60.003 52.381 11.47 0.00 0.00 2.29
441 461 1.021968 GGGACCGAGCGCAATATTTT 58.978 50.000 11.47 0.00 0.00 1.82
457 477 3.085533 CTCTTTCTCTCTCTCGTTGGGA 58.914 50.000 0.00 0.00 0.00 4.37
458 478 3.085533 TCTCTTTCTCTCTCTCGTTGGG 58.914 50.000 0.00 0.00 0.00 4.12
460 480 3.727673 CGCTCTCTTTCTCTCTCTCGTTG 60.728 52.174 0.00 0.00 0.00 4.10
461 481 2.418628 CGCTCTCTTTCTCTCTCTCGTT 59.581 50.000 0.00 0.00 0.00 3.85
463 483 2.030457 GTCGCTCTCTTTCTCTCTCTCG 59.970 54.545 0.00 0.00 0.00 4.04
464 484 2.030457 CGTCGCTCTCTTTCTCTCTCTC 59.970 54.545 0.00 0.00 0.00 3.20
466 486 2.004017 TCGTCGCTCTCTTTCTCTCTC 58.996 52.381 0.00 0.00 0.00 3.20
467 487 2.006888 CTCGTCGCTCTCTTTCTCTCT 58.993 52.381 0.00 0.00 0.00 3.10
468 488 1.063469 CCTCGTCGCTCTCTTTCTCTC 59.937 57.143 0.00 0.00 0.00 3.20
469 489 1.091537 CCTCGTCGCTCTCTTTCTCT 58.908 55.000 0.00 0.00 0.00 3.10
470 490 0.099791 CCCTCGTCGCTCTCTTTCTC 59.900 60.000 0.00 0.00 0.00 2.87
472 492 1.517475 GCCCTCGTCGCTCTCTTTC 60.517 63.158 0.00 0.00 0.00 2.62
473 493 2.574399 GCCCTCGTCGCTCTCTTT 59.426 61.111 0.00 0.00 0.00 2.52
474 494 3.816524 CGCCCTCGTCGCTCTCTT 61.817 66.667 0.00 0.00 0.00 2.85
546 573 6.322456 GGACCCTTTAGGAACTACGTACTTAT 59.678 42.308 0.00 0.00 42.67 1.73
549 576 4.019858 GGACCCTTTAGGAACTACGTACT 58.980 47.826 0.00 0.00 42.67 2.73
551 578 3.011708 AGGGACCCTTTAGGAACTACGTA 59.988 47.826 7.44 0.00 42.67 3.57
552 579 2.182827 GGGACCCTTTAGGAACTACGT 58.817 52.381 2.09 0.00 42.67 3.57
553 580 2.429971 GAGGGACCCTTTAGGAACTACG 59.570 54.545 16.22 0.00 35.20 3.51
556 795 2.835389 GAGAGGGACCCTTTAGGAACT 58.165 52.381 16.22 4.74 39.89 3.01
559 798 0.686769 GCGAGAGGGACCCTTTAGGA 60.687 60.000 16.22 0.00 39.89 2.94
562 801 1.567649 TCTAGCGAGAGGGACCCTTTA 59.432 52.381 16.22 2.35 31.76 1.85
653 892 7.978982 AGTTTGCTAGTTGCTAATCAAGTATG 58.021 34.615 0.00 0.00 39.23 2.39
668 907 7.225931 TCTGACGAAATTACAAAGTTTGCTAGT 59.774 33.333 15.59 6.38 0.00 2.57
669 908 7.572759 TCTGACGAAATTACAAAGTTTGCTAG 58.427 34.615 15.59 3.44 0.00 3.42
670 909 7.485418 TCTGACGAAATTACAAAGTTTGCTA 57.515 32.000 15.59 4.21 0.00 3.49
671 910 6.371809 TCTGACGAAATTACAAAGTTTGCT 57.628 33.333 15.59 5.82 0.00 3.91
680 919 8.833231 AGAAGAAAAGATCTGACGAAATTACA 57.167 30.769 0.00 0.00 38.79 2.41
689 944 7.308288 GGACTCCAAAAGAAGAAAAGATCTGAC 60.308 40.741 0.00 0.00 38.79 3.51
717 972 1.069204 CAGACCTATATGTGGCTGCGT 59.931 52.381 0.00 0.00 0.00 5.24
740 995 0.334676 TGGATGGGGTTGTTGGATCC 59.665 55.000 4.20 4.20 34.31 3.36
800 1055 5.910614 TCTGCAGTACTCTACGTGATAGTA 58.089 41.667 14.67 0.01 32.13 1.82
824 1081 3.154109 TGGGCTACCTTCGTATGGAACA 61.154 50.000 0.00 0.00 39.97 3.18
844 1101 2.662791 CGCAACTCAACAGTCCGAAATG 60.663 50.000 0.00 0.00 29.93 2.32
866 1123 4.208686 GCGACCGAGGCCCTACTG 62.209 72.222 0.00 0.00 0.00 2.74
878 1135 1.303091 ATTTAGTTGGCCGTGCGACC 61.303 55.000 0.00 0.00 0.00 4.79
893 1150 1.073763 CATGAGCATCCCCGGGATTTA 59.926 52.381 26.32 4.37 39.79 1.40
906 1163 2.436417 GCCAGGACTTTTACATGAGCA 58.564 47.619 0.00 0.00 0.00 4.26
912 1169 0.111639 GTGGGGCCAGGACTTTTACA 59.888 55.000 4.39 0.00 0.00 2.41
914 1171 1.771646 GGTGGGGCCAGGACTTTTA 59.228 57.895 4.39 0.00 37.17 1.52
930 1187 2.225041 GCTTTTAAAGGGGTGAGAGGGT 60.225 50.000 6.84 0.00 0.00 4.34
942 1203 4.201822 GCTCGAGTGGGTATGCTTTTAAAG 60.202 45.833 15.13 0.00 0.00 1.85
945 1206 2.235155 TGCTCGAGTGGGTATGCTTTTA 59.765 45.455 15.13 0.00 0.00 1.52
949 1210 0.833287 ATTGCTCGAGTGGGTATGCT 59.167 50.000 15.13 0.00 0.00 3.79
950 1211 1.331756 CAATTGCTCGAGTGGGTATGC 59.668 52.381 15.13 0.00 0.00 3.14
953 1214 0.323302 TGCAATTGCTCGAGTGGGTA 59.677 50.000 29.37 3.82 42.66 3.69
954 1215 0.957395 CTGCAATTGCTCGAGTGGGT 60.957 55.000 29.37 0.00 42.66 4.51
955 1216 0.957395 ACTGCAATTGCTCGAGTGGG 60.957 55.000 29.37 12.11 42.66 4.61
959 1220 1.649664 AGCTACTGCAATTGCTCGAG 58.350 50.000 29.37 20.88 42.74 4.04
1021 1282 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
1022 1283 1.087725 AGGAGGAGGAGGAGGAGGA 59.912 63.158 0.00 0.00 0.00 3.71
1023 1284 1.232792 CAGGAGGAGGAGGAGGAGG 59.767 68.421 0.00 0.00 0.00 4.30
1024 1285 1.232792 CCAGGAGGAGGAGGAGGAG 59.767 68.421 0.00 0.00 36.89 3.69
1025 1286 1.547755 ACCAGGAGGAGGAGGAGGA 60.548 63.158 0.00 0.00 38.69 3.71
1026 1287 1.075600 GACCAGGAGGAGGAGGAGG 60.076 68.421 0.00 0.00 38.69 4.30
1027 1288 0.106217 GAGACCAGGAGGAGGAGGAG 60.106 65.000 0.00 0.00 38.69 3.69
1042 1303 4.500116 GCTGGCGGACGAGGAGAC 62.500 72.222 0.00 0.00 0.00 3.36
1066 1327 2.258591 GAGCACTGAGTCGGCGAA 59.741 61.111 12.92 0.00 0.00 4.70
1075 1336 2.636412 CCTTCCGTCCGAGCACTGA 61.636 63.158 0.00 0.00 0.00 3.41
1077 1338 4.070552 GCCTTCCGTCCGAGCACT 62.071 66.667 0.00 0.00 0.00 4.40
1128 1389 2.508663 GCGTACTTCCCTGGCGTC 60.509 66.667 0.00 0.00 0.00 5.19
1129 1390 4.078516 GGCGTACTTCCCTGGCGT 62.079 66.667 0.00 0.00 0.00 5.68
1131 1392 4.078516 ACGGCGTACTTCCCTGGC 62.079 66.667 12.58 0.00 0.00 4.85
1146 1407 1.920574 CTACCAGCGTCAAAGATCACG 59.079 52.381 0.00 0.00 39.09 4.35
1155 1416 4.063967 CCCGTGCTACCAGCGTCA 62.064 66.667 0.00 0.00 46.26 4.35
1176 1437 1.512926 ACTGAAAGACATGGACACGC 58.487 50.000 0.00 0.00 37.43 5.34
1191 1452 4.103153 AGGTCCATCTTCTTGTCAAACTGA 59.897 41.667 0.00 0.00 0.00 3.41
1240 1501 7.761704 GTGTGTCATATATACCTTGGCATAGAG 59.238 40.741 0.00 0.00 0.00 2.43
1295 1556 3.057456 GGTGATCGAACCGATACAGCTAT 60.057 47.826 16.05 0.00 47.00 2.97
1297 1558 1.067212 GGTGATCGAACCGATACAGCT 59.933 52.381 16.05 0.00 47.00 4.24
1387 1653 6.061022 TGAAGGGCACTCAATAAACTATGA 57.939 37.500 0.00 0.00 0.00 2.15
1454 1720 7.231467 ACTATTATAAGGAATGCGGTCCAAAT 58.769 34.615 8.11 3.75 40.48 2.32
1488 1754 2.588027 TCTTCGCGCCACATGTAATA 57.412 45.000 0.00 0.00 0.00 0.98
1529 1795 3.179443 TCATCTTGCCATTCTACGGAC 57.821 47.619 0.00 0.00 0.00 4.79
1586 1852 8.421784 AGTCTCGGTATCTTGCTTTCATAATTA 58.578 33.333 0.00 0.00 0.00 1.40
1601 1867 4.492085 GCGCAAACTTAAAGTCTCGGTATC 60.492 45.833 0.30 0.00 0.00 2.24
1606 1872 2.033236 TGTGCGCAAACTTAAAGTCTCG 60.033 45.455 14.00 0.00 0.00 4.04
1607 1873 3.602390 TGTGCGCAAACTTAAAGTCTC 57.398 42.857 14.00 0.00 0.00 3.36
1759 2025 1.129251 CTGCACGCACCAACAGATTAG 59.871 52.381 0.00 0.00 31.67 1.73
2050 2340 1.538047 TTTGCTCTGCCTTGTCATCC 58.462 50.000 0.00 0.00 0.00 3.51
2108 2398 6.992123 CAGGCCATTCTTATGATACTTGTGTA 59.008 38.462 5.01 0.00 33.37 2.90
2131 2421 0.533531 TGTCTTGAGTGGCACTGCAG 60.534 55.000 27.45 19.44 0.00 4.41
2230 2520 4.734398 AGAATTTTGGTGTGAAGTTGCA 57.266 36.364 0.00 0.00 0.00 4.08
2424 2715 3.489398 GCCTCTCACAGTGGTTAGTATCG 60.489 52.174 0.00 0.00 31.72 2.92
2438 2729 0.322008 CTCAACCCAAGGCCTCTCAC 60.322 60.000 5.23 0.00 0.00 3.51
2513 2814 9.471702 AGTCAGATTTTCAATCTTAACATCCAT 57.528 29.630 0.00 0.00 0.00 3.41
2669 2970 3.732219 CAGCAACAACAACAATAGCAGTG 59.268 43.478 0.00 0.00 0.00 3.66
2677 2978 4.196193 ACTAGTAGCAGCAACAACAACAA 58.804 39.130 0.00 0.00 0.00 2.83
2706 3007 0.394216 ACAGCAGCAACACCAACAGA 60.394 50.000 0.00 0.00 0.00 3.41
2707 3008 0.457035 AACAGCAGCAACACCAACAG 59.543 50.000 0.00 0.00 0.00 3.16
2709 3010 0.528249 CCAACAGCAGCAACACCAAC 60.528 55.000 0.00 0.00 0.00 3.77
2711 3012 1.379710 ACCAACAGCAGCAACACCA 60.380 52.632 0.00 0.00 0.00 4.17
2712 3013 1.066257 CACCAACAGCAGCAACACC 59.934 57.895 0.00 0.00 0.00 4.16
2713 3014 0.173255 AACACCAACAGCAGCAACAC 59.827 50.000 0.00 0.00 0.00 3.32
2851 3173 9.439500 AACAAATAATTTAGAGCAACCTACGTA 57.561 29.630 0.00 0.00 0.00 3.57
2987 3320 2.496470 GTTCCTTCCCGTCAGACACTAT 59.504 50.000 0.41 0.00 0.00 2.12
3010 3343 6.525578 TTGAGATACTCTTTGGTGACGTAT 57.474 37.500 0.00 0.00 0.00 3.06
3041 3374 6.947464 ACCTGTAAGCATAGACATTGTAGTT 58.053 36.000 0.00 0.00 0.00 2.24
3098 3440 9.899661 ATTGCAGTAATTAAGACCAATGTAGTA 57.100 29.630 0.00 0.00 0.00 1.82
3099 3441 8.807948 ATTGCAGTAATTAAGACCAATGTAGT 57.192 30.769 0.00 0.00 0.00 2.73
3100 3442 9.722056 GAATTGCAGTAATTAAGACCAATGTAG 57.278 33.333 0.00 0.00 39.06 2.74
3106 3448 8.856153 TTGTAGAATTGCAGTAATTAAGACCA 57.144 30.769 0.00 0.00 39.06 4.02
3175 3517 9.975218 ACCAATTAAGATCCATGTAAGTAAACT 57.025 29.630 0.00 0.00 0.00 2.66
3199 3541 2.264813 CAAGCATTGTAGCATTGCACC 58.735 47.619 11.91 0.92 42.34 5.01
3214 3556 4.520874 TCAAAATTTACCACCGATCAAGCA 59.479 37.500 0.00 0.00 0.00 3.91
3269 3672 8.519799 TCCTAGAATCATGTCCAAAATTAACC 57.480 34.615 0.00 0.00 0.00 2.85
3286 3689 4.523173 TCGGCGATTCTGTTATCCTAGAAT 59.477 41.667 4.99 0.00 44.10 2.40
3307 3710 9.836076 TTACATGATATATTTCTAACCGAGTCG 57.164 33.333 5.29 5.29 0.00 4.18
3427 4191 5.932883 AGTTCTGAGTCCGAATTTCTTTACC 59.067 40.000 0.00 0.00 0.00 2.85
3471 4235 5.305902 TCTTCACATACCACTTGTTCCACTA 59.694 40.000 0.00 0.00 0.00 2.74
3506 4270 8.810652 TTAGGTATGAACAAATGAACTTTTGC 57.189 30.769 11.29 0.00 39.65 3.68
3507 4271 8.915654 GCTTAGGTATGAACAAATGAACTTTTG 58.084 33.333 10.24 10.24 41.37 2.44
3523 4287 5.470437 TGTATGACTCGAGAGCTTAGGTATG 59.530 44.000 21.68 0.00 0.00 2.39
3540 4304 6.994496 TGAATTGAGGATCCATCTTGTATGAC 59.006 38.462 15.82 0.00 0.00 3.06
3560 4324 5.186409 AGCACAGCATGGTTCTATTTGAATT 59.814 36.000 0.00 0.00 43.62 2.17
3607 4945 6.771188 ATAATTTAGATCTTCCGACAAGCG 57.229 37.500 0.00 0.00 40.47 4.68
3655 4993 3.130693 GTGAGACTTAGTATTGCGGACCT 59.869 47.826 0.00 0.00 0.00 3.85
3657 4995 4.106029 TGTGAGACTTAGTATTGCGGAC 57.894 45.455 0.00 0.00 0.00 4.79
3701 5039 1.135228 GTGTGAAACCACCACAACACC 60.135 52.381 0.00 0.00 44.91 4.16
3718 5056 2.606961 CGATGCCTTGCACGTGTGT 61.607 57.895 18.38 0.00 43.04 3.72
3722 5060 2.434884 CCTCGATGCCTTGCACGT 60.435 61.111 0.00 0.00 43.04 4.49
3878 5218 2.487762 CGCTCCATTCTGTTTTGGCTTA 59.512 45.455 0.00 0.00 32.80 3.09
3888 5228 2.014335 TCACATCACGCTCCATTCTG 57.986 50.000 0.00 0.00 0.00 3.02
3896 5236 2.009774 GTATGGCTTTCACATCACGCT 58.990 47.619 0.00 0.00 0.00 5.07
3897 5237 2.009774 AGTATGGCTTTCACATCACGC 58.990 47.619 0.00 0.00 0.00 5.34
3899 5239 4.764172 AGAGAGTATGGCTTTCACATCAC 58.236 43.478 0.00 0.00 31.32 3.06
3900 5240 5.426689 AAGAGAGTATGGCTTTCACATCA 57.573 39.130 0.00 0.00 31.32 3.07
3901 5241 6.749923 AAAAGAGAGTATGGCTTTCACATC 57.250 37.500 0.00 0.00 31.91 3.06
3925 5265 7.498570 CACATTGATCCCAAAAAGGAAAAGAAA 59.501 33.333 0.00 0.00 40.04 2.52
3926 5266 6.991531 CACATTGATCCCAAAAAGGAAAAGAA 59.008 34.615 0.00 0.00 40.04 2.52
3927 5267 6.326064 TCACATTGATCCCAAAAAGGAAAAGA 59.674 34.615 0.00 0.00 40.04 2.52
3928 5268 6.523840 TCACATTGATCCCAAAAAGGAAAAG 58.476 36.000 0.00 0.00 40.04 2.27
3929 5269 6.491714 TCACATTGATCCCAAAAAGGAAAA 57.508 33.333 0.00 0.00 40.04 2.29
3931 5271 6.491714 TTTCACATTGATCCCAAAAAGGAA 57.508 33.333 0.00 0.00 40.04 3.36
3932 5272 5.511202 GCTTTCACATTGATCCCAAAAAGGA 60.511 40.000 0.00 0.00 41.22 3.36
3933 5273 4.692155 GCTTTCACATTGATCCCAAAAAGG 59.308 41.667 0.00 0.00 35.67 3.11
3934 5274 4.692155 GGCTTTCACATTGATCCCAAAAAG 59.308 41.667 0.00 0.00 35.67 2.27
3935 5275 4.504689 GGGCTTTCACATTGATCCCAAAAA 60.505 41.667 0.00 0.00 35.67 1.94
3936 5276 3.007831 GGGCTTTCACATTGATCCCAAAA 59.992 43.478 0.00 0.00 35.67 2.44
3937 5277 2.566724 GGGCTTTCACATTGATCCCAAA 59.433 45.455 0.00 0.00 35.67 3.28
3938 5278 2.178580 GGGCTTTCACATTGATCCCAA 58.821 47.619 0.00 0.00 33.64 4.12
3940 5280 2.149973 AGGGCTTTCACATTGATCCC 57.850 50.000 0.00 0.00 33.63 3.85
3941 5281 3.879892 GAGTAGGGCTTTCACATTGATCC 59.120 47.826 0.00 0.00 0.00 3.36
3958 5298 3.119459 ACTTATCACCACGCACAGAGTAG 60.119 47.826 0.00 0.00 0.00 2.57
3975 5315 5.130975 TGGATGCTCCATCTTACACACTTAT 59.869 40.000 5.32 0.00 42.67 1.73
3990 5331 0.734889 CCGTGACATTTGGATGCTCC 59.265 55.000 0.00 0.00 36.72 4.70
4009 5350 0.957888 GGGAGCTCCTTGCAAGACAC 60.958 60.000 31.36 15.19 45.94 3.67
4070 5415 7.465900 TTTTGGAATGGAGGGAGTAGATAAT 57.534 36.000 0.00 0.00 0.00 1.28
4078 5423 7.465116 AGACATATATTTTGGAATGGAGGGAG 58.535 38.462 0.00 0.00 0.00 4.30
4079 5424 7.406620 AGACATATATTTTGGAATGGAGGGA 57.593 36.000 0.00 0.00 0.00 4.20
4080 5425 8.482852 AAAGACATATATTTTGGAATGGAGGG 57.517 34.615 0.00 0.00 0.00 4.30
4081 5426 9.359653 AGAAAGACATATATTTTGGAATGGAGG 57.640 33.333 0.00 0.00 0.00 4.30
4098 5443 9.868277 CACTTGTTAGAATCTCTAGAAAGACAT 57.132 33.333 0.00 0.00 32.30 3.06
4099 5444 9.078990 TCACTTGTTAGAATCTCTAGAAAGACA 57.921 33.333 0.00 0.21 32.30 3.41
4100 5445 9.349145 GTCACTTGTTAGAATCTCTAGAAAGAC 57.651 37.037 0.00 0.00 32.30 3.01
4101 5446 9.303116 AGTCACTTGTTAGAATCTCTAGAAAGA 57.697 33.333 0.00 0.00 32.30 2.52
4104 5449 9.516546 TGTAGTCACTTGTTAGAATCTCTAGAA 57.483 33.333 0.00 0.00 29.56 2.10
4105 5450 9.688091 ATGTAGTCACTTGTTAGAATCTCTAGA 57.312 33.333 0.00 0.00 29.56 2.43
4112 5457 9.319143 GCTTCATATGTAGTCACTTGTTAGAAT 57.681 33.333 10.61 0.00 0.00 2.40
4113 5458 8.311109 TGCTTCATATGTAGTCACTTGTTAGAA 58.689 33.333 10.61 0.00 0.00 2.10
4114 5459 7.836842 TGCTTCATATGTAGTCACTTGTTAGA 58.163 34.615 10.61 0.00 0.00 2.10
4115 5460 8.479313 TTGCTTCATATGTAGTCACTTGTTAG 57.521 34.615 10.61 0.00 0.00 2.34
4116 5461 8.717821 GTTTGCTTCATATGTAGTCACTTGTTA 58.282 33.333 10.61 0.00 0.00 2.41
4117 5462 7.445402 AGTTTGCTTCATATGTAGTCACTTGTT 59.555 33.333 10.61 0.00 0.00 2.83
4118 5463 6.936900 AGTTTGCTTCATATGTAGTCACTTGT 59.063 34.615 10.61 0.00 0.00 3.16
4119 5464 7.239271 CAGTTTGCTTCATATGTAGTCACTTG 58.761 38.462 10.61 2.37 0.00 3.16
4120 5465 6.372659 CCAGTTTGCTTCATATGTAGTCACTT 59.627 38.462 10.61 0.00 0.00 3.16
4121 5466 5.877012 CCAGTTTGCTTCATATGTAGTCACT 59.123 40.000 10.61 7.51 0.00 3.41
4122 5467 5.065218 CCCAGTTTGCTTCATATGTAGTCAC 59.935 44.000 10.61 5.69 0.00 3.67
4123 5468 5.185454 CCCAGTTTGCTTCATATGTAGTCA 58.815 41.667 10.61 6.75 0.00 3.41
4124 5469 5.065218 CACCCAGTTTGCTTCATATGTAGTC 59.935 44.000 10.61 4.54 0.00 2.59
4125 5470 4.943705 CACCCAGTTTGCTTCATATGTAGT 59.056 41.667 10.61 0.00 0.00 2.73
4126 5471 5.185454 TCACCCAGTTTGCTTCATATGTAG 58.815 41.667 5.04 5.04 0.00 2.74
4127 5472 5.172687 TCACCCAGTTTGCTTCATATGTA 57.827 39.130 1.90 0.00 0.00 2.29
4128 5473 4.032960 TCACCCAGTTTGCTTCATATGT 57.967 40.909 1.90 0.00 0.00 2.29
4129 5474 5.359009 AGATTCACCCAGTTTGCTTCATATG 59.641 40.000 0.00 0.00 0.00 1.78
4130 5475 5.513233 AGATTCACCCAGTTTGCTTCATAT 58.487 37.500 0.00 0.00 0.00 1.78
4131 5476 4.922206 AGATTCACCCAGTTTGCTTCATA 58.078 39.130 0.00 0.00 0.00 2.15
4132 5477 3.771216 AGATTCACCCAGTTTGCTTCAT 58.229 40.909 0.00 0.00 0.00 2.57
4133 5478 3.228188 AGATTCACCCAGTTTGCTTCA 57.772 42.857 0.00 0.00 0.00 3.02
4134 5479 4.072131 TGTAGATTCACCCAGTTTGCTTC 58.928 43.478 0.00 0.00 0.00 3.86
4135 5480 3.821033 GTGTAGATTCACCCAGTTTGCTT 59.179 43.478 0.00 0.00 32.81 3.91
4136 5481 3.073062 AGTGTAGATTCACCCAGTTTGCT 59.927 43.478 0.00 0.00 38.91 3.91
4137 5482 3.412386 AGTGTAGATTCACCCAGTTTGC 58.588 45.455 0.00 0.00 38.91 3.68
4138 5483 4.899502 AGAGTGTAGATTCACCCAGTTTG 58.100 43.478 0.00 0.00 38.91 2.93
4139 5484 6.681729 TTAGAGTGTAGATTCACCCAGTTT 57.318 37.500 0.00 0.00 38.91 2.66
4140 5485 6.681729 TTTAGAGTGTAGATTCACCCAGTT 57.318 37.500 0.00 0.00 38.91 3.16
4141 5486 6.681729 TTTTAGAGTGTAGATTCACCCAGT 57.318 37.500 0.00 0.00 38.91 4.00
4142 5487 9.265901 CATATTTTAGAGTGTAGATTCACCCAG 57.734 37.037 0.00 0.00 38.91 4.45
4143 5488 8.768397 ACATATTTTAGAGTGTAGATTCACCCA 58.232 33.333 0.00 0.00 38.91 4.51
4144 5489 9.262358 GACATATTTTAGAGTGTAGATTCACCC 57.738 37.037 0.00 0.00 38.91 4.61
4166 5511 9.276590 CAACAACATATGGATGTATGTAGACAT 57.723 33.333 14.48 0.08 45.93 3.06
4167 5512 8.264347 ACAACAACATATGGATGTATGTAGACA 58.736 33.333 14.48 0.00 45.93 3.41
4168 5513 8.662781 ACAACAACATATGGATGTATGTAGAC 57.337 34.615 14.48 0.00 45.93 2.59
4169 5514 7.931407 GGACAACAACATATGGATGTATGTAGA 59.069 37.037 14.48 0.00 45.93 2.59
4170 5515 7.714813 TGGACAACAACATATGGATGTATGTAG 59.285 37.037 14.48 7.36 45.93 2.74
4171 5516 7.569240 TGGACAACAACATATGGATGTATGTA 58.431 34.615 14.48 6.99 45.93 2.29
4172 5517 6.422333 TGGACAACAACATATGGATGTATGT 58.578 36.000 14.48 17.38 45.93 2.29
4173 5518 6.940831 TGGACAACAACATATGGATGTATG 57.059 37.500 14.48 15.28 45.93 2.39
4174 5519 8.415553 CAAATGGACAACAACATATGGATGTAT 58.584 33.333 14.48 8.04 45.93 2.29
4175 5520 7.613411 TCAAATGGACAACAACATATGGATGTA 59.387 33.333 14.48 2.51 45.93 2.29
4177 5522 6.865411 TCAAATGGACAACAACATATGGATG 58.135 36.000 7.80 8.32 39.16 3.51
4178 5523 7.479352 TTCAAATGGACAACAACATATGGAT 57.521 32.000 7.80 0.00 0.00 3.41
4179 5524 6.907853 TTCAAATGGACAACAACATATGGA 57.092 33.333 7.80 0.00 0.00 3.41
4180 5525 7.603404 ACATTTCAAATGGACAACAACATATGG 59.397 33.333 14.70 0.00 0.00 2.74
4181 5526 8.537049 ACATTTCAAATGGACAACAACATATG 57.463 30.769 14.70 0.00 0.00 1.78
4182 5527 8.587608 AGACATTTCAAATGGACAACAACATAT 58.412 29.630 14.70 0.00 0.00 1.78
4183 5528 7.950512 AGACATTTCAAATGGACAACAACATA 58.049 30.769 14.70 0.00 0.00 2.29
4184 5529 6.819284 AGACATTTCAAATGGACAACAACAT 58.181 32.000 14.70 0.00 0.00 2.71
4185 5530 6.219417 AGACATTTCAAATGGACAACAACA 57.781 33.333 14.70 0.00 0.00 3.33
4186 5531 8.641499 TTTAGACATTTCAAATGGACAACAAC 57.359 30.769 14.70 0.00 0.00 3.32
4187 5532 9.658799 TTTTTAGACATTTCAAATGGACAACAA 57.341 25.926 14.70 2.19 0.00 2.83
4188 5533 9.311916 CTTTTTAGACATTTCAAATGGACAACA 57.688 29.630 14.70 0.00 0.00 3.33
4189 5534 9.528018 TCTTTTTAGACATTTCAAATGGACAAC 57.472 29.630 14.70 1.26 0.00 3.32
4190 5535 9.528018 GTCTTTTTAGACATTTCAAATGGACAA 57.472 29.630 14.70 2.31 38.59 3.18
4191 5536 8.912988 AGTCTTTTTAGACATTTCAAATGGACA 58.087 29.630 14.70 0.00 41.02 4.02
4192 5537 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
4211 5556 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4213 5558 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4215 5560 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4216 5561 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4217 5562 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
4222 5567 6.612456 TCATTATTACTCCCTCCGTTCCTAAA 59.388 38.462 0.00 0.00 0.00 1.85
4225 5570 4.553678 TCATTATTACTCCCTCCGTTCCT 58.446 43.478 0.00 0.00 0.00 3.36
4228 5573 6.989155 TGTATCATTATTACTCCCTCCGTT 57.011 37.500 0.00 0.00 0.00 4.44
4230 5575 8.721478 CAAATTGTATCATTATTACTCCCTCCG 58.279 37.037 0.00 0.00 0.00 4.63
4231 5576 8.515414 GCAAATTGTATCATTATTACTCCCTCC 58.485 37.037 0.00 0.00 0.00 4.30
4237 5582 9.071276 CCCTGAGCAAATTGTATCATTATTACT 57.929 33.333 4.07 0.00 0.00 2.24
4238 5583 9.066892 TCCCTGAGCAAATTGTATCATTATTAC 57.933 33.333 4.07 0.00 0.00 1.89
4239 5584 9.066892 GTCCCTGAGCAAATTGTATCATTATTA 57.933 33.333 4.07 0.00 0.00 0.98
4240 5585 7.255242 CGTCCCTGAGCAAATTGTATCATTATT 60.255 37.037 4.07 0.00 0.00 1.40
4241 5586 6.205464 CGTCCCTGAGCAAATTGTATCATTAT 59.795 38.462 4.07 0.00 0.00 1.28
4242 5587 5.527214 CGTCCCTGAGCAAATTGTATCATTA 59.473 40.000 4.07 0.00 0.00 1.90
4243 5588 4.336433 CGTCCCTGAGCAAATTGTATCATT 59.664 41.667 4.07 0.00 0.00 2.57
4256 5601 2.435059 GCAACTCCGTCCCTGAGC 60.435 66.667 0.00 0.00 32.98 4.26
4317 5663 5.126384 AGTGGTTAGTGCTAAGCTAGAGAAG 59.874 44.000 18.17 0.00 42.29 2.85
4324 5670 3.578716 TGAAGAGTGGTTAGTGCTAAGCT 59.421 43.478 18.17 6.54 42.29 3.74
4431 5786 9.419297 TGCAAACAAAATAGTACTAGACACTAG 57.581 33.333 8.85 0.00 32.24 2.57
4433 5788 8.848474 ATGCAAACAAAATAGTACTAGACACT 57.152 30.769 8.85 1.67 0.00 3.55
4486 6054 4.899352 AGGAGCTCACAGTTTTAGATGT 57.101 40.909 17.19 0.00 0.00 3.06
4488 6056 6.798427 TCATAGGAGCTCACAGTTTTAGAT 57.202 37.500 17.19 0.00 0.00 1.98
4496 6064 6.041409 TCCTTAGATTTCATAGGAGCTCACAG 59.959 42.308 17.19 2.11 33.08 3.66
4498 6066 6.412362 TCCTTAGATTTCATAGGAGCTCAC 57.588 41.667 17.19 5.01 33.08 3.51
4500 6068 7.003402 ACATCCTTAGATTTCATAGGAGCTC 57.997 40.000 4.71 4.71 39.97 4.09
4612 6182 1.374378 TACCGTTGAATCCGCGCAA 60.374 52.632 8.75 0.00 0.00 4.85
4644 6230 7.970102 AGTATGTACTTACTCAACCAAAGGAA 58.030 34.615 14.09 0.00 31.13 3.36
4668 6254 4.106197 CGTTAGACGGAGATTTCCTTGAG 58.894 47.826 0.10 0.00 41.67 3.02
4775 6361 0.598562 GACGTCCTCTCTGCACTTGA 59.401 55.000 3.51 0.00 0.00 3.02
4833 6419 1.008538 GCCGTTGAAGGTGCAGTTG 60.009 57.895 0.00 0.00 0.00 3.16
4931 6517 8.959676 TTAATTAATTGGTTAGTGGTTCCCTT 57.040 30.769 11.05 0.00 0.00 3.95
4937 6523 9.936329 ATCCAGATTAATTAATTGGTTAGTGGT 57.064 29.630 23.84 1.18 31.61 4.16
5352 6938 1.639298 GCAAATCTTCTCTGCCGCGT 61.639 55.000 4.92 0.00 0.00 6.01
5401 6987 0.263765 TAGCTCGGACCCTTGGGTAT 59.736 55.000 11.86 0.00 0.00 2.73
5419 7005 2.680841 GCAAATGTAGGGCGTGTCAATA 59.319 45.455 0.00 0.00 0.00 1.90
5530 7116 5.530915 TGTACCAAAATCCATTCATCGATCC 59.469 40.000 0.00 0.00 0.00 3.36
5623 7212 1.001378 CTTTTGTCGGCTCCAAACCTG 60.001 52.381 0.00 0.00 31.88 4.00
5650 7239 2.609747 ACTTCACCTTCTCTGCCACTA 58.390 47.619 0.00 0.00 0.00 2.74
5708 7297 3.833732 TGATACGACCTCTATGGCTTCT 58.166 45.455 0.00 0.00 40.22 2.85
5714 7303 7.036220 GGTTTATGGATGATACGACCTCTATG 58.964 42.308 0.00 0.00 0.00 2.23
5726 7315 1.270839 CGGAGCCGGTTTATGGATGAT 60.271 52.381 1.90 0.00 35.56 2.45
5729 7318 0.179056 CACGGAGCCGGTTTATGGAT 60.179 55.000 14.07 0.00 44.69 3.41
5734 7323 1.448893 GCATCACGGAGCCGGTTTA 60.449 57.895 14.07 0.00 44.69 2.01
5738 7327 3.274586 CATGCATCACGGAGCCGG 61.275 66.667 14.07 0.00 44.69 6.13
5770 7359 1.144936 GCTTGCTGCGAGGGACTAT 59.855 57.895 18.18 0.00 41.55 2.12
5771 7360 2.579201 GCTTGCTGCGAGGGACTA 59.421 61.111 18.18 0.00 41.55 2.59
5782 7371 0.322277 AGCTACACATGCAGCTTGCT 60.322 50.000 10.42 2.71 45.80 3.91
5783 7372 1.372582 TAGCTACACATGCAGCTTGC 58.627 50.000 18.77 5.39 45.80 4.01
5788 7377 5.397142 TCTATGGATAGCTACACATGCAG 57.603 43.478 17.75 10.72 0.00 4.41
5842 7431 2.554462 GCACTTCTGAGGGAAAAAGGAC 59.446 50.000 0.00 0.00 33.07 3.85
5851 7440 2.031120 TGTTTTTGGCACTTCTGAGGG 58.969 47.619 0.00 0.00 0.00 4.30
5868 7457 6.731467 ACACAATCCAAATCTATAGGGTGTT 58.269 36.000 0.00 0.00 32.39 3.32
5939 7528 3.097910 CGTAAAACATGCAAGCATACCG 58.902 45.455 7.29 0.00 34.91 4.02
5950 7542 4.855937 TGCACACATATTGCGTAAAACATG 59.144 37.500 0.00 0.00 43.34 3.21
5956 7548 5.302357 TGATTTGCACACATATTGCGTAA 57.698 34.783 0.00 0.00 43.34 3.18
5957 7549 4.954092 TGATTTGCACACATATTGCGTA 57.046 36.364 0.00 0.00 43.34 4.42
6078 7671 9.504705 TGGTATTACCCTAATAGGAAAACAGTA 57.495 33.333 8.12 0.00 37.67 2.74
6080 7673 9.862149 ATTGGTATTACCCTAATAGGAAAACAG 57.138 33.333 8.12 0.00 37.67 3.16
6197 7794 8.922931 AAAAATAAACAATCTTTTCCTGCCAT 57.077 26.923 0.00 0.00 0.00 4.40
6213 7810 9.410556 ACATTAGCACATGTGAGAAAAATAAAC 57.589 29.630 29.80 6.79 35.97 2.01
6226 7823 2.892852 AGCCACAAACATTAGCACATGT 59.107 40.909 0.00 0.00 39.17 3.21
6325 7925 1.745087 GTGTCACCCGAATGCATCATT 59.255 47.619 0.00 0.00 36.72 2.57
6337 7937 8.403236 GTTAACATCCATTAAATAGTGTCACCC 58.597 37.037 0.00 0.00 0.00 4.61
6421 8021 7.145323 GTGCAAGAACAAATATAAACTGGTGT 58.855 34.615 0.00 0.00 0.00 4.16
6508 8112 9.787435 ATTGCATGAAATTAAAATATGGCAGAT 57.213 25.926 0.00 0.00 0.00 2.90
6509 8113 9.047371 CATTGCATGAAATTAAAATATGGCAGA 57.953 29.630 0.00 0.00 0.00 4.26
6511 8115 7.499563 AGCATTGCATGAAATTAAAATATGGCA 59.500 29.630 11.91 0.00 0.00 4.92
6561 8166 2.029110 TGCATAAAGAGTTTTGGCAGGC 60.029 45.455 0.00 0.00 34.85 4.85
6599 8204 9.606631 GCCCATTGGTAATTAAAATGTTTGATA 57.393 29.630 15.72 0.00 30.84 2.15
6617 8222 1.077787 TTCTGCTACGGCCCATTGG 60.078 57.895 0.00 0.00 37.74 3.16
6627 8232 3.263261 GGTTTGAGCTACCTTCTGCTAC 58.737 50.000 0.00 0.00 39.91 3.58
6645 8250 3.574354 TGGTAAACACGTAAAGGGGTT 57.426 42.857 0.00 0.00 36.83 4.11
6646 8251 3.328637 AGATGGTAAACACGTAAAGGGGT 59.671 43.478 0.00 0.00 0.00 4.95
6647 8252 3.946606 AGATGGTAAACACGTAAAGGGG 58.053 45.455 0.00 0.00 0.00 4.79
6653 8258 9.438228 TGATCAAATTAAGATGGTAAACACGTA 57.562 29.630 0.00 0.00 0.00 3.57
6682 8287 7.499563 TGCTACGGTCCATTGCTAATTAAAATA 59.500 33.333 0.00 0.00 0.00 1.40
6707 8312 1.067283 CGGCCTGTAGCTATCCATCTG 60.067 57.143 0.00 0.00 43.05 2.90
6711 8316 0.397957 TTCCGGCCTGTAGCTATCCA 60.398 55.000 0.00 0.00 43.05 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.