Multiple sequence alignment - TraesCS7A01G160700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G160700 chr7A 100.000 2648 0 0 1 2648 116775956 116773309 0.000000e+00 4891.0
1 TraesCS7A01G160700 chr7A 96.587 586 16 3 2064 2648 101225977 101226559 0.000000e+00 968.0
2 TraesCS7A01G160700 chr7A 84.106 302 37 8 2354 2648 609223294 609223591 5.580000e-72 281.0
3 TraesCS7A01G160700 chr7D 90.909 1507 71 19 350 1850 111747896 111746450 0.000000e+00 1964.0
4 TraesCS7A01G160700 chr7D 84.818 303 35 8 2353 2648 40439845 40440143 7.170000e-76 294.0
5 TraesCS7A01G160700 chr7D 84.818 303 35 8 2353 2648 499528255 499528553 7.170000e-76 294.0
6 TraesCS7A01G160700 chr7D 75.556 225 40 4 18 242 30244901 30244692 2.170000e-16 97.1
7 TraesCS7A01G160700 chr7D 88.608 79 8 1 15 93 574227320 574227243 7.800000e-16 95.3
8 TraesCS7A01G160700 chr7B 90.729 1467 74 22 351 1810 71277068 71275657 0.000000e+00 1899.0
9 TraesCS7A01G160700 chr7B 86.554 766 63 16 1031 1792 428782922 428783651 0.000000e+00 808.0
10 TraesCS7A01G160700 chr7B 89.157 166 13 3 1900 2065 71275440 71275280 4.470000e-48 202.0
11 TraesCS7A01G160700 chr1A 97.246 581 13 3 2069 2648 551872035 551872613 0.000000e+00 981.0
12 TraesCS7A01G160700 chr1A 92.492 333 19 5 2069 2399 33961686 33962014 3.090000e-129 472.0
13 TraesCS7A01G160700 chr6B 96.897 580 14 3 2070 2648 42401554 42400978 0.000000e+00 968.0
14 TraesCS7A01G160700 chr6B 84.735 642 50 20 1156 1792 637178829 637179427 1.360000e-167 599.0
15 TraesCS7A01G160700 chr6B 78.423 241 42 7 11 247 201299073 201298839 5.910000e-32 148.0
16 TraesCS7A01G160700 chr6B 88.679 53 4 2 125 176 258754681 258754732 2.200000e-06 63.9
17 TraesCS7A01G160700 chr2D 89.262 745 48 16 1048 1792 245573800 245573088 0.000000e+00 904.0
18 TraesCS7A01G160700 chr2D 80.859 256 34 8 15 259 161395221 161395472 1.250000e-43 187.0
19 TraesCS7A01G160700 chr2D 81.818 220 35 5 32 249 551418973 551418757 2.090000e-41 180.0
20 TraesCS7A01G160700 chr1B 92.360 589 36 7 2064 2648 606320441 606321024 0.000000e+00 830.0
21 TraesCS7A01G160700 chr1B 86.965 537 43 8 1251 1778 468219356 468218838 1.770000e-161 579.0
22 TraesCS7A01G160700 chr1B 83.871 93 12 3 101 193 317316792 317316703 4.700000e-13 86.1
23 TraesCS7A01G160700 chr2A 86.086 769 73 16 1031 1792 424539243 424538502 0.000000e+00 797.0
24 TraesCS7A01G160700 chr2A 85.433 762 74 18 1031 1792 302435638 302436362 0.000000e+00 758.0
25 TraesCS7A01G160700 chr2A 92.771 332 18 5 2069 2399 701494579 701494905 2.390000e-130 475.0
26 TraesCS7A01G160700 chr2A 91.566 332 23 4 2069 2399 758495713 758496040 1.120000e-123 453.0
27 TraesCS7A01G160700 chr3B 92.870 547 32 5 2103 2648 754265038 754265578 0.000000e+00 787.0
28 TraesCS7A01G160700 chr5A 84.777 762 83 15 1031 1792 222770847 222770119 0.000000e+00 734.0
29 TraesCS7A01G160700 chr5A 90.351 228 15 7 2069 2293 368129444 368129667 2.580000e-75 292.0
30 TraesCS7A01G160700 chr5A 86.250 80 10 1 14 93 126433365 126433443 4.700000e-13 86.1
31 TraesCS7A01G160700 chr4A 84.514 762 81 11 1031 1792 7883571 7884295 0.000000e+00 719.0
32 TraesCS7A01G160700 chr4A 83.727 762 82 20 1031 1792 535940745 535941464 0.000000e+00 682.0
33 TraesCS7A01G160700 chr5B 84.299 535 44 16 1031 1565 291615415 291614921 1.100000e-133 486.0
34 TraesCS7A01G160700 chr5B 80.272 147 27 2 17 162 320476725 320476580 2.790000e-20 110.0
35 TraesCS7A01G160700 chr3D 84.818 303 35 8 2353 2648 596637271 596637569 7.170000e-76 294.0
36 TraesCS7A01G160700 chr3D 87.000 100 10 3 151 249 461555491 461555588 2.790000e-20 110.0
37 TraesCS7A01G160700 chr3D 83.562 73 10 2 261 332 537406882 537406811 1.700000e-07 67.6
38 TraesCS7A01G160700 chr2B 83.750 240 33 6 21 259 609207880 609207646 3.430000e-54 222.0
39 TraesCS7A01G160700 chr1D 83.265 245 34 7 15 259 462747614 462747851 4.440000e-53 219.0
40 TraesCS7A01G160700 chr1D 100.000 30 0 0 306 335 114331282 114331311 3.680000e-04 56.5
41 TraesCS7A01G160700 chr3A 88.406 69 7 1 11 79 745528808 745528875 6.070000e-12 82.4
42 TraesCS7A01G160700 chr5D 85.938 64 7 2 268 330 100128333 100128271 1.700000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G160700 chr7A 116773309 116775956 2647 True 4891.0 4891 100.000 1 2648 1 chr7A.!!$R1 2647
1 TraesCS7A01G160700 chr7A 101225977 101226559 582 False 968.0 968 96.587 2064 2648 1 chr7A.!!$F1 584
2 TraesCS7A01G160700 chr7D 111746450 111747896 1446 True 1964.0 1964 90.909 350 1850 1 chr7D.!!$R2 1500
3 TraesCS7A01G160700 chr7B 71275280 71277068 1788 True 1050.5 1899 89.943 351 2065 2 chr7B.!!$R1 1714
4 TraesCS7A01G160700 chr7B 428782922 428783651 729 False 808.0 808 86.554 1031 1792 1 chr7B.!!$F1 761
5 TraesCS7A01G160700 chr1A 551872035 551872613 578 False 981.0 981 97.246 2069 2648 1 chr1A.!!$F2 579
6 TraesCS7A01G160700 chr6B 42400978 42401554 576 True 968.0 968 96.897 2070 2648 1 chr6B.!!$R1 578
7 TraesCS7A01G160700 chr6B 637178829 637179427 598 False 599.0 599 84.735 1156 1792 1 chr6B.!!$F2 636
8 TraesCS7A01G160700 chr2D 245573088 245573800 712 True 904.0 904 89.262 1048 1792 1 chr2D.!!$R1 744
9 TraesCS7A01G160700 chr1B 606320441 606321024 583 False 830.0 830 92.360 2064 2648 1 chr1B.!!$F1 584
10 TraesCS7A01G160700 chr1B 468218838 468219356 518 True 579.0 579 86.965 1251 1778 1 chr1B.!!$R2 527
11 TraesCS7A01G160700 chr2A 424538502 424539243 741 True 797.0 797 86.086 1031 1792 1 chr2A.!!$R1 761
12 TraesCS7A01G160700 chr2A 302435638 302436362 724 False 758.0 758 85.433 1031 1792 1 chr2A.!!$F1 761
13 TraesCS7A01G160700 chr3B 754265038 754265578 540 False 787.0 787 92.870 2103 2648 1 chr3B.!!$F1 545
14 TraesCS7A01G160700 chr5A 222770119 222770847 728 True 734.0 734 84.777 1031 1792 1 chr5A.!!$R1 761
15 TraesCS7A01G160700 chr4A 7883571 7884295 724 False 719.0 719 84.514 1031 1792 1 chr4A.!!$F1 761
16 TraesCS7A01G160700 chr4A 535940745 535941464 719 False 682.0 682 83.727 1031 1792 1 chr4A.!!$F2 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.033504 TGAGACGAGTTTGAGGTGCC 59.966 55.0 0.0 0.0 0.0 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1798 1878 0.037697 TCAGAATCGGTTGACGTGGG 60.038 55.0 0.0 0.0 44.69 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.953020 GAGCATCTATAGCCGGACTTG 58.047 52.381 5.05 0.00 0.00 3.16
38 39 1.620819 AGCATCTATAGCCGGACTTGG 59.379 52.381 5.05 0.00 0.00 3.61
49 50 2.180674 GGACTTGGCAAATCCGACC 58.819 57.895 12.45 0.97 37.80 4.79
50 51 1.313091 GGACTTGGCAAATCCGACCC 61.313 60.000 12.45 0.00 37.80 4.46
51 52 1.304134 ACTTGGCAAATCCGACCCC 60.304 57.895 0.00 0.00 37.80 4.95
52 53 1.000896 CTTGGCAAATCCGACCCCT 60.001 57.895 0.00 0.00 37.80 4.79
53 54 0.611896 CTTGGCAAATCCGACCCCTT 60.612 55.000 0.00 0.00 37.80 3.95
54 55 0.699399 TTGGCAAATCCGACCCCTTA 59.301 50.000 0.00 0.00 37.80 2.69
55 56 0.923358 TGGCAAATCCGACCCCTTAT 59.077 50.000 0.00 0.00 37.80 1.73
56 57 1.286553 TGGCAAATCCGACCCCTTATT 59.713 47.619 0.00 0.00 37.80 1.40
57 58 2.510382 TGGCAAATCCGACCCCTTATTA 59.490 45.455 0.00 0.00 37.80 0.98
58 59 2.882761 GGCAAATCCGACCCCTTATTAC 59.117 50.000 0.00 0.00 0.00 1.89
59 60 2.546789 GCAAATCCGACCCCTTATTACG 59.453 50.000 0.00 0.00 0.00 3.18
60 61 2.538512 AATCCGACCCCTTATTACGC 57.461 50.000 0.00 0.00 0.00 4.42
61 62 0.683412 ATCCGACCCCTTATTACGCC 59.317 55.000 0.00 0.00 0.00 5.68
62 63 1.070275 CCGACCCCTTATTACGCCC 59.930 63.158 0.00 0.00 0.00 6.13
63 64 1.688269 CCGACCCCTTATTACGCCCA 61.688 60.000 0.00 0.00 0.00 5.36
64 65 0.531311 CGACCCCTTATTACGCCCAC 60.531 60.000 0.00 0.00 0.00 4.61
66 67 1.227734 CCCCTTATTACGCCCACGG 60.228 63.158 0.00 0.00 46.04 4.94
67 68 1.688269 CCCCTTATTACGCCCACGGA 61.688 60.000 0.00 0.00 46.04 4.69
68 69 0.531311 CCCTTATTACGCCCACGGAC 60.531 60.000 0.00 0.00 46.04 4.79
69 70 0.462789 CCTTATTACGCCCACGGACT 59.537 55.000 0.00 0.00 46.04 3.85
70 71 1.537562 CCTTATTACGCCCACGGACTC 60.538 57.143 0.00 0.00 46.04 3.36
71 72 0.101040 TTATTACGCCCACGGACTCG 59.899 55.000 0.00 0.00 46.04 4.18
72 73 2.340453 TATTACGCCCACGGACTCGC 62.340 60.000 0.00 0.00 46.04 5.03
99 100 3.716195 CCCACGGGCACATCCAGA 61.716 66.667 0.00 0.00 36.21 3.86
100 101 2.436646 CCACGGGCACATCCAGAC 60.437 66.667 0.00 0.00 36.21 3.51
101 102 2.815211 CACGGGCACATCCAGACG 60.815 66.667 0.00 0.00 36.21 4.18
102 103 4.082523 ACGGGCACATCCAGACGG 62.083 66.667 0.00 0.00 36.21 4.79
105 106 4.101448 GGCACATCCAGACGGCCT 62.101 66.667 0.00 0.00 41.39 5.19
106 107 2.512515 GCACATCCAGACGGCCTC 60.513 66.667 0.00 0.00 0.00 4.70
107 108 3.023949 GCACATCCAGACGGCCTCT 62.024 63.158 0.00 0.00 0.00 3.69
108 109 1.142748 CACATCCAGACGGCCTCTC 59.857 63.158 0.00 0.00 0.00 3.20
109 110 1.305297 ACATCCAGACGGCCTCTCA 60.305 57.895 0.00 0.00 0.00 3.27
110 111 0.689080 ACATCCAGACGGCCTCTCAT 60.689 55.000 0.00 0.00 0.00 2.90
111 112 1.332195 CATCCAGACGGCCTCTCATA 58.668 55.000 0.00 0.00 0.00 2.15
112 113 1.898472 CATCCAGACGGCCTCTCATAT 59.102 52.381 0.00 0.00 0.00 1.78
113 114 2.088104 TCCAGACGGCCTCTCATATT 57.912 50.000 0.00 0.00 0.00 1.28
114 115 2.398588 TCCAGACGGCCTCTCATATTT 58.601 47.619 0.00 0.00 0.00 1.40
115 116 2.365617 TCCAGACGGCCTCTCATATTTC 59.634 50.000 0.00 0.00 0.00 2.17
116 117 2.548920 CCAGACGGCCTCTCATATTTCC 60.549 54.545 0.00 0.00 0.00 3.13
117 118 2.103094 CAGACGGCCTCTCATATTTCCA 59.897 50.000 0.00 0.00 0.00 3.53
118 119 2.975489 AGACGGCCTCTCATATTTCCAT 59.025 45.455 0.00 0.00 0.00 3.41
119 120 3.007398 AGACGGCCTCTCATATTTCCATC 59.993 47.826 0.00 0.00 0.00 3.51
120 121 2.039084 ACGGCCTCTCATATTTCCATCC 59.961 50.000 0.00 0.00 0.00 3.51
121 122 2.616510 CGGCCTCTCATATTTCCATCCC 60.617 54.545 0.00 0.00 0.00 3.85
122 123 2.616510 GGCCTCTCATATTTCCATCCCG 60.617 54.545 0.00 0.00 0.00 5.14
123 124 2.616510 GCCTCTCATATTTCCATCCCGG 60.617 54.545 0.00 0.00 0.00 5.73
124 125 2.616510 CCTCTCATATTTCCATCCCGGC 60.617 54.545 0.00 0.00 33.14 6.13
125 126 2.038952 CTCTCATATTTCCATCCCGGCA 59.961 50.000 0.00 0.00 33.14 5.69
126 127 2.644299 TCTCATATTTCCATCCCGGCAT 59.356 45.455 0.00 0.00 33.14 4.40
127 128 3.012518 CTCATATTTCCATCCCGGCATC 58.987 50.000 0.00 0.00 33.14 3.91
128 129 2.094675 CATATTTCCATCCCGGCATCC 58.905 52.381 0.00 0.00 33.14 3.51
129 130 1.144691 TATTTCCATCCCGGCATCCA 58.855 50.000 0.00 0.00 33.14 3.41
130 131 0.468029 ATTTCCATCCCGGCATCCAC 60.468 55.000 0.00 0.00 33.14 4.02
131 132 1.857638 TTTCCATCCCGGCATCCACA 61.858 55.000 0.00 0.00 33.14 4.17
132 133 1.644437 TTCCATCCCGGCATCCACAT 61.644 55.000 0.00 0.00 33.14 3.21
133 134 0.766288 TCCATCCCGGCATCCACATA 60.766 55.000 0.00 0.00 33.14 2.29
134 135 0.329261 CCATCCCGGCATCCACATAT 59.671 55.000 0.00 0.00 0.00 1.78
135 136 1.559219 CCATCCCGGCATCCACATATA 59.441 52.381 0.00 0.00 0.00 0.86
136 137 2.173356 CCATCCCGGCATCCACATATAT 59.827 50.000 0.00 0.00 0.00 0.86
137 138 3.470709 CATCCCGGCATCCACATATATC 58.529 50.000 0.00 0.00 0.00 1.63
138 139 2.545810 TCCCGGCATCCACATATATCA 58.454 47.619 0.00 0.00 0.00 2.15
139 140 2.909662 TCCCGGCATCCACATATATCAA 59.090 45.455 0.00 0.00 0.00 2.57
140 141 3.329225 TCCCGGCATCCACATATATCAAA 59.671 43.478 0.00 0.00 0.00 2.69
141 142 4.018506 TCCCGGCATCCACATATATCAAAT 60.019 41.667 0.00 0.00 0.00 2.32
142 143 4.336433 CCCGGCATCCACATATATCAAATC 59.664 45.833 0.00 0.00 0.00 2.17
143 144 5.188434 CCGGCATCCACATATATCAAATCT 58.812 41.667 0.00 0.00 0.00 2.40
144 145 5.065602 CCGGCATCCACATATATCAAATCTG 59.934 44.000 0.00 0.00 0.00 2.90
145 146 5.876460 CGGCATCCACATATATCAAATCTGA 59.124 40.000 0.00 0.00 35.56 3.27
146 147 6.183360 CGGCATCCACATATATCAAATCTGAC 60.183 42.308 0.00 0.00 33.30 3.51
147 148 6.883217 GGCATCCACATATATCAAATCTGACT 59.117 38.462 0.00 0.00 33.30 3.41
148 149 7.065563 GGCATCCACATATATCAAATCTGACTC 59.934 40.741 0.00 0.00 33.30 3.36
149 150 7.823310 GCATCCACATATATCAAATCTGACTCT 59.177 37.037 0.00 0.00 33.30 3.24
150 151 9.368674 CATCCACATATATCAAATCTGACTCTC 57.631 37.037 0.00 0.00 33.30 3.20
151 152 8.482852 TCCACATATATCAAATCTGACTCTCA 57.517 34.615 0.00 0.00 33.30 3.27
152 153 8.927411 TCCACATATATCAAATCTGACTCTCAA 58.073 33.333 0.00 0.00 33.30 3.02
153 154 9.551734 CCACATATATCAAATCTGACTCTCAAA 57.448 33.333 0.00 0.00 33.30 2.69
159 160 6.997239 TCAAATCTGACTCTCAAATCCATG 57.003 37.500 0.00 0.00 0.00 3.66
160 161 5.356190 TCAAATCTGACTCTCAAATCCATGC 59.644 40.000 0.00 0.00 0.00 4.06
161 162 3.986996 TCTGACTCTCAAATCCATGCA 57.013 42.857 0.00 0.00 0.00 3.96
162 163 3.603532 TCTGACTCTCAAATCCATGCAC 58.396 45.455 0.00 0.00 0.00 4.57
163 164 2.349590 TGACTCTCAAATCCATGCACG 58.650 47.619 0.00 0.00 0.00 5.34
164 165 2.289631 TGACTCTCAAATCCATGCACGT 60.290 45.455 0.00 0.00 0.00 4.49
165 166 2.744202 GACTCTCAAATCCATGCACGTT 59.256 45.455 0.00 0.00 0.00 3.99
166 167 2.485426 ACTCTCAAATCCATGCACGTTG 59.515 45.455 0.00 0.00 0.00 4.10
167 168 2.743664 CTCTCAAATCCATGCACGTTGA 59.256 45.455 0.00 0.00 0.00 3.18
168 169 3.346315 TCTCAAATCCATGCACGTTGAT 58.654 40.909 0.00 0.00 0.00 2.57
169 170 3.374988 TCTCAAATCCATGCACGTTGATC 59.625 43.478 0.00 0.00 0.00 2.92
170 171 3.080319 TCAAATCCATGCACGTTGATCA 58.920 40.909 0.00 0.00 0.00 2.92
171 172 3.695556 TCAAATCCATGCACGTTGATCAT 59.304 39.130 0.00 0.00 0.00 2.45
172 173 4.880696 TCAAATCCATGCACGTTGATCATA 59.119 37.500 0.00 0.00 0.00 2.15
173 174 4.818534 AATCCATGCACGTTGATCATAC 57.181 40.909 0.00 0.00 0.00 2.39
174 175 3.258971 TCCATGCACGTTGATCATACA 57.741 42.857 0.00 0.00 0.00 2.29
175 176 3.604582 TCCATGCACGTTGATCATACAA 58.395 40.909 0.00 0.00 0.00 2.41
176 177 3.622612 TCCATGCACGTTGATCATACAAG 59.377 43.478 0.00 0.00 0.00 3.16
177 178 3.357021 CATGCACGTTGATCATACAAGC 58.643 45.455 0.00 5.67 0.00 4.01
178 179 2.698803 TGCACGTTGATCATACAAGCT 58.301 42.857 0.00 0.00 0.00 3.74
179 180 3.855858 TGCACGTTGATCATACAAGCTA 58.144 40.909 0.00 0.00 0.00 3.32
180 181 4.249661 TGCACGTTGATCATACAAGCTAA 58.750 39.130 0.00 0.00 0.00 3.09
181 182 4.875536 TGCACGTTGATCATACAAGCTAAT 59.124 37.500 0.00 0.00 0.00 1.73
182 183 5.200454 GCACGTTGATCATACAAGCTAATG 58.800 41.667 0.00 0.00 0.00 1.90
183 184 5.220662 GCACGTTGATCATACAAGCTAATGT 60.221 40.000 0.00 0.00 37.32 2.71
184 185 6.414079 CACGTTGATCATACAAGCTAATGTC 58.586 40.000 0.00 0.00 34.75 3.06
185 186 5.232202 ACGTTGATCATACAAGCTAATGTCG 59.768 40.000 0.00 0.00 34.75 4.35
186 187 5.435557 GTTGATCATACAAGCTAATGTCGC 58.564 41.667 0.00 0.00 34.75 5.19
187 188 4.692228 TGATCATACAAGCTAATGTCGCA 58.308 39.130 0.00 0.00 34.75 5.10
188 189 4.507756 TGATCATACAAGCTAATGTCGCAC 59.492 41.667 0.00 0.00 34.75 5.34
189 190 3.855858 TCATACAAGCTAATGTCGCACA 58.144 40.909 0.00 0.00 34.75 4.57
190 191 4.441792 TCATACAAGCTAATGTCGCACAT 58.558 39.130 0.00 0.00 41.31 3.21
191 192 5.596845 TCATACAAGCTAATGTCGCACATA 58.403 37.500 0.00 0.00 37.97 2.29
192 193 6.045955 TCATACAAGCTAATGTCGCACATAA 58.954 36.000 0.00 0.00 37.97 1.90
193 194 6.536941 TCATACAAGCTAATGTCGCACATAAA 59.463 34.615 0.00 0.00 37.97 1.40
194 195 5.818136 ACAAGCTAATGTCGCACATAAAT 57.182 34.783 0.00 0.00 37.97 1.40
195 196 6.918892 ACAAGCTAATGTCGCACATAAATA 57.081 33.333 0.00 0.00 37.97 1.40
196 197 6.948353 ACAAGCTAATGTCGCACATAAATAG 58.052 36.000 0.00 3.41 37.97 1.73
197 198 5.597813 AGCTAATGTCGCACATAAATAGC 57.402 39.130 15.90 15.90 40.28 2.97
198 199 5.056480 AGCTAATGTCGCACATAAATAGCA 58.944 37.500 20.83 0.00 41.44 3.49
199 200 5.527214 AGCTAATGTCGCACATAAATAGCAA 59.473 36.000 20.83 0.00 41.44 3.91
200 201 6.038161 AGCTAATGTCGCACATAAATAGCAAA 59.962 34.615 20.83 0.00 41.44 3.68
201 202 6.857964 GCTAATGTCGCACATAAATAGCAAAT 59.142 34.615 17.36 0.67 39.98 2.32
202 203 7.149080 GCTAATGTCGCACATAAATAGCAAATG 60.149 37.037 17.36 0.00 39.98 2.32
203 204 5.559427 TGTCGCACATAAATAGCAAATGT 57.441 34.783 0.00 0.00 34.22 2.71
204 205 5.948588 TGTCGCACATAAATAGCAAATGTT 58.051 33.333 0.00 0.00 31.60 2.71
205 206 5.799435 TGTCGCACATAAATAGCAAATGTTG 59.201 36.000 0.00 0.00 31.60 3.33
206 207 6.027131 GTCGCACATAAATAGCAAATGTTGA 58.973 36.000 0.00 0.00 31.60 3.18
207 208 6.692681 GTCGCACATAAATAGCAAATGTTGAT 59.307 34.615 0.00 0.00 31.60 2.57
208 209 7.855409 GTCGCACATAAATAGCAAATGTTGATA 59.145 33.333 0.00 0.00 35.81 2.15
209 210 7.855409 TCGCACATAAATAGCAAATGTTGATAC 59.145 33.333 0.00 0.00 33.94 2.24
210 211 7.149303 CGCACATAAATAGCAAATGTTGATACG 60.149 37.037 0.00 0.00 33.94 3.06
211 212 7.855409 GCACATAAATAGCAAATGTTGATACGA 59.145 33.333 0.00 0.00 33.94 3.43
212 213 9.715123 CACATAAATAGCAAATGTTGATACGAA 57.285 29.630 0.00 0.00 33.94 3.85
218 219 9.454585 AATAGCAAATGTTGATACGAATCATTG 57.545 29.630 0.00 0.00 41.73 2.82
219 220 7.087409 AGCAAATGTTGATACGAATCATTGA 57.913 32.000 0.00 0.00 41.73 2.57
220 221 7.709947 AGCAAATGTTGATACGAATCATTGAT 58.290 30.769 0.00 0.00 41.73 2.57
221 222 8.839343 AGCAAATGTTGATACGAATCATTGATA 58.161 29.630 0.00 0.00 41.73 2.15
222 223 9.110617 GCAAATGTTGATACGAATCATTGATAG 57.889 33.333 0.00 0.38 41.73 2.08
264 265 7.704789 TTTTTAAGTCTCTAAACTCGTGACC 57.295 36.000 0.00 0.00 0.00 4.02
265 266 3.555917 AAGTCTCTAAACTCGTGACCG 57.444 47.619 0.00 0.00 0.00 4.79
266 267 2.502295 AGTCTCTAAACTCGTGACCGT 58.498 47.619 0.00 0.00 35.01 4.83
267 268 3.668447 AGTCTCTAAACTCGTGACCGTA 58.332 45.455 0.00 0.00 35.01 4.02
268 269 3.434984 AGTCTCTAAACTCGTGACCGTAC 59.565 47.826 0.00 0.00 35.01 3.67
269 270 3.187227 GTCTCTAAACTCGTGACCGTACA 59.813 47.826 0.00 0.00 35.01 2.90
270 271 3.814842 TCTCTAAACTCGTGACCGTACAA 59.185 43.478 0.00 0.00 35.01 2.41
271 272 4.456911 TCTCTAAACTCGTGACCGTACAAT 59.543 41.667 0.00 0.00 35.01 2.71
272 273 4.478699 TCTAAACTCGTGACCGTACAATG 58.521 43.478 0.00 0.00 35.01 2.82
273 274 3.374220 AAACTCGTGACCGTACAATGA 57.626 42.857 0.00 0.00 35.01 2.57
274 275 2.342910 ACTCGTGACCGTACAATGAC 57.657 50.000 0.00 0.00 35.01 3.06
275 276 1.068055 ACTCGTGACCGTACAATGACC 60.068 52.381 0.00 0.00 35.01 4.02
276 277 0.109643 TCGTGACCGTACAATGACCG 60.110 55.000 0.00 0.00 35.01 4.79
277 278 1.680105 CGTGACCGTACAATGACCGC 61.680 60.000 0.00 0.00 0.00 5.68
278 279 1.444724 TGACCGTACAATGACCGCG 60.445 57.895 0.00 0.00 0.00 6.46
279 280 2.795389 GACCGTACAATGACCGCGC 61.795 63.158 0.00 0.00 0.00 6.86
280 281 3.908951 CCGTACAATGACCGCGCG 61.909 66.667 25.67 25.67 0.00 6.86
281 282 2.877113 CGTACAATGACCGCGCGA 60.877 61.111 34.63 12.79 0.00 5.87
282 283 2.693285 GTACAATGACCGCGCGAC 59.307 61.111 34.63 24.33 0.00 5.19
283 284 2.507547 TACAATGACCGCGCGACC 60.508 61.111 34.63 22.26 0.00 4.79
284 285 3.993376 TACAATGACCGCGCGACCC 62.993 63.158 34.63 19.58 0.00 4.46
297 298 4.580551 GACCCGCCCGGACGTATG 62.581 72.222 9.94 0.00 37.50 2.39
299 300 4.280494 CCCGCCCGGACGTATGAG 62.280 72.222 9.94 0.00 37.50 2.90
300 301 3.214123 CCGCCCGGACGTATGAGA 61.214 66.667 9.94 0.00 37.50 3.27
301 302 2.025727 CGCCCGGACGTATGAGAC 59.974 66.667 0.73 0.00 0.00 3.36
314 315 2.086054 ATGAGACGAGTTTGAGGTGC 57.914 50.000 0.00 0.00 0.00 5.01
315 316 0.033504 TGAGACGAGTTTGAGGTGCC 59.966 55.000 0.00 0.00 0.00 5.01
316 317 0.670854 GAGACGAGTTTGAGGTGCCC 60.671 60.000 0.00 0.00 0.00 5.36
317 318 2.027625 GACGAGTTTGAGGTGCCCG 61.028 63.158 0.00 0.00 0.00 6.13
318 319 2.742372 CGAGTTTGAGGTGCCCGG 60.742 66.667 0.00 0.00 0.00 5.73
319 320 3.056328 GAGTTTGAGGTGCCCGGC 61.056 66.667 1.04 1.04 0.00 6.13
320 321 3.553095 GAGTTTGAGGTGCCCGGCT 62.553 63.158 11.61 0.00 0.00 5.52
321 322 3.365265 GTTTGAGGTGCCCGGCTG 61.365 66.667 11.61 0.00 0.00 4.85
322 323 3.884774 TTTGAGGTGCCCGGCTGT 61.885 61.111 11.61 0.00 0.00 4.40
323 324 2.521451 TTTGAGGTGCCCGGCTGTA 61.521 57.895 11.61 0.00 0.00 2.74
324 325 2.463589 TTTGAGGTGCCCGGCTGTAG 62.464 60.000 11.61 0.00 0.00 2.74
325 326 3.075005 GAGGTGCCCGGCTGTAGA 61.075 66.667 11.61 0.00 0.00 2.59
326 327 3.077556 AGGTGCCCGGCTGTAGAG 61.078 66.667 11.61 0.00 0.00 2.43
327 328 4.162690 GGTGCCCGGCTGTAGAGG 62.163 72.222 11.61 0.00 0.00 3.69
328 329 4.840005 GTGCCCGGCTGTAGAGGC 62.840 72.222 11.61 2.95 45.96 4.70
330 331 4.228567 GCCCGGCTGTAGAGGCTC 62.229 72.222 11.82 6.34 42.73 4.70
331 332 2.443016 CCCGGCTGTAGAGGCTCT 60.443 66.667 22.48 22.48 42.73 4.09
332 333 1.152735 CCCGGCTGTAGAGGCTCTA 60.153 63.158 20.11 20.11 42.73 2.43
333 334 0.755698 CCCGGCTGTAGAGGCTCTAA 60.756 60.000 25.07 14.28 42.73 2.10
334 335 1.112113 CCGGCTGTAGAGGCTCTAAA 58.888 55.000 25.07 19.30 42.73 1.85
335 336 1.202428 CCGGCTGTAGAGGCTCTAAAC 60.202 57.143 25.07 17.12 42.73 2.01
336 337 1.751924 CGGCTGTAGAGGCTCTAAACT 59.248 52.381 25.07 1.84 42.73 2.66
337 338 2.223618 CGGCTGTAGAGGCTCTAAACTC 60.224 54.545 25.07 13.50 42.73 3.01
338 339 3.028130 GGCTGTAGAGGCTCTAAACTCT 58.972 50.000 25.07 0.26 45.45 3.24
339 340 4.208746 GGCTGTAGAGGCTCTAAACTCTA 58.791 47.826 25.07 0.86 43.42 2.43
348 349 8.685838 AGAGGCTCTAAACTCTACTATGTTAG 57.314 38.462 17.09 0.00 42.00 2.34
419 420 2.630158 CAGGACATCTTCAAGCTCCTG 58.370 52.381 9.88 9.88 41.56 3.86
420 421 2.027377 CAGGACATCTTCAAGCTCCTGT 60.027 50.000 13.75 1.08 42.14 4.00
430 431 2.816087 TCAAGCTCCTGTTTGCTGAATC 59.184 45.455 0.00 0.00 39.71 2.52
434 435 2.094417 GCTCCTGTTTGCTGAATCGTAC 59.906 50.000 0.00 0.00 0.00 3.67
435 436 3.325870 CTCCTGTTTGCTGAATCGTACA 58.674 45.455 0.00 0.00 0.00 2.90
436 437 3.064207 TCCTGTTTGCTGAATCGTACAC 58.936 45.455 0.00 0.00 0.00 2.90
437 438 3.067106 CCTGTTTGCTGAATCGTACACT 58.933 45.455 0.00 0.00 0.00 3.55
438 439 3.120546 CCTGTTTGCTGAATCGTACACTG 60.121 47.826 0.00 0.00 0.00 3.66
439 440 3.462982 TGTTTGCTGAATCGTACACTGT 58.537 40.909 0.00 0.00 0.00 3.55
446 447 3.281158 TGAATCGTACACTGTATCGGGA 58.719 45.455 0.00 0.51 0.00 5.14
469 470 0.468400 TGGTTTACCAGTTGCCCCAC 60.468 55.000 0.00 0.00 42.01 4.61
472 473 2.346284 TTTACCAGTTGCCCCACGCT 62.346 55.000 0.00 0.00 38.78 5.07
473 474 3.545124 TACCAGTTGCCCCACGCTG 62.545 63.158 0.00 0.00 38.78 5.18
625 626 2.287608 GCCGCAAAAATATACTCCTGCC 60.288 50.000 0.00 0.00 0.00 4.85
668 669 5.047377 ACACTATTTTATGTGGCAAGTTGGG 60.047 40.000 4.75 0.00 38.39 4.12
750 751 1.474077 GCCATGTTTGACTCACCATCC 59.526 52.381 0.00 0.00 0.00 3.51
751 752 2.881403 GCCATGTTTGACTCACCATCCT 60.881 50.000 0.00 0.00 0.00 3.24
752 753 3.012518 CCATGTTTGACTCACCATCCTC 58.987 50.000 0.00 0.00 0.00 3.71
753 754 2.859165 TGTTTGACTCACCATCCTCC 57.141 50.000 0.00 0.00 0.00 4.30
754 755 2.338809 TGTTTGACTCACCATCCTCCT 58.661 47.619 0.00 0.00 0.00 3.69
755 756 3.516586 TGTTTGACTCACCATCCTCCTA 58.483 45.455 0.00 0.00 0.00 2.94
756 757 4.104086 TGTTTGACTCACCATCCTCCTAT 58.896 43.478 0.00 0.00 0.00 2.57
757 758 4.162320 TGTTTGACTCACCATCCTCCTATC 59.838 45.833 0.00 0.00 0.00 2.08
758 759 2.964209 TGACTCACCATCCTCCTATCC 58.036 52.381 0.00 0.00 0.00 2.59
759 760 2.252714 GACTCACCATCCTCCTATCCC 58.747 57.143 0.00 0.00 0.00 3.85
760 761 1.580658 ACTCACCATCCTCCTATCCCA 59.419 52.381 0.00 0.00 0.00 4.37
805 806 2.768527 TCTTCTCATGTCCTCATCACCC 59.231 50.000 0.00 0.00 31.15 4.61
877 879 1.370437 CCATCCTCATCCTCAGCCG 59.630 63.158 0.00 0.00 0.00 5.52
886 895 0.539051 ATCCTCAGCCGAGTCCAAAG 59.461 55.000 0.00 0.00 37.59 2.77
887 896 0.832135 TCCTCAGCCGAGTCCAAAGT 60.832 55.000 0.00 0.00 37.59 2.66
888 897 0.035458 CCTCAGCCGAGTCCAAAGTT 59.965 55.000 0.00 0.00 37.59 2.66
889 898 1.433534 CTCAGCCGAGTCCAAAGTTC 58.566 55.000 0.00 0.00 34.29 3.01
890 899 0.034896 TCAGCCGAGTCCAAAGTTCC 59.965 55.000 0.00 0.00 0.00 3.62
891 900 0.250295 CAGCCGAGTCCAAAGTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
892 901 0.472471 AGCCGAGTCCAAAGTTCCAA 59.528 50.000 0.00 0.00 0.00 3.53
893 902 1.133915 AGCCGAGTCCAAAGTTCCAAA 60.134 47.619 0.00 0.00 0.00 3.28
936 945 1.226974 CTACCCACCTGCGTGATCG 60.227 63.158 0.00 0.00 43.14 3.69
937 946 1.663379 CTACCCACCTGCGTGATCGA 61.663 60.000 0.00 0.00 43.14 3.59
950 959 2.345641 CGTGATCGACAGTCAACAATCC 59.654 50.000 0.41 0.00 39.71 3.01
959 968 1.168714 GTCAACAATCCACCCAGCTC 58.831 55.000 0.00 0.00 0.00 4.09
980 989 2.353956 GCGCTCGATCGATCAGCA 60.354 61.111 31.01 15.56 33.51 4.41
981 990 2.363555 GCGCTCGATCGATCAGCAG 61.364 63.158 31.01 26.11 33.51 4.24
982 991 2.363555 CGCTCGATCGATCAGCAGC 61.364 63.158 31.01 27.05 33.51 5.25
983 992 2.363555 GCTCGATCGATCAGCAGCG 61.364 63.158 29.12 16.58 33.85 5.18
984 993 2.353956 TCGATCGATCAGCAGCGC 60.354 61.111 24.40 0.00 0.00 5.92
985 994 2.656328 CGATCGATCAGCAGCGCA 60.656 61.111 24.40 0.00 0.00 6.09
986 995 2.646445 CGATCGATCAGCAGCGCAG 61.646 63.158 24.40 1.31 0.00 5.18
1491 1535 1.153823 CTCCGTGTCCATGTCCGTC 60.154 63.158 0.00 0.00 0.00 4.79
1551 1598 2.360475 GACCTGAACCTGCTGCCC 60.360 66.667 0.00 0.00 0.00 5.36
1565 1612 4.778143 GCCCATGCCGGAGAACGT 62.778 66.667 5.05 0.00 42.24 3.99
1566 1613 2.511600 CCCATGCCGGAGAACGTC 60.512 66.667 5.05 0.00 42.24 4.34
1567 1614 2.264480 CCATGCCGGAGAACGTCA 59.736 61.111 5.05 0.00 42.24 4.35
1568 1615 1.375396 CCATGCCGGAGAACGTCAA 60.375 57.895 5.05 0.00 42.24 3.18
1569 1616 0.744414 CCATGCCGGAGAACGTCAAT 60.744 55.000 5.05 0.00 42.24 2.57
1632 1699 2.124942 CTCCCCGCCAAGAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
1726 1795 6.822073 TGTTGAATTCGATTAGGTATCACG 57.178 37.500 0.00 0.00 32.45 4.35
1727 1796 5.233476 TGTTGAATTCGATTAGGTATCACGC 59.767 40.000 0.00 0.00 32.45 5.34
1728 1797 4.939271 TGAATTCGATTAGGTATCACGCA 58.061 39.130 0.04 0.00 32.45 5.24
1729 1798 4.743151 TGAATTCGATTAGGTATCACGCAC 59.257 41.667 0.04 0.00 32.45 5.34
1751 1820 6.651308 CACCATGATTTGTTGATTTGTTGTG 58.349 36.000 0.00 0.00 0.00 3.33
1798 1878 7.340999 TGAAAACTATGGGCTTAATTAACCTCC 59.659 37.037 13.22 7.75 0.00 4.30
1822 1902 3.924073 CACGTCAACCGATTCTGACATAA 59.076 43.478 3.39 0.00 41.71 1.90
1828 1908 5.580691 TCAACCGATTCTGACATAACATCAC 59.419 40.000 0.00 0.00 0.00 3.06
1837 1917 5.348451 TCTGACATAACATCACACATTCACG 59.652 40.000 0.00 0.00 0.00 4.35
1850 1930 4.022935 ACACATTCACGTTACTCGACCTAA 60.023 41.667 0.00 0.00 42.86 2.69
1851 1931 4.919168 CACATTCACGTTACTCGACCTAAA 59.081 41.667 0.00 0.00 42.86 1.85
1858 2031 3.973135 CGTTACTCGACCTAAATCGGATG 59.027 47.826 0.00 0.00 42.50 3.51
1862 2035 4.145807 ACTCGACCTAAATCGGATGAGAT 58.854 43.478 6.33 0.00 42.50 2.75
1864 2037 2.989840 CGACCTAAATCGGATGAGATGC 59.010 50.000 0.00 0.00 38.47 3.91
1874 2047 2.134346 GGATGAGATGCTCTTCTTCGC 58.866 52.381 9.32 0.00 35.73 4.70
1878 2051 0.461693 AGATGCTCTTCTTCGCTGCC 60.462 55.000 0.00 0.00 0.00 4.85
1879 2052 1.760268 GATGCTCTTCTTCGCTGCCG 61.760 60.000 0.00 0.00 0.00 5.69
1880 2053 2.433318 GCTCTTCTTCGCTGCCGT 60.433 61.111 0.00 0.00 35.54 5.68
1884 2057 0.865769 TCTTCTTCGCTGCCGTTTTC 59.134 50.000 0.00 0.00 35.54 2.29
1885 2058 0.868406 CTTCTTCGCTGCCGTTTTCT 59.132 50.000 0.00 0.00 35.54 2.52
1886 2059 1.264288 CTTCTTCGCTGCCGTTTTCTT 59.736 47.619 0.00 0.00 35.54 2.52
1888 2061 1.796459 TCTTCGCTGCCGTTTTCTTAC 59.204 47.619 0.00 0.00 35.54 2.34
1889 2062 1.529438 CTTCGCTGCCGTTTTCTTACA 59.471 47.619 0.00 0.00 35.54 2.41
1890 2063 1.803334 TCGCTGCCGTTTTCTTACAT 58.197 45.000 0.00 0.00 35.54 2.29
1891 2064 1.730064 TCGCTGCCGTTTTCTTACATC 59.270 47.619 0.00 0.00 35.54 3.06
1892 2065 1.526986 CGCTGCCGTTTTCTTACATCG 60.527 52.381 0.00 0.00 0.00 3.84
1893 2066 1.730064 GCTGCCGTTTTCTTACATCGA 59.270 47.619 0.00 0.00 0.00 3.59
1894 2067 2.351726 GCTGCCGTTTTCTTACATCGAT 59.648 45.455 0.00 0.00 0.00 3.59
1895 2068 3.544244 GCTGCCGTTTTCTTACATCGATC 60.544 47.826 0.00 0.00 0.00 3.69
1896 2069 2.601314 TGCCGTTTTCTTACATCGATCG 59.399 45.455 9.36 9.36 0.00 3.69
1897 2070 2.596807 GCCGTTTTCTTACATCGATCGC 60.597 50.000 11.09 0.00 0.00 4.58
1898 2071 2.346376 CCGTTTTCTTACATCGATCGCG 60.346 50.000 11.09 0.00 39.35 5.87
1899 2072 2.278094 CGTTTTCTTACATCGATCGCGT 59.722 45.455 11.09 12.51 38.98 6.01
1900 2073 3.596454 CGTTTTCTTACATCGATCGCGTC 60.596 47.826 11.09 1.94 38.98 5.19
1901 2074 2.115348 TTCTTACATCGATCGCGTCC 57.885 50.000 11.09 0.00 38.98 4.79
1962 2179 3.545366 GAACTGGATGTTCCCCTCTAC 57.455 52.381 0.00 0.00 46.89 2.59
1963 2180 2.950990 ACTGGATGTTCCCCTCTACT 57.049 50.000 0.00 0.00 35.03 2.57
1964 2181 3.207044 ACTGGATGTTCCCCTCTACTT 57.793 47.619 0.00 0.00 35.03 2.24
1965 2182 2.840651 ACTGGATGTTCCCCTCTACTTG 59.159 50.000 0.00 0.00 35.03 3.16
1972 2189 6.352737 GGATGTTCCCCTCTACTTGTAAATCA 60.353 42.308 0.00 0.00 0.00 2.57
1979 2196 6.292150 CCCTCTACTTGTAAATCAATCTCCC 58.708 44.000 0.00 0.00 35.35 4.30
1997 2214 3.041940 GCCACCAGACCAACGTCG 61.042 66.667 0.00 0.00 44.28 5.12
2011 2228 1.429463 ACGTCGCTTCAGAATCCAAC 58.571 50.000 0.00 0.00 0.00 3.77
2015 2232 2.814336 GTCGCTTCAGAATCCAACCTTT 59.186 45.455 0.00 0.00 0.00 3.11
2021 2238 6.538742 CGCTTCAGAATCCAACCTTTCTATTA 59.461 38.462 0.00 0.00 31.15 0.98
2022 2239 7.254590 CGCTTCAGAATCCAACCTTTCTATTAG 60.255 40.741 0.00 0.00 31.15 1.73
2039 2256 1.527433 TAGGCCGATCAGGATCAGCG 61.527 60.000 10.45 0.00 41.03 5.18
2040 2257 2.730733 GCCGATCAGGATCAGCGA 59.269 61.111 9.72 0.00 45.00 4.93
2113 2331 4.619233 GGGGGCCAAGTCAAGTTT 57.381 55.556 4.39 0.00 0.00 2.66
2189 2407 7.634817 GCTACACGATACAAAACATTGATACAC 59.365 37.037 0.00 0.00 0.00 2.90
2190 2408 7.428282 ACACGATACAAAACATTGATACACA 57.572 32.000 0.00 0.00 0.00 3.72
2279 2499 8.446599 CAGGAAGAGAACTTACCTGTTAAAAA 57.553 34.615 0.00 0.00 41.22 1.94
2316 2536 3.326747 CCAAGTAAGTCTCTCGTTTGGG 58.673 50.000 0.00 0.00 32.09 4.12
2483 2703 5.126061 GGACCAGATTTATGACTTGCACATT 59.874 40.000 0.00 0.00 0.00 2.71
2495 2715 7.320443 TGACTTGCACATTAGCCTTATTAAG 57.680 36.000 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.734620 GCTATAGATGCTCTTACATTCTCTATG 57.265 37.037 3.21 0.00 40.26 2.23
4 5 8.912988 GGCTATAGATGCTCTTACATTCTCTAT 58.087 37.037 3.21 0.00 0.00 1.98
5 6 7.066404 CGGCTATAGATGCTCTTACATTCTCTA 59.934 40.741 3.21 0.00 0.00 2.43
6 7 6.127758 CGGCTATAGATGCTCTTACATTCTCT 60.128 42.308 3.21 0.00 0.00 3.10
7 8 6.033341 CGGCTATAGATGCTCTTACATTCTC 58.967 44.000 3.21 0.00 0.00 2.87
8 9 5.105554 CCGGCTATAGATGCTCTTACATTCT 60.106 44.000 3.21 0.00 0.00 2.40
9 10 5.105716 TCCGGCTATAGATGCTCTTACATTC 60.106 44.000 3.21 0.00 0.00 2.67
10 11 4.772624 TCCGGCTATAGATGCTCTTACATT 59.227 41.667 3.21 0.00 0.00 2.71
11 12 4.158764 GTCCGGCTATAGATGCTCTTACAT 59.841 45.833 3.21 0.00 0.00 2.29
12 13 3.506455 GTCCGGCTATAGATGCTCTTACA 59.494 47.826 3.21 0.00 0.00 2.41
13 14 3.759618 AGTCCGGCTATAGATGCTCTTAC 59.240 47.826 3.21 0.00 0.00 2.34
14 15 4.035612 AGTCCGGCTATAGATGCTCTTA 57.964 45.455 3.21 0.00 0.00 2.10
15 16 2.883026 AGTCCGGCTATAGATGCTCTT 58.117 47.619 3.21 0.00 0.00 2.85
16 17 2.560542 CAAGTCCGGCTATAGATGCTCT 59.439 50.000 3.21 0.00 0.00 4.09
17 18 2.353208 CCAAGTCCGGCTATAGATGCTC 60.353 54.545 3.21 0.00 0.00 4.26
18 19 1.620819 CCAAGTCCGGCTATAGATGCT 59.379 52.381 3.21 0.00 0.00 3.79
19 20 2.086054 CCAAGTCCGGCTATAGATGC 57.914 55.000 3.21 0.00 0.00 3.91
31 32 1.313091 GGGTCGGATTTGCCAAGTCC 61.313 60.000 8.84 8.84 35.94 3.85
32 33 1.313091 GGGGTCGGATTTGCCAAGTC 61.313 60.000 0.00 0.00 35.94 3.01
33 34 1.304134 GGGGTCGGATTTGCCAAGT 60.304 57.895 0.00 0.00 35.94 3.16
34 35 0.611896 AAGGGGTCGGATTTGCCAAG 60.612 55.000 0.00 0.00 35.94 3.61
35 36 0.699399 TAAGGGGTCGGATTTGCCAA 59.301 50.000 0.00 0.00 35.94 4.52
36 37 0.923358 ATAAGGGGTCGGATTTGCCA 59.077 50.000 0.00 0.00 35.94 4.92
37 38 2.067365 AATAAGGGGTCGGATTTGCC 57.933 50.000 0.00 0.00 0.00 4.52
38 39 2.546789 CGTAATAAGGGGTCGGATTTGC 59.453 50.000 0.00 0.00 0.00 3.68
39 40 2.546789 GCGTAATAAGGGGTCGGATTTG 59.453 50.000 0.00 0.00 0.00 2.32
40 41 2.486013 GGCGTAATAAGGGGTCGGATTT 60.486 50.000 0.00 0.00 0.00 2.17
41 42 1.071228 GGCGTAATAAGGGGTCGGATT 59.929 52.381 0.00 0.00 0.00 3.01
42 43 0.683412 GGCGTAATAAGGGGTCGGAT 59.317 55.000 0.00 0.00 0.00 4.18
43 44 1.402107 GGGCGTAATAAGGGGTCGGA 61.402 60.000 0.00 0.00 0.00 4.55
44 45 1.070275 GGGCGTAATAAGGGGTCGG 59.930 63.158 0.00 0.00 0.00 4.79
45 46 0.531311 GTGGGCGTAATAAGGGGTCG 60.531 60.000 0.00 0.00 0.00 4.79
46 47 0.531311 CGTGGGCGTAATAAGGGGTC 60.531 60.000 0.00 0.00 0.00 4.46
47 48 1.523524 CGTGGGCGTAATAAGGGGT 59.476 57.895 0.00 0.00 0.00 4.95
48 49 1.227734 CCGTGGGCGTAATAAGGGG 60.228 63.158 0.00 0.00 36.15 4.79
49 50 0.531311 GTCCGTGGGCGTAATAAGGG 60.531 60.000 0.00 0.00 36.15 3.95
50 51 0.462789 AGTCCGTGGGCGTAATAAGG 59.537 55.000 0.00 0.00 36.15 2.69
51 52 1.849097 GAGTCCGTGGGCGTAATAAG 58.151 55.000 0.00 0.00 36.15 1.73
52 53 0.101040 CGAGTCCGTGGGCGTAATAA 59.899 55.000 0.00 0.00 36.15 1.40
53 54 1.729276 CGAGTCCGTGGGCGTAATA 59.271 57.895 0.00 0.00 36.15 0.98
54 55 2.493030 CGAGTCCGTGGGCGTAAT 59.507 61.111 0.00 0.00 36.15 1.89
55 56 4.424566 GCGAGTCCGTGGGCGTAA 62.425 66.667 0.00 0.00 38.24 3.18
82 83 3.716195 TCTGGATGTGCCCGTGGG 61.716 66.667 0.00 0.00 34.97 4.61
83 84 2.436646 GTCTGGATGTGCCCGTGG 60.437 66.667 0.00 0.00 34.97 4.94
84 85 2.815211 CGTCTGGATGTGCCCGTG 60.815 66.667 0.00 0.00 34.97 4.94
85 86 4.082523 CCGTCTGGATGTGCCCGT 62.083 66.667 0.00 0.00 37.49 5.28
88 89 4.101448 AGGCCGTCTGGATGTGCC 62.101 66.667 0.00 11.63 42.48 5.01
89 90 2.512515 GAGGCCGTCTGGATGTGC 60.513 66.667 0.00 0.00 37.49 4.57
90 91 1.142748 GAGAGGCCGTCTGGATGTG 59.857 63.158 9.16 0.00 34.71 3.21
91 92 0.689080 ATGAGAGGCCGTCTGGATGT 60.689 55.000 9.16 0.00 34.71 3.06
92 93 1.332195 TATGAGAGGCCGTCTGGATG 58.668 55.000 9.16 0.00 34.71 3.51
93 94 2.317371 ATATGAGAGGCCGTCTGGAT 57.683 50.000 9.16 4.66 34.71 3.41
94 95 2.088104 AATATGAGAGGCCGTCTGGA 57.912 50.000 9.16 0.00 34.71 3.86
95 96 2.548920 GGAAATATGAGAGGCCGTCTGG 60.549 54.545 9.16 0.00 34.71 3.86
96 97 2.103094 TGGAAATATGAGAGGCCGTCTG 59.897 50.000 9.16 0.00 34.71 3.51
97 98 2.398588 TGGAAATATGAGAGGCCGTCT 58.601 47.619 9.31 7.02 38.71 4.18
98 99 2.910688 TGGAAATATGAGAGGCCGTC 57.089 50.000 0.00 0.00 0.00 4.79
99 100 2.039084 GGATGGAAATATGAGAGGCCGT 59.961 50.000 0.00 0.00 0.00 5.68
100 101 2.616510 GGGATGGAAATATGAGAGGCCG 60.617 54.545 0.00 0.00 0.00 6.13
101 102 2.616510 CGGGATGGAAATATGAGAGGCC 60.617 54.545 0.00 0.00 0.00 5.19
102 103 2.616510 CCGGGATGGAAATATGAGAGGC 60.617 54.545 0.00 0.00 42.00 4.70
103 104 2.616510 GCCGGGATGGAAATATGAGAGG 60.617 54.545 2.18 0.00 42.00 3.69
104 105 2.038952 TGCCGGGATGGAAATATGAGAG 59.961 50.000 2.18 0.00 42.00 3.20
105 106 2.054021 TGCCGGGATGGAAATATGAGA 58.946 47.619 2.18 0.00 42.00 3.27
106 107 2.566833 TGCCGGGATGGAAATATGAG 57.433 50.000 2.18 0.00 42.00 2.90
107 108 2.290896 GGATGCCGGGATGGAAATATGA 60.291 50.000 15.46 0.00 42.00 2.15
108 109 2.094675 GGATGCCGGGATGGAAATATG 58.905 52.381 15.46 0.00 42.00 1.78
109 110 1.710244 TGGATGCCGGGATGGAAATAT 59.290 47.619 15.46 0.00 42.00 1.28
110 111 1.144691 TGGATGCCGGGATGGAAATA 58.855 50.000 15.46 0.00 42.00 1.40
111 112 0.468029 GTGGATGCCGGGATGGAAAT 60.468 55.000 15.46 0.00 42.00 2.17
112 113 1.077068 GTGGATGCCGGGATGGAAA 60.077 57.895 15.46 0.00 42.00 3.13
113 114 1.644437 ATGTGGATGCCGGGATGGAA 61.644 55.000 15.46 0.00 42.00 3.53
114 115 0.766288 TATGTGGATGCCGGGATGGA 60.766 55.000 15.46 0.00 42.00 3.41
115 116 0.329261 ATATGTGGATGCCGGGATGG 59.671 55.000 15.46 0.00 42.50 3.51
116 117 3.118298 TGATATATGTGGATGCCGGGATG 60.118 47.826 15.46 0.00 0.00 3.51
117 118 3.114606 TGATATATGTGGATGCCGGGAT 58.885 45.455 8.79 8.79 0.00 3.85
118 119 2.545810 TGATATATGTGGATGCCGGGA 58.454 47.619 2.18 0.00 0.00 5.14
119 120 3.348647 TTGATATATGTGGATGCCGGG 57.651 47.619 2.18 0.00 0.00 5.73
120 121 5.065602 CAGATTTGATATATGTGGATGCCGG 59.934 44.000 0.00 0.00 0.00 6.13
121 122 5.876460 TCAGATTTGATATATGTGGATGCCG 59.124 40.000 0.00 0.00 0.00 5.69
122 123 6.883217 AGTCAGATTTGATATATGTGGATGCC 59.117 38.462 0.00 0.00 35.39 4.40
123 124 7.823310 AGAGTCAGATTTGATATATGTGGATGC 59.177 37.037 0.00 0.00 35.39 3.91
124 125 9.368674 GAGAGTCAGATTTGATATATGTGGATG 57.631 37.037 0.00 0.00 35.39 3.51
125 126 9.097946 TGAGAGTCAGATTTGATATATGTGGAT 57.902 33.333 0.00 0.00 35.39 3.41
126 127 8.482852 TGAGAGTCAGATTTGATATATGTGGA 57.517 34.615 0.00 0.00 35.39 4.02
127 128 9.551734 TTTGAGAGTCAGATTTGATATATGTGG 57.448 33.333 0.00 0.00 35.39 4.17
133 134 9.286170 CATGGATTTGAGAGTCAGATTTGATAT 57.714 33.333 0.00 0.00 35.39 1.63
134 135 7.228108 GCATGGATTTGAGAGTCAGATTTGATA 59.772 37.037 0.00 0.00 35.39 2.15
135 136 6.039493 GCATGGATTTGAGAGTCAGATTTGAT 59.961 38.462 0.00 0.00 35.39 2.57
136 137 5.356190 GCATGGATTTGAGAGTCAGATTTGA 59.644 40.000 0.00 0.00 0.00 2.69
137 138 5.124936 TGCATGGATTTGAGAGTCAGATTTG 59.875 40.000 0.00 0.00 0.00 2.32
138 139 5.125097 GTGCATGGATTTGAGAGTCAGATTT 59.875 40.000 0.00 0.00 0.00 2.17
139 140 4.639310 GTGCATGGATTTGAGAGTCAGATT 59.361 41.667 0.00 0.00 0.00 2.40
140 141 4.197750 GTGCATGGATTTGAGAGTCAGAT 58.802 43.478 0.00 0.00 0.00 2.90
141 142 3.603532 GTGCATGGATTTGAGAGTCAGA 58.396 45.455 0.00 0.00 0.00 3.27
142 143 2.350804 CGTGCATGGATTTGAGAGTCAG 59.649 50.000 0.00 0.00 0.00 3.51
143 144 2.289631 ACGTGCATGGATTTGAGAGTCA 60.290 45.455 11.36 0.00 0.00 3.41
144 145 2.350522 ACGTGCATGGATTTGAGAGTC 58.649 47.619 11.36 0.00 0.00 3.36
145 146 2.479566 ACGTGCATGGATTTGAGAGT 57.520 45.000 11.36 0.00 0.00 3.24
146 147 2.743664 TCAACGTGCATGGATTTGAGAG 59.256 45.455 11.36 0.00 0.00 3.20
147 148 2.777094 TCAACGTGCATGGATTTGAGA 58.223 42.857 11.36 0.00 0.00 3.27
148 149 3.127376 TGATCAACGTGCATGGATTTGAG 59.873 43.478 11.36 0.00 30.07 3.02
149 150 3.080319 TGATCAACGTGCATGGATTTGA 58.920 40.909 11.36 14.01 0.00 2.69
150 151 3.490800 TGATCAACGTGCATGGATTTG 57.509 42.857 11.36 6.16 0.00 2.32
151 152 4.639755 TGTATGATCAACGTGCATGGATTT 59.360 37.500 11.36 0.00 0.00 2.17
152 153 4.198530 TGTATGATCAACGTGCATGGATT 58.801 39.130 11.36 0.00 0.00 3.01
153 154 3.807553 TGTATGATCAACGTGCATGGAT 58.192 40.909 11.36 4.08 0.00 3.41
154 155 3.258971 TGTATGATCAACGTGCATGGA 57.741 42.857 11.36 0.00 0.00 3.41
155 156 3.789791 GCTTGTATGATCAACGTGCATGG 60.790 47.826 11.36 0.00 30.88 3.66
156 157 3.064408 AGCTTGTATGATCAACGTGCATG 59.936 43.478 3.82 3.82 30.88 4.06
157 158 3.273434 AGCTTGTATGATCAACGTGCAT 58.727 40.909 0.00 0.00 30.88 3.96
158 159 2.698803 AGCTTGTATGATCAACGTGCA 58.301 42.857 0.00 0.00 0.00 4.57
159 160 4.857871 TTAGCTTGTATGATCAACGTGC 57.142 40.909 0.00 7.93 0.00 5.34
160 161 6.349973 ACATTAGCTTGTATGATCAACGTG 57.650 37.500 0.00 0.00 0.00 4.49
161 162 5.232202 CGACATTAGCTTGTATGATCAACGT 59.768 40.000 0.00 0.00 0.00 3.99
162 163 5.660391 CGACATTAGCTTGTATGATCAACG 58.340 41.667 0.00 0.00 0.00 4.10
163 164 5.006649 TGCGACATTAGCTTGTATGATCAAC 59.993 40.000 0.00 0.12 35.28 3.18
164 165 5.006649 GTGCGACATTAGCTTGTATGATCAA 59.993 40.000 0.00 0.00 35.28 2.57
165 166 4.507756 GTGCGACATTAGCTTGTATGATCA 59.492 41.667 0.00 0.00 35.28 2.92
166 167 4.507756 TGTGCGACATTAGCTTGTATGATC 59.492 41.667 0.00 0.00 35.28 2.92
167 168 4.441792 TGTGCGACATTAGCTTGTATGAT 58.558 39.130 0.00 0.00 35.28 2.45
168 169 3.855858 TGTGCGACATTAGCTTGTATGA 58.144 40.909 0.00 0.00 35.28 2.15
169 170 4.801147 ATGTGCGACATTAGCTTGTATG 57.199 40.909 0.00 0.00 34.67 2.39
170 171 6.918892 TTTATGTGCGACATTAGCTTGTAT 57.081 33.333 0.00 0.00 39.88 2.29
171 172 6.918892 ATTTATGTGCGACATTAGCTTGTA 57.081 33.333 0.00 0.00 39.88 2.41
172 173 5.818136 ATTTATGTGCGACATTAGCTTGT 57.182 34.783 0.00 0.00 39.88 3.16
173 174 5.848036 GCTATTTATGTGCGACATTAGCTTG 59.152 40.000 16.15 0.00 38.47 4.01
174 175 5.527214 TGCTATTTATGTGCGACATTAGCTT 59.473 36.000 20.07 0.00 40.46 3.74
175 176 5.056480 TGCTATTTATGTGCGACATTAGCT 58.944 37.500 20.07 0.00 40.46 3.32
176 177 5.342806 TGCTATTTATGTGCGACATTAGC 57.657 39.130 16.36 16.36 40.34 3.09
177 178 7.857389 ACATTTGCTATTTATGTGCGACATTAG 59.143 33.333 7.02 5.18 39.88 1.73
178 179 7.702386 ACATTTGCTATTTATGTGCGACATTA 58.298 30.769 7.02 0.00 39.88 1.90
179 180 6.563422 ACATTTGCTATTTATGTGCGACATT 58.437 32.000 7.02 0.00 39.88 2.71
180 181 6.135290 ACATTTGCTATTTATGTGCGACAT 57.865 33.333 6.93 6.93 42.35 3.06
181 182 5.559427 ACATTTGCTATTTATGTGCGACA 57.441 34.783 0.00 0.00 31.66 4.35
182 183 6.027131 TCAACATTTGCTATTTATGTGCGAC 58.973 36.000 0.00 0.00 33.10 5.19
183 184 6.188400 TCAACATTTGCTATTTATGTGCGA 57.812 33.333 0.00 0.00 33.10 5.10
184 185 7.149303 CGTATCAACATTTGCTATTTATGTGCG 60.149 37.037 0.00 0.00 33.10 5.34
185 186 7.855409 TCGTATCAACATTTGCTATTTATGTGC 59.145 33.333 0.00 0.00 33.10 4.57
186 187 9.715123 TTCGTATCAACATTTGCTATTTATGTG 57.285 29.630 0.00 0.00 33.10 3.21
192 193 9.454585 CAATGATTCGTATCAACATTTGCTATT 57.545 29.630 8.88 0.00 43.67 1.73
193 194 8.839343 TCAATGATTCGTATCAACATTTGCTAT 58.161 29.630 8.88 0.00 43.67 2.97
194 195 8.207521 TCAATGATTCGTATCAACATTTGCTA 57.792 30.769 8.88 0.00 43.67 3.49
195 196 7.087409 TCAATGATTCGTATCAACATTTGCT 57.913 32.000 8.88 0.00 43.67 3.91
196 197 7.919313 ATCAATGATTCGTATCAACATTTGC 57.081 32.000 8.88 0.00 43.67 3.68
238 239 9.415544 GGTCACGAGTTTAGAGACTTAAAAATA 57.584 33.333 0.00 0.00 31.46 1.40
239 240 7.115947 CGGTCACGAGTTTAGAGACTTAAAAAT 59.884 37.037 0.00 0.00 44.60 1.82
240 241 6.418819 CGGTCACGAGTTTAGAGACTTAAAAA 59.581 38.462 0.00 0.00 44.60 1.94
241 242 5.916883 CGGTCACGAGTTTAGAGACTTAAAA 59.083 40.000 0.00 0.00 44.60 1.52
242 243 5.009010 ACGGTCACGAGTTTAGAGACTTAAA 59.991 40.000 0.00 0.00 44.60 1.52
243 244 4.516698 ACGGTCACGAGTTTAGAGACTTAA 59.483 41.667 0.00 0.00 44.60 1.85
244 245 4.067896 ACGGTCACGAGTTTAGAGACTTA 58.932 43.478 0.00 0.00 44.60 2.24
245 246 2.883386 ACGGTCACGAGTTTAGAGACTT 59.117 45.455 0.00 0.00 44.60 3.01
246 247 2.502295 ACGGTCACGAGTTTAGAGACT 58.498 47.619 0.00 0.00 44.60 3.24
247 248 2.985406 ACGGTCACGAGTTTAGAGAC 57.015 50.000 0.00 0.00 44.60 3.36
248 249 3.402110 TGTACGGTCACGAGTTTAGAGA 58.598 45.455 0.00 0.00 44.60 3.10
249 250 3.818961 TGTACGGTCACGAGTTTAGAG 57.181 47.619 0.00 0.00 44.60 2.43
250 251 4.216042 TCATTGTACGGTCACGAGTTTAGA 59.784 41.667 0.00 0.00 44.60 2.10
251 252 4.322804 GTCATTGTACGGTCACGAGTTTAG 59.677 45.833 0.00 0.00 44.60 1.85
252 253 4.229096 GTCATTGTACGGTCACGAGTTTA 58.771 43.478 0.00 0.00 44.60 2.01
253 254 3.054878 GTCATTGTACGGTCACGAGTTT 58.945 45.455 0.00 0.00 44.60 2.66
254 255 2.608752 GGTCATTGTACGGTCACGAGTT 60.609 50.000 0.00 0.00 44.60 3.01
255 256 1.068055 GGTCATTGTACGGTCACGAGT 60.068 52.381 0.00 0.00 44.60 4.18
256 257 1.625616 GGTCATTGTACGGTCACGAG 58.374 55.000 0.00 0.00 44.60 4.18
257 258 0.109643 CGGTCATTGTACGGTCACGA 60.110 55.000 0.00 0.00 44.60 4.35
259 260 1.680105 CGCGGTCATTGTACGGTCAC 61.680 60.000 0.00 0.00 0.00 3.67
260 261 1.444724 CGCGGTCATTGTACGGTCA 60.445 57.895 0.00 0.00 0.00 4.02
261 262 2.795389 GCGCGGTCATTGTACGGTC 61.795 63.158 8.83 0.00 0.00 4.79
262 263 2.812178 GCGCGGTCATTGTACGGT 60.812 61.111 8.83 0.00 0.00 4.83
263 264 3.908951 CGCGCGGTCATTGTACGG 61.909 66.667 24.84 0.00 0.00 4.02
264 265 2.877113 TCGCGCGGTCATTGTACG 60.877 61.111 31.69 0.00 0.00 3.67
265 266 2.693285 GTCGCGCGGTCATTGTAC 59.307 61.111 31.69 14.40 0.00 2.90
266 267 2.507547 GGTCGCGCGGTCATTGTA 60.508 61.111 31.69 4.34 0.00 2.41
280 281 4.580551 CATACGTCCGGGCGGGTC 62.581 72.222 34.31 4.58 37.00 4.46
282 283 4.280494 CTCATACGTCCGGGCGGG 62.280 72.222 34.31 21.42 35.98 6.13
283 284 3.214123 TCTCATACGTCCGGGCGG 61.214 66.667 34.31 15.69 35.98 6.13
284 285 2.025727 GTCTCATACGTCCGGGCG 59.974 66.667 29.88 29.88 37.94 6.13
285 286 2.025727 CGTCTCATACGTCCGGGC 59.974 66.667 0.00 0.00 46.72 6.13
293 294 2.924290 GCACCTCAAACTCGTCTCATAC 59.076 50.000 0.00 0.00 0.00 2.39
294 295 2.094182 GGCACCTCAAACTCGTCTCATA 60.094 50.000 0.00 0.00 0.00 2.15
295 296 1.338200 GGCACCTCAAACTCGTCTCAT 60.338 52.381 0.00 0.00 0.00 2.90
296 297 0.033504 GGCACCTCAAACTCGTCTCA 59.966 55.000 0.00 0.00 0.00 3.27
297 298 2.828933 GGCACCTCAAACTCGTCTC 58.171 57.895 0.00 0.00 0.00 3.36
311 312 4.840005 GCCTCTACAGCCGGGCAC 62.840 72.222 23.09 0.00 43.59 5.01
313 314 4.228567 GAGCCTCTACAGCCGGGC 62.229 72.222 12.11 12.11 44.38 6.13
314 315 0.755698 TTAGAGCCTCTACAGCCGGG 60.756 60.000 2.18 0.00 0.00 5.73
315 316 1.112113 TTTAGAGCCTCTACAGCCGG 58.888 55.000 0.00 0.00 0.00 6.13
316 317 1.751924 AGTTTAGAGCCTCTACAGCCG 59.248 52.381 0.00 0.00 0.00 5.52
317 318 3.028130 AGAGTTTAGAGCCTCTACAGCC 58.972 50.000 0.00 0.00 36.30 4.85
322 323 9.781633 CTAACATAGTAGAGTTTAGAGCCTCTA 57.218 37.037 0.00 0.00 38.86 2.43
323 324 8.496088 TCTAACATAGTAGAGTTTAGAGCCTCT 58.504 37.037 0.00 0.00 40.94 3.69
324 325 8.680039 TCTAACATAGTAGAGTTTAGAGCCTC 57.320 38.462 0.00 0.00 0.00 4.70
325 326 9.649316 ATTCTAACATAGTAGAGTTTAGAGCCT 57.351 33.333 0.00 0.00 31.80 4.58
326 327 9.685828 CATTCTAACATAGTAGAGTTTAGAGCC 57.314 37.037 0.00 0.00 31.80 4.70
327 328 9.685828 CCATTCTAACATAGTAGAGTTTAGAGC 57.314 37.037 0.00 0.00 31.80 4.09
332 333 9.256228 TCAGTCCATTCTAACATAGTAGAGTTT 57.744 33.333 0.00 0.00 31.80 2.66
333 334 8.824756 TCAGTCCATTCTAACATAGTAGAGTT 57.175 34.615 0.00 0.00 31.80 3.01
334 335 7.013846 GCTCAGTCCATTCTAACATAGTAGAGT 59.986 40.741 0.00 0.00 31.80 3.24
335 336 7.367285 GCTCAGTCCATTCTAACATAGTAGAG 58.633 42.308 0.00 0.00 31.80 2.43
336 337 6.265649 GGCTCAGTCCATTCTAACATAGTAGA 59.734 42.308 0.00 0.00 0.00 2.59
337 338 6.451393 GGCTCAGTCCATTCTAACATAGTAG 58.549 44.000 0.00 0.00 0.00 2.57
338 339 5.304614 GGGCTCAGTCCATTCTAACATAGTA 59.695 44.000 0.00 0.00 0.00 1.82
339 340 4.101741 GGGCTCAGTCCATTCTAACATAGT 59.898 45.833 0.00 0.00 0.00 2.12
340 341 4.101585 TGGGCTCAGTCCATTCTAACATAG 59.898 45.833 0.00 0.00 29.54 2.23
341 342 4.037222 TGGGCTCAGTCCATTCTAACATA 58.963 43.478 0.00 0.00 29.54 2.29
342 343 2.846206 TGGGCTCAGTCCATTCTAACAT 59.154 45.455 0.00 0.00 29.54 2.71
343 344 2.265367 TGGGCTCAGTCCATTCTAACA 58.735 47.619 0.00 0.00 29.54 2.41
344 345 3.350219 TTGGGCTCAGTCCATTCTAAC 57.650 47.619 0.00 0.00 37.08 2.34
345 346 4.380843 TTTTGGGCTCAGTCCATTCTAA 57.619 40.909 0.00 0.00 37.08 2.10
346 347 4.380843 TTTTTGGGCTCAGTCCATTCTA 57.619 40.909 0.00 0.00 37.08 2.10
347 348 2.978156 TTTTGGGCTCAGTCCATTCT 57.022 45.000 0.00 0.00 37.08 2.40
369 370 4.218417 CACCTCAAGATTCGGTTTGGAATT 59.782 41.667 0.00 0.00 36.79 2.17
370 371 3.758554 CACCTCAAGATTCGGTTTGGAAT 59.241 43.478 0.00 0.00 39.27 3.01
371 372 3.146066 CACCTCAAGATTCGGTTTGGAA 58.854 45.455 0.00 0.00 0.00 3.53
419 420 5.498700 CGATACAGTGTACGATTCAGCAAAC 60.499 44.000 4.80 0.00 0.00 2.93
420 421 4.561213 CGATACAGTGTACGATTCAGCAAA 59.439 41.667 4.80 0.00 0.00 3.68
430 431 0.729116 ACGTCCCGATACAGTGTACG 59.271 55.000 4.80 8.77 35.17 3.67
434 435 0.245539 ACCAACGTCCCGATACAGTG 59.754 55.000 0.00 0.00 0.00 3.66
435 436 0.971386 AACCAACGTCCCGATACAGT 59.029 50.000 0.00 0.00 0.00 3.55
436 437 2.088950 AAACCAACGTCCCGATACAG 57.911 50.000 0.00 0.00 0.00 2.74
437 438 2.353605 GGTAAACCAACGTCCCGATACA 60.354 50.000 0.00 0.00 35.64 2.29
438 439 2.270923 GGTAAACCAACGTCCCGATAC 58.729 52.381 0.00 0.00 35.64 2.24
439 440 1.898472 TGGTAAACCAACGTCCCGATA 59.102 47.619 0.00 0.00 44.35 2.92
446 447 1.026584 GGCAACTGGTAAACCAACGT 58.973 50.000 2.97 0.00 46.97 3.99
472 473 2.745308 ATGATACGCAGGCAGGCCA 61.745 57.895 13.63 0.00 38.92 5.36
473 474 2.111878 ATGATACGCAGGCAGGCC 59.888 61.111 0.97 0.97 0.00 5.19
476 477 3.337619 GCCATGATACGCAGGCAG 58.662 61.111 0.00 0.00 46.26 4.85
486 487 1.806623 GCTACTTTCCGACGCCATGAT 60.807 52.381 0.00 0.00 0.00 2.45
487 488 0.459585 GCTACTTTCCGACGCCATGA 60.460 55.000 0.00 0.00 0.00 3.07
625 626 5.406767 GTGTATCCACTACGTAGAGAGTG 57.593 47.826 28.74 18.30 41.90 3.51
668 669 4.696172 CGTTGGTTCGCGCGACAC 62.696 66.667 35.02 29.46 0.00 3.67
720 721 2.034879 AAACATGGCGAGCGGTCAG 61.035 57.895 15.89 8.63 30.81 3.51
750 751 0.692419 AGGCAGTGGTGGGATAGGAG 60.692 60.000 0.00 0.00 0.00 3.69
751 752 0.982852 CAGGCAGTGGTGGGATAGGA 60.983 60.000 0.00 0.00 0.00 2.94
752 753 1.528824 CAGGCAGTGGTGGGATAGG 59.471 63.158 0.00 0.00 0.00 2.57
753 754 1.153086 GCAGGCAGTGGTGGGATAG 60.153 63.158 0.00 0.00 0.00 2.08
754 755 2.998097 GCAGGCAGTGGTGGGATA 59.002 61.111 0.00 0.00 0.00 2.59
755 756 4.415150 CGCAGGCAGTGGTGGGAT 62.415 66.667 0.00 0.00 0.00 3.85
758 759 3.832237 AAGTCGCAGGCAGTGGTGG 62.832 63.158 0.00 0.00 0.00 4.61
759 760 2.281070 AAGTCGCAGGCAGTGGTG 60.281 61.111 0.00 0.00 0.00 4.17
760 761 2.031163 GAAGTCGCAGGCAGTGGT 59.969 61.111 0.00 0.00 0.00 4.16
826 828 4.500545 GGCTGGCATATATAGTGATCGGAG 60.501 50.000 0.00 0.00 0.00 4.63
877 879 4.081917 TGGTTTGTTTGGAACTTTGGACTC 60.082 41.667 0.00 0.00 0.00 3.36
886 895 3.799963 GGATTCGTTGGTTTGTTTGGAAC 59.200 43.478 0.00 0.00 0.00 3.62
887 896 3.702045 AGGATTCGTTGGTTTGTTTGGAA 59.298 39.130 0.00 0.00 0.00 3.53
888 897 3.292460 AGGATTCGTTGGTTTGTTTGGA 58.708 40.909 0.00 0.00 0.00 3.53
889 898 3.726291 AGGATTCGTTGGTTTGTTTGG 57.274 42.857 0.00 0.00 0.00 3.28
936 945 2.154462 CTGGGTGGATTGTTGACTGTC 58.846 52.381 0.00 0.00 0.00 3.51
937 946 1.819305 GCTGGGTGGATTGTTGACTGT 60.819 52.381 0.00 0.00 0.00 3.55
959 968 2.429907 GATCGATCGAGCGCTGGG 60.430 66.667 23.84 6.70 0.00 4.45
1236 1275 2.879462 GCCTGGTACGACGCGAAG 60.879 66.667 15.93 8.81 0.00 3.79
1565 1612 0.322456 CCTCTTCAACCCGGCATTGA 60.322 55.000 13.72 13.72 34.27 2.57
1566 1613 0.609131 ACCTCTTCAACCCGGCATTG 60.609 55.000 9.78 9.78 0.00 2.82
1567 1614 0.609131 CACCTCTTCAACCCGGCATT 60.609 55.000 0.00 0.00 0.00 3.56
1568 1615 1.002134 CACCTCTTCAACCCGGCAT 60.002 57.895 0.00 0.00 0.00 4.40
1569 1616 2.429930 CACCTCTTCAACCCGGCA 59.570 61.111 0.00 0.00 0.00 5.69
1670 1737 0.321653 ATCAAGGGACGGTTGAGCAC 60.322 55.000 0.00 0.00 37.35 4.40
1726 1795 5.236911 ACAACAAATCAACAAATCATGGTGC 59.763 36.000 0.00 0.00 46.85 5.01
1728 1797 6.347696 ACACAACAAATCAACAAATCATGGT 58.652 32.000 0.00 0.00 0.00 3.55
1729 1798 6.847956 ACACAACAAATCAACAAATCATGG 57.152 33.333 0.00 0.00 0.00 3.66
1798 1878 0.037697 TCAGAATCGGTTGACGTGGG 60.038 55.000 0.00 0.00 44.69 4.61
1822 1902 3.673338 CGAGTAACGTGAATGTGTGATGT 59.327 43.478 0.00 0.00 37.22 3.06
1828 1908 2.942710 AGGTCGAGTAACGTGAATGTG 58.057 47.619 0.00 0.00 43.13 3.21
1837 1917 5.008415 TCTCATCCGATTTAGGTCGAGTAAC 59.992 44.000 0.00 0.00 44.06 2.50
1862 2035 2.433145 CGGCAGCGAAGAAGAGCA 60.433 61.111 0.00 0.00 35.48 4.26
1864 2037 0.868406 AAAACGGCAGCGAAGAAGAG 59.132 50.000 0.00 0.00 0.00 2.85
1874 2047 3.301835 CGATCGATGTAAGAAAACGGCAG 60.302 47.826 10.26 0.00 0.00 4.85
1878 2051 2.278094 ACGCGATCGATGTAAGAAAACG 59.722 45.455 21.57 10.45 39.41 3.60
1879 2052 3.301643 GGACGCGATCGATGTAAGAAAAC 60.302 47.826 21.57 2.46 39.41 2.43
1880 2053 2.855963 GGACGCGATCGATGTAAGAAAA 59.144 45.455 21.57 0.00 39.41 2.29
1884 2057 2.963498 TAGGACGCGATCGATGTAAG 57.037 50.000 21.57 4.53 39.41 2.34
1885 2058 2.287188 GGTTAGGACGCGATCGATGTAA 60.287 50.000 21.57 5.00 39.41 2.41
1886 2059 1.265095 GGTTAGGACGCGATCGATGTA 59.735 52.381 21.57 0.00 39.41 2.29
1888 2061 0.997226 CGGTTAGGACGCGATCGATG 60.997 60.000 21.57 12.89 39.41 3.84
1889 2062 1.162181 TCGGTTAGGACGCGATCGAT 61.162 55.000 21.57 5.51 39.41 3.59
1890 2063 1.815003 TCGGTTAGGACGCGATCGA 60.815 57.895 21.57 4.07 39.41 3.59
1891 2064 1.653533 GTCGGTTAGGACGCGATCG 60.654 63.158 15.93 11.69 42.43 3.69
1892 2065 0.100146 AAGTCGGTTAGGACGCGATC 59.900 55.000 15.93 6.63 41.81 3.69
1893 2066 0.179145 CAAGTCGGTTAGGACGCGAT 60.179 55.000 15.93 0.00 41.81 4.58
1894 2067 1.210931 CAAGTCGGTTAGGACGCGA 59.789 57.895 15.93 0.00 41.81 5.87
1895 2068 0.387622 TTCAAGTCGGTTAGGACGCG 60.388 55.000 3.53 3.53 41.81 6.01
1896 2069 1.787012 TTTCAAGTCGGTTAGGACGC 58.213 50.000 0.00 0.00 41.81 5.19
1897 2070 2.597305 CGATTTCAAGTCGGTTAGGACG 59.403 50.000 0.00 0.00 41.81 4.79
1898 2071 3.611549 GTCGATTTCAAGTCGGTTAGGAC 59.388 47.826 2.11 0.00 39.45 3.85
1899 2072 3.367703 GGTCGATTTCAAGTCGGTTAGGA 60.368 47.826 2.11 0.00 39.45 2.94
1900 2073 2.928116 GGTCGATTTCAAGTCGGTTAGG 59.072 50.000 2.11 0.00 39.45 2.69
1901 2074 3.846360 AGGTCGATTTCAAGTCGGTTAG 58.154 45.455 2.11 0.00 39.45 2.34
1943 2160 3.207044 AGTAGAGGGGAACATCCAGTT 57.793 47.619 0.00 0.00 43.69 3.16
1962 2179 3.065371 GTGGCGGGAGATTGATTTACAAG 59.935 47.826 0.00 0.00 42.02 3.16
1963 2180 3.013921 GTGGCGGGAGATTGATTTACAA 58.986 45.455 0.00 0.00 42.95 2.41
1964 2181 2.639065 GTGGCGGGAGATTGATTTACA 58.361 47.619 0.00 0.00 0.00 2.41
1965 2182 1.947456 GGTGGCGGGAGATTGATTTAC 59.053 52.381 0.00 0.00 0.00 2.01
1972 2189 2.670148 GGTCTGGTGGCGGGAGATT 61.670 63.158 0.00 0.00 0.00 2.40
1979 2196 3.041940 GACGTTGGTCTGGTGGCG 61.042 66.667 0.00 0.00 40.15 5.69
1997 2214 6.765915 AATAGAAAGGTTGGATTCTGAAGC 57.234 37.500 0.00 0.00 36.59 3.86
2011 2228 3.578716 TCCTGATCGGCCTAATAGAAAGG 59.421 47.826 0.00 2.47 37.17 3.11
2015 2232 4.019858 CTGATCCTGATCGGCCTAATAGA 58.980 47.826 0.00 0.00 40.63 1.98
2165 2383 8.535690 TGTGTATCAATGTTTTGTATCGTGTA 57.464 30.769 0.00 0.00 34.32 2.90
2279 2499 9.811995 GACTTACTTGGGTTAAAAGTTGAAATT 57.188 29.630 0.00 0.00 38.73 1.82
2280 2500 9.197306 AGACTTACTTGGGTTAAAAGTTGAAAT 57.803 29.630 0.00 0.00 38.73 2.17
2483 2703 8.768397 TCTCCACTGAAATTCTTAATAAGGCTA 58.232 33.333 0.00 0.00 0.00 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.