Multiple sequence alignment - TraesCS7A01G160200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G160200 chr7A 100.000 2627 0 0 1 2627 116125807 116123181 0.000000e+00 4852.0
1 TraesCS7A01G160200 chr7A 86.667 60 8 0 394 453 620425739 620425680 1.690000e-07 67.6
2 TraesCS7A01G160200 chr7B 84.232 1725 146 62 299 1948 70521865 70520192 0.000000e+00 1563.0
3 TraesCS7A01G160200 chr7B 94.000 150 9 0 2230 2379 70519827 70519678 7.310000e-56 228.0
4 TraesCS7A01G160200 chr7B 76.230 244 52 5 300 541 678734535 678734296 9.870000e-25 124.0
5 TraesCS7A01G160200 chr7D 85.279 1345 95 51 594 1873 111059731 111058425 0.000000e+00 1291.0
6 TraesCS7A01G160200 chr7D 83.568 213 15 8 1980 2190 111058262 111058068 5.780000e-42 182.0
7 TraesCS7A01G160200 chr7D 98.876 89 1 0 2232 2320 111057953 111057865 2.710000e-35 159.0
8 TraesCS7A01G160200 chr7D 79.279 222 40 5 300 520 580565351 580565567 1.630000e-32 150.0
9 TraesCS7A01G160200 chr7D 95.238 84 4 0 1905 1988 111058363 111058280 1.640000e-27 134.0
10 TraesCS7A01G160200 chr3D 95.339 236 11 0 2392 2627 248906786 248907021 2.470000e-100 375.0
11 TraesCS7A01G160200 chr3D 95.319 235 11 0 2393 2627 7429105 7428871 8.880000e-100 374.0
12 TraesCS7A01G160200 chr3D 94.958 238 12 0 2390 2627 273267477 273267240 8.880000e-100 374.0
13 TraesCS7A01G160200 chr3D 94.958 238 12 0 2390 2627 507868669 507868432 8.880000e-100 374.0
14 TraesCS7A01G160200 chr3D 81.132 106 18 2 300 404 584125912 584125808 1.680000e-12 84.2
15 TraesCS7A01G160200 chr2D 94.958 238 12 0 2390 2627 122258823 122258586 8.880000e-100 374.0
16 TraesCS7A01G160200 chr2D 79.856 139 27 1 303 441 556938442 556938305 1.660000e-17 100.0
17 TraesCS7A01G160200 chr2A 94.915 236 12 0 2392 2627 729829870 729830105 1.150000e-98 370.0
18 TraesCS7A01G160200 chr2A 81.366 161 27 3 300 458 706508488 706508329 7.630000e-26 128.0
19 TraesCS7A01G160200 chr2A 100.000 30 0 0 1081 1110 22478939 22478910 3.650000e-04 56.5
20 TraesCS7A01G160200 chr6D 94.538 238 13 0 2390 2627 153351762 153351999 4.130000e-98 368.0
21 TraesCS7A01G160200 chr1D 94.538 238 13 0 2390 2627 267864411 267864174 4.130000e-98 368.0
22 TraesCS7A01G160200 chr1B 92.188 256 18 2 2373 2627 672032582 672032328 6.910000e-96 361.0
23 TraesCS7A01G160200 chr5A 76.364 220 34 10 235 448 107457709 107457916 4.630000e-18 102.0
24 TraesCS7A01G160200 chr6A 73.154 298 64 11 255 540 23225685 23225392 2.780000e-15 93.5
25 TraesCS7A01G160200 chr1A 80.612 98 16 3 300 396 458985628 458985723 3.630000e-09 73.1
26 TraesCS7A01G160200 chr3A 100.000 30 0 0 1081 1110 59864082 59864111 3.650000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G160200 chr7A 116123181 116125807 2626 True 4852.0 4852 100.00000 1 2627 1 chr7A.!!$R1 2626
1 TraesCS7A01G160200 chr7B 70519678 70521865 2187 True 895.5 1563 89.11600 299 2379 2 chr7B.!!$R2 2080
2 TraesCS7A01G160200 chr7D 111057865 111059731 1866 True 441.5 1291 90.74025 594 2320 4 chr7D.!!$R1 1726

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 275 0.031585 GACGCTCATACATACGCCCA 59.968 55.0 0.0 0.0 0.0 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1931 0.167908 GTGTTGGAAATCGCATCGCA 59.832 50.0 0.0 0.0 0.0 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.501610 GGACGATCCCTGACTGGC 59.498 66.667 0.00 0.00 0.00 4.85
20 21 2.105128 GACGATCCCTGACTGGCG 59.895 66.667 0.00 0.00 0.00 5.69
21 22 2.680352 ACGATCCCTGACTGGCGT 60.680 61.111 0.00 0.00 0.00 5.68
22 23 2.202797 CGATCCCTGACTGGCGTG 60.203 66.667 0.00 0.00 0.00 5.34
23 24 2.982130 GATCCCTGACTGGCGTGT 59.018 61.111 0.00 0.00 0.00 4.49
24 25 1.153549 GATCCCTGACTGGCGTGTC 60.154 63.158 3.89 3.89 37.47 3.67
25 26 1.888436 GATCCCTGACTGGCGTGTCA 61.888 60.000 11.61 11.61 43.72 3.58
26 27 2.172483 ATCCCTGACTGGCGTGTCAC 62.172 60.000 8.71 0.00 41.43 3.67
27 28 2.421314 CCTGACTGGCGTGTCACA 59.579 61.111 8.71 0.00 41.43 3.58
28 29 1.227527 CCTGACTGGCGTGTCACAA 60.228 57.895 8.71 0.00 41.43 3.33
29 30 0.813610 CCTGACTGGCGTGTCACAAA 60.814 55.000 8.71 0.00 41.43 2.83
30 31 0.583438 CTGACTGGCGTGTCACAAAG 59.417 55.000 8.71 0.00 41.43 2.77
31 32 0.176910 TGACTGGCGTGTCACAAAGA 59.823 50.000 8.71 0.00 41.43 2.52
42 43 2.960819 GTCACAAAGACTCGGCTATGT 58.039 47.619 0.00 0.00 44.09 2.29
43 44 2.924290 GTCACAAAGACTCGGCTATGTC 59.076 50.000 0.00 0.00 44.09 3.06
44 45 1.920574 CACAAAGACTCGGCTATGTCG 59.079 52.381 0.00 0.00 38.16 4.35
45 46 0.924090 CAAAGACTCGGCTATGTCGC 59.076 55.000 0.00 0.00 38.16 5.19
46 47 0.525668 AAAGACTCGGCTATGTCGCG 60.526 55.000 0.00 0.00 38.16 5.87
47 48 1.654954 AAGACTCGGCTATGTCGCGT 61.655 55.000 5.77 0.00 38.16 6.01
48 49 1.939785 GACTCGGCTATGTCGCGTG 60.940 63.158 5.77 0.00 25.98 5.34
49 50 3.323136 CTCGGCTATGTCGCGTGC 61.323 66.667 5.77 0.57 0.00 5.34
50 51 4.123009 TCGGCTATGTCGCGTGCA 62.123 61.111 5.77 7.35 0.00 4.57
51 52 3.185365 CGGCTATGTCGCGTGCAA 61.185 61.111 5.77 0.00 0.00 4.08
52 53 2.399611 GGCTATGTCGCGTGCAAC 59.600 61.111 5.77 0.00 0.00 4.17
53 54 2.387445 GGCTATGTCGCGTGCAACA 61.387 57.895 5.77 2.79 35.74 3.33
54 55 1.495509 GCTATGTCGCGTGCAACAA 59.504 52.632 5.77 0.00 35.74 2.83
55 56 0.519175 GCTATGTCGCGTGCAACAAG 60.519 55.000 5.77 7.54 35.74 3.16
56 57 0.790207 CTATGTCGCGTGCAACAAGT 59.210 50.000 5.77 0.00 35.74 3.16
57 58 0.787787 TATGTCGCGTGCAACAAGTC 59.212 50.000 5.77 0.00 35.74 3.01
58 59 2.128128 GTCGCGTGCAACAAGTCG 60.128 61.111 5.77 0.00 35.74 4.18
59 60 2.583868 TCGCGTGCAACAAGTCGT 60.584 55.556 5.77 0.00 35.74 4.34
60 61 2.168503 TCGCGTGCAACAAGTCGTT 61.169 52.632 5.77 0.00 38.83 3.85
61 62 1.297304 CGCGTGCAACAAGTCGTTT 60.297 52.632 0.00 0.00 34.86 3.60
62 63 0.042880 CGCGTGCAACAAGTCGTTTA 60.043 50.000 0.00 0.00 34.86 2.01
63 64 1.592590 CGCGTGCAACAAGTCGTTTAA 60.593 47.619 0.00 0.00 34.86 1.52
64 65 1.771291 GCGTGCAACAAGTCGTTTAAC 59.229 47.619 0.00 0.00 34.86 2.01
65 66 2.368685 CGTGCAACAAGTCGTTTAACC 58.631 47.619 0.00 0.00 34.86 2.85
66 67 2.223066 CGTGCAACAAGTCGTTTAACCA 60.223 45.455 0.00 0.00 34.86 3.67
67 68 3.359654 GTGCAACAAGTCGTTTAACCAG 58.640 45.455 0.00 0.00 34.86 4.00
68 69 2.223386 TGCAACAAGTCGTTTAACCAGC 60.223 45.455 0.00 0.00 34.86 4.85
69 70 2.032924 GCAACAAGTCGTTTAACCAGCT 59.967 45.455 0.00 0.00 34.86 4.24
70 71 3.848554 GCAACAAGTCGTTTAACCAGCTC 60.849 47.826 0.00 0.00 34.86 4.09
71 72 3.188159 ACAAGTCGTTTAACCAGCTCA 57.812 42.857 0.00 0.00 0.00 4.26
72 73 3.537580 ACAAGTCGTTTAACCAGCTCAA 58.462 40.909 0.00 0.00 0.00 3.02
73 74 4.134563 ACAAGTCGTTTAACCAGCTCAAT 58.865 39.130 0.00 0.00 0.00 2.57
74 75 5.302360 ACAAGTCGTTTAACCAGCTCAATA 58.698 37.500 0.00 0.00 0.00 1.90
75 76 5.408604 ACAAGTCGTTTAACCAGCTCAATAG 59.591 40.000 0.00 0.00 0.00 1.73
76 77 4.504858 AGTCGTTTAACCAGCTCAATAGG 58.495 43.478 0.00 0.00 0.00 2.57
77 78 4.020485 AGTCGTTTAACCAGCTCAATAGGT 60.020 41.667 0.00 0.00 37.20 3.08
78 79 5.186409 AGTCGTTTAACCAGCTCAATAGGTA 59.814 40.000 0.00 0.00 34.63 3.08
79 80 5.519206 GTCGTTTAACCAGCTCAATAGGTAG 59.481 44.000 0.00 0.00 34.63 3.18
80 81 4.270325 CGTTTAACCAGCTCAATAGGTAGC 59.730 45.833 0.00 0.00 39.08 3.58
81 82 5.183228 GTTTAACCAGCTCAATAGGTAGCA 58.817 41.667 0.00 0.00 41.32 3.49
82 83 5.630415 TTAACCAGCTCAATAGGTAGCAT 57.370 39.130 0.00 0.00 41.32 3.79
83 84 6.740944 TTAACCAGCTCAATAGGTAGCATA 57.259 37.500 0.00 0.00 41.32 3.14
84 85 4.608948 ACCAGCTCAATAGGTAGCATAC 57.391 45.455 0.00 0.00 41.32 2.39
100 101 2.983229 CATACCTTGCAACAGAGCTCT 58.017 47.619 11.45 11.45 34.99 4.09
101 102 3.341823 CATACCTTGCAACAGAGCTCTT 58.658 45.455 15.27 2.83 34.99 2.85
102 103 2.355010 ACCTTGCAACAGAGCTCTTT 57.645 45.000 15.27 4.62 34.99 2.52
103 104 2.225467 ACCTTGCAACAGAGCTCTTTC 58.775 47.619 15.27 3.95 34.99 2.62
104 105 1.196354 CCTTGCAACAGAGCTCTTTCG 59.804 52.381 15.27 5.67 34.99 3.46
105 106 1.196354 CTTGCAACAGAGCTCTTTCGG 59.804 52.381 15.27 5.25 34.99 4.30
106 107 0.106708 TGCAACAGAGCTCTTTCGGT 59.893 50.000 15.27 6.00 34.99 4.69
107 108 0.514691 GCAACAGAGCTCTTTCGGTG 59.485 55.000 15.27 13.41 0.00 4.94
108 109 1.871080 CAACAGAGCTCTTTCGGTGT 58.129 50.000 15.27 5.79 0.00 4.16
109 110 1.528586 CAACAGAGCTCTTTCGGTGTG 59.471 52.381 15.27 3.41 0.00 3.82
110 111 0.034059 ACAGAGCTCTTTCGGTGTGG 59.966 55.000 15.27 1.54 30.86 4.17
111 112 1.004440 AGAGCTCTTTCGGTGTGGC 60.004 57.895 11.45 0.00 0.00 5.01
112 113 2.357517 AGCTCTTTCGGTGTGGCG 60.358 61.111 0.00 0.00 0.00 5.69
113 114 3.423154 GCTCTTTCGGTGTGGCGG 61.423 66.667 0.00 0.00 0.00 6.13
114 115 2.030562 CTCTTTCGGTGTGGCGGT 59.969 61.111 0.00 0.00 0.00 5.68
115 116 1.597027 CTCTTTCGGTGTGGCGGTT 60.597 57.895 0.00 0.00 0.00 4.44
116 117 1.841663 CTCTTTCGGTGTGGCGGTTG 61.842 60.000 0.00 0.00 0.00 3.77
117 118 3.536498 CTTTCGGTGTGGCGGTTGC 62.536 63.158 0.00 0.00 41.71 4.17
118 119 4.555709 TTCGGTGTGGCGGTTGCT 62.556 61.111 0.00 0.00 42.25 3.91
119 120 4.980805 TCGGTGTGGCGGTTGCTC 62.981 66.667 0.00 0.00 42.25 4.26
132 133 4.742201 TGCTCGCGCACCTTCTCC 62.742 66.667 8.75 0.00 42.25 3.71
134 135 4.116328 CTCGCGCACCTTCTCCGA 62.116 66.667 8.75 0.00 0.00 4.55
135 136 3.417275 CTCGCGCACCTTCTCCGAT 62.417 63.158 8.75 0.00 0.00 4.18
136 137 3.257561 CGCGCACCTTCTCCGATG 61.258 66.667 8.75 0.00 0.00 3.84
137 138 2.892425 GCGCACCTTCTCCGATGG 60.892 66.667 0.30 0.00 33.73 3.51
138 139 2.579201 CGCACCTTCTCCGATGGT 59.421 61.111 0.00 0.00 40.09 3.55
140 141 4.208632 CACCTTCTCCGATGGTGC 57.791 61.111 13.69 0.00 45.90 5.01
141 142 1.296392 CACCTTCTCCGATGGTGCA 59.704 57.895 13.69 0.00 45.90 4.57
142 143 1.021390 CACCTTCTCCGATGGTGCAC 61.021 60.000 8.80 8.80 45.90 4.57
143 144 1.296392 CCTTCTCCGATGGTGCACA 59.704 57.895 20.43 5.24 0.00 4.57
144 145 0.107508 CCTTCTCCGATGGTGCACAT 60.108 55.000 20.43 10.28 44.18 3.21
150 151 3.576356 GATGGTGCACATCGGCGG 61.576 66.667 20.43 0.00 45.87 6.13
177 178 3.032017 CCAATGATGGGCGACTAGTAG 57.968 52.381 0.00 0.00 43.51 2.57
178 179 2.289072 CCAATGATGGGCGACTAGTAGG 60.289 54.545 5.08 0.00 43.51 3.18
179 180 2.365617 CAATGATGGGCGACTAGTAGGT 59.634 50.000 5.08 0.00 0.00 3.08
180 181 2.154567 TGATGGGCGACTAGTAGGTT 57.845 50.000 5.08 0.00 0.00 3.50
181 182 2.463752 TGATGGGCGACTAGTAGGTTT 58.536 47.619 5.08 0.00 0.00 3.27
182 183 2.167693 TGATGGGCGACTAGTAGGTTTG 59.832 50.000 5.08 0.00 0.00 2.93
183 184 0.899720 TGGGCGACTAGTAGGTTTGG 59.100 55.000 5.08 0.00 0.00 3.28
184 185 0.177373 GGGCGACTAGTAGGTTTGGG 59.823 60.000 5.08 0.00 0.00 4.12
185 186 0.461516 GGCGACTAGTAGGTTTGGGC 60.462 60.000 5.08 0.00 0.00 5.36
186 187 0.248289 GCGACTAGTAGGTTTGGGCA 59.752 55.000 5.08 0.00 0.00 5.36
187 188 2.005560 GCGACTAGTAGGTTTGGGCAC 61.006 57.143 5.08 0.00 0.00 5.01
188 189 1.274167 CGACTAGTAGGTTTGGGCACA 59.726 52.381 0.00 0.00 0.00 4.57
189 190 2.674177 CGACTAGTAGGTTTGGGCACAG 60.674 54.545 0.00 0.00 0.00 3.66
190 191 1.628846 ACTAGTAGGTTTGGGCACAGG 59.371 52.381 1.45 0.00 0.00 4.00
191 192 0.988832 TAGTAGGTTTGGGCACAGGG 59.011 55.000 0.00 0.00 0.00 4.45
192 193 0.770557 AGTAGGTTTGGGCACAGGGA 60.771 55.000 0.00 0.00 0.00 4.20
193 194 0.608308 GTAGGTTTGGGCACAGGGAC 60.608 60.000 0.00 0.00 0.00 4.46
200 201 3.775654 GGCACAGGGACCTCCGAG 61.776 72.222 0.00 0.00 41.52 4.63
201 202 3.775654 GCACAGGGACCTCCGAGG 61.776 72.222 13.31 13.31 42.49 4.63
213 214 2.962882 TCCGAGGTCTCTTGGAGTG 58.037 57.895 0.00 0.00 46.14 3.51
214 215 0.404426 TCCGAGGTCTCTTGGAGTGA 59.596 55.000 0.00 0.00 46.14 3.41
215 216 0.528470 CCGAGGTCTCTTGGAGTGAC 59.472 60.000 2.44 2.44 45.61 3.67
219 220 2.352817 GTCTCTTGGAGTGACCCGT 58.647 57.895 0.01 0.00 33.83 5.28
220 221 0.038159 GTCTCTTGGAGTGACCCGTG 60.038 60.000 0.01 0.00 33.83 4.94
221 222 0.469331 TCTCTTGGAGTGACCCGTGT 60.469 55.000 0.00 0.00 38.00 4.49
222 223 1.202964 TCTCTTGGAGTGACCCGTGTA 60.203 52.381 0.00 0.00 38.00 2.90
223 224 0.963962 TCTTGGAGTGACCCGTGTAC 59.036 55.000 0.00 0.00 38.00 2.90
224 225 0.677288 CTTGGAGTGACCCGTGTACA 59.323 55.000 0.00 0.00 38.00 2.90
225 226 0.390124 TTGGAGTGACCCGTGTACAC 59.610 55.000 16.32 16.32 38.00 2.90
226 227 0.756070 TGGAGTGACCCGTGTACACA 60.756 55.000 24.98 2.80 37.05 3.72
227 228 0.390124 GGAGTGACCCGTGTACACAA 59.610 55.000 24.98 2.82 37.05 3.33
228 229 1.001633 GGAGTGACCCGTGTACACAAT 59.998 52.381 24.98 9.89 37.05 2.71
229 230 2.066262 GAGTGACCCGTGTACACAATG 58.934 52.381 24.98 14.48 37.05 2.82
230 231 1.414919 AGTGACCCGTGTACACAATGT 59.585 47.619 24.98 17.39 37.05 2.71
231 232 2.629137 AGTGACCCGTGTACACAATGTA 59.371 45.455 24.98 6.03 37.05 2.29
232 233 3.069872 AGTGACCCGTGTACACAATGTAA 59.930 43.478 24.98 9.29 34.21 2.41
233 234 3.998341 GTGACCCGTGTACACAATGTAAT 59.002 43.478 24.98 3.47 34.21 1.89
234 235 4.453136 GTGACCCGTGTACACAATGTAATT 59.547 41.667 24.98 0.66 34.21 1.40
235 236 5.049267 GTGACCCGTGTACACAATGTAATTT 60.049 40.000 24.98 0.00 34.21 1.82
236 237 5.049336 TGACCCGTGTACACAATGTAATTTG 60.049 40.000 24.98 5.16 34.21 2.32
237 238 4.822896 ACCCGTGTACACAATGTAATTTGT 59.177 37.500 24.98 4.38 40.39 2.83
238 239 5.299782 ACCCGTGTACACAATGTAATTTGTT 59.700 36.000 24.98 0.00 37.73 2.83
239 240 6.183360 ACCCGTGTACACAATGTAATTTGTTT 60.183 34.615 24.98 0.00 37.73 2.83
240 241 6.143118 CCCGTGTACACAATGTAATTTGTTTG 59.857 38.462 24.98 3.43 37.73 2.93
241 242 6.693545 CCGTGTACACAATGTAATTTGTTTGT 59.306 34.615 24.98 0.00 37.73 2.83
242 243 7.221067 CCGTGTACACAATGTAATTTGTTTGTT 59.779 33.333 24.98 0.00 37.73 2.83
243 244 8.587950 CGTGTACACAATGTAATTTGTTTGTTT 58.412 29.630 24.98 0.00 37.73 2.83
258 259 8.829514 TTTGTTTGTTTTAACACATAGAGACG 57.170 30.769 0.00 0.00 38.92 4.18
259 260 6.423862 TGTTTGTTTTAACACATAGAGACGC 58.576 36.000 0.00 0.00 38.92 5.19
260 261 6.259167 TGTTTGTTTTAACACATAGAGACGCT 59.741 34.615 0.00 0.00 38.92 5.07
261 262 6.462073 TTGTTTTAACACATAGAGACGCTC 57.538 37.500 0.00 0.00 38.92 5.03
262 263 5.534407 TGTTTTAACACATAGAGACGCTCA 58.466 37.500 9.09 0.00 33.17 4.26
263 264 6.163476 TGTTTTAACACATAGAGACGCTCAT 58.837 36.000 9.09 0.00 33.17 2.90
264 265 7.317390 TGTTTTAACACATAGAGACGCTCATA 58.683 34.615 9.09 1.01 33.17 2.15
265 266 7.274904 TGTTTTAACACATAGAGACGCTCATAC 59.725 37.037 9.09 0.00 33.17 2.39
266 267 4.983671 AACACATAGAGACGCTCATACA 57.016 40.909 9.09 0.00 32.06 2.29
267 268 5.521906 AACACATAGAGACGCTCATACAT 57.478 39.130 9.09 0.00 32.06 2.29
268 269 6.635030 AACACATAGAGACGCTCATACATA 57.365 37.500 9.09 0.00 32.06 2.29
269 270 6.003234 ACACATAGAGACGCTCATACATAC 57.997 41.667 9.09 0.00 32.06 2.39
270 271 5.082723 CACATAGAGACGCTCATACATACG 58.917 45.833 9.09 0.00 32.06 3.06
271 272 2.690173 AGAGACGCTCATACATACGC 57.310 50.000 9.09 0.00 32.06 4.42
272 273 1.267261 AGAGACGCTCATACATACGCC 59.733 52.381 9.09 0.00 32.06 5.68
273 274 0.314302 AGACGCTCATACATACGCCC 59.686 55.000 0.00 0.00 0.00 6.13
274 275 0.031585 GACGCTCATACATACGCCCA 59.968 55.000 0.00 0.00 0.00 5.36
275 276 0.679505 ACGCTCATACATACGCCCAT 59.320 50.000 0.00 0.00 0.00 4.00
276 277 1.070134 ACGCTCATACATACGCCCATT 59.930 47.619 0.00 0.00 0.00 3.16
277 278 2.297880 ACGCTCATACATACGCCCATTA 59.702 45.455 0.00 0.00 0.00 1.90
278 279 3.243941 ACGCTCATACATACGCCCATTAA 60.244 43.478 0.00 0.00 0.00 1.40
279 280 3.122948 CGCTCATACATACGCCCATTAAC 59.877 47.826 0.00 0.00 0.00 2.01
280 281 3.435671 GCTCATACATACGCCCATTAACC 59.564 47.826 0.00 0.00 0.00 2.85
281 282 4.000988 CTCATACATACGCCCATTAACCC 58.999 47.826 0.00 0.00 0.00 4.11
282 283 3.649023 TCATACATACGCCCATTAACCCT 59.351 43.478 0.00 0.00 0.00 4.34
283 284 4.103469 TCATACATACGCCCATTAACCCTT 59.897 41.667 0.00 0.00 0.00 3.95
284 285 2.927028 ACATACGCCCATTAACCCTTC 58.073 47.619 0.00 0.00 0.00 3.46
285 286 2.508300 ACATACGCCCATTAACCCTTCT 59.492 45.455 0.00 0.00 0.00 2.85
286 287 2.702592 TACGCCCATTAACCCTTCTG 57.297 50.000 0.00 0.00 0.00 3.02
287 288 0.988832 ACGCCCATTAACCCTTCTGA 59.011 50.000 0.00 0.00 0.00 3.27
288 289 1.065418 ACGCCCATTAACCCTTCTGAG 60.065 52.381 0.00 0.00 0.00 3.35
289 290 1.393603 GCCCATTAACCCTTCTGAGC 58.606 55.000 0.00 0.00 0.00 4.26
290 291 1.668419 CCCATTAACCCTTCTGAGCG 58.332 55.000 0.00 0.00 0.00 5.03
291 292 1.017387 CCATTAACCCTTCTGAGCGC 58.983 55.000 0.00 0.00 0.00 5.92
292 293 1.678728 CCATTAACCCTTCTGAGCGCA 60.679 52.381 11.47 0.00 0.00 6.09
293 294 1.398390 CATTAACCCTTCTGAGCGCAC 59.602 52.381 11.47 3.13 0.00 5.34
294 295 0.394938 TTAACCCTTCTGAGCGCACA 59.605 50.000 11.47 9.28 0.00 4.57
295 296 0.613260 TAACCCTTCTGAGCGCACAT 59.387 50.000 11.47 0.00 0.00 3.21
296 297 0.957395 AACCCTTCTGAGCGCACATG 60.957 55.000 11.47 3.99 0.00 3.21
297 298 1.376424 CCCTTCTGAGCGCACATGT 60.376 57.895 11.47 0.00 0.00 3.21
304 305 0.948623 TGAGCGCACATGTACACACC 60.949 55.000 11.47 0.00 0.00 4.16
308 309 1.355971 CGCACATGTACACACCCTAC 58.644 55.000 0.00 0.00 0.00 3.18
312 313 1.203389 ACATGTACACACCCTACCCCT 60.203 52.381 0.00 0.00 0.00 4.79
318 319 1.649633 ACACACCCTACCCCTATGAGA 59.350 52.381 0.00 0.00 0.00 3.27
323 324 3.116862 CACCCTACCCCTATGAGAACCTA 60.117 52.174 0.00 0.00 0.00 3.08
331 332 3.816523 CCCTATGAGAACCTACGAGAGAC 59.183 52.174 0.00 0.00 0.00 3.36
332 333 4.445162 CCCTATGAGAACCTACGAGAGACT 60.445 50.000 0.00 0.00 0.00 3.24
338 339 2.803030 ACCTACGAGAGACTAAGCCA 57.197 50.000 0.00 0.00 0.00 4.75
339 340 3.083122 ACCTACGAGAGACTAAGCCAA 57.917 47.619 0.00 0.00 0.00 4.52
351 352 6.155221 AGAGACTAAGCCAACACATCATCTTA 59.845 38.462 0.00 0.00 0.00 2.10
357 358 7.472334 AAGCCAACACATCATCTTAAGATTT 57.528 32.000 15.49 3.78 31.21 2.17
359 360 7.989826 AGCCAACACATCATCTTAAGATTTAC 58.010 34.615 15.49 3.13 31.21 2.01
367 368 9.823647 ACATCATCTTAAGATTTACGAAGTCAT 57.176 29.630 15.49 0.00 35.39 3.06
379 380 2.288273 ACGAAGTCATTATAGGCGCCTC 60.288 50.000 36.73 17.40 29.74 4.70
383 384 1.542915 GTCATTATAGGCGCCTCCGTA 59.457 52.381 36.73 21.41 40.77 4.02
404 405 0.032952 CCAACCGAAACGTCTCCTCA 59.967 55.000 0.00 0.00 0.00 3.86
407 408 0.748450 ACCGAAACGTCTCCTCACAA 59.252 50.000 0.00 0.00 0.00 3.33
414 415 1.336887 ACGTCTCCTCACAATGAACGG 60.337 52.381 5.93 0.00 0.00 4.44
435 436 1.533625 CATCACCGGAAAGCCTGAAA 58.466 50.000 9.46 0.00 0.00 2.69
441 442 4.770010 TCACCGGAAAGCCTGAAATAAATT 59.230 37.500 9.46 0.00 0.00 1.82
455 456 7.593875 TGAAATAAATTCAGAAAATTGCGGG 57.406 32.000 0.00 0.00 43.08 6.13
458 459 3.615224 AATTCAGAAAATTGCGGGCAT 57.385 38.095 0.00 0.00 0.00 4.40
459 460 2.652941 TTCAGAAAATTGCGGGCATC 57.347 45.000 0.00 0.00 0.00 3.91
477 478 1.289160 TCAATGCCAAGCCTAGGACT 58.711 50.000 14.75 6.41 0.00 3.85
483 484 2.642807 TGCCAAGCCTAGGACTTAAACT 59.357 45.455 14.75 0.00 0.00 2.66
486 487 4.082733 GCCAAGCCTAGGACTTAAACTTTG 60.083 45.833 14.75 1.49 0.00 2.77
489 490 3.010250 AGCCTAGGACTTAAACTTTGGGG 59.990 47.826 14.75 0.00 0.00 4.96
491 492 3.590182 CCTAGGACTTAAACTTTGGGGGA 59.410 47.826 1.05 0.00 0.00 4.81
492 493 3.520691 AGGACTTAAACTTTGGGGGAC 57.479 47.619 0.00 0.00 0.00 4.46
493 494 3.061369 AGGACTTAAACTTTGGGGGACT 58.939 45.455 0.00 0.00 0.00 3.85
494 495 3.154710 GGACTTAAACTTTGGGGGACTG 58.845 50.000 0.00 0.00 0.00 3.51
496 497 2.516702 ACTTAAACTTTGGGGGACTGGT 59.483 45.455 0.00 0.00 0.00 4.00
498 499 2.561209 AAACTTTGGGGGACTGGTTT 57.439 45.000 0.00 0.00 0.00 3.27
499 500 2.082140 AACTTTGGGGGACTGGTTTC 57.918 50.000 0.00 0.00 0.00 2.78
500 501 0.187606 ACTTTGGGGGACTGGTTTCC 59.812 55.000 0.00 0.00 34.52 3.13
501 502 0.187361 CTTTGGGGGACTGGTTTCCA 59.813 55.000 0.00 0.00 37.40 3.53
502 503 0.105913 TTTGGGGGACTGGTTTCCAC 60.106 55.000 0.00 0.00 38.52 4.02
519 524 6.014070 GGTTTCCACCATAAAAACCTAACCAT 60.014 38.462 8.59 0.00 45.45 3.55
522 527 7.273457 TCCACCATAAAAACCTAACCATCTA 57.727 36.000 0.00 0.00 0.00 1.98
530 535 6.886178 AAAACCTAACCATCTAAGCTAGGA 57.114 37.500 0.41 0.00 34.43 2.94
532 537 7.453141 AAACCTAACCATCTAAGCTAGGATT 57.547 36.000 0.41 0.00 34.43 3.01
540 545 4.850347 TCTAAGCTAGGATTAGTTCGCC 57.150 45.455 0.00 0.00 33.00 5.54
544 549 2.700897 AGCTAGGATTAGTTCGCCACAT 59.299 45.455 0.00 0.00 0.00 3.21
558 563 3.738282 TCGCCACATTGTAATTTGTTTGC 59.262 39.130 0.00 0.00 0.00 3.68
591 596 7.937649 ACATGTGGTAGTTCTTTAAGAAAACC 58.062 34.615 23.07 23.07 40.37 3.27
596 601 7.854422 GTGGTAGTTCTTTAAGAAAACCGAAAG 59.146 37.037 23.65 3.93 41.71 2.62
609 614 8.185003 AGAAAACCGAAAGAAAAACATGAAAG 57.815 30.769 0.00 0.00 0.00 2.62
656 661 1.802880 GCACGTAGCATACACCTCCAG 60.803 57.143 5.30 0.00 43.24 3.86
658 663 0.389391 CGTAGCATACACCTCCAGGG 59.611 60.000 0.00 0.00 43.24 4.45
660 665 1.054406 TAGCATACACCTCCAGGGGC 61.054 60.000 0.00 0.00 44.30 5.80
663 668 3.281975 ATACACCTCCAGGGGCCCA 62.282 63.158 27.72 2.34 44.30 5.36
693 716 1.714794 CAACTGCAGTAGGAGGAACG 58.285 55.000 22.01 0.00 37.55 3.95
704 727 5.018809 AGTAGGAGGAACGGTAATAACACA 58.981 41.667 0.00 0.00 0.00 3.72
850 873 1.318576 GGCCCAGATTTAATCACCCG 58.681 55.000 7.74 0.00 0.00 5.28
852 875 2.021723 GCCCAGATTTAATCACCCGCA 61.022 52.381 7.74 0.00 0.00 5.69
931 960 2.043450 CTCACTCGCTCCTCCCCT 60.043 66.667 0.00 0.00 0.00 4.79
932 961 2.043852 TCACTCGCTCCTCCCCTC 60.044 66.667 0.00 0.00 0.00 4.30
933 962 3.151022 CACTCGCTCCTCCCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
934 963 4.467107 ACTCGCTCCTCCCCTCCC 62.467 72.222 0.00 0.00 0.00 4.30
951 980 1.738099 CCCGAGACGCAAACAGAGG 60.738 63.158 0.00 0.00 0.00 3.69
952 981 2.383527 CCGAGACGCAAACAGAGGC 61.384 63.158 0.00 0.00 0.00 4.70
953 982 1.664649 CGAGACGCAAACAGAGGCA 60.665 57.895 0.00 0.00 0.00 4.75
955 984 0.880278 GAGACGCAAACAGAGGCACA 60.880 55.000 0.00 0.00 0.00 4.57
956 985 0.882042 AGACGCAAACAGAGGCACAG 60.882 55.000 0.00 0.00 0.00 3.66
969 998 2.021722 GCACAGCCAAGTGACGAAA 58.978 52.632 5.80 0.00 42.05 3.46
1020 1056 2.202987 GACATCCTGGAGCAGCCG 60.203 66.667 1.52 0.00 40.66 5.52
1060 1096 4.779733 TCCACTCCCTCCCCGAGC 62.780 72.222 0.00 0.00 0.00 5.03
1158 1218 1.433064 GCCGTCGTCCACCGTTATA 59.567 57.895 0.00 0.00 37.94 0.98
1159 1219 0.179140 GCCGTCGTCCACCGTTATAA 60.179 55.000 0.00 0.00 37.94 0.98
1188 1248 0.875059 CTTCGAAGCCTTTGGTGGAC 59.125 55.000 13.09 0.00 0.00 4.02
1236 1299 2.474612 GGAGACGGAGAGGTCGCTC 61.475 68.421 0.00 0.00 41.81 5.03
1253 1316 2.069465 CTCGGGAGCTGGAGATCGTG 62.069 65.000 0.00 0.00 31.90 4.35
1264 1327 2.178521 GATCGTGTGAGGCGACGT 59.821 61.111 0.00 0.00 41.33 4.34
1265 1328 1.868251 GATCGTGTGAGGCGACGTC 60.868 63.158 5.18 5.18 41.33 4.34
1353 1416 2.434185 GGATGCTGCGACGTGGAA 60.434 61.111 0.11 0.00 0.00 3.53
1370 1439 3.628280 AAAGCGACGACGAGGAGGC 62.628 63.158 12.29 0.00 42.66 4.70
1446 1518 2.485657 GGATCCTTTCGAATGGGAGGTC 60.486 54.545 25.14 16.89 32.28 3.85
1570 1645 1.219124 GCCGACAGGAGCTTCATGA 59.781 57.895 0.00 0.00 41.02 3.07
1572 1647 0.803768 CCGACAGGAGCTTCATGACG 60.804 60.000 12.57 12.57 43.39 4.35
1629 1707 1.021202 CCGTCTCGAGCTTCTGATCT 58.979 55.000 7.81 0.00 0.00 2.75
1630 1708 1.268488 CCGTCTCGAGCTTCTGATCTG 60.268 57.143 7.81 0.00 0.00 2.90
1635 1737 0.459078 CGAGCTTCTGATCTGCCTCA 59.541 55.000 0.00 0.00 0.00 3.86
1648 1754 7.830697 TCTGATCTGCCTCATTTTTAGATGAAA 59.169 33.333 0.00 0.00 35.74 2.69
1707 1813 6.322491 AGCAAAATGTTTCCGTAGCTTAATC 58.678 36.000 0.00 0.00 0.00 1.75
1710 1818 6.436843 AAATGTTTCCGTAGCTTAATCAGG 57.563 37.500 0.00 0.00 0.00 3.86
1716 1824 2.288886 CCGTAGCTTAATCAGGTAGCCC 60.289 54.545 0.00 0.00 36.10 5.19
1722 1830 4.412199 AGCTTAATCAGGTAGCCCATGTAA 59.588 41.667 0.00 0.00 35.53 2.41
1724 1832 3.577805 AATCAGGTAGCCCATGTAACC 57.422 47.619 0.00 0.00 0.00 2.85
1725 1833 2.263895 TCAGGTAGCCCATGTAACCT 57.736 50.000 0.00 0.00 43.15 3.50
1727 1835 0.546598 AGGTAGCCCATGTAACCTGC 59.453 55.000 5.10 0.00 40.83 4.85
1728 1836 0.254747 GGTAGCCCATGTAACCTGCA 59.745 55.000 0.00 0.00 0.00 4.41
1748 1856 3.361644 GCACTGCACATACAATGTTTTCG 59.638 43.478 0.00 0.00 42.70 3.46
1753 1861 4.217334 TGCACATACAATGTTTTCGTCCAT 59.783 37.500 0.00 0.00 42.70 3.41
1754 1862 4.558470 GCACATACAATGTTTTCGTCCATG 59.442 41.667 0.00 0.00 42.70 3.66
1760 1869 2.610219 TGTTTTCGTCCATGCAATCG 57.390 45.000 0.00 0.00 0.00 3.34
1765 1874 1.647346 TCGTCCATGCAATCGGTTAC 58.353 50.000 0.00 0.00 0.00 2.50
1769 1878 0.381801 CCATGCAATCGGTTACTGCC 59.618 55.000 0.00 0.00 35.13 4.85
1773 1882 1.993369 GCAATCGGTTACTGCCTGCC 61.993 60.000 6.18 0.00 0.00 4.85
1774 1883 0.392998 CAATCGGTTACTGCCTGCCT 60.393 55.000 0.00 0.00 0.00 4.75
1775 1884 0.392998 AATCGGTTACTGCCTGCCTG 60.393 55.000 0.00 0.00 0.00 4.85
1776 1885 2.876368 ATCGGTTACTGCCTGCCTGC 62.876 60.000 0.00 0.00 0.00 4.85
1777 1886 2.034066 GGTTACTGCCTGCCTGCA 59.966 61.111 0.00 0.00 39.37 4.41
1778 1887 1.603455 GGTTACTGCCTGCCTGCAA 60.603 57.895 0.00 0.00 41.51 4.08
1779 1888 1.581447 GTTACTGCCTGCCTGCAAC 59.419 57.895 0.00 0.00 41.51 4.17
1791 1901 1.153667 CTGCAACTCGAGCTCCTCC 60.154 63.158 13.61 0.00 0.00 4.30
1798 1908 2.202676 CGAGCTCCTCCGCTGAAC 60.203 66.667 8.47 0.00 41.08 3.18
1873 1997 4.980573 AGTTACCATTGGCAGTAACAGAA 58.019 39.130 22.48 0.00 46.95 3.02
1874 1998 5.570320 AGTTACCATTGGCAGTAACAGAAT 58.430 37.500 22.48 6.51 46.95 2.40
1875 1999 5.415701 AGTTACCATTGGCAGTAACAGAATG 59.584 40.000 22.48 7.55 46.95 2.67
1878 2002 2.584835 TTGGCAGTAACAGAATGGCT 57.415 45.000 0.41 0.00 43.62 4.75
1881 2005 1.933853 GGCAGTAACAGAATGGCTACG 59.066 52.381 0.00 0.00 43.62 3.51
1890 2045 2.094182 CAGAATGGCTACGTACCAGTGT 60.094 50.000 17.64 12.77 41.46 3.55
1918 2073 9.816354 GCCAAAAGCTTATTATTTTTCTCCATA 57.184 29.630 0.00 0.00 38.99 2.74
1977 2137 2.032799 GTGACGTTTCTTGCCAATCACA 59.967 45.455 0.00 0.00 36.00 3.58
2036 2235 2.351244 TGCCTCACCTACCTCTGCG 61.351 63.158 0.00 0.00 0.00 5.18
2076 2279 2.035321 CCTATCTTTCTCGGCACTCTCC 59.965 54.545 0.00 0.00 0.00 3.71
2077 2280 0.827368 ATCTTTCTCGGCACTCTCCC 59.173 55.000 0.00 0.00 0.00 4.30
2078 2281 0.251832 TCTTTCTCGGCACTCTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
2079 2282 0.174617 CTTTCTCGGCACTCTCCCTC 59.825 60.000 0.00 0.00 0.00 4.30
2080 2283 1.258445 TTTCTCGGCACTCTCCCTCC 61.258 60.000 0.00 0.00 0.00 4.30
2081 2284 2.363018 CTCGGCACTCTCCCTCCA 60.363 66.667 0.00 0.00 0.00 3.86
2082 2285 2.680352 TCGGCACTCTCCCTCCAC 60.680 66.667 0.00 0.00 0.00 4.02
2083 2286 2.681778 CGGCACTCTCCCTCCACT 60.682 66.667 0.00 0.00 0.00 4.00
2084 2287 1.379977 CGGCACTCTCCCTCCACTA 60.380 63.158 0.00 0.00 0.00 2.74
2085 2288 1.388065 CGGCACTCTCCCTCCACTAG 61.388 65.000 0.00 0.00 0.00 2.57
2173 2385 3.105203 CAACAAATTCACCACACGACAC 58.895 45.455 0.00 0.00 0.00 3.67
2211 2428 1.579429 GTGAACGAACCCCACATGC 59.421 57.895 0.00 0.00 0.00 4.06
2226 2443 2.913765 ATGCCTCGCTCTCCGATCG 61.914 63.158 8.51 8.51 46.31 3.69
2227 2444 3.587933 GCCTCGCTCTCCGATCGT 61.588 66.667 15.09 0.00 46.31 3.73
2228 2445 2.634777 CCTCGCTCTCCGATCGTC 59.365 66.667 15.09 0.00 46.31 4.20
2337 2636 0.040425 CCTGCAGTTAACGTTGCCAC 60.040 55.000 13.81 5.03 39.54 5.01
2347 2646 3.522731 GTTGCCACGGTTGGTGCA 61.523 61.111 0.00 0.00 45.98 4.57
2379 2678 0.250510 TTGGGTGCGACATTACTGCA 60.251 50.000 0.00 0.00 36.02 4.41
2383 2682 2.149555 TGCGACATTACTGCACACG 58.850 52.632 0.00 0.00 32.86 4.49
2384 2683 1.225745 GCGACATTACTGCACACGC 60.226 57.895 0.00 0.00 38.03 5.34
2386 2685 0.179250 CGACATTACTGCACACGCAC 60.179 55.000 0.00 0.00 45.36 5.34
2387 2686 0.179250 GACATTACTGCACACGCACG 60.179 55.000 0.00 0.00 45.36 5.34
2388 2687 1.509787 CATTACTGCACACGCACGC 60.510 57.895 0.00 0.00 45.36 5.34
2389 2688 1.958715 ATTACTGCACACGCACGCA 60.959 52.632 0.00 0.00 45.36 5.24
2390 2689 2.170260 ATTACTGCACACGCACGCAC 62.170 55.000 0.00 0.00 45.36 5.34
2394 2693 4.696172 GCACACGCACGCACGTAC 62.696 66.667 2.78 0.00 46.34 3.67
2395 2694 3.028019 CACACGCACGCACGTACT 61.028 61.111 2.78 0.00 46.34 2.73
2396 2695 2.728383 ACACGCACGCACGTACTC 60.728 61.111 2.78 0.00 46.34 2.59
2397 2696 3.467119 CACGCACGCACGTACTCC 61.467 66.667 2.78 0.00 46.34 3.85
2398 2697 4.712425 ACGCACGCACGTACTCCC 62.712 66.667 0.96 0.00 46.19 4.30
2399 2698 4.415332 CGCACGCACGTACTCCCT 62.415 66.667 0.00 0.00 0.00 4.20
2400 2699 2.048503 GCACGCACGTACTCCCTT 60.049 61.111 0.00 0.00 0.00 3.95
2401 2700 2.092882 GCACGCACGTACTCCCTTC 61.093 63.158 0.00 0.00 0.00 3.46
2402 2701 1.585006 CACGCACGTACTCCCTTCT 59.415 57.895 0.00 0.00 0.00 2.85
2403 2702 0.038526 CACGCACGTACTCCCTTCTT 60.039 55.000 0.00 0.00 0.00 2.52
2404 2703 0.677842 ACGCACGTACTCCCTTCTTT 59.322 50.000 0.00 0.00 0.00 2.52
2405 2704 1.336609 ACGCACGTACTCCCTTCTTTC 60.337 52.381 0.00 0.00 0.00 2.62
2406 2705 1.723220 GCACGTACTCCCTTCTTTCC 58.277 55.000 0.00 0.00 0.00 3.13
2407 2706 1.992170 CACGTACTCCCTTCTTTCCG 58.008 55.000 0.00 0.00 0.00 4.30
2408 2707 0.893447 ACGTACTCCCTTCTTTCCGG 59.107 55.000 0.00 0.00 0.00 5.14
2409 2708 0.893447 CGTACTCCCTTCTTTCCGGT 59.107 55.000 0.00 0.00 0.00 5.28
2410 2709 1.274447 CGTACTCCCTTCTTTCCGGTT 59.726 52.381 0.00 0.00 0.00 4.44
2411 2710 2.289257 CGTACTCCCTTCTTTCCGGTTT 60.289 50.000 0.00 0.00 0.00 3.27
2412 2711 3.056607 CGTACTCCCTTCTTTCCGGTTTA 60.057 47.826 0.00 0.00 0.00 2.01
2413 2712 4.382362 CGTACTCCCTTCTTTCCGGTTTAT 60.382 45.833 0.00 0.00 0.00 1.40
2414 2713 5.163519 CGTACTCCCTTCTTTCCGGTTTATA 60.164 44.000 0.00 0.00 0.00 0.98
2415 2714 5.767277 ACTCCCTTCTTTCCGGTTTATAA 57.233 39.130 0.00 0.00 0.00 0.98
2416 2715 5.742063 ACTCCCTTCTTTCCGGTTTATAAG 58.258 41.667 0.00 0.37 0.00 1.73
2417 2716 5.106876 TCCCTTCTTTCCGGTTTATAAGG 57.893 43.478 0.00 9.59 33.37 2.69
2418 2717 3.630769 CCCTTCTTTCCGGTTTATAAGGC 59.369 47.826 15.37 0.00 32.44 4.35
2419 2718 4.524053 CCTTCTTTCCGGTTTATAAGGCT 58.476 43.478 0.00 0.00 0.00 4.58
2420 2719 4.948004 CCTTCTTTCCGGTTTATAAGGCTT 59.052 41.667 4.58 4.58 0.00 4.35
2421 2720 6.117488 CCTTCTTTCCGGTTTATAAGGCTTA 58.883 40.000 9.79 9.79 0.00 3.09
2422 2721 6.600427 CCTTCTTTCCGGTTTATAAGGCTTAA 59.400 38.462 11.59 0.00 0.00 1.85
2423 2722 6.990341 TCTTTCCGGTTTATAAGGCTTAAC 57.010 37.500 11.59 6.93 0.00 2.01
2424 2723 6.714278 TCTTTCCGGTTTATAAGGCTTAACT 58.286 36.000 11.59 0.00 0.00 2.24
2425 2724 7.170277 TCTTTCCGGTTTATAAGGCTTAACTT 58.830 34.615 11.59 0.00 34.52 2.66
2426 2725 8.320617 TCTTTCCGGTTTATAAGGCTTAACTTA 58.679 33.333 11.59 0.00 37.35 2.24
2427 2726 8.860780 TTTCCGGTTTATAAGGCTTAACTTAA 57.139 30.769 11.59 3.00 36.60 1.85
2428 2727 8.860780 TTCCGGTTTATAAGGCTTAACTTAAA 57.139 30.769 11.59 8.95 36.60 1.52
2429 2728 8.860780 TCCGGTTTATAAGGCTTAACTTAAAA 57.139 30.769 11.59 4.86 36.60 1.52
2430 2729 9.294614 TCCGGTTTATAAGGCTTAACTTAAAAA 57.705 29.630 11.59 3.26 36.60 1.94
2438 2737 7.833285 AAGGCTTAACTTAAAAATCTCACCA 57.167 32.000 0.00 0.00 0.00 4.17
2439 2738 7.833285 AGGCTTAACTTAAAAATCTCACCAA 57.167 32.000 0.00 0.00 0.00 3.67
2440 2739 7.658261 AGGCTTAACTTAAAAATCTCACCAAC 58.342 34.615 0.00 0.00 0.00 3.77
2441 2740 6.866770 GGCTTAACTTAAAAATCTCACCAACC 59.133 38.462 0.00 0.00 0.00 3.77
2442 2741 7.430441 GCTTAACTTAAAAATCTCACCAACCA 58.570 34.615 0.00 0.00 0.00 3.67
2443 2742 7.923878 GCTTAACTTAAAAATCTCACCAACCAA 59.076 33.333 0.00 0.00 0.00 3.67
2444 2743 9.463443 CTTAACTTAAAAATCTCACCAACCAAG 57.537 33.333 0.00 0.00 0.00 3.61
2445 2744 7.654022 AACTTAAAAATCTCACCAACCAAGA 57.346 32.000 0.00 0.00 0.00 3.02
2446 2745 7.839680 ACTTAAAAATCTCACCAACCAAGAT 57.160 32.000 0.00 0.00 0.00 2.40
2447 2746 8.934023 ACTTAAAAATCTCACCAACCAAGATA 57.066 30.769 0.00 0.00 0.00 1.98
2448 2747 9.014297 ACTTAAAAATCTCACCAACCAAGATAG 57.986 33.333 0.00 0.00 0.00 2.08
2449 2748 9.231297 CTTAAAAATCTCACCAACCAAGATAGA 57.769 33.333 0.00 0.00 0.00 1.98
2450 2749 9.753674 TTAAAAATCTCACCAACCAAGATAGAT 57.246 29.630 0.00 0.00 0.00 1.98
2451 2750 7.636150 AAAATCTCACCAACCAAGATAGATG 57.364 36.000 0.00 0.00 0.00 2.90
2452 2751 4.760530 TCTCACCAACCAAGATAGATGG 57.239 45.455 0.00 0.00 43.84 3.51
2461 2760 3.801698 CCAAGATAGATGGTGAGTGGTG 58.198 50.000 0.00 0.00 33.08 4.17
2462 2761 3.432749 CCAAGATAGATGGTGAGTGGTGG 60.433 52.174 0.00 0.00 33.08 4.61
2463 2762 3.404869 AGATAGATGGTGAGTGGTGGA 57.595 47.619 0.00 0.00 0.00 4.02
2464 2763 3.724478 AGATAGATGGTGAGTGGTGGAA 58.276 45.455 0.00 0.00 0.00 3.53
2465 2764 4.302067 AGATAGATGGTGAGTGGTGGAAT 58.698 43.478 0.00 0.00 0.00 3.01
2466 2765 5.467738 AGATAGATGGTGAGTGGTGGAATA 58.532 41.667 0.00 0.00 0.00 1.75
2467 2766 3.914426 AGATGGTGAGTGGTGGAATAC 57.086 47.619 0.00 0.00 0.00 1.89
2468 2767 3.454858 AGATGGTGAGTGGTGGAATACT 58.545 45.455 0.00 0.00 0.00 2.12
2469 2768 3.846588 AGATGGTGAGTGGTGGAATACTT 59.153 43.478 0.00 0.00 0.00 2.24
2470 2769 4.289672 AGATGGTGAGTGGTGGAATACTTT 59.710 41.667 0.00 0.00 0.00 2.66
2471 2770 4.447138 TGGTGAGTGGTGGAATACTTTT 57.553 40.909 0.00 0.00 0.00 2.27
2472 2771 4.798882 TGGTGAGTGGTGGAATACTTTTT 58.201 39.130 0.00 0.00 0.00 1.94
2473 2772 4.582656 TGGTGAGTGGTGGAATACTTTTTG 59.417 41.667 0.00 0.00 0.00 2.44
2474 2773 4.583073 GGTGAGTGGTGGAATACTTTTTGT 59.417 41.667 0.00 0.00 0.00 2.83
2475 2774 5.766174 GGTGAGTGGTGGAATACTTTTTGTA 59.234 40.000 0.00 0.00 35.37 2.41
2476 2775 6.072673 GGTGAGTGGTGGAATACTTTTTGTAG 60.073 42.308 0.00 0.00 34.24 2.74
2477 2776 6.485648 GTGAGTGGTGGAATACTTTTTGTAGT 59.514 38.462 0.00 0.00 34.24 2.73
2478 2777 7.012989 GTGAGTGGTGGAATACTTTTTGTAGTT 59.987 37.037 0.00 0.00 34.24 2.24
2479 2778 7.558444 TGAGTGGTGGAATACTTTTTGTAGTTT 59.442 33.333 0.00 0.00 34.24 2.66
2480 2779 7.712797 AGTGGTGGAATACTTTTTGTAGTTTG 58.287 34.615 0.00 0.00 34.24 2.93
2481 2780 6.419710 GTGGTGGAATACTTTTTGTAGTTTGC 59.580 38.462 0.00 0.00 34.24 3.68
2482 2781 6.096987 TGGTGGAATACTTTTTGTAGTTTGCA 59.903 34.615 0.00 0.00 34.24 4.08
2483 2782 6.981559 GGTGGAATACTTTTTGTAGTTTGCAA 59.018 34.615 0.00 0.00 34.24 4.08
2484 2783 7.492994 GGTGGAATACTTTTTGTAGTTTGCAAA 59.507 33.333 8.05 8.05 34.24 3.68
2485 2784 8.874816 GTGGAATACTTTTTGTAGTTTGCAAAA 58.125 29.630 14.67 0.00 42.03 2.44
2486 2785 9.436957 TGGAATACTTTTTGTAGTTTGCAAAAA 57.563 25.926 14.67 14.14 46.79 1.94
2487 2786 9.697250 GGAATACTTTTTGTAGTTTGCAAAAAC 57.303 29.630 14.67 15.26 45.24 2.43
2492 2791 8.778358 ACTTTTTGTAGTTTGCAAAAACATTCA 58.222 25.926 22.35 10.48 45.24 2.57
2493 2792 9.604626 CTTTTTGTAGTTTGCAAAAACATTCAA 57.395 25.926 22.35 14.46 45.24 2.69
2568 2867 7.899178 CAATCCATGCATGCATAAATTACAT 57.101 32.000 31.73 13.09 34.91 2.29
2569 2868 7.738345 CAATCCATGCATGCATAAATTACATG 58.262 34.615 31.73 17.75 43.21 3.21
2580 2879 7.718272 GCATAAATTACATGCATTGGTCAAT 57.282 32.000 16.27 0.00 46.47 2.57
2581 2880 8.145316 GCATAAATTACATGCATTGGTCAATT 57.855 30.769 16.27 0.00 46.47 2.32
2582 2881 8.614346 GCATAAATTACATGCATTGGTCAATTT 58.386 29.630 16.27 7.43 46.47 1.82
2585 2884 8.851541 AAATTACATGCATTGGTCAATTTTCT 57.148 26.923 0.00 0.00 28.85 2.52
2586 2885 8.483307 AATTACATGCATTGGTCAATTTTCTC 57.517 30.769 0.00 0.00 0.00 2.87
2587 2886 5.733620 ACATGCATTGGTCAATTTTCTCT 57.266 34.783 0.00 0.00 0.00 3.10
2588 2887 6.105397 ACATGCATTGGTCAATTTTCTCTT 57.895 33.333 0.00 0.00 0.00 2.85
2589 2888 7.230849 ACATGCATTGGTCAATTTTCTCTTA 57.769 32.000 0.00 0.00 0.00 2.10
2590 2889 7.669427 ACATGCATTGGTCAATTTTCTCTTAA 58.331 30.769 0.00 0.00 0.00 1.85
2591 2890 8.316214 ACATGCATTGGTCAATTTTCTCTTAAT 58.684 29.630 0.00 0.00 0.00 1.40
2592 2891 9.806203 CATGCATTGGTCAATTTTCTCTTAATA 57.194 29.630 0.00 0.00 0.00 0.98
2593 2892 9.807649 ATGCATTGGTCAATTTTCTCTTAATAC 57.192 29.630 0.00 0.00 0.00 1.89
2594 2893 9.023962 TGCATTGGTCAATTTTCTCTTAATACT 57.976 29.630 0.00 0.00 0.00 2.12
2595 2894 9.860898 GCATTGGTCAATTTTCTCTTAATACTT 57.139 29.630 0.00 0.00 0.00 2.24
2597 2896 9.860898 ATTGGTCAATTTTCTCTTAATACTTGC 57.139 29.630 0.00 0.00 0.00 4.01
2598 2897 8.402798 TGGTCAATTTTCTCTTAATACTTGCA 57.597 30.769 0.00 0.00 0.00 4.08
2599 2898 9.023962 TGGTCAATTTTCTCTTAATACTTGCAT 57.976 29.630 0.00 0.00 0.00 3.96
2600 2899 9.294030 GGTCAATTTTCTCTTAATACTTGCATG 57.706 33.333 0.00 0.00 0.00 4.06
2601 2900 8.801913 GTCAATTTTCTCTTAATACTTGCATGC 58.198 33.333 11.82 11.82 0.00 4.06
2602 2901 8.522003 TCAATTTTCTCTTAATACTTGCATGCA 58.478 29.630 18.46 18.46 0.00 3.96
2603 2902 9.142515 CAATTTTCTCTTAATACTTGCATGCAA 57.857 29.630 30.12 30.12 0.00 4.08
2604 2903 9.880157 AATTTTCTCTTAATACTTGCATGCAAT 57.120 25.926 31.96 22.79 35.20 3.56
2624 2923 8.725405 TGCAATGATTTAATGCATCTTGAAAT 57.275 26.923 0.00 4.19 44.52 2.17
2625 2924 8.822855 TGCAATGATTTAATGCATCTTGAAATC 58.177 29.630 19.43 19.43 44.52 2.17
2626 2925 9.042008 GCAATGATTTAATGCATCTTGAAATCT 57.958 29.630 23.04 13.75 39.81 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.501610 GCCAGTCAGGGATCGTCC 59.498 66.667 0.00 0.00 38.09 4.79
3 4 2.105128 CGCCAGTCAGGGATCGTC 59.895 66.667 0.00 0.00 38.09 4.20
5 6 2.202797 CACGCCAGTCAGGGATCG 60.203 66.667 0.00 0.00 38.09 3.69
7 8 1.913262 TGACACGCCAGTCAGGGAT 60.913 57.895 2.01 0.00 43.18 3.85
8 9 2.523168 TGACACGCCAGTCAGGGA 60.523 61.111 2.01 0.00 43.18 4.20
12 13 0.176910 TCTTTGTGACACGCCAGTCA 59.823 50.000 0.22 2.01 45.64 3.41
13 14 0.582005 GTCTTTGTGACACGCCAGTC 59.418 55.000 0.22 0.00 44.73 3.51
14 15 2.690326 GTCTTTGTGACACGCCAGT 58.310 52.632 0.22 0.00 44.73 4.00
22 23 2.924290 GACATAGCCGAGTCTTTGTGAC 59.076 50.000 0.00 0.00 45.67 3.67
23 24 2.415491 CGACATAGCCGAGTCTTTGTGA 60.415 50.000 0.00 0.00 30.32 3.58
24 25 1.920574 CGACATAGCCGAGTCTTTGTG 59.079 52.381 0.00 0.00 30.32 3.33
25 26 1.736032 GCGACATAGCCGAGTCTTTGT 60.736 52.381 0.00 0.00 32.31 2.83
26 27 0.924090 GCGACATAGCCGAGTCTTTG 59.076 55.000 0.00 0.00 32.68 2.77
27 28 0.525668 CGCGACATAGCCGAGTCTTT 60.526 55.000 0.00 0.00 32.68 2.52
28 29 1.064296 CGCGACATAGCCGAGTCTT 59.936 57.895 0.00 0.00 32.68 3.01
29 30 2.113433 ACGCGACATAGCCGAGTCT 61.113 57.895 15.93 0.00 35.25 3.24
30 31 1.939785 CACGCGACATAGCCGAGTC 60.940 63.158 15.93 0.00 37.93 3.36
31 32 2.102357 CACGCGACATAGCCGAGT 59.898 61.111 15.93 0.00 40.45 4.18
32 33 3.323136 GCACGCGACATAGCCGAG 61.323 66.667 15.93 0.00 0.00 4.63
33 34 3.634702 TTGCACGCGACATAGCCGA 62.635 57.895 15.93 0.00 0.00 5.54
34 35 3.185365 TTGCACGCGACATAGCCG 61.185 61.111 15.93 0.00 0.00 5.52
35 36 1.906994 TTGTTGCACGCGACATAGCC 61.907 55.000 15.93 0.23 39.76 3.93
36 37 0.519175 CTTGTTGCACGCGACATAGC 60.519 55.000 15.93 9.23 39.76 2.97
37 38 0.790207 ACTTGTTGCACGCGACATAG 59.210 50.000 15.93 13.93 39.76 2.23
38 39 0.787787 GACTTGTTGCACGCGACATA 59.212 50.000 15.93 0.04 39.76 2.29
39 40 1.569493 GACTTGTTGCACGCGACAT 59.431 52.632 15.93 0.00 39.76 3.06
40 41 2.866010 CGACTTGTTGCACGCGACA 61.866 57.895 15.93 8.01 38.45 4.35
41 42 2.128128 CGACTTGTTGCACGCGAC 60.128 61.111 15.93 4.74 0.00 5.19
42 43 1.697772 AAACGACTTGTTGCACGCGA 61.698 50.000 15.93 0.00 40.84 5.87
43 44 0.042880 TAAACGACTTGTTGCACGCG 60.043 50.000 3.53 3.53 40.84 6.01
44 45 1.771291 GTTAAACGACTTGTTGCACGC 59.229 47.619 0.00 0.00 40.84 5.34
45 46 2.223066 TGGTTAAACGACTTGTTGCACG 60.223 45.455 0.00 0.00 40.84 5.34
46 47 3.359654 CTGGTTAAACGACTTGTTGCAC 58.640 45.455 0.00 0.00 40.84 4.57
47 48 2.223386 GCTGGTTAAACGACTTGTTGCA 60.223 45.455 0.00 0.00 40.84 4.08
48 49 2.032924 AGCTGGTTAAACGACTTGTTGC 59.967 45.455 0.00 0.00 40.84 4.17
49 50 3.311322 TGAGCTGGTTAAACGACTTGTTG 59.689 43.478 0.00 0.00 40.84 3.33
50 51 3.537580 TGAGCTGGTTAAACGACTTGTT 58.462 40.909 0.00 0.00 44.59 2.83
51 52 3.188159 TGAGCTGGTTAAACGACTTGT 57.812 42.857 0.00 0.00 0.00 3.16
52 53 4.749245 ATTGAGCTGGTTAAACGACTTG 57.251 40.909 0.00 0.00 0.00 3.16
53 54 4.935808 CCTATTGAGCTGGTTAAACGACTT 59.064 41.667 0.00 0.00 0.00 3.01
54 55 4.020485 ACCTATTGAGCTGGTTAAACGACT 60.020 41.667 0.00 0.00 0.00 4.18
55 56 4.251268 ACCTATTGAGCTGGTTAAACGAC 58.749 43.478 0.00 0.00 0.00 4.34
56 57 4.546829 ACCTATTGAGCTGGTTAAACGA 57.453 40.909 0.00 0.00 0.00 3.85
57 58 4.270325 GCTACCTATTGAGCTGGTTAAACG 59.730 45.833 0.00 0.00 35.73 3.60
58 59 5.183228 TGCTACCTATTGAGCTGGTTAAAC 58.817 41.667 0.00 0.00 39.54 2.01
59 60 5.429681 TGCTACCTATTGAGCTGGTTAAA 57.570 39.130 0.00 0.00 39.54 1.52
60 61 5.630415 ATGCTACCTATTGAGCTGGTTAA 57.370 39.130 0.00 0.00 39.54 2.01
61 62 5.011738 GGTATGCTACCTATTGAGCTGGTTA 59.988 44.000 0.00 0.00 45.52 2.85
62 63 4.202367 GGTATGCTACCTATTGAGCTGGTT 60.202 45.833 0.00 0.00 45.52 3.67
63 64 3.325135 GGTATGCTACCTATTGAGCTGGT 59.675 47.826 0.00 0.00 45.52 4.00
64 65 3.931578 GGTATGCTACCTATTGAGCTGG 58.068 50.000 0.00 0.00 45.52 4.85
80 81 2.983229 AGAGCTCTGTTGCAAGGTATG 58.017 47.619 17.42 0.00 34.99 2.39
81 82 3.710209 AAGAGCTCTGTTGCAAGGTAT 57.290 42.857 19.06 0.00 34.99 2.73
82 83 3.403038 GAAAGAGCTCTGTTGCAAGGTA 58.597 45.455 19.06 0.00 34.99 3.08
83 84 2.225467 GAAAGAGCTCTGTTGCAAGGT 58.775 47.619 19.06 0.00 34.99 3.50
84 85 1.196354 CGAAAGAGCTCTGTTGCAAGG 59.804 52.381 19.06 0.00 34.99 3.61
85 86 1.196354 CCGAAAGAGCTCTGTTGCAAG 59.804 52.381 19.06 0.00 34.99 4.01
86 87 1.229428 CCGAAAGAGCTCTGTTGCAA 58.771 50.000 19.06 0.00 34.99 4.08
87 88 0.106708 ACCGAAAGAGCTCTGTTGCA 59.893 50.000 19.06 0.00 34.99 4.08
88 89 0.514691 CACCGAAAGAGCTCTGTTGC 59.485 55.000 19.06 0.00 0.00 4.17
89 90 1.528586 CACACCGAAAGAGCTCTGTTG 59.471 52.381 19.06 16.07 0.00 3.33
90 91 1.541233 CCACACCGAAAGAGCTCTGTT 60.541 52.381 19.06 13.48 0.00 3.16
91 92 0.034059 CCACACCGAAAGAGCTCTGT 59.966 55.000 19.06 12.81 0.00 3.41
92 93 1.294659 GCCACACCGAAAGAGCTCTG 61.295 60.000 19.06 7.16 0.00 3.35
93 94 1.004440 GCCACACCGAAAGAGCTCT 60.004 57.895 11.45 11.45 0.00 4.09
94 95 2.383527 CGCCACACCGAAAGAGCTC 61.384 63.158 5.27 5.27 0.00 4.09
95 96 2.357517 CGCCACACCGAAAGAGCT 60.358 61.111 0.00 0.00 0.00 4.09
96 97 3.423154 CCGCCACACCGAAAGAGC 61.423 66.667 0.00 0.00 0.00 4.09
97 98 1.597027 AACCGCCACACCGAAAGAG 60.597 57.895 0.00 0.00 0.00 2.85
98 99 1.890041 CAACCGCCACACCGAAAGA 60.890 57.895 0.00 0.00 0.00 2.52
99 100 2.637025 CAACCGCCACACCGAAAG 59.363 61.111 0.00 0.00 0.00 2.62
100 101 3.587933 GCAACCGCCACACCGAAA 61.588 61.111 0.00 0.00 0.00 3.46
101 102 4.555709 AGCAACCGCCACACCGAA 62.556 61.111 0.00 0.00 39.83 4.30
102 103 4.980805 GAGCAACCGCCACACCGA 62.981 66.667 0.00 0.00 39.83 4.69
117 118 3.417275 ATCGGAGAAGGTGCGCGAG 62.417 63.158 12.10 0.00 43.58 5.03
118 119 3.449227 ATCGGAGAAGGTGCGCGA 61.449 61.111 12.10 0.00 43.58 5.87
119 120 3.257561 CATCGGAGAAGGTGCGCG 61.258 66.667 0.00 0.00 43.58 6.86
120 121 2.892425 CCATCGGAGAAGGTGCGC 60.892 66.667 0.00 0.00 41.04 6.09
126 127 1.293924 GATGTGCACCATCGGAGAAG 58.706 55.000 15.69 0.00 43.58 2.85
127 128 3.458872 GATGTGCACCATCGGAGAA 57.541 52.632 15.69 0.00 43.58 2.87
133 134 3.576356 CCGCCGATGTGCACCATC 61.576 66.667 15.69 15.41 45.50 3.51
157 158 2.289072 CCTACTAGTCGCCCATCATTGG 60.289 54.545 0.00 0.00 43.23 3.16
158 159 2.365617 ACCTACTAGTCGCCCATCATTG 59.634 50.000 0.00 0.00 0.00 2.82
159 160 2.679082 ACCTACTAGTCGCCCATCATT 58.321 47.619 0.00 0.00 0.00 2.57
160 161 2.383442 ACCTACTAGTCGCCCATCAT 57.617 50.000 0.00 0.00 0.00 2.45
161 162 2.154567 AACCTACTAGTCGCCCATCA 57.845 50.000 0.00 0.00 0.00 3.07
162 163 2.483188 CCAAACCTACTAGTCGCCCATC 60.483 54.545 0.00 0.00 0.00 3.51
163 164 1.485066 CCAAACCTACTAGTCGCCCAT 59.515 52.381 0.00 0.00 0.00 4.00
164 165 0.899720 CCAAACCTACTAGTCGCCCA 59.100 55.000 0.00 0.00 0.00 5.36
165 166 0.177373 CCCAAACCTACTAGTCGCCC 59.823 60.000 0.00 0.00 0.00 6.13
166 167 0.461516 GCCCAAACCTACTAGTCGCC 60.462 60.000 0.00 0.00 0.00 5.54
167 168 0.248289 TGCCCAAACCTACTAGTCGC 59.752 55.000 0.00 0.00 0.00 5.19
168 169 1.274167 TGTGCCCAAACCTACTAGTCG 59.726 52.381 0.00 0.00 0.00 4.18
169 170 2.354805 CCTGTGCCCAAACCTACTAGTC 60.355 54.545 0.00 0.00 0.00 2.59
170 171 1.628846 CCTGTGCCCAAACCTACTAGT 59.371 52.381 0.00 0.00 0.00 2.57
171 172 1.065418 CCCTGTGCCCAAACCTACTAG 60.065 57.143 0.00 0.00 0.00 2.57
172 173 0.988832 CCCTGTGCCCAAACCTACTA 59.011 55.000 0.00 0.00 0.00 1.82
173 174 0.770557 TCCCTGTGCCCAAACCTACT 60.771 55.000 0.00 0.00 0.00 2.57
174 175 0.608308 GTCCCTGTGCCCAAACCTAC 60.608 60.000 0.00 0.00 0.00 3.18
175 176 1.765074 GTCCCTGTGCCCAAACCTA 59.235 57.895 0.00 0.00 0.00 3.08
176 177 2.520968 GTCCCTGTGCCCAAACCT 59.479 61.111 0.00 0.00 0.00 3.50
177 178 2.600470 GGTCCCTGTGCCCAAACC 60.600 66.667 0.00 0.00 0.00 3.27
178 179 1.603739 GAGGTCCCTGTGCCCAAAC 60.604 63.158 0.00 0.00 0.00 2.93
179 180 2.840753 GGAGGTCCCTGTGCCCAAA 61.841 63.158 0.00 0.00 0.00 3.28
180 181 3.256960 GGAGGTCCCTGTGCCCAA 61.257 66.667 0.00 0.00 0.00 4.12
183 184 3.775654 CTCGGAGGTCCCTGTGCC 61.776 72.222 0.00 0.00 0.00 5.01
184 185 3.775654 CCTCGGAGGTCCCTGTGC 61.776 72.222 16.15 0.00 0.00 4.57
193 194 2.499214 CTCCAAGAGACCTCGGAGG 58.501 63.158 22.40 22.40 41.20 4.30
195 196 0.404426 TCACTCCAAGAGACCTCGGA 59.596 55.000 0.00 0.00 33.32 4.55
196 197 0.528470 GTCACTCCAAGAGACCTCGG 59.472 60.000 0.00 0.00 30.97 4.63
201 202 0.038159 CACGGGTCACTCCAAGAGAC 60.038 60.000 0.00 0.00 35.49 3.36
202 203 0.469331 ACACGGGTCACTCCAAGAGA 60.469 55.000 0.00 0.00 38.11 3.10
203 204 1.067776 GTACACGGGTCACTCCAAGAG 60.068 57.143 0.00 0.00 38.11 2.85
204 205 0.963962 GTACACGGGTCACTCCAAGA 59.036 55.000 0.00 0.00 38.11 3.02
205 206 0.677288 TGTACACGGGTCACTCCAAG 59.323 55.000 0.00 0.00 38.11 3.61
206 207 0.390124 GTGTACACGGGTCACTCCAA 59.610 55.000 10.84 0.00 38.11 3.53
207 208 0.756070 TGTGTACACGGGTCACTCCA 60.756 55.000 20.61 0.00 38.11 3.86
208 209 0.390124 TTGTGTACACGGGTCACTCC 59.610 55.000 20.61 0.00 33.82 3.85
209 210 2.066262 CATTGTGTACACGGGTCACTC 58.934 52.381 20.61 7.07 33.82 3.51
210 211 1.414919 ACATTGTGTACACGGGTCACT 59.585 47.619 20.61 0.00 33.82 3.41
211 212 1.873698 ACATTGTGTACACGGGTCAC 58.126 50.000 20.61 3.12 0.00 3.67
212 213 3.747854 TTACATTGTGTACACGGGTCA 57.252 42.857 20.61 7.72 31.69 4.02
213 214 5.049267 ACAAATTACATTGTGTACACGGGTC 60.049 40.000 20.61 0.00 41.78 4.46
214 215 4.822896 ACAAATTACATTGTGTACACGGGT 59.177 37.500 20.61 18.77 41.78 5.28
215 216 5.365403 ACAAATTACATTGTGTACACGGG 57.635 39.130 20.61 14.32 41.78 5.28
216 217 6.693545 ACAAACAAATTACATTGTGTACACGG 59.306 34.615 20.61 14.66 42.49 4.94
217 218 7.672351 ACAAACAAATTACATTGTGTACACG 57.328 32.000 20.61 9.45 42.49 4.49
232 233 9.445786 CGTCTCTATGTGTTAAAACAAACAAAT 57.554 29.630 1.76 0.00 40.85 2.32
233 234 7.429920 GCGTCTCTATGTGTTAAAACAAACAAA 59.570 33.333 1.76 0.00 40.85 2.83
234 235 6.908284 GCGTCTCTATGTGTTAAAACAAACAA 59.092 34.615 1.76 0.00 40.85 2.83
235 236 6.259167 AGCGTCTCTATGTGTTAAAACAAACA 59.741 34.615 1.76 0.00 41.21 2.83
236 237 6.656003 AGCGTCTCTATGTGTTAAAACAAAC 58.344 36.000 1.76 0.00 41.21 2.93
237 238 6.480651 TGAGCGTCTCTATGTGTTAAAACAAA 59.519 34.615 1.76 0.00 41.21 2.83
238 239 5.986741 TGAGCGTCTCTATGTGTTAAAACAA 59.013 36.000 1.76 0.00 41.21 2.83
239 240 5.534407 TGAGCGTCTCTATGTGTTAAAACA 58.466 37.500 0.00 0.00 36.38 2.83
240 241 6.648725 ATGAGCGTCTCTATGTGTTAAAAC 57.351 37.500 8.07 0.00 0.00 2.43
241 242 7.317390 TGTATGAGCGTCTCTATGTGTTAAAA 58.683 34.615 8.07 0.00 0.00 1.52
242 243 6.859017 TGTATGAGCGTCTCTATGTGTTAAA 58.141 36.000 8.07 0.00 0.00 1.52
243 244 6.445357 TGTATGAGCGTCTCTATGTGTTAA 57.555 37.500 8.07 0.00 0.00 2.01
244 245 6.635030 ATGTATGAGCGTCTCTATGTGTTA 57.365 37.500 8.07 0.00 0.00 2.41
245 246 4.983671 TGTATGAGCGTCTCTATGTGTT 57.016 40.909 8.07 0.00 0.00 3.32
246 247 5.334182 CGTATGTATGAGCGTCTCTATGTGT 60.334 44.000 8.07 0.00 0.00 3.72
247 248 5.082723 CGTATGTATGAGCGTCTCTATGTG 58.917 45.833 8.07 0.00 0.00 3.21
248 249 4.378563 GCGTATGTATGAGCGTCTCTATGT 60.379 45.833 8.07 0.00 0.00 2.29
249 250 4.092120 GCGTATGTATGAGCGTCTCTATG 58.908 47.826 8.07 0.47 0.00 2.23
250 251 3.127203 GGCGTATGTATGAGCGTCTCTAT 59.873 47.826 8.07 3.86 0.00 1.98
251 252 2.483106 GGCGTATGTATGAGCGTCTCTA 59.517 50.000 8.07 0.00 0.00 2.43
252 253 1.267261 GGCGTATGTATGAGCGTCTCT 59.733 52.381 8.07 0.00 0.00 3.10
253 254 1.666311 GGGCGTATGTATGAGCGTCTC 60.666 57.143 0.58 0.58 0.00 3.36
254 255 0.314302 GGGCGTATGTATGAGCGTCT 59.686 55.000 0.00 0.00 0.00 4.18
255 256 0.031585 TGGGCGTATGTATGAGCGTC 59.968 55.000 0.00 0.00 0.00 5.19
256 257 0.679505 ATGGGCGTATGTATGAGCGT 59.320 50.000 0.00 0.00 0.00 5.07
257 258 1.795768 AATGGGCGTATGTATGAGCG 58.204 50.000 0.00 0.00 0.00 5.03
258 259 3.435671 GGTTAATGGGCGTATGTATGAGC 59.564 47.826 0.00 0.00 0.00 4.26
259 260 4.000988 GGGTTAATGGGCGTATGTATGAG 58.999 47.826 0.00 0.00 0.00 2.90
260 261 3.649023 AGGGTTAATGGGCGTATGTATGA 59.351 43.478 0.00 0.00 0.00 2.15
261 262 4.015872 AGGGTTAATGGGCGTATGTATG 57.984 45.455 0.00 0.00 0.00 2.39
262 263 4.349930 AGAAGGGTTAATGGGCGTATGTAT 59.650 41.667 0.00 0.00 0.00 2.29
263 264 3.712733 AGAAGGGTTAATGGGCGTATGTA 59.287 43.478 0.00 0.00 0.00 2.29
264 265 2.508300 AGAAGGGTTAATGGGCGTATGT 59.492 45.455 0.00 0.00 0.00 2.29
265 266 2.878406 CAGAAGGGTTAATGGGCGTATG 59.122 50.000 0.00 0.00 0.00 2.39
266 267 2.775384 TCAGAAGGGTTAATGGGCGTAT 59.225 45.455 0.00 0.00 0.00 3.06
267 268 2.169769 CTCAGAAGGGTTAATGGGCGTA 59.830 50.000 0.00 0.00 0.00 4.42
268 269 0.988832 TCAGAAGGGTTAATGGGCGT 59.011 50.000 0.00 0.00 0.00 5.68
269 270 1.668419 CTCAGAAGGGTTAATGGGCG 58.332 55.000 0.00 0.00 0.00 6.13
270 271 1.393603 GCTCAGAAGGGTTAATGGGC 58.606 55.000 0.00 0.00 30.92 5.36
271 272 1.668419 CGCTCAGAAGGGTTAATGGG 58.332 55.000 0.00 0.00 0.00 4.00
272 273 1.017387 GCGCTCAGAAGGGTTAATGG 58.983 55.000 0.00 0.00 37.74 3.16
273 274 1.398390 GTGCGCTCAGAAGGGTTAATG 59.602 52.381 9.73 0.00 37.74 1.90
274 275 1.003118 TGTGCGCTCAGAAGGGTTAAT 59.997 47.619 9.73 0.00 37.74 1.40
275 276 0.394938 TGTGCGCTCAGAAGGGTTAA 59.605 50.000 9.73 0.00 37.74 2.01
276 277 0.613260 ATGTGCGCTCAGAAGGGTTA 59.387 50.000 17.93 0.00 37.74 2.85
277 278 0.957395 CATGTGCGCTCAGAAGGGTT 60.957 55.000 17.93 0.00 37.74 4.11
278 279 1.376424 CATGTGCGCTCAGAAGGGT 60.376 57.895 17.93 0.00 37.74 4.34
279 280 0.108186 TACATGTGCGCTCAGAAGGG 60.108 55.000 17.93 7.20 38.45 3.95
280 281 1.002366 GTACATGTGCGCTCAGAAGG 58.998 55.000 17.93 9.46 0.00 3.46
281 282 1.391485 GTGTACATGTGCGCTCAGAAG 59.609 52.381 18.77 12.08 0.00 2.85
282 283 1.270041 TGTGTACATGTGCGCTCAGAA 60.270 47.619 24.74 4.88 0.00 3.02
283 284 0.316841 TGTGTACATGTGCGCTCAGA 59.683 50.000 24.74 5.24 0.00 3.27
284 285 0.439985 GTGTGTACATGTGCGCTCAG 59.560 55.000 24.74 11.83 0.00 3.35
285 286 0.948623 GGTGTGTACATGTGCGCTCA 60.949 55.000 24.74 15.29 0.00 4.26
286 287 1.635663 GGGTGTGTACATGTGCGCTC 61.636 60.000 24.74 21.15 0.00 5.03
287 288 1.671054 GGGTGTGTACATGTGCGCT 60.671 57.895 24.74 0.00 0.00 5.92
288 289 0.390603 TAGGGTGTGTACATGTGCGC 60.391 55.000 19.16 19.16 0.00 6.09
289 290 1.355971 GTAGGGTGTGTACATGTGCG 58.644 55.000 9.11 0.00 0.00 5.34
290 291 1.677820 GGGTAGGGTGTGTACATGTGC 60.678 57.143 9.11 8.01 0.00 4.57
291 292 1.065709 GGGGTAGGGTGTGTACATGTG 60.066 57.143 9.11 0.00 0.00 3.21
292 293 1.203389 AGGGGTAGGGTGTGTACATGT 60.203 52.381 2.69 2.69 0.00 3.21
293 294 1.580059 AGGGGTAGGGTGTGTACATG 58.420 55.000 0.00 0.00 0.00 3.21
294 295 3.051650 TCATAGGGGTAGGGTGTGTACAT 60.052 47.826 0.00 0.00 0.00 2.29
295 296 2.315459 TCATAGGGGTAGGGTGTGTACA 59.685 50.000 0.00 0.00 0.00 2.90
296 297 2.963782 CTCATAGGGGTAGGGTGTGTAC 59.036 54.545 0.00 0.00 0.00 2.90
297 298 2.860679 TCTCATAGGGGTAGGGTGTGTA 59.139 50.000 0.00 0.00 0.00 2.90
304 305 3.155501 CGTAGGTTCTCATAGGGGTAGG 58.844 54.545 0.00 0.00 0.00 3.18
308 309 3.150767 CTCTCGTAGGTTCTCATAGGGG 58.849 54.545 0.00 0.00 0.00 4.79
312 313 5.759273 GCTTAGTCTCTCGTAGGTTCTCATA 59.241 44.000 0.00 0.00 0.00 2.15
318 319 3.083122 TGGCTTAGTCTCTCGTAGGTT 57.917 47.619 0.00 0.00 0.00 3.50
323 324 1.961394 TGTGTTGGCTTAGTCTCTCGT 59.039 47.619 0.00 0.00 0.00 4.18
331 332 7.798596 ATCTTAAGATGATGTGTTGGCTTAG 57.201 36.000 17.26 0.00 32.68 2.18
332 333 8.579850 AAATCTTAAGATGATGTGTTGGCTTA 57.420 30.769 18.61 0.00 34.49 3.09
338 339 9.436957 ACTTCGTAAATCTTAAGATGATGTGTT 57.563 29.630 18.61 10.31 34.49 3.32
339 340 9.088512 GACTTCGTAAATCTTAAGATGATGTGT 57.911 33.333 18.61 15.52 34.49 3.72
351 352 6.145696 GCGCCTATAATGACTTCGTAAATCTT 59.854 38.462 0.00 0.00 0.00 2.40
357 358 2.889045 AGGCGCCTATAATGACTTCGTA 59.111 45.455 31.86 0.00 0.00 3.43
359 360 2.329379 GAGGCGCCTATAATGACTTCG 58.671 52.381 32.97 0.00 0.00 3.79
367 368 1.530013 GGCTACGGAGGCGCCTATAA 61.530 60.000 32.97 14.52 42.36 0.98
368 369 1.975407 GGCTACGGAGGCGCCTATA 60.975 63.158 32.97 20.66 42.36 1.31
379 380 1.620413 GACGTTTCGGTTGGCTACGG 61.620 60.000 0.00 0.42 36.60 4.02
383 384 1.301479 GGAGACGTTTCGGTTGGCT 60.301 57.895 0.00 0.00 0.00 4.75
387 388 0.748450 TGTGAGGAGACGTTTCGGTT 59.252 50.000 0.00 0.00 0.00 4.44
404 405 1.305219 CGGTGATGCCCGTTCATTGT 61.305 55.000 0.00 0.00 43.07 2.71
407 408 2.124736 CCGGTGATGCCCGTTCAT 60.125 61.111 0.00 0.00 46.66 2.57
414 415 2.044946 AGGCTTTCCGGTGATGCC 60.045 61.111 21.44 21.44 39.41 4.40
435 436 5.083533 TGCCCGCAATTTTCTGAATTTAT 57.916 34.783 0.00 0.00 0.00 1.40
441 442 1.543607 TGATGCCCGCAATTTTCTGA 58.456 45.000 0.00 0.00 0.00 3.27
458 459 1.289160 AGTCCTAGGCTTGGCATTGA 58.711 50.000 10.34 0.00 0.00 2.57
459 460 2.134789 AAGTCCTAGGCTTGGCATTG 57.865 50.000 15.11 0.00 0.00 2.82
464 465 4.459337 CCAAAGTTTAAGTCCTAGGCTTGG 59.541 45.833 21.66 8.84 0.00 3.61
465 466 4.459337 CCCAAAGTTTAAGTCCTAGGCTTG 59.541 45.833 21.66 9.14 0.00 4.01
471 472 4.042435 CAGTCCCCCAAAGTTTAAGTCCTA 59.958 45.833 0.00 0.00 0.00 2.94
477 478 3.691698 AACCAGTCCCCCAAAGTTTAA 57.308 42.857 0.00 0.00 0.00 1.52
483 484 0.105913 GTGGAAACCAGTCCCCCAAA 60.106 55.000 0.00 0.00 36.80 3.28
486 487 1.800229 ATGGTGGAAACCAGTCCCCC 61.800 60.000 3.68 0.00 43.86 5.40
489 490 4.878439 GTTTTTATGGTGGAAACCAGTCC 58.122 43.478 3.68 0.00 43.86 3.85
496 497 7.013834 AGATGGTTAGGTTTTTATGGTGGAAA 58.986 34.615 0.00 0.00 0.00 3.13
498 499 6.147437 AGATGGTTAGGTTTTTATGGTGGA 57.853 37.500 0.00 0.00 0.00 4.02
499 500 7.416326 GCTTAGATGGTTAGGTTTTTATGGTGG 60.416 40.741 0.00 0.00 0.00 4.61
500 501 7.339466 AGCTTAGATGGTTAGGTTTTTATGGTG 59.661 37.037 0.00 0.00 0.00 4.17
501 502 7.410991 AGCTTAGATGGTTAGGTTTTTATGGT 58.589 34.615 0.00 0.00 0.00 3.55
502 503 7.881775 AGCTTAGATGGTTAGGTTTTTATGG 57.118 36.000 0.00 0.00 0.00 2.74
504 505 8.999895 TCCTAGCTTAGATGGTTAGGTTTTTAT 58.000 33.333 0.00 0.00 38.33 1.40
519 524 4.037684 GTGGCGAACTAATCCTAGCTTAGA 59.962 45.833 14.04 0.00 31.89 2.10
522 527 2.500098 TGTGGCGAACTAATCCTAGCTT 59.500 45.455 0.00 0.00 0.00 3.74
530 535 6.919721 ACAAATTACAATGTGGCGAACTAAT 58.080 32.000 0.00 0.00 0.00 1.73
532 537 5.950758 ACAAATTACAATGTGGCGAACTA 57.049 34.783 0.00 0.00 0.00 2.24
564 569 9.797556 GTTTTCTTAAAGAACTACCACATGTTT 57.202 29.630 0.00 0.00 33.26 2.83
571 576 7.769970 TCTTTCGGTTTTCTTAAAGAACTACCA 59.230 33.333 2.39 0.00 38.28 3.25
573 578 9.992910 TTTCTTTCGGTTTTCTTAAAGAACTAC 57.007 29.630 8.23 2.25 43.76 2.73
585 590 8.108172 GTCTTTCATGTTTTTCTTTCGGTTTTC 58.892 33.333 0.00 0.00 0.00 2.29
591 596 9.611284 TCATATGTCTTTCATGTTTTTCTTTCG 57.389 29.630 1.90 0.00 37.91 3.46
609 614 4.950050 AGGGTCTCGTTGATTCATATGTC 58.050 43.478 1.90 0.00 0.00 3.06
660 665 2.917227 GTTGCAAGGTGGGGTGGG 60.917 66.667 0.00 0.00 0.00 4.61
663 668 2.521708 GCAGTTGCAAGGTGGGGT 60.522 61.111 0.00 0.00 41.59 4.95
721 744 8.360390 GCCGGATTTTCCATCTTATTATTTTCT 58.640 33.333 5.05 0.00 35.91 2.52
931 960 2.154798 CTCTGTTTGCGTCTCGGGGA 62.155 60.000 0.00 0.00 0.00 4.81
932 961 1.738099 CTCTGTTTGCGTCTCGGGG 60.738 63.158 0.00 0.00 0.00 5.73
933 962 1.738099 CCTCTGTTTGCGTCTCGGG 60.738 63.158 0.00 0.00 0.00 5.14
934 963 2.383527 GCCTCTGTTTGCGTCTCGG 61.384 63.158 0.00 0.00 0.00 4.63
935 964 1.664649 TGCCTCTGTTTGCGTCTCG 60.665 57.895 0.00 0.00 0.00 4.04
936 965 0.880278 TGTGCCTCTGTTTGCGTCTC 60.880 55.000 0.00 0.00 0.00 3.36
951 980 0.317020 GTTTCGTCACTTGGCTGTGC 60.317 55.000 6.38 0.00 37.81 4.57
952 981 0.307760 GGTTTCGTCACTTGGCTGTG 59.692 55.000 5.15 5.15 39.15 3.66
953 982 0.107410 TGGTTTCGTCACTTGGCTGT 60.107 50.000 0.00 0.00 0.00 4.40
955 984 1.134220 TCTTGGTTTCGTCACTTGGCT 60.134 47.619 0.00 0.00 0.00 4.75
956 985 1.305201 TCTTGGTTTCGTCACTTGGC 58.695 50.000 0.00 0.00 0.00 4.52
958 987 3.350912 CGTTTCTTGGTTTCGTCACTTG 58.649 45.455 0.00 0.00 0.00 3.16
969 998 3.894547 ATCGCCGGCGTTTCTTGGT 62.895 57.895 44.16 19.92 40.74 3.67
991 1020 2.289320 CCAGGATGTCCATCTCGAATCC 60.289 54.545 7.19 2.40 37.92 3.01
1152 1212 4.852138 TCGAAGATCCTTCGGTTATAACG 58.148 43.478 23.37 5.49 41.78 3.18
1158 1218 1.405661 GGCTTCGAAGATCCTTCGGTT 60.406 52.381 28.95 0.00 41.78 4.44
1159 1219 0.175989 GGCTTCGAAGATCCTTCGGT 59.824 55.000 28.95 0.00 41.78 4.69
1170 1230 0.536460 GGTCCACCAAAGGCTTCGAA 60.536 55.000 0.00 0.00 35.64 3.71
1236 1299 2.415010 CACGATCTCCAGCTCCCG 59.585 66.667 0.00 0.00 0.00 5.14
1353 1416 4.117661 GCCTCCTCGTCGTCGCTT 62.118 66.667 0.00 0.00 36.96 4.68
1362 1425 3.801068 ATCCTCCTCCGCCTCCTCG 62.801 68.421 0.00 0.00 0.00 4.63
1370 1439 3.688086 GATCCCGATCCTCCTCCG 58.312 66.667 0.00 0.00 31.76 4.63
1424 1496 1.490490 CCTCCCATTCGAAAGGATCCA 59.510 52.381 20.66 1.19 0.00 3.41
1671 1777 6.540551 GGAAACATTTTGCTTCCACCTAAAAA 59.459 34.615 5.10 0.00 41.14 1.94
1710 1818 1.065418 AGTGCAGGTTACATGGGCTAC 60.065 52.381 0.00 0.00 0.00 3.58
1716 1824 1.237533 TGTGCAGTGCAGGTTACATG 58.762 50.000 20.42 0.00 40.08 3.21
1722 1830 1.814394 CATTGTATGTGCAGTGCAGGT 59.186 47.619 20.42 12.70 40.08 4.00
1724 1832 3.564235 AACATTGTATGTGCAGTGCAG 57.436 42.857 20.42 6.62 44.07 4.41
1725 1833 4.297510 GAAAACATTGTATGTGCAGTGCA 58.702 39.130 15.37 15.37 44.07 4.57
1726 1834 3.361644 CGAAAACATTGTATGTGCAGTGC 59.638 43.478 8.58 8.58 44.07 4.40
1727 1835 4.536065 ACGAAAACATTGTATGTGCAGTG 58.464 39.130 0.00 0.00 44.07 3.66
1728 1836 4.320202 GGACGAAAACATTGTATGTGCAGT 60.320 41.667 0.00 0.00 44.07 4.40
1748 1856 1.064060 GCAGTAACCGATTGCATGGAC 59.936 52.381 7.11 0.00 40.42 4.02
1753 1861 1.305219 GCAGGCAGTAACCGATTGCA 61.305 55.000 0.00 0.00 42.43 4.08
1754 1862 1.429423 GCAGGCAGTAACCGATTGC 59.571 57.895 0.00 0.00 39.99 3.56
1760 1869 1.603455 TTGCAGGCAGGCAGTAACC 60.603 57.895 4.10 0.00 45.88 2.85
1765 1874 3.429141 CGAGTTGCAGGCAGGCAG 61.429 66.667 4.10 0.00 45.88 4.85
1769 1878 2.047465 AGCTCGAGTTGCAGGCAG 60.047 61.111 15.13 0.00 0.00 4.85
1773 1882 1.153667 GGAGGAGCTCGAGTTGCAG 60.154 63.158 21.90 0.00 0.00 4.41
1774 1883 2.973899 GGAGGAGCTCGAGTTGCA 59.026 61.111 21.90 0.00 0.00 4.08
1775 1884 2.202676 CGGAGGAGCTCGAGTTGC 60.203 66.667 15.13 13.96 0.00 4.17
1776 1885 2.202676 GCGGAGGAGCTCGAGTTG 60.203 66.667 15.13 0.00 0.00 3.16
1777 1886 2.361865 AGCGGAGGAGCTCGAGTT 60.362 61.111 15.13 8.18 45.67 3.01
1791 1901 2.459904 CGTCGTCAACGTTCAGCG 59.540 61.111 0.00 3.45 46.42 5.18
1812 1931 0.167908 GTGTTGGAAATCGCATCGCA 59.832 50.000 0.00 0.00 0.00 5.10
1813 1932 0.523335 GGTGTTGGAAATCGCATCGC 60.523 55.000 0.00 0.00 0.00 4.58
1814 1933 1.086696 AGGTGTTGGAAATCGCATCG 58.913 50.000 0.00 0.00 0.00 3.84
1815 1934 1.812571 ACAGGTGTTGGAAATCGCATC 59.187 47.619 0.00 0.00 0.00 3.91
1816 1935 1.909700 ACAGGTGTTGGAAATCGCAT 58.090 45.000 0.00 0.00 0.00 4.73
1878 2002 3.861886 GCTTTTGGCTACACTGGTACGTA 60.862 47.826 0.00 0.00 38.06 3.57
1977 2137 2.911332 AAACTTGCGTGTCGTCCCGT 62.911 55.000 0.00 0.00 0.00 5.28
2058 2261 0.827368 GGGAGAGTGCCGAGAAAGAT 59.173 55.000 0.00 0.00 0.00 2.40
2066 2269 1.379977 TAGTGGAGGGAGAGTGCCG 60.380 63.158 0.00 0.00 30.73 5.69
2076 2279 2.898705 CTTTGCTAGTGCTAGTGGAGG 58.101 52.381 7.90 0.00 40.48 4.30
2077 2280 2.275318 GCTTTGCTAGTGCTAGTGGAG 58.725 52.381 7.90 4.91 40.48 3.86
2078 2281 1.623311 TGCTTTGCTAGTGCTAGTGGA 59.377 47.619 7.90 0.00 40.48 4.02
2079 2282 2.005451 CTGCTTTGCTAGTGCTAGTGG 58.995 52.381 7.90 0.00 40.48 4.00
2080 2283 1.396301 GCTGCTTTGCTAGTGCTAGTG 59.604 52.381 7.90 0.00 40.48 2.74
2081 2284 1.002430 TGCTGCTTTGCTAGTGCTAGT 59.998 47.619 0.00 0.00 40.48 2.57
2082 2285 1.664659 CTGCTGCTTTGCTAGTGCTAG 59.335 52.381 0.00 2.04 40.48 3.42
2083 2286 1.730501 CTGCTGCTTTGCTAGTGCTA 58.269 50.000 0.00 0.00 40.48 3.49
2084 2287 1.584380 GCTGCTGCTTTGCTAGTGCT 61.584 55.000 8.53 0.00 36.79 4.40
2085 2288 1.154073 GCTGCTGCTTTGCTAGTGC 60.154 57.895 8.53 0.00 36.55 4.40
2109 2321 3.622163 GCTTGATTGATCACTCTGTCTGG 59.378 47.826 13.56 0.78 36.36 3.86
2110 2322 4.251268 TGCTTGATTGATCACTCTGTCTG 58.749 43.478 13.56 2.18 36.36 3.51
2111 2323 4.548451 TGCTTGATTGATCACTCTGTCT 57.452 40.909 13.56 0.00 36.36 3.41
2112 2324 4.142730 GGTTGCTTGATTGATCACTCTGTC 60.143 45.833 13.56 4.06 36.36 3.51
2173 2385 3.302347 GAGTCCTGTCCTGGCACGG 62.302 68.421 0.00 0.00 0.00 4.94
2226 2443 2.684881 CCATTACCACCATCAGCTTGAC 59.315 50.000 0.00 0.00 0.00 3.18
2227 2444 2.945440 GCCATTACCACCATCAGCTTGA 60.945 50.000 0.00 0.00 0.00 3.02
2228 2445 1.406539 GCCATTACCACCATCAGCTTG 59.593 52.381 0.00 0.00 0.00 4.01
2379 2678 2.728383 GAGTACGTGCGTGCGTGT 60.728 61.111 14.68 4.12 45.33 4.49
2380 2679 3.467119 GGAGTACGTGCGTGCGTG 61.467 66.667 14.68 0.00 45.33 5.34
2382 2681 3.909258 AAGGGAGTACGTGCGTGCG 62.909 63.158 7.55 0.00 35.88 5.34
2383 2682 2.048503 AAGGGAGTACGTGCGTGC 60.049 61.111 7.55 6.08 0.00 5.34
2384 2683 0.038526 AAGAAGGGAGTACGTGCGTG 60.039 55.000 7.55 0.00 0.00 5.34
2385 2684 0.677842 AAAGAAGGGAGTACGTGCGT 59.322 50.000 0.00 2.05 0.00 5.24
2386 2685 1.347320 GAAAGAAGGGAGTACGTGCG 58.653 55.000 0.00 0.00 0.00 5.34
2387 2686 1.723220 GGAAAGAAGGGAGTACGTGC 58.277 55.000 0.00 0.00 0.00 5.34
2388 2687 1.403780 CCGGAAAGAAGGGAGTACGTG 60.404 57.143 0.00 0.00 0.00 4.49
2389 2688 0.893447 CCGGAAAGAAGGGAGTACGT 59.107 55.000 0.00 0.00 0.00 3.57
2390 2689 0.893447 ACCGGAAAGAAGGGAGTACG 59.107 55.000 9.46 0.00 0.00 3.67
2391 2690 3.413846 AAACCGGAAAGAAGGGAGTAC 57.586 47.619 9.46 0.00 0.00 2.73
2392 2691 6.126968 CCTTATAAACCGGAAAGAAGGGAGTA 60.127 42.308 9.46 0.00 0.00 2.59
2393 2692 5.338953 CCTTATAAACCGGAAAGAAGGGAGT 60.339 44.000 9.46 0.00 0.00 3.85
2394 2693 5.123936 CCTTATAAACCGGAAAGAAGGGAG 58.876 45.833 9.46 0.00 0.00 4.30
2395 2694 4.627013 GCCTTATAAACCGGAAAGAAGGGA 60.627 45.833 21.65 0.00 33.94 4.20
2396 2695 3.630769 GCCTTATAAACCGGAAAGAAGGG 59.369 47.826 21.65 12.53 33.94 3.95
2397 2696 4.524053 AGCCTTATAAACCGGAAAGAAGG 58.476 43.478 9.46 15.69 35.99 3.46
2398 2697 7.336176 AGTTAAGCCTTATAAACCGGAAAGAAG 59.664 37.037 9.46 5.65 0.00 2.85
2399 2698 7.170277 AGTTAAGCCTTATAAACCGGAAAGAA 58.830 34.615 9.46 0.00 0.00 2.52
2400 2699 6.714278 AGTTAAGCCTTATAAACCGGAAAGA 58.286 36.000 9.46 0.00 0.00 2.52
2401 2700 6.997239 AGTTAAGCCTTATAAACCGGAAAG 57.003 37.500 9.46 3.38 0.00 2.62
2402 2701 8.860780 TTAAGTTAAGCCTTATAAACCGGAAA 57.139 30.769 9.46 0.00 0.00 3.13
2403 2702 8.860780 TTTAAGTTAAGCCTTATAAACCGGAA 57.139 30.769 9.46 0.00 0.00 4.30
2404 2703 8.860780 TTTTAAGTTAAGCCTTATAAACCGGA 57.139 30.769 9.46 0.00 0.00 5.14
2412 2711 9.528489 TGGTGAGATTTTTAAGTTAAGCCTTAT 57.472 29.630 0.00 0.00 0.00 1.73
2413 2712 8.927675 TGGTGAGATTTTTAAGTTAAGCCTTA 57.072 30.769 0.00 0.00 0.00 2.69
2414 2713 7.833285 TGGTGAGATTTTTAAGTTAAGCCTT 57.167 32.000 0.00 0.00 0.00 4.35
2415 2714 7.255836 GGTTGGTGAGATTTTTAAGTTAAGCCT 60.256 37.037 0.00 0.00 0.00 4.58
2416 2715 6.866770 GGTTGGTGAGATTTTTAAGTTAAGCC 59.133 38.462 0.00 0.00 0.00 4.35
2417 2716 7.430441 TGGTTGGTGAGATTTTTAAGTTAAGC 58.570 34.615 0.00 0.00 0.00 3.09
2418 2717 9.463443 CTTGGTTGGTGAGATTTTTAAGTTAAG 57.537 33.333 0.00 0.00 0.00 1.85
2419 2718 9.191479 TCTTGGTTGGTGAGATTTTTAAGTTAA 57.809 29.630 0.00 0.00 0.00 2.01
2420 2719 8.754991 TCTTGGTTGGTGAGATTTTTAAGTTA 57.245 30.769 0.00 0.00 0.00 2.24
2421 2720 7.654022 TCTTGGTTGGTGAGATTTTTAAGTT 57.346 32.000 0.00 0.00 0.00 2.66
2422 2721 7.839680 ATCTTGGTTGGTGAGATTTTTAAGT 57.160 32.000 0.00 0.00 0.00 2.24
2423 2722 9.231297 TCTATCTTGGTTGGTGAGATTTTTAAG 57.769 33.333 0.00 0.00 32.68 1.85
2424 2723 9.753674 ATCTATCTTGGTTGGTGAGATTTTTAA 57.246 29.630 0.00 0.00 32.68 1.52
2425 2724 9.177608 CATCTATCTTGGTTGGTGAGATTTTTA 57.822 33.333 0.00 0.00 32.68 1.52
2426 2725 7.123247 CCATCTATCTTGGTTGGTGAGATTTTT 59.877 37.037 0.00 0.00 32.68 1.94
2427 2726 6.604795 CCATCTATCTTGGTTGGTGAGATTTT 59.395 38.462 0.00 0.00 32.68 1.82
2428 2727 6.125029 CCATCTATCTTGGTTGGTGAGATTT 58.875 40.000 0.00 0.00 32.68 2.17
2429 2728 5.192522 ACCATCTATCTTGGTTGGTGAGATT 59.807 40.000 0.00 0.00 45.19 2.40
2430 2729 4.723789 ACCATCTATCTTGGTTGGTGAGAT 59.276 41.667 0.00 0.00 45.19 2.75
2431 2730 4.104086 ACCATCTATCTTGGTTGGTGAGA 58.896 43.478 0.00 0.00 45.19 3.27
2432 2731 4.494091 ACCATCTATCTTGGTTGGTGAG 57.506 45.455 0.00 0.00 45.19 3.51
2435 2734 3.846588 ACTCACCATCTATCTTGGTTGGT 59.153 43.478 0.00 0.00 45.19 3.67
2436 2735 4.194640 CACTCACCATCTATCTTGGTTGG 58.805 47.826 0.00 0.00 45.19 3.77
2437 2736 4.194640 CCACTCACCATCTATCTTGGTTG 58.805 47.826 0.00 0.00 45.19 3.77
2438 2737 3.846588 ACCACTCACCATCTATCTTGGTT 59.153 43.478 0.00 0.00 45.19 3.67
2440 2739 3.432749 CCACCACTCACCATCTATCTTGG 60.433 52.174 0.00 0.00 40.26 3.61
2441 2740 3.452264 TCCACCACTCACCATCTATCTTG 59.548 47.826 0.00 0.00 0.00 3.02
2442 2741 3.724478 TCCACCACTCACCATCTATCTT 58.276 45.455 0.00 0.00 0.00 2.40
2443 2742 3.404869 TCCACCACTCACCATCTATCT 57.595 47.619 0.00 0.00 0.00 1.98
2444 2743 4.696479 ATTCCACCACTCACCATCTATC 57.304 45.455 0.00 0.00 0.00 2.08
2445 2744 5.219739 AGTATTCCACCACTCACCATCTAT 58.780 41.667 0.00 0.00 0.00 1.98
2446 2745 4.620723 AGTATTCCACCACTCACCATCTA 58.379 43.478 0.00 0.00 0.00 1.98
2447 2746 3.454858 AGTATTCCACCACTCACCATCT 58.545 45.455 0.00 0.00 0.00 2.90
2448 2747 3.914426 AGTATTCCACCACTCACCATC 57.086 47.619 0.00 0.00 0.00 3.51
2449 2748 4.657814 AAAGTATTCCACCACTCACCAT 57.342 40.909 0.00 0.00 0.00 3.55
2450 2749 4.447138 AAAAGTATTCCACCACTCACCA 57.553 40.909 0.00 0.00 0.00 4.17
2451 2750 4.583073 ACAAAAAGTATTCCACCACTCACC 59.417 41.667 0.00 0.00 0.00 4.02
2452 2751 5.767816 ACAAAAAGTATTCCACCACTCAC 57.232 39.130 0.00 0.00 0.00 3.51
2453 2752 6.597562 ACTACAAAAAGTATTCCACCACTCA 58.402 36.000 0.00 0.00 30.93 3.41
2454 2753 7.506328 AACTACAAAAAGTATTCCACCACTC 57.494 36.000 0.00 0.00 30.93 3.51
2455 2754 7.683463 GCAAACTACAAAAAGTATTCCACCACT 60.683 37.037 0.00 0.00 30.93 4.00
2456 2755 6.419710 GCAAACTACAAAAAGTATTCCACCAC 59.580 38.462 0.00 0.00 30.93 4.16
2457 2756 6.096987 TGCAAACTACAAAAAGTATTCCACCA 59.903 34.615 0.00 0.00 30.93 4.17
2458 2757 6.508777 TGCAAACTACAAAAAGTATTCCACC 58.491 36.000 0.00 0.00 30.93 4.61
2459 2758 7.995463 TTGCAAACTACAAAAAGTATTCCAC 57.005 32.000 0.00 0.00 30.93 4.02
2460 2759 9.436957 TTTTTGCAAACTACAAAAAGTATTCCA 57.563 25.926 12.39 0.00 46.52 3.53
2474 2773 9.875675 GCATTAATTGAATGTTTTTGCAAACTA 57.124 25.926 12.39 0.00 45.88 2.24
2475 2774 8.623030 AGCATTAATTGAATGTTTTTGCAAACT 58.377 25.926 12.39 0.00 45.88 2.66
2476 2775 8.785468 AGCATTAATTGAATGTTTTTGCAAAC 57.215 26.923 12.39 2.38 45.88 2.93
2477 2776 8.838365 AGAGCATTAATTGAATGTTTTTGCAAA 58.162 25.926 8.05 8.05 45.88 3.68
2478 2777 8.380743 AGAGCATTAATTGAATGTTTTTGCAA 57.619 26.923 0.00 0.00 45.88 4.08
2479 2778 7.966246 AGAGCATTAATTGAATGTTTTTGCA 57.034 28.000 0.00 0.00 45.88 4.08
2544 2843 7.738345 CATGTAATTTATGCATGCATGGATTG 58.262 34.615 37.43 21.22 43.67 2.67
2545 2844 7.899178 CATGTAATTTATGCATGCATGGATT 57.101 32.000 37.43 32.81 43.67 3.01
2559 2858 9.941325 AGAAAATTGACCAATGCATGTAATTTA 57.059 25.926 0.00 0.00 31.07 1.40
2560 2859 8.851541 AGAAAATTGACCAATGCATGTAATTT 57.148 26.923 0.00 6.84 31.84 1.82
2561 2860 8.316214 AGAGAAAATTGACCAATGCATGTAATT 58.684 29.630 0.00 0.83 0.00 1.40
2562 2861 7.844009 AGAGAAAATTGACCAATGCATGTAAT 58.156 30.769 0.00 0.00 0.00 1.89
2563 2862 7.230849 AGAGAAAATTGACCAATGCATGTAA 57.769 32.000 0.00 0.00 0.00 2.41
2564 2863 6.839124 AGAGAAAATTGACCAATGCATGTA 57.161 33.333 0.00 0.00 0.00 2.29
2565 2864 5.733620 AGAGAAAATTGACCAATGCATGT 57.266 34.783 0.00 0.00 0.00 3.21
2566 2865 8.712285 ATTAAGAGAAAATTGACCAATGCATG 57.288 30.769 0.00 0.00 0.00 4.06
2567 2866 9.807649 GTATTAAGAGAAAATTGACCAATGCAT 57.192 29.630 0.00 0.00 0.00 3.96
2568 2867 9.023962 AGTATTAAGAGAAAATTGACCAATGCA 57.976 29.630 0.00 0.00 0.00 3.96
2569 2868 9.860898 AAGTATTAAGAGAAAATTGACCAATGC 57.139 29.630 0.00 0.00 0.00 3.56
2571 2870 9.860898 GCAAGTATTAAGAGAAAATTGACCAAT 57.139 29.630 0.00 0.00 0.00 3.16
2572 2871 8.855110 TGCAAGTATTAAGAGAAAATTGACCAA 58.145 29.630 0.00 0.00 0.00 3.67
2573 2872 8.402798 TGCAAGTATTAAGAGAAAATTGACCA 57.597 30.769 0.00 0.00 0.00 4.02
2574 2873 9.294030 CATGCAAGTATTAAGAGAAAATTGACC 57.706 33.333 0.00 0.00 0.00 4.02
2575 2874 8.801913 GCATGCAAGTATTAAGAGAAAATTGAC 58.198 33.333 14.21 0.00 0.00 3.18
2576 2875 8.522003 TGCATGCAAGTATTAAGAGAAAATTGA 58.478 29.630 20.30 0.00 0.00 2.57
2577 2876 8.692110 TGCATGCAAGTATTAAGAGAAAATTG 57.308 30.769 20.30 0.00 0.00 2.32
2578 2877 9.880157 ATTGCATGCAAGTATTAAGAGAAAATT 57.120 25.926 34.15 11.77 39.47 1.82
2579 2878 9.309516 CATTGCATGCAAGTATTAAGAGAAAAT 57.690 29.630 34.15 12.14 39.47 1.82
2580 2879 8.522003 TCATTGCATGCAAGTATTAAGAGAAAA 58.478 29.630 34.15 9.52 39.47 2.29
2581 2880 8.054152 TCATTGCATGCAAGTATTAAGAGAAA 57.946 30.769 34.15 10.19 39.47 2.52
2582 2881 7.628769 TCATTGCATGCAAGTATTAAGAGAA 57.371 32.000 34.15 10.64 39.47 2.87
2583 2882 7.812690 ATCATTGCATGCAAGTATTAAGAGA 57.187 32.000 34.15 20.12 39.47 3.10
2584 2883 8.867112 AAATCATTGCATGCAAGTATTAAGAG 57.133 30.769 34.15 16.39 39.47 2.85
2588 2887 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
2589 2888 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
2590 2889 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
2591 2890 6.338937 TGCATTAAATCATTGCATGCAAGTA 58.661 32.000 34.15 25.25 40.64 2.24
2592 2891 5.179533 TGCATTAAATCATTGCATGCAAGT 58.820 33.333 34.15 21.32 40.64 3.16
2593 2892 5.726729 TGCATTAAATCATTGCATGCAAG 57.273 34.783 34.15 25.40 40.64 4.01
2600 2899 9.042008 AGATTTCAAGATGCATTAAATCATTGC 57.958 29.630 24.27 10.16 38.45 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.