Multiple sequence alignment - TraesCS7A01G160000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G160000 chr7A 100.000 4011 0 0 1 4011 116116808 116112798 0.000000e+00 7408
1 TraesCS7A01G160000 chr7A 90.659 182 12 2 356 537 116116288 116116112 1.860000e-58 237
2 TraesCS7A01G160000 chr7A 90.659 182 12 2 521 697 116116453 116116272 1.860000e-58 237
3 TraesCS7A01G160000 chr7B 96.437 3480 93 14 521 3985 70483776 70480313 0.000000e+00 5710
4 TraesCS7A01G160000 chr7B 88.976 508 28 15 36 539 70484085 70483602 1.590000e-168 603
5 TraesCS7A01G160000 chr7D 94.755 3165 106 20 704 3858 111049960 111046846 0.000000e+00 4870
6 TraesCS7A01G160000 chr7D 89.316 468 36 8 2 465 111050416 111049959 3.480000e-160 575
7 TraesCS7A01G160000 chr7D 96.552 87 2 1 3887 3972 111046846 111046760 4.180000e-30 143
8 TraesCS7A01G160000 chr4D 94.634 3168 101 21 704 3861 9318973 9315865 0.000000e+00 4844
9 TraesCS7A01G160000 chr4D 89.829 1111 55 16 2757 3858 9324469 9325530 0.000000e+00 1373
10 TraesCS7A01G160000 chr4D 89.530 468 35 8 2 465 9319429 9318972 7.470000e-162 580
11 TraesCS7A01G160000 chr4D 92.627 217 6 2 3642 3858 9329942 9330148 1.810000e-78 303
12 TraesCS7A01G160000 chr4D 97.701 87 1 1 3887 3972 9315868 9315782 8.980000e-32 148
13 TraesCS7A01G160000 chr4D 97.701 87 1 1 3887 3972 9325530 9325616 8.980000e-32 148
14 TraesCS7A01G160000 chr4D 97.701 87 1 1 3887 3972 9330148 9330234 8.980000e-32 148
15 TraesCS7A01G160000 chr5A 90.850 2776 192 35 661 3409 26157197 26154457 0.000000e+00 3663
16 TraesCS7A01G160000 chr5A 92.116 1243 74 17 681 1917 545973639 545974863 0.000000e+00 1731
17 TraesCS7A01G160000 chr5A 91.043 1083 59 6 1992 3073 545981317 545982362 0.000000e+00 1428
18 TraesCS7A01G160000 chr5A 82.805 221 31 5 37 256 545973178 545973392 1.470000e-44 191
19 TraesCS7A01G160000 chr5D 92.373 2583 152 29 857 3416 37194217 37191657 0.000000e+00 3637
20 TraesCS7A01G160000 chr5D 90.606 1171 104 4 1886 3055 430442231 430443396 0.000000e+00 1548
21 TraesCS7A01G160000 chr5D 87.006 1393 125 32 458 1843 430440885 430442228 0.000000e+00 1519
22 TraesCS7A01G160000 chr5B 89.430 1088 109 4 1958 3044 519642192 519643274 0.000000e+00 1367
23 TraesCS7A01G160000 chr5B 85.079 1079 103 34 458 1529 519614265 519615292 0.000000e+00 1048
24 TraesCS7A01G160000 chr5B 91.494 435 36 1 1526 1960 519628316 519628749 7.420000e-167 597
25 TraesCS7A01G160000 chr3D 86.494 770 99 5 1172 1938 580546711 580547478 0.000000e+00 841


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G160000 chr7A 116112798 116116808 4010 True 2627.333333 7408 93.772667 1 4011 3 chr7A.!!$R1 4010
1 TraesCS7A01G160000 chr7B 70480313 70484085 3772 True 3156.500000 5710 92.706500 36 3985 2 chr7B.!!$R1 3949
2 TraesCS7A01G160000 chr7D 111046760 111050416 3656 True 1862.666667 4870 93.541000 2 3972 3 chr7D.!!$R1 3970
3 TraesCS7A01G160000 chr4D 9315782 9319429 3647 True 1857.333333 4844 93.955000 2 3972 3 chr4D.!!$R1 3970
4 TraesCS7A01G160000 chr4D 9324469 9325616 1147 False 760.500000 1373 93.765000 2757 3972 2 chr4D.!!$F1 1215
5 TraesCS7A01G160000 chr5A 26154457 26157197 2740 True 3663.000000 3663 90.850000 661 3409 1 chr5A.!!$R1 2748
6 TraesCS7A01G160000 chr5A 545981317 545982362 1045 False 1428.000000 1428 91.043000 1992 3073 1 chr5A.!!$F1 1081
7 TraesCS7A01G160000 chr5A 545973178 545974863 1685 False 961.000000 1731 87.460500 37 1917 2 chr5A.!!$F2 1880
8 TraesCS7A01G160000 chr5D 37191657 37194217 2560 True 3637.000000 3637 92.373000 857 3416 1 chr5D.!!$R1 2559
9 TraesCS7A01G160000 chr5D 430440885 430443396 2511 False 1533.500000 1548 88.806000 458 3055 2 chr5D.!!$F1 2597
10 TraesCS7A01G160000 chr5B 519642192 519643274 1082 False 1367.000000 1367 89.430000 1958 3044 1 chr5B.!!$F3 1086
11 TraesCS7A01G160000 chr5B 519614265 519615292 1027 False 1048.000000 1048 85.079000 458 1529 1 chr5B.!!$F1 1071
12 TraesCS7A01G160000 chr3D 580546711 580547478 767 False 841.000000 841 86.494000 1172 1938 1 chr3D.!!$F1 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.038159 GGAAGATAGGCGATGGTCGG 60.038 60.0 1.29 0.00 40.84 4.79 F
480 519 0.106719 CTGGTTGTGACCCCAACTGT 60.107 55.0 4.29 0.00 45.92 3.55 F
505 544 0.386476 CTTGTGCTTGAAGCCTTGCA 59.614 50.0 15.43 5.79 41.51 4.08 F
1401 1473 0.179086 GCCTGAAGGTAGCTGCTCTC 60.179 60.0 4.91 0.29 37.57 3.20 F
1731 1804 0.173481 TGTGCAGTATCACCGCTCTC 59.827 55.0 0.00 0.00 36.17 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1470 0.170339 CAGTACACATGCGACCGAGA 59.830 55.000 0.00 0.0 0.00 4.04 R
1401 1473 0.713883 GAACAGTACACATGCGACCG 59.286 55.000 0.00 0.0 0.00 4.79 R
1668 1741 0.988145 AAGGCCGATCAAGGATCCCA 60.988 55.000 8.55 0.0 35.83 4.37 R
2550 2626 1.203523 CGGCTCTCTGCAGTACTCTTT 59.796 52.381 14.67 0.0 45.15 2.52 R
3569 3692 1.603678 GGACCAAGCGTCGTAACAGAA 60.604 52.381 0.00 0.0 42.99 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.038159 GGAAGATAGGCGATGGTCGG 60.038 60.000 1.29 0.00 40.84 4.79
65 66 4.445452 TTTCTGATTGATTCAAGGCTGC 57.555 40.909 5.21 0.00 32.78 5.25
79 80 1.221021 GCTGCCCGGCTAGTTTAGT 59.779 57.895 11.61 0.00 0.00 2.24
156 158 9.436957 CTTCTGCTGTCTTCCTACTTTTATTTA 57.563 33.333 0.00 0.00 0.00 1.40
182 187 6.533723 TGCTAGTTTTGTAGTACAATCCATCG 59.466 38.462 16.26 5.69 38.00 3.84
319 358 0.325933 TCTGGTCTGATGCAACTGGG 59.674 55.000 0.00 0.00 0.00 4.45
327 366 3.524014 TGCAACTGGGCACACTTG 58.476 55.556 4.14 4.14 39.25 3.16
328 367 1.379710 TGCAACTGGGCACACTTGT 60.380 52.632 9.65 0.00 39.25 3.16
330 369 1.735360 CAACTGGGCACACTTGTGG 59.265 57.895 11.27 0.00 45.72 4.17
331 370 1.037030 CAACTGGGCACACTTGTGGT 61.037 55.000 11.27 0.00 45.72 4.16
333 372 0.751643 ACTGGGCACACTTGTGGTTC 60.752 55.000 11.27 0.00 45.72 3.62
334 373 0.751277 CTGGGCACACTTGTGGTTCA 60.751 55.000 11.27 0.00 45.72 3.18
335 374 0.323816 TGGGCACACTTGTGGTTCAA 60.324 50.000 11.27 0.00 45.72 2.69
353 392 8.915654 GTGGTTCAATTCAACTATTTTTAGCTG 58.084 33.333 0.00 0.00 0.00 4.24
355 394 7.063426 GGTTCAATTCAACTATTTTTAGCTGCC 59.937 37.037 0.00 0.00 0.00 4.85
356 395 7.225784 TCAATTCAACTATTTTTAGCTGCCA 57.774 32.000 0.00 0.00 0.00 4.92
358 397 7.598493 TCAATTCAACTATTTTTAGCTGCCAAC 59.402 33.333 0.00 0.00 0.00 3.77
367 406 5.337578 TTTTAGCTGCCAACAAAGAAACT 57.662 34.783 0.00 0.00 0.00 2.66
370 409 1.538849 GCTGCCAACAAAGAAACTGGG 60.539 52.381 0.00 0.00 0.00 4.45
371 410 1.069049 CTGCCAACAAAGAAACTGGGG 59.931 52.381 0.00 0.00 0.00 4.96
405 444 6.407074 GCTGGTATCTAGGTGTGTAGATGTTT 60.407 42.308 4.04 0.00 39.61 2.83
406 445 7.108841 TGGTATCTAGGTGTGTAGATGTTTC 57.891 40.000 4.04 0.00 39.61 2.78
432 471 6.470557 TTTTCCTTTCGTATAAGAACGGTG 57.529 37.500 18.82 4.29 43.05 4.94
433 472 4.789012 TCCTTTCGTATAAGAACGGTGT 57.211 40.909 18.82 0.00 43.05 4.16
434 473 4.487948 TCCTTTCGTATAAGAACGGTGTG 58.512 43.478 18.82 0.20 43.05 3.82
435 474 3.061697 CCTTTCGTATAAGAACGGTGTGC 59.938 47.826 13.56 0.00 43.05 4.57
436 475 3.300852 TTCGTATAAGAACGGTGTGCA 57.699 42.857 0.00 0.00 43.05 4.57
437 476 3.513680 TCGTATAAGAACGGTGTGCAT 57.486 42.857 0.00 0.00 43.05 3.96
438 477 3.183754 TCGTATAAGAACGGTGTGCATG 58.816 45.455 0.00 0.00 43.05 4.06
439 478 2.927477 CGTATAAGAACGGTGTGCATGT 59.073 45.455 0.00 0.00 39.19 3.21
440 479 3.369756 CGTATAAGAACGGTGTGCATGTT 59.630 43.478 0.00 0.00 39.19 2.71
441 480 4.142988 CGTATAAGAACGGTGTGCATGTTT 60.143 41.667 0.00 0.00 39.19 2.83
442 481 5.062433 CGTATAAGAACGGTGTGCATGTTTA 59.938 40.000 0.00 0.00 39.19 2.01
443 482 5.950758 ATAAGAACGGTGTGCATGTTTAA 57.049 34.783 0.00 0.00 0.00 1.52
444 483 3.896648 AGAACGGTGTGCATGTTTAAG 57.103 42.857 0.00 0.00 0.00 1.85
445 484 2.552315 AGAACGGTGTGCATGTTTAAGG 59.448 45.455 0.00 0.00 0.00 2.69
446 485 0.596082 ACGGTGTGCATGTTTAAGGC 59.404 50.000 0.00 0.00 0.00 4.35
447 486 0.109319 CGGTGTGCATGTTTAAGGCC 60.109 55.000 0.00 0.00 0.00 5.19
448 487 0.246360 GGTGTGCATGTTTAAGGCCC 59.754 55.000 0.00 0.00 0.00 5.80
449 488 1.256812 GTGTGCATGTTTAAGGCCCT 58.743 50.000 0.00 0.00 0.00 5.19
450 489 1.067635 GTGTGCATGTTTAAGGCCCTG 60.068 52.381 0.00 0.00 0.00 4.45
451 490 1.202989 TGTGCATGTTTAAGGCCCTGA 60.203 47.619 0.00 0.00 0.00 3.86
452 491 1.202348 GTGCATGTTTAAGGCCCTGAC 59.798 52.381 0.00 0.00 0.00 3.51
455 494 2.094545 GCATGTTTAAGGCCCTGACTTG 60.095 50.000 0.00 3.52 31.11 3.16
466 505 1.059913 CCTGACTTGGTCTCCTGGTT 58.940 55.000 0.00 0.00 33.15 3.67
467 506 1.271054 CCTGACTTGGTCTCCTGGTTG 60.271 57.143 0.00 0.00 33.15 3.77
468 507 1.417890 CTGACTTGGTCTCCTGGTTGT 59.582 52.381 0.00 0.00 33.15 3.32
469 508 1.140852 TGACTTGGTCTCCTGGTTGTG 59.859 52.381 0.00 0.00 33.15 3.33
470 509 1.416401 GACTTGGTCTCCTGGTTGTGA 59.584 52.381 0.00 0.00 0.00 3.58
471 510 1.141053 ACTTGGTCTCCTGGTTGTGAC 59.859 52.381 0.00 0.00 0.00 3.67
472 511 0.472471 TTGGTCTCCTGGTTGTGACC 59.528 55.000 17.26 17.26 46.53 4.02
473 512 1.375326 GGTCTCCTGGTTGTGACCC 59.625 63.158 14.89 0.00 45.92 4.46
480 519 0.106719 CTGGTTGTGACCCCAACTGT 60.107 55.000 4.29 0.00 45.92 3.55
485 524 3.639561 GGTTGTGACCCCAACTGTTTATT 59.360 43.478 4.29 0.00 43.36 1.40
495 534 4.984161 CCCAACTGTTTATTCTTGTGCTTG 59.016 41.667 0.00 0.00 0.00 4.01
498 537 6.418819 CCAACTGTTTATTCTTGTGCTTGAAG 59.581 38.462 0.00 0.00 0.00 3.02
499 538 5.523369 ACTGTTTATTCTTGTGCTTGAAGC 58.477 37.500 10.84 10.84 42.82 3.86
500 539 4.870363 TGTTTATTCTTGTGCTTGAAGCC 58.130 39.130 15.43 6.71 41.51 4.35
501 540 4.584325 TGTTTATTCTTGTGCTTGAAGCCT 59.416 37.500 15.43 0.00 41.51 4.58
502 541 5.068987 TGTTTATTCTTGTGCTTGAAGCCTT 59.931 36.000 15.43 0.00 41.51 4.35
503 542 3.655276 ATTCTTGTGCTTGAAGCCTTG 57.345 42.857 15.43 2.67 41.51 3.61
504 543 0.670162 TCTTGTGCTTGAAGCCTTGC 59.330 50.000 15.43 3.16 41.51 4.01
505 544 0.386476 CTTGTGCTTGAAGCCTTGCA 59.614 50.000 15.43 5.79 41.51 4.08
510 549 1.814394 TGCTTGAAGCCTTGCACTATG 59.186 47.619 15.43 0.00 41.51 2.23
513 552 3.829948 CTTGAAGCCTTGCACTATGTTG 58.170 45.455 0.00 0.00 0.00 3.33
517 556 2.162681 AGCCTTGCACTATGTTGAACC 58.837 47.619 0.00 0.00 0.00 3.62
518 557 1.885887 GCCTTGCACTATGTTGAACCA 59.114 47.619 0.00 0.00 0.00 3.67
519 558 2.493278 GCCTTGCACTATGTTGAACCAT 59.507 45.455 0.00 0.00 0.00 3.55
617 667 4.095036 GCATGTTTAAGGTCCTGACTTAGC 59.905 45.833 0.00 0.00 32.52 3.09
649 699 6.045072 TGTGACCCCTACTGTTTATACTTG 57.955 41.667 0.00 0.00 0.00 3.16
650 700 5.544948 TGTGACCCCTACTGTTTATACTTGT 59.455 40.000 0.00 0.00 0.00 3.16
651 701 5.873164 GTGACCCCTACTGTTTATACTTGTG 59.127 44.000 0.00 0.00 0.00 3.33
656 706 6.170506 CCCTACTGTTTATACTTGTGCTTGA 58.829 40.000 0.00 0.00 0.00 3.02
657 707 6.653320 CCCTACTGTTTATACTTGTGCTTGAA 59.347 38.462 0.00 0.00 0.00 2.69
658 708 7.148407 CCCTACTGTTTATACTTGTGCTTGAAG 60.148 40.741 0.00 0.00 0.00 3.02
659 709 6.002062 ACTGTTTATACTTGTGCTTGAAGC 57.998 37.500 10.84 10.84 42.82 3.86
660 710 5.048713 ACTGTTTATACTTGTGCTTGAAGCC 60.049 40.000 15.43 6.71 41.51 4.35
661 711 5.070001 TGTTTATACTTGTGCTTGAAGCCT 58.930 37.500 15.43 0.00 41.51 4.58
662 712 5.534654 TGTTTATACTTGTGCTTGAAGCCTT 59.465 36.000 15.43 0.00 41.51 4.35
694 744 4.681744 TGAACCATCAACAAAGAAACTGC 58.318 39.130 0.00 0.00 30.99 4.40
725 775 5.591067 CCGGCCCTTTTGTCTTATGTATTTA 59.409 40.000 0.00 0.00 0.00 1.40
756 806 5.258051 TCAAAGGTTTCCTTGTGTGTAACT 58.742 37.500 1.62 0.00 43.92 2.24
757 807 6.416415 TCAAAGGTTTCCTTGTGTGTAACTA 58.584 36.000 1.62 0.00 43.92 2.24
758 808 6.316890 TCAAAGGTTTCCTTGTGTGTAACTAC 59.683 38.462 1.62 0.00 43.92 2.73
759 809 5.625568 AGGTTTCCTTGTGTGTAACTACT 57.374 39.130 0.00 0.00 38.04 2.57
760 810 6.736110 AGGTTTCCTTGTGTGTAACTACTA 57.264 37.500 0.00 0.00 38.04 1.82
761 811 7.128234 AGGTTTCCTTGTGTGTAACTACTAA 57.872 36.000 0.00 0.00 38.04 2.24
762 812 6.988580 AGGTTTCCTTGTGTGTAACTACTAAC 59.011 38.462 0.00 0.00 38.04 2.34
820 870 7.950512 AGAGTCTTCACATGATTACAGATAGG 58.049 38.462 0.00 0.00 0.00 2.57
862 916 3.580458 GCTAGATTTCTCCCTGGCTATGA 59.420 47.826 0.00 0.00 34.60 2.15
893 948 4.914312 ATTGTGATTTCTTGCATTTGCG 57.086 36.364 0.00 0.00 45.83 4.85
898 953 4.321745 GTGATTTCTTGCATTTGCGTGTAG 59.678 41.667 0.00 0.00 45.83 2.74
899 959 4.215185 TGATTTCTTGCATTTGCGTGTAGA 59.785 37.500 0.00 0.00 45.83 2.59
957 1018 5.795972 TGCATTGGATTGACATGACATTTT 58.204 33.333 0.00 0.00 0.00 1.82
973 1038 8.908678 CATGACATTTTGTTTGTATCACAAGAG 58.091 33.333 0.00 0.00 39.53 2.85
1023 1090 8.218338 AGATGGTGCAGTATAATTTCAAGAAG 57.782 34.615 0.00 0.00 0.00 2.85
1281 1349 8.547967 TCTACAACAAGGATCATTACAAACTC 57.452 34.615 0.00 0.00 0.00 3.01
1398 1470 1.197430 AGTGCCTGAAGGTAGCTGCT 61.197 55.000 7.57 7.57 37.57 4.24
1401 1473 0.179086 GCCTGAAGGTAGCTGCTCTC 60.179 60.000 4.91 0.29 37.57 3.20
1731 1804 0.173481 TGTGCAGTATCACCGCTCTC 59.827 55.000 0.00 0.00 36.17 3.20
1905 1978 3.022406 GCTTGATGGGCTTTCTGAAGAT 58.978 45.455 0.00 0.00 34.71 2.40
1917 1990 5.583854 GCTTTCTGAAGATGACATGAAGCTA 59.416 40.000 0.00 0.00 34.91 3.32
2664 2740 0.618458 TGGGTGTTGATCCTACTGCC 59.382 55.000 0.00 0.00 0.00 4.85
3046 3128 0.603439 TTGCTGCTTGCGATCACTCA 60.603 50.000 0.00 0.00 46.63 3.41
3047 3129 0.392060 TGCTGCTTGCGATCACTCAT 60.392 50.000 0.00 0.00 46.63 2.90
3057 3139 2.932622 GCGATCACTCATTCAGGTGTGT 60.933 50.000 0.00 0.00 35.26 3.72
3098 3180 6.400568 TGGTTATTCTTCCACCTAGTTAACG 58.599 40.000 0.00 0.00 0.00 3.18
3105 3187 7.001099 TCTTCCACCTAGTTAACGAATCTTT 57.999 36.000 0.00 0.00 0.00 2.52
3106 3188 7.095270 TCTTCCACCTAGTTAACGAATCTTTC 58.905 38.462 0.00 0.00 0.00 2.62
3107 3189 6.600882 TCCACCTAGTTAACGAATCTTTCT 57.399 37.500 0.00 0.00 0.00 2.52
3108 3190 6.628185 TCCACCTAGTTAACGAATCTTTCTC 58.372 40.000 0.00 0.00 0.00 2.87
3109 3191 5.811100 CCACCTAGTTAACGAATCTTTCTCC 59.189 44.000 0.00 0.00 0.00 3.71
3110 3192 5.811100 CACCTAGTTAACGAATCTTTCTCCC 59.189 44.000 0.00 0.00 0.00 4.30
3111 3193 5.041940 CCTAGTTAACGAATCTTTCTCCCG 58.958 45.833 0.00 0.00 0.00 5.14
3112 3194 4.532314 AGTTAACGAATCTTTCTCCCGT 57.468 40.909 0.00 0.00 34.74 5.28
3113 3195 5.649782 AGTTAACGAATCTTTCTCCCGTA 57.350 39.130 0.00 0.00 32.81 4.02
3114 3196 6.218108 AGTTAACGAATCTTTCTCCCGTAT 57.782 37.500 0.00 0.00 32.81 3.06
3115 3197 6.040878 AGTTAACGAATCTTTCTCCCGTATG 58.959 40.000 0.00 0.00 32.81 2.39
3116 3198 4.730949 AACGAATCTTTCTCCCGTATGA 57.269 40.909 0.00 0.00 32.81 2.15
3117 3199 4.939052 ACGAATCTTTCTCCCGTATGAT 57.061 40.909 0.00 0.00 0.00 2.45
3118 3200 4.872664 ACGAATCTTTCTCCCGTATGATC 58.127 43.478 0.00 0.00 0.00 2.92
3119 3201 4.341235 ACGAATCTTTCTCCCGTATGATCA 59.659 41.667 0.00 0.00 0.00 2.92
3120 3202 5.011125 ACGAATCTTTCTCCCGTATGATCAT 59.989 40.000 13.81 13.81 0.00 2.45
3121 3203 6.208797 ACGAATCTTTCTCCCGTATGATCATA 59.791 38.462 11.49 11.49 0.00 2.15
3122 3204 7.090808 CGAATCTTTCTCCCGTATGATCATAA 58.909 38.462 16.97 0.97 0.00 1.90
3123 3205 7.598869 CGAATCTTTCTCCCGTATGATCATAAA 59.401 37.037 16.97 7.11 0.00 1.40
3124 3206 9.273016 GAATCTTTCTCCCGTATGATCATAAAA 57.727 33.333 16.97 11.35 0.00 1.52
3125 3207 8.608844 ATCTTTCTCCCGTATGATCATAAAAC 57.391 34.615 16.97 6.98 0.00 2.43
3126 3208 7.792032 TCTTTCTCCCGTATGATCATAAAACT 58.208 34.615 16.97 0.00 0.00 2.66
3127 3209 8.920174 TCTTTCTCCCGTATGATCATAAAACTA 58.080 33.333 16.97 2.13 0.00 2.24
3128 3210 8.882415 TTTCTCCCGTATGATCATAAAACTAC 57.118 34.615 16.97 5.54 0.00 2.73
3144 3252 9.238368 CATAAAACTACTCTGTTTTCCCCATAA 57.762 33.333 8.36 0.00 43.95 1.90
3162 3271 7.407918 TCCCCATAAGGATAGGGTTATTAATCC 59.592 40.741 0.00 0.00 41.16 3.01
3235 3349 5.069318 TGATCTTGTAGTCAATTGGTTGCA 58.931 37.500 5.42 1.41 35.26 4.08
3494 3614 0.247185 CATTTTCCGTGCTGGGCATT 59.753 50.000 0.00 0.00 41.91 3.56
3569 3692 1.035139 CTTGTGTCTGGCCTTTGCTT 58.965 50.000 3.32 0.00 37.74 3.91
3655 3780 2.159014 TCGGTTTACTCTGCACTTGTGT 60.159 45.455 2.61 0.00 0.00 3.72
3808 3933 2.750237 GGCACCCCCTTAGTTGCG 60.750 66.667 0.00 0.00 0.00 4.85
3809 3934 3.440415 GCACCCCCTTAGTTGCGC 61.440 66.667 0.00 0.00 0.00 6.09
3810 3935 3.124921 CACCCCCTTAGTTGCGCG 61.125 66.667 0.00 0.00 0.00 6.86
3811 3936 3.633116 ACCCCCTTAGTTGCGCGT 61.633 61.111 8.43 0.00 0.00 6.01
3874 4013 3.382546 AGTGCTTGCAGACTTGTGATTTT 59.617 39.130 0.00 0.00 0.00 1.82
3985 4125 4.114794 CCTCTTGTTTCCTTTTGCAACTG 58.885 43.478 0.00 0.00 0.00 3.16
3986 4126 4.142182 CCTCTTGTTTCCTTTTGCAACTGA 60.142 41.667 0.00 0.00 0.00 3.41
3987 4127 5.398603 TCTTGTTTCCTTTTGCAACTGAA 57.601 34.783 0.00 0.00 0.00 3.02
3988 4128 5.410067 TCTTGTTTCCTTTTGCAACTGAAG 58.590 37.500 0.00 0.00 0.00 3.02
3989 4129 5.184864 TCTTGTTTCCTTTTGCAACTGAAGA 59.815 36.000 10.32 3.81 0.00 2.87
3990 4130 5.596836 TGTTTCCTTTTGCAACTGAAGAT 57.403 34.783 10.32 0.00 0.00 2.40
3991 4131 5.976458 TGTTTCCTTTTGCAACTGAAGATT 58.024 33.333 10.32 0.00 0.00 2.40
3992 4132 6.405538 TGTTTCCTTTTGCAACTGAAGATTT 58.594 32.000 10.32 0.00 0.00 2.17
3993 4133 6.878389 TGTTTCCTTTTGCAACTGAAGATTTT 59.122 30.769 10.32 0.00 0.00 1.82
3994 4134 7.064490 TGTTTCCTTTTGCAACTGAAGATTTTC 59.936 33.333 10.32 0.00 0.00 2.29
3995 4135 6.469782 TCCTTTTGCAACTGAAGATTTTCT 57.530 33.333 10.32 0.00 34.31 2.52
3996 4136 6.877236 TCCTTTTGCAACTGAAGATTTTCTT 58.123 32.000 10.32 0.00 39.87 2.52
3997 4137 6.757947 TCCTTTTGCAACTGAAGATTTTCTTG 59.242 34.615 10.32 0.00 36.73 3.02
3998 4138 6.536224 CCTTTTGCAACTGAAGATTTTCTTGT 59.464 34.615 10.32 0.00 36.73 3.16
3999 4139 7.064966 CCTTTTGCAACTGAAGATTTTCTTGTT 59.935 33.333 10.32 0.86 36.73 2.83
4000 4140 6.890663 TTGCAACTGAAGATTTTCTTGTTG 57.109 33.333 20.27 20.27 43.21 3.33
4001 4141 5.964758 TGCAACTGAAGATTTTCTTGTTGT 58.035 33.333 22.75 5.80 42.82 3.32
4002 4142 6.397272 TGCAACTGAAGATTTTCTTGTTGTT 58.603 32.000 22.75 9.62 42.82 2.83
4003 4143 6.873076 TGCAACTGAAGATTTTCTTGTTGTTT 59.127 30.769 22.75 1.08 42.82 2.83
4004 4144 7.387397 TGCAACTGAAGATTTTCTTGTTGTTTT 59.613 29.630 22.75 0.84 42.82 2.43
4005 4145 8.868916 GCAACTGAAGATTTTCTTGTTGTTTTA 58.131 29.630 22.75 0.00 42.82 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.369182 AGAAAACTATTAGCCGACCATCG 58.631 43.478 0.00 0.00 40.07 3.84
65 66 1.369625 CTGCAACTAAACTAGCCGGG 58.630 55.000 2.18 0.00 0.00 5.73
79 80 1.003118 AGGTGTCTAAATCGGCTGCAA 59.997 47.619 0.50 0.00 0.00 4.08
156 158 7.224753 CGATGGATTGTACTACAAAACTAGCAT 59.775 37.037 5.73 3.70 41.96 3.79
170 172 5.332355 GCGTCAAATACTCGATGGATTGTAC 60.332 44.000 0.00 0.00 0.00 2.90
171 173 4.743151 GCGTCAAATACTCGATGGATTGTA 59.257 41.667 0.00 0.00 0.00 2.41
172 174 3.555956 GCGTCAAATACTCGATGGATTGT 59.444 43.478 0.00 0.00 0.00 2.71
182 187 4.740205 TCATTCTCATCGCGTCAAATACTC 59.260 41.667 5.77 0.00 0.00 2.59
273 312 3.584406 ACTCAGGATCTGAAACACTCG 57.416 47.619 0.00 0.00 40.18 4.18
319 358 3.435105 TGAATTGAACCACAAGTGTGC 57.565 42.857 5.89 0.00 44.34 4.57
321 360 6.959639 ATAGTTGAATTGAACCACAAGTGT 57.040 33.333 4.01 0.00 42.02 3.55
322 361 8.647143 AAAATAGTTGAATTGAACCACAAGTG 57.353 30.769 4.01 0.00 42.02 3.16
325 364 9.255304 GCTAAAAATAGTTGAATTGAACCACAA 57.745 29.630 4.01 0.00 42.95 3.33
327 366 8.915654 CAGCTAAAAATAGTTGAATTGAACCAC 58.084 33.333 4.01 0.00 31.09 4.16
328 367 7.598493 GCAGCTAAAAATAGTTGAATTGAACCA 59.402 33.333 4.01 0.00 31.09 3.67
329 368 7.063426 GGCAGCTAAAAATAGTTGAATTGAACC 59.937 37.037 4.01 0.00 31.09 3.62
330 369 7.598493 TGGCAGCTAAAAATAGTTGAATTGAAC 59.402 33.333 0.00 0.00 31.09 3.18
331 370 7.665690 TGGCAGCTAAAAATAGTTGAATTGAA 58.334 30.769 4.21 0.00 31.09 2.69
333 372 7.384660 TGTTGGCAGCTAAAAATAGTTGAATTG 59.615 33.333 2.28 0.00 31.09 2.32
334 373 7.441017 TGTTGGCAGCTAAAAATAGTTGAATT 58.559 30.769 2.28 0.00 31.09 2.17
335 374 6.991938 TGTTGGCAGCTAAAAATAGTTGAAT 58.008 32.000 2.28 0.00 31.09 2.57
353 392 0.249868 GCCCCAGTTTCTTTGTTGGC 60.250 55.000 0.00 0.00 0.00 4.52
355 394 2.430332 TCAAGCCCCAGTTTCTTTGTTG 59.570 45.455 0.00 0.00 0.00 3.33
356 395 2.430694 GTCAAGCCCCAGTTTCTTTGTT 59.569 45.455 0.00 0.00 0.00 2.83
358 397 2.310538 AGTCAAGCCCCAGTTTCTTTG 58.689 47.619 0.00 0.00 0.00 2.77
367 406 1.422977 TACCAGCAAGTCAAGCCCCA 61.423 55.000 0.00 0.00 0.00 4.96
370 409 2.409948 AGATACCAGCAAGTCAAGCC 57.590 50.000 0.00 0.00 0.00 4.35
371 410 3.118592 ACCTAGATACCAGCAAGTCAAGC 60.119 47.826 0.00 0.00 0.00 4.01
413 452 3.061697 GCACACCGTTCTTATACGAAAGG 59.938 47.826 18.28 18.28 44.69 3.11
414 453 3.676172 TGCACACCGTTCTTATACGAAAG 59.324 43.478 0.00 0.00 43.99 2.62
415 454 3.651206 TGCACACCGTTCTTATACGAAA 58.349 40.909 0.00 0.00 43.99 3.46
416 455 3.300852 TGCACACCGTTCTTATACGAA 57.699 42.857 0.00 0.00 43.99 3.85
417 456 3.183754 CATGCACACCGTTCTTATACGA 58.816 45.455 0.00 0.00 43.99 3.43
418 457 2.927477 ACATGCACACCGTTCTTATACG 59.073 45.455 0.00 0.00 41.06 3.06
419 458 4.939509 AACATGCACACCGTTCTTATAC 57.060 40.909 0.00 0.00 0.00 1.47
420 459 6.092944 CCTTAAACATGCACACCGTTCTTATA 59.907 38.462 0.00 0.00 0.00 0.98
421 460 5.106317 CCTTAAACATGCACACCGTTCTTAT 60.106 40.000 0.00 0.00 0.00 1.73
422 461 4.214545 CCTTAAACATGCACACCGTTCTTA 59.785 41.667 0.00 0.00 0.00 2.10
423 462 3.004315 CCTTAAACATGCACACCGTTCTT 59.996 43.478 0.00 0.00 0.00 2.52
424 463 2.552315 CCTTAAACATGCACACCGTTCT 59.448 45.455 0.00 0.00 0.00 3.01
425 464 2.920647 GCCTTAAACATGCACACCGTTC 60.921 50.000 0.00 0.00 0.00 3.95
426 465 1.000717 GCCTTAAACATGCACACCGTT 60.001 47.619 0.00 0.00 0.00 4.44
427 466 0.596082 GCCTTAAACATGCACACCGT 59.404 50.000 0.00 0.00 0.00 4.83
428 467 0.109319 GGCCTTAAACATGCACACCG 60.109 55.000 0.00 0.00 0.00 4.94
429 468 0.246360 GGGCCTTAAACATGCACACC 59.754 55.000 0.84 0.00 0.00 4.16
430 469 1.067635 CAGGGCCTTAAACATGCACAC 60.068 52.381 1.32 0.00 0.00 3.82
431 470 1.202989 TCAGGGCCTTAAACATGCACA 60.203 47.619 1.32 0.00 0.00 4.57
432 471 1.202348 GTCAGGGCCTTAAACATGCAC 59.798 52.381 1.32 0.00 0.00 4.57
433 472 1.075374 AGTCAGGGCCTTAAACATGCA 59.925 47.619 1.32 0.00 0.00 3.96
434 473 1.839424 AGTCAGGGCCTTAAACATGC 58.161 50.000 1.32 0.00 0.00 4.06
435 474 2.493278 CCAAGTCAGGGCCTTAAACATG 59.507 50.000 1.32 6.02 0.00 3.21
436 475 2.110011 ACCAAGTCAGGGCCTTAAACAT 59.890 45.455 1.32 0.00 0.00 2.71
437 476 1.497286 ACCAAGTCAGGGCCTTAAACA 59.503 47.619 1.32 0.00 0.00 2.83
438 477 2.160205 GACCAAGTCAGGGCCTTAAAC 58.840 52.381 1.32 2.34 32.09 2.01
439 478 2.039879 GAGACCAAGTCAGGGCCTTAAA 59.960 50.000 1.32 0.00 37.41 1.52
440 479 1.628846 GAGACCAAGTCAGGGCCTTAA 59.371 52.381 1.32 0.00 37.41 1.85
441 480 1.276622 GAGACCAAGTCAGGGCCTTA 58.723 55.000 1.32 0.00 37.41 2.69
442 481 1.492993 GGAGACCAAGTCAGGGCCTT 61.493 60.000 1.32 0.00 37.41 4.35
443 482 1.920835 GGAGACCAAGTCAGGGCCT 60.921 63.158 0.00 0.00 37.41 5.19
444 483 1.920835 AGGAGACCAAGTCAGGGCC 60.921 63.158 0.00 0.00 37.41 5.80
445 484 1.298014 CAGGAGACCAAGTCAGGGC 59.702 63.158 0.00 0.00 34.60 5.19
446 485 0.838122 ACCAGGAGACCAAGTCAGGG 60.838 60.000 0.00 0.00 34.60 4.45
447 486 1.059913 AACCAGGAGACCAAGTCAGG 58.940 55.000 0.00 0.00 34.60 3.86
448 487 1.417890 ACAACCAGGAGACCAAGTCAG 59.582 52.381 0.00 0.00 34.60 3.51
449 488 1.140852 CACAACCAGGAGACCAAGTCA 59.859 52.381 0.00 0.00 34.60 3.41
450 489 1.416401 TCACAACCAGGAGACCAAGTC 59.584 52.381 0.00 0.00 0.00 3.01
451 490 1.141053 GTCACAACCAGGAGACCAAGT 59.859 52.381 0.00 0.00 0.00 3.16
452 491 1.884235 GTCACAACCAGGAGACCAAG 58.116 55.000 0.00 0.00 0.00 3.61
466 505 4.447138 AGAATAAACAGTTGGGGTCACA 57.553 40.909 0.00 0.00 0.00 3.58
467 506 4.583073 ACAAGAATAAACAGTTGGGGTCAC 59.417 41.667 0.00 0.00 0.00 3.67
468 507 4.582656 CACAAGAATAAACAGTTGGGGTCA 59.417 41.667 0.00 0.00 0.00 4.02
469 508 4.558697 GCACAAGAATAAACAGTTGGGGTC 60.559 45.833 0.00 0.00 0.00 4.46
470 509 3.320826 GCACAAGAATAAACAGTTGGGGT 59.679 43.478 0.00 0.00 0.00 4.95
471 510 3.573967 AGCACAAGAATAAACAGTTGGGG 59.426 43.478 0.00 0.00 0.00 4.96
472 511 4.853924 AGCACAAGAATAAACAGTTGGG 57.146 40.909 0.00 0.00 0.00 4.12
473 512 5.830912 TCAAGCACAAGAATAAACAGTTGG 58.169 37.500 0.00 0.00 0.00 3.77
480 519 5.531634 CAAGGCTTCAAGCACAAGAATAAA 58.468 37.500 12.53 0.00 44.75 1.40
485 524 0.670162 GCAAGGCTTCAAGCACAAGA 59.330 50.000 12.53 0.00 44.75 3.02
495 534 3.366374 GGTTCAACATAGTGCAAGGCTTC 60.366 47.826 0.00 0.00 0.00 3.86
498 537 1.885887 TGGTTCAACATAGTGCAAGGC 59.114 47.619 0.00 0.00 0.00 4.35
499 538 3.758023 TGATGGTTCAACATAGTGCAAGG 59.242 43.478 0.00 0.00 0.00 3.61
500 539 5.375417 TTGATGGTTCAACATAGTGCAAG 57.625 39.130 0.00 0.00 36.94 4.01
513 552 3.058224 CCCAGTTTCTTCGTTGATGGTTC 60.058 47.826 0.00 0.00 0.00 3.62
517 556 1.200020 GCCCCAGTTTCTTCGTTGATG 59.800 52.381 0.00 0.00 0.00 3.07
518 557 1.073923 AGCCCCAGTTTCTTCGTTGAT 59.926 47.619 0.00 0.00 0.00 2.57
519 558 0.472471 AGCCCCAGTTTCTTCGTTGA 59.528 50.000 0.00 0.00 0.00 3.18
524 563 2.278332 AGTCAAGCCCCAGTTTCTTC 57.722 50.000 0.00 0.00 0.00 2.87
574 624 7.984391 ACATGCACATCGTTCTTATATGAAAA 58.016 30.769 2.82 0.00 0.00 2.29
590 640 3.758554 GTCAGGACCTTAAACATGCACAT 59.241 43.478 0.00 0.00 0.00 3.21
649 699 3.503748 ACATAGTTCAAGGCTTCAAGCAC 59.496 43.478 12.53 0.00 44.75 4.40
650 700 3.754965 ACATAGTTCAAGGCTTCAAGCA 58.245 40.909 12.53 0.00 44.75 3.91
651 701 4.216257 TCAACATAGTTCAAGGCTTCAAGC 59.784 41.667 0.00 0.00 41.46 4.01
656 706 4.469657 TGGTTCAACATAGTTCAAGGCTT 58.530 39.130 0.00 0.00 0.00 4.35
657 707 4.098914 TGGTTCAACATAGTTCAAGGCT 57.901 40.909 0.00 0.00 0.00 4.58
658 708 4.458989 TGATGGTTCAACATAGTTCAAGGC 59.541 41.667 0.00 0.00 0.00 4.35
659 709 6.573664 TTGATGGTTCAACATAGTTCAAGG 57.426 37.500 0.00 0.00 36.94 3.61
725 775 9.927668 CACACAAGGAAACCTTTGATTTATAAT 57.072 29.630 14.50 0.00 41.69 1.28
756 806 8.706322 TCATTATCAGTGCATCCTAGTTAGTA 57.294 34.615 0.00 0.00 0.00 1.82
757 807 7.603180 TCATTATCAGTGCATCCTAGTTAGT 57.397 36.000 0.00 0.00 0.00 2.24
758 808 7.548427 CCATCATTATCAGTGCATCCTAGTTAG 59.452 40.741 0.00 0.00 0.00 2.34
759 809 7.389232 CCATCATTATCAGTGCATCCTAGTTA 58.611 38.462 0.00 0.00 0.00 2.24
760 810 6.236409 CCATCATTATCAGTGCATCCTAGTT 58.764 40.000 0.00 0.00 0.00 2.24
761 811 5.280368 CCCATCATTATCAGTGCATCCTAGT 60.280 44.000 0.00 0.00 0.00 2.57
762 812 5.183969 CCCATCATTATCAGTGCATCCTAG 58.816 45.833 0.00 0.00 0.00 3.02
957 1018 6.872020 GGCTACTTACTCTTGTGATACAAACA 59.128 38.462 0.00 0.00 37.69 2.83
973 1038 3.802685 CCGATGTAAGCTTGGCTACTTAC 59.197 47.826 9.86 14.08 45.47 2.34
1023 1090 1.065854 CCAGGAGGGACAACAGTGATC 60.066 57.143 0.00 0.00 40.01 2.92
1281 1349 2.213499 GTATTGATCTGACCCAAGGCG 58.787 52.381 0.00 0.00 0.00 5.52
1398 1470 0.170339 CAGTACACATGCGACCGAGA 59.830 55.000 0.00 0.00 0.00 4.04
1401 1473 0.713883 GAACAGTACACATGCGACCG 59.286 55.000 0.00 0.00 0.00 4.79
1668 1741 0.988145 AAGGCCGATCAAGGATCCCA 60.988 55.000 8.55 0.00 35.83 4.37
1905 1978 6.324770 TCATCTCCATTACTAGCTTCATGTCA 59.675 38.462 0.00 0.00 0.00 3.58
1917 1990 4.100808 GCCTCTGACTTCATCTCCATTACT 59.899 45.833 0.00 0.00 0.00 2.24
2550 2626 1.203523 CGGCTCTCTGCAGTACTCTTT 59.796 52.381 14.67 0.00 45.15 2.52
2664 2740 3.000080 GCGAAGTCGGTTCACAGCG 62.000 63.158 2.47 0.00 45.61 5.18
3046 3128 3.820557 AGCACAGTTTACACACCTGAAT 58.179 40.909 0.00 0.00 0.00 2.57
3047 3129 3.275617 AGCACAGTTTACACACCTGAA 57.724 42.857 0.00 0.00 0.00 3.02
3098 3180 8.833231 TTTATGATCATACGGGAGAAAGATTC 57.167 34.615 15.10 0.00 0.00 2.52
3105 3187 7.724506 AGAGTAGTTTTATGATCATACGGGAGA 59.275 37.037 15.10 0.00 0.00 3.71
3106 3188 7.810282 CAGAGTAGTTTTATGATCATACGGGAG 59.190 40.741 15.10 0.00 0.00 4.30
3107 3189 7.287005 ACAGAGTAGTTTTATGATCATACGGGA 59.713 37.037 15.10 0.00 0.00 5.14
3108 3190 7.434492 ACAGAGTAGTTTTATGATCATACGGG 58.566 38.462 15.10 3.69 0.00 5.28
3109 3191 8.873215 AACAGAGTAGTTTTATGATCATACGG 57.127 34.615 15.10 4.90 0.00 4.02
3122 3204 6.045106 TCCTTATGGGGAAAACAGAGTAGTTT 59.955 38.462 0.00 0.00 38.27 2.66
3123 3205 5.550403 TCCTTATGGGGAAAACAGAGTAGTT 59.450 40.000 0.00 0.00 35.33 2.24
3124 3206 5.098663 TCCTTATGGGGAAAACAGAGTAGT 58.901 41.667 0.00 0.00 35.33 2.73
3125 3207 5.693769 TCCTTATGGGGAAAACAGAGTAG 57.306 43.478 0.00 0.00 35.33 2.57
3126 3208 6.329197 CCTATCCTTATGGGGAAAACAGAGTA 59.671 42.308 0.00 0.00 39.02 2.59
3127 3209 5.132816 CCTATCCTTATGGGGAAAACAGAGT 59.867 44.000 0.00 0.00 39.02 3.24
3128 3210 5.625150 CCTATCCTTATGGGGAAAACAGAG 58.375 45.833 0.00 0.00 39.02 3.35
3235 3349 2.820787 AGAACTCGCAGCTAACTACACT 59.179 45.455 0.00 0.00 0.00 3.55
3249 3363 6.971184 ACAGTATAATCCGTAAACAGAACTCG 59.029 38.462 0.00 0.00 0.00 4.18
3494 3614 4.704833 GTGCTGAAGCCTCCCGCA 62.705 66.667 0.00 0.00 41.38 5.69
3569 3692 1.603678 GGACCAAGCGTCGTAACAGAA 60.604 52.381 0.00 0.00 42.99 3.02
3655 3780 2.582052 ACAAAATTTGACTCCGCTCCA 58.418 42.857 13.19 0.00 0.00 3.86
3806 3931 2.703409 CCTGACAATGCTACGCGC 59.297 61.111 5.73 0.00 39.77 6.86
3807 3932 2.703409 GCCTGACAATGCTACGCG 59.297 61.111 3.53 3.53 0.00 6.01
3808 3933 2.472909 GGGCCTGACAATGCTACGC 61.473 63.158 0.84 0.00 0.00 4.42
3809 3934 1.819632 GGGGCCTGACAATGCTACG 60.820 63.158 0.84 0.00 0.00 3.51
3810 3935 0.749454 CTGGGGCCTGACAATGCTAC 60.749 60.000 0.84 0.00 0.00 3.58
3811 3936 1.207488 ACTGGGGCCTGACAATGCTA 61.207 55.000 0.84 0.00 0.00 3.49
3863 3999 3.565307 TCTGCCTGGAAAAATCACAAGT 58.435 40.909 0.00 0.00 0.00 3.16
3867 4006 3.127721 GCTACTCTGCCTGGAAAAATCAC 59.872 47.826 0.00 0.00 0.00 3.06
3874 4013 1.352083 AACAGCTACTCTGCCTGGAA 58.648 50.000 0.00 0.00 46.76 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.