Multiple sequence alignment - TraesCS7A01G159200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G159200 chr7A 100.000 3644 0 0 1 3644 115502071 115505714 0.000000e+00 6730.0
1 TraesCS7A01G159200 chr7B 93.932 791 29 6 1884 2669 69355194 69355970 0.000000e+00 1177.0
2 TraesCS7A01G159200 chr7B 90.562 890 46 14 727 1601 69354351 69355217 0.000000e+00 1144.0
3 TraesCS7A01G159200 chr7B 96.346 301 8 2 1589 1886 465961407 465961107 3.270000e-135 492.0
4 TraesCS7A01G159200 chr7B 96.939 294 6 2 1596 1886 399865478 399865185 1.180000e-134 490.0
5 TraesCS7A01G159200 chr7B 96.333 300 7 4 1591 1886 618449459 618449160 1.180000e-134 490.0
6 TraesCS7A01G159200 chr7B 92.398 171 13 0 2973 3143 69357871 69358041 1.010000e-60 244.0
7 TraesCS7A01G159200 chr7B 95.902 122 5 0 2675 2796 69356005 69356126 7.980000e-47 198.0
8 TraesCS7A01G159200 chr7B 95.556 45 2 0 2937 2981 69356184 69356228 5.050000e-09 73.1
9 TraesCS7A01G159200 chr7D 90.562 890 43 12 728 1598 110285284 110286151 0.000000e+00 1140.0
10 TraesCS7A01G159200 chr7D 91.268 710 43 7 861 1569 110220247 110220938 0.000000e+00 950.0
11 TraesCS7A01G159200 chr7D 87.344 719 49 18 2141 2834 110241742 110242443 0.000000e+00 785.0
12 TraesCS7A01G159200 chr7D 93.483 445 28 1 2937 3381 110242517 110242960 0.000000e+00 660.0
13 TraesCS7A01G159200 chr7D 94.470 434 12 7 1901 2334 110286135 110286556 0.000000e+00 658.0
14 TraesCS7A01G159200 chr7D 84.122 592 82 10 3061 3644 110287590 110288177 2.460000e-156 562.0
15 TraesCS7A01G159200 chr7D 89.135 451 30 11 2394 2834 110286562 110287003 8.900000e-151 544.0
16 TraesCS7A01G159200 chr7D 92.086 278 22 0 2937 3214 110287077 110287354 3.410000e-105 392.0
17 TraesCS7A01G159200 chr7D 93.401 197 12 1 1949 2144 110220968 110221164 1.280000e-74 291.0
18 TraesCS7A01G159200 chr7D 84.211 114 17 1 2963 3075 110287354 110287467 3.850000e-20 110.0
19 TraesCS7A01G159200 chr1B 94.650 729 36 2 1 726 231667990 231667262 0.000000e+00 1127.0
20 TraesCS7A01G159200 chr1B 94.247 730 37 4 1 726 67059911 67059183 0.000000e+00 1110.0
21 TraesCS7A01G159200 chr1B 96.678 301 6 3 1589 1886 576050446 576050745 7.030000e-137 497.0
22 TraesCS7A01G159200 chr2A 97.567 411 9 1 1 411 751600766 751600357 0.000000e+00 702.0
23 TraesCS7A01G159200 chr2A 96.939 294 6 2 1596 1886 718829054 718828761 1.180000e-134 490.0
24 TraesCS7A01G159200 chr6B 96.370 303 8 2 1587 1886 470818857 470818555 2.530000e-136 496.0
25 TraesCS7A01G159200 chr6B 96.939 294 6 2 1596 1886 415788835 415788542 1.180000e-134 490.0
26 TraesCS7A01G159200 chr5A 96.949 295 5 2 1596 1886 99205426 99205720 3.270000e-135 492.0
27 TraesCS7A01G159200 chr2B 96.949 295 5 2 1596 1886 137449112 137448818 3.270000e-135 492.0
28 TraesCS7A01G159200 chr2D 77.735 777 109 32 2 726 120982667 120981903 5.630000e-113 418.0
29 TraesCS7A01G159200 chr4D 78.419 658 90 25 110 726 307147033 307147679 7.380000e-102 381.0
30 TraesCS7A01G159200 chr1D 78.745 494 67 18 2 471 360156668 360157147 2.750000e-76 296.0
31 TraesCS7A01G159200 chr3A 80.682 264 51 0 1280 1543 658891637 658891374 4.770000e-49 206.0
32 TraesCS7A01G159200 chr3B 72.973 333 76 10 273 600 338781133 338780810 1.790000e-18 104.0
33 TraesCS7A01G159200 chr3B 85.507 69 7 2 2994 3062 543706039 543706104 6.530000e-08 69.4
34 TraesCS7A01G159200 chr3B 97.222 36 1 0 3022 3057 727262225 727262190 1.090000e-05 62.1
35 TraesCS7A01G159200 chrUn 96.970 33 1 0 3022 3054 47526840 47526872 5.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G159200 chr7A 115502071 115505714 3643 False 6730.000000 6730 100.000000 1 3644 1 chr7A.!!$F1 3643
1 TraesCS7A01G159200 chr7B 69354351 69358041 3690 False 567.220000 1177 93.670000 727 3143 5 chr7B.!!$F1 2416
2 TraesCS7A01G159200 chr7D 110241742 110242960 1218 False 722.500000 785 90.413500 2141 3381 2 chr7D.!!$F2 1240
3 TraesCS7A01G159200 chr7D 110220247 110221164 917 False 620.500000 950 92.334500 861 2144 2 chr7D.!!$F1 1283
4 TraesCS7A01G159200 chr7D 110285284 110288177 2893 False 567.666667 1140 89.097667 728 3644 6 chr7D.!!$F3 2916
5 TraesCS7A01G159200 chr1B 231667262 231667990 728 True 1127.000000 1127 94.650000 1 726 1 chr1B.!!$R2 725
6 TraesCS7A01G159200 chr1B 67059183 67059911 728 True 1110.000000 1110 94.247000 1 726 1 chr1B.!!$R1 725
7 TraesCS7A01G159200 chr2D 120981903 120982667 764 True 418.000000 418 77.735000 2 726 1 chr2D.!!$R1 724
8 TraesCS7A01G159200 chr4D 307147033 307147679 646 False 381.000000 381 78.419000 110 726 1 chr4D.!!$F1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 784 0.387750 GTTACTCCGCGTCCGAAAGT 60.388 55.0 4.92 1.17 36.29 2.66 F
1192 1264 0.320771 CGGGTTCTTCCAGGTCAGTG 60.321 60.0 0.00 0.00 38.11 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1673 0.034863 CCGGGATCCCCTTTTCGAAA 60.035 55.0 25.73 6.47 42.67 3.46 R
3151 4968 0.107643 TCGCCAATCCGCCATGATTA 59.892 50.0 0.00 0.00 33.27 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.059352 GGGATTCATCTTCCCCGTATG 57.941 52.381 0.00 0.00 46.20 2.39
51 52 3.056304 GAGCTCAGAATATGGAAGCGAC 58.944 50.000 9.40 0.00 34.68 5.19
106 116 1.227350 CCATCTTCGCTCATCGCCA 60.227 57.895 0.00 0.00 38.27 5.69
157 167 2.661866 GCCGCTCACACTCGTGTT 60.662 61.111 0.00 0.00 42.83 3.32
167 177 2.872245 CACACTCGTGTTGACCAGAAAT 59.128 45.455 0.00 0.00 42.83 2.17
187 208 3.238497 CACCTCCACCACCGTCCA 61.238 66.667 0.00 0.00 0.00 4.02
201 222 2.920912 TCCACCGGCGAACCTTCT 60.921 61.111 9.30 0.00 0.00 2.85
355 377 1.227674 GGCTGCATAGGGAACTCCG 60.228 63.158 0.50 0.00 43.67 4.63
444 467 3.010420 GTGTTGGGGAAGAATAGTCTGC 58.990 50.000 0.00 0.00 33.05 4.26
531 582 2.119484 AAAACGATCCTGGGCCACGA 62.119 55.000 19.53 14.01 0.00 4.35
610 663 0.889994 TACGTATTCCCGCACAGTGT 59.110 50.000 1.61 0.00 0.00 3.55
638 691 3.537580 ACCAGCACTTCAAAACGAACTA 58.462 40.909 0.00 0.00 0.00 2.24
719 772 1.402613 GAGCTCGAGACCAGTTACTCC 59.597 57.143 18.75 0.00 0.00 3.85
726 779 2.202570 CCAGTTACTCCGCGTCCG 60.203 66.667 4.92 0.00 0.00 4.79
731 784 0.387750 GTTACTCCGCGTCCGAAAGT 60.388 55.000 4.92 1.17 36.29 2.66
738 791 4.248402 CGTCCGAAAGTTACGCCA 57.752 55.556 0.00 0.00 33.05 5.69
772 825 1.460766 GCCGTCGTCTCGTATTGTAC 58.539 55.000 0.00 0.00 0.00 2.90
791 844 1.471684 ACCAATCCGACTCGTACTGTC 59.528 52.381 0.00 5.99 0.00 3.51
792 845 1.202268 CCAATCCGACTCGTACTGTCC 60.202 57.143 9.34 0.00 0.00 4.02
884 955 0.392863 TGGGATGTCCGTGAAGCATG 60.393 55.000 0.00 0.00 38.76 4.06
933 1005 3.007920 AGCTCCTGTGCTCCCCTG 61.008 66.667 0.00 0.00 39.34 4.45
934 1006 4.792804 GCTCCTGTGCTCCCCTGC 62.793 72.222 0.00 0.00 0.00 4.85
935 1007 3.007920 CTCCTGTGCTCCCCTGCT 61.008 66.667 0.00 0.00 0.00 4.24
936 1008 3.005539 TCCTGTGCTCCCCTGCTC 61.006 66.667 0.00 0.00 0.00 4.26
937 1009 3.324930 CCTGTGCTCCCCTGCTCA 61.325 66.667 0.00 0.00 35.55 4.26
938 1010 2.046507 CTGTGCTCCCCTGCTCAC 60.047 66.667 0.00 0.00 33.66 3.51
939 1011 3.618780 CTGTGCTCCCCTGCTCACC 62.619 68.421 0.00 0.00 33.66 4.02
940 1012 4.767255 GTGCTCCCCTGCTCACCG 62.767 72.222 0.00 0.00 0.00 4.94
943 1015 3.775654 CTCCCCTGCTCACCGGAC 61.776 72.222 9.46 0.00 0.00 4.79
967 1039 0.392193 TCACCTACCGGTCTCGTCTC 60.392 60.000 12.40 0.00 43.24 3.36
991 1063 4.267536 CCAAGATTTCCAGATCAAGCAGA 58.732 43.478 0.00 0.00 0.00 4.26
992 1064 4.335874 CCAAGATTTCCAGATCAAGCAGAG 59.664 45.833 0.00 0.00 0.00 3.35
993 1065 3.543665 AGATTTCCAGATCAAGCAGAGC 58.456 45.455 0.00 0.00 0.00 4.09
1022 1094 1.378778 CGAACCTCCTCTCCTCGGT 60.379 63.158 0.00 0.00 0.00 4.69
1187 1259 1.536662 AGCTCGGGTTCTTCCAGGT 60.537 57.895 0.00 0.00 38.11 4.00
1192 1264 0.320771 CGGGTTCTTCCAGGTCAGTG 60.321 60.000 0.00 0.00 38.11 3.66
1194 1266 0.951040 GGTTCTTCCAGGTCAGTGCG 60.951 60.000 0.00 0.00 35.97 5.34
1197 1269 0.756294 TCTTCCAGGTCAGTGCGAAA 59.244 50.000 0.00 0.00 0.00 3.46
1212 1284 1.256812 CGAAATCACAGCCCCCTTTT 58.743 50.000 0.00 0.00 0.00 2.27
1214 1286 2.423538 CGAAATCACAGCCCCCTTTTAG 59.576 50.000 0.00 0.00 0.00 1.85
1243 1315 4.810790 ACTTCATCTCTCGATGTTTCGTT 58.189 39.130 2.64 0.00 45.76 3.85
1255 1327 1.202087 TGTTTCGTTGTCAAAGCACCG 60.202 47.619 0.00 0.00 0.00 4.94
1363 1437 2.291043 GGAGTTCTTCCGGCTCCCA 61.291 63.158 12.70 0.00 42.09 4.37
1444 1518 2.035312 ACCACCTACGAGCTCGGT 59.965 61.111 36.93 23.65 44.95 4.69
1549 1623 3.427503 CGCAAAAGCTCCGGTAAATTCAT 60.428 43.478 0.00 0.00 0.00 2.57
1583 1657 9.152327 ACTCAATCATATCATATGATACCCGAT 57.848 33.333 24.39 21.31 39.57 4.18
1584 1658 9.993454 CTCAATCATATCATATGATACCCGATT 57.007 33.333 24.39 24.51 39.57 3.34
1627 1701 3.564218 GGATCCCGGCCTCTGCAT 61.564 66.667 0.00 0.00 40.13 3.96
1628 1702 2.031768 GATCCCGGCCTCTGCATC 59.968 66.667 0.00 0.00 40.13 3.91
1629 1703 2.769621 ATCCCGGCCTCTGCATCA 60.770 61.111 0.00 0.00 40.13 3.07
1630 1704 2.728443 GATCCCGGCCTCTGCATCAG 62.728 65.000 0.00 0.00 40.13 2.90
1647 1721 3.748623 GCATGATGCATACGGCCA 58.251 55.556 13.36 0.00 44.26 5.36
1648 1722 2.260247 GCATGATGCATACGGCCAT 58.740 52.632 13.36 0.00 44.26 4.40
1649 1723 0.169672 GCATGATGCATACGGCCATC 59.830 55.000 13.36 0.00 44.26 3.51
1650 1724 1.817357 CATGATGCATACGGCCATCT 58.183 50.000 2.24 0.00 43.89 2.90
1651 1725 2.156917 CATGATGCATACGGCCATCTT 58.843 47.619 2.24 0.00 43.89 2.40
1652 1726 3.337358 CATGATGCATACGGCCATCTTA 58.663 45.455 2.24 0.00 43.89 2.10
1653 1727 3.701205 TGATGCATACGGCCATCTTAT 57.299 42.857 2.24 0.00 43.89 1.73
1654 1728 4.019792 TGATGCATACGGCCATCTTATT 57.980 40.909 2.24 0.00 43.89 1.40
1655 1729 5.159273 TGATGCATACGGCCATCTTATTA 57.841 39.130 2.24 0.00 43.89 0.98
1656 1730 5.555966 TGATGCATACGGCCATCTTATTAA 58.444 37.500 2.24 0.00 43.89 1.40
1657 1731 5.411361 TGATGCATACGGCCATCTTATTAAC 59.589 40.000 2.24 0.00 43.89 2.01
1658 1732 4.709250 TGCATACGGCCATCTTATTAACA 58.291 39.130 2.24 0.00 43.89 2.41
1659 1733 5.126779 TGCATACGGCCATCTTATTAACAA 58.873 37.500 2.24 0.00 43.89 2.83
1660 1734 5.767665 TGCATACGGCCATCTTATTAACAAT 59.232 36.000 2.24 0.00 43.89 2.71
1661 1735 6.937465 TGCATACGGCCATCTTATTAACAATA 59.063 34.615 2.24 0.00 43.89 1.90
1662 1736 7.445707 TGCATACGGCCATCTTATTAACAATAA 59.554 33.333 2.24 0.00 43.89 1.40
1663 1737 8.293867 GCATACGGCCATCTTATTAACAATAAA 58.706 33.333 2.24 0.00 32.88 1.40
1666 1740 8.458573 ACGGCCATCTTATTAACAATAAATCA 57.541 30.769 2.24 0.00 33.26 2.57
1667 1741 9.077885 ACGGCCATCTTATTAACAATAAATCAT 57.922 29.630 2.24 0.00 33.26 2.45
1668 1742 9.559958 CGGCCATCTTATTAACAATAAATCATC 57.440 33.333 2.24 0.00 33.26 2.92
1669 1743 9.860898 GGCCATCTTATTAACAATAAATCATCC 57.139 33.333 0.00 0.00 33.26 3.51
1678 1752 8.877864 TTAACAATAAATCATCCACAAGGTCT 57.122 30.769 0.00 0.00 35.89 3.85
1679 1753 7.396540 AACAATAAATCATCCACAAGGTCTC 57.603 36.000 0.00 0.00 35.89 3.36
1680 1754 5.586243 ACAATAAATCATCCACAAGGTCTCG 59.414 40.000 0.00 0.00 35.89 4.04
1681 1755 3.981071 AAATCATCCACAAGGTCTCGA 57.019 42.857 0.00 0.00 35.89 4.04
1682 1756 3.981071 AATCATCCACAAGGTCTCGAA 57.019 42.857 0.00 0.00 35.89 3.71
1683 1757 3.981071 ATCATCCACAAGGTCTCGAAA 57.019 42.857 0.00 0.00 35.89 3.46
1684 1758 3.981071 TCATCCACAAGGTCTCGAAAT 57.019 42.857 0.00 0.00 35.89 2.17
1685 1759 3.861840 TCATCCACAAGGTCTCGAAATC 58.138 45.455 0.00 0.00 35.89 2.17
1686 1760 3.515502 TCATCCACAAGGTCTCGAAATCT 59.484 43.478 0.00 0.00 35.89 2.40
1687 1761 3.594603 TCCACAAGGTCTCGAAATCTC 57.405 47.619 0.00 0.00 35.89 2.75
1688 1762 2.897326 TCCACAAGGTCTCGAAATCTCA 59.103 45.455 0.00 0.00 35.89 3.27
1689 1763 3.323691 TCCACAAGGTCTCGAAATCTCAA 59.676 43.478 0.00 0.00 35.89 3.02
1690 1764 4.065088 CCACAAGGTCTCGAAATCTCAAA 58.935 43.478 0.00 0.00 0.00 2.69
1691 1765 4.515191 CCACAAGGTCTCGAAATCTCAAAA 59.485 41.667 0.00 0.00 0.00 2.44
1692 1766 5.334414 CCACAAGGTCTCGAAATCTCAAAAG 60.334 44.000 0.00 0.00 0.00 2.27
1693 1767 5.237344 CACAAGGTCTCGAAATCTCAAAAGT 59.763 40.000 0.00 0.00 0.00 2.66
1694 1768 6.423905 CACAAGGTCTCGAAATCTCAAAAGTA 59.576 38.462 0.00 0.00 0.00 2.24
1695 1769 6.647067 ACAAGGTCTCGAAATCTCAAAAGTAG 59.353 38.462 0.00 0.00 0.00 2.57
1696 1770 6.347859 AGGTCTCGAAATCTCAAAAGTAGT 57.652 37.500 0.00 0.00 0.00 2.73
1697 1771 7.463961 AGGTCTCGAAATCTCAAAAGTAGTA 57.536 36.000 0.00 0.00 0.00 1.82
1698 1772 7.893658 AGGTCTCGAAATCTCAAAAGTAGTAA 58.106 34.615 0.00 0.00 0.00 2.24
1699 1773 8.365647 AGGTCTCGAAATCTCAAAAGTAGTAAA 58.634 33.333 0.00 0.00 0.00 2.01
1700 1774 8.985805 GGTCTCGAAATCTCAAAAGTAGTAAAA 58.014 33.333 0.00 0.00 0.00 1.52
1723 1797 9.481340 AAAATAAAATGAAGAAGAAAGGCTCAC 57.519 29.630 0.00 0.00 0.00 3.51
1724 1798 7.765695 ATAAAATGAAGAAGAAAGGCTCACA 57.234 32.000 0.00 0.00 0.00 3.58
1725 1799 5.444663 AAATGAAGAAGAAAGGCTCACAC 57.555 39.130 0.00 0.00 0.00 3.82
1726 1800 3.558931 TGAAGAAGAAAGGCTCACACA 57.441 42.857 0.00 0.00 0.00 3.72
1727 1801 3.470709 TGAAGAAGAAAGGCTCACACAG 58.529 45.455 0.00 0.00 0.00 3.66
1728 1802 3.134623 TGAAGAAGAAAGGCTCACACAGA 59.865 43.478 0.00 0.00 0.00 3.41
1737 1811 1.864862 CTCACACAGAGCGCAAAGG 59.135 57.895 11.47 0.00 37.59 3.11
1738 1812 2.180131 CTCACACAGAGCGCAAAGGC 62.180 60.000 11.47 0.00 37.59 4.35
1740 1814 0.950555 CACACAGAGCGCAAAGGCTA 60.951 55.000 11.47 0.00 44.93 3.93
1741 1815 0.671781 ACACAGAGCGCAAAGGCTAG 60.672 55.000 11.47 0.00 44.93 3.42
1742 1816 0.390340 CACAGAGCGCAAAGGCTAGA 60.390 55.000 11.47 0.00 44.93 2.43
1743 1817 0.539051 ACAGAGCGCAAAGGCTAGAT 59.461 50.000 11.47 0.00 44.93 1.98
1744 1818 1.757118 ACAGAGCGCAAAGGCTAGATA 59.243 47.619 11.47 0.00 44.93 1.98
1745 1819 2.131183 CAGAGCGCAAAGGCTAGATAC 58.869 52.381 11.47 0.00 44.93 2.24
1746 1820 1.757118 AGAGCGCAAAGGCTAGATACA 59.243 47.619 11.47 0.00 44.93 2.29
1747 1821 1.861575 GAGCGCAAAGGCTAGATACAC 59.138 52.381 11.47 0.00 44.93 2.90
1748 1822 1.207089 AGCGCAAAGGCTAGATACACA 59.793 47.619 11.47 0.00 42.62 3.72
1749 1823 2.006888 GCGCAAAGGCTAGATACACAA 58.993 47.619 0.30 0.00 38.10 3.33
1750 1824 2.030946 GCGCAAAGGCTAGATACACAAG 59.969 50.000 0.30 0.00 38.10 3.16
1751 1825 2.030946 CGCAAAGGCTAGATACACAAGC 59.969 50.000 0.00 0.00 38.10 4.01
1752 1826 3.274288 GCAAAGGCTAGATACACAAGCT 58.726 45.455 0.00 0.00 36.48 3.74
1753 1827 4.442706 GCAAAGGCTAGATACACAAGCTA 58.557 43.478 0.00 0.00 36.48 3.32
1754 1828 4.509600 GCAAAGGCTAGATACACAAGCTAG 59.490 45.833 0.00 0.00 36.48 3.42
1763 1837 8.662781 CTAGATACACAAGCTAGCCAAATAAA 57.337 34.615 12.13 0.00 0.00 1.40
1764 1838 7.559590 AGATACACAAGCTAGCCAAATAAAG 57.440 36.000 12.13 0.00 0.00 1.85
1765 1839 6.543831 AGATACACAAGCTAGCCAAATAAAGG 59.456 38.462 12.13 0.00 0.00 3.11
1766 1840 4.662278 ACACAAGCTAGCCAAATAAAGGA 58.338 39.130 12.13 0.00 0.00 3.36
1767 1841 5.264395 ACACAAGCTAGCCAAATAAAGGAT 58.736 37.500 12.13 0.00 0.00 3.24
1768 1842 6.423182 ACACAAGCTAGCCAAATAAAGGATA 58.577 36.000 12.13 0.00 0.00 2.59
1769 1843 6.889722 ACACAAGCTAGCCAAATAAAGGATAA 59.110 34.615 12.13 0.00 0.00 1.75
1770 1844 7.396055 ACACAAGCTAGCCAAATAAAGGATAAA 59.604 33.333 12.13 0.00 0.00 1.40
1771 1845 7.702348 CACAAGCTAGCCAAATAAAGGATAAAC 59.298 37.037 12.13 0.00 0.00 2.01
1772 1846 6.961360 AGCTAGCCAAATAAAGGATAAACC 57.039 37.500 12.13 0.00 39.35 3.27
1773 1847 6.431722 AGCTAGCCAAATAAAGGATAAACCA 58.568 36.000 12.13 0.00 42.04 3.67
1774 1848 6.321435 AGCTAGCCAAATAAAGGATAAACCAC 59.679 38.462 12.13 0.00 42.04 4.16
1775 1849 6.096282 GCTAGCCAAATAAAGGATAAACCACA 59.904 38.462 2.29 0.00 42.04 4.17
1776 1850 6.926630 AGCCAAATAAAGGATAAACCACAA 57.073 33.333 0.00 0.00 42.04 3.33
1777 1851 6.697395 AGCCAAATAAAGGATAAACCACAAC 58.303 36.000 0.00 0.00 42.04 3.32
1778 1852 5.872617 GCCAAATAAAGGATAAACCACAACC 59.127 40.000 0.00 0.00 42.04 3.77
1779 1853 6.096695 CCAAATAAAGGATAAACCACAACCG 58.903 40.000 0.00 0.00 42.04 4.44
1780 1854 5.907866 AATAAAGGATAAACCACAACCGG 57.092 39.130 0.00 0.00 42.04 5.28
1781 1855 2.963599 AAGGATAAACCACAACCGGT 57.036 45.000 0.00 0.00 42.71 5.28
1787 1861 2.203294 ACCACAACCGGTTGGCTC 60.203 61.111 41.83 0.00 44.45 4.70
1788 1862 2.203280 CCACAACCGGTTGGCTCA 60.203 61.111 41.83 0.00 44.45 4.26
1789 1863 1.826054 CCACAACCGGTTGGCTCAA 60.826 57.895 41.83 0.00 44.45 3.02
1790 1864 1.388065 CCACAACCGGTTGGCTCAAA 61.388 55.000 41.83 0.00 44.45 2.69
1791 1865 0.457851 CACAACCGGTTGGCTCAAAA 59.542 50.000 41.83 0.00 44.45 2.44
1792 1866 1.134965 CACAACCGGTTGGCTCAAAAA 60.135 47.619 41.83 0.00 44.45 1.94
1793 1867 1.760029 ACAACCGGTTGGCTCAAAAAT 59.240 42.857 41.83 21.28 44.45 1.82
1794 1868 2.959707 ACAACCGGTTGGCTCAAAAATA 59.040 40.909 41.83 0.00 44.45 1.40
1795 1869 3.005367 ACAACCGGTTGGCTCAAAAATAG 59.995 43.478 41.83 19.25 44.45 1.73
1796 1870 3.149005 ACCGGTTGGCTCAAAAATAGA 57.851 42.857 0.00 0.00 39.70 1.98
1797 1871 2.817844 ACCGGTTGGCTCAAAAATAGAC 59.182 45.455 0.00 0.00 39.70 2.59
1798 1872 2.817258 CCGGTTGGCTCAAAAATAGACA 59.183 45.455 0.00 0.00 0.00 3.41
1799 1873 3.119849 CCGGTTGGCTCAAAAATAGACAG 60.120 47.826 0.00 0.00 32.36 3.51
1800 1874 3.119849 CGGTTGGCTCAAAAATAGACAGG 60.120 47.826 0.00 0.00 32.36 4.00
1801 1875 3.826729 GGTTGGCTCAAAAATAGACAGGT 59.173 43.478 0.00 0.00 32.36 4.00
1802 1876 5.007682 GGTTGGCTCAAAAATAGACAGGTA 58.992 41.667 0.00 0.00 32.36 3.08
1803 1877 5.475564 GGTTGGCTCAAAAATAGACAGGTAA 59.524 40.000 0.00 0.00 32.36 2.85
1804 1878 6.015772 GGTTGGCTCAAAAATAGACAGGTAAA 60.016 38.462 0.00 0.00 32.36 2.01
1805 1879 6.569179 TGGCTCAAAAATAGACAGGTAAAC 57.431 37.500 0.00 0.00 0.00 2.01
1806 1880 6.303839 TGGCTCAAAAATAGACAGGTAAACT 58.696 36.000 0.00 0.00 0.00 2.66
1807 1881 7.455058 TGGCTCAAAAATAGACAGGTAAACTA 58.545 34.615 0.00 0.00 0.00 2.24
1808 1882 7.940137 TGGCTCAAAAATAGACAGGTAAACTAA 59.060 33.333 0.00 0.00 0.00 2.24
1809 1883 8.957466 GGCTCAAAAATAGACAGGTAAACTAAT 58.043 33.333 0.00 0.00 0.00 1.73
1818 1892 9.780186 ATAGACAGGTAAACTAATTGCTTATCC 57.220 33.333 0.00 0.00 0.00 2.59
1819 1893 7.862675 AGACAGGTAAACTAATTGCTTATCCT 58.137 34.615 0.00 0.00 0.00 3.24
1820 1894 8.989131 AGACAGGTAAACTAATTGCTTATCCTA 58.011 33.333 0.00 0.00 0.00 2.94
1821 1895 9.780186 GACAGGTAAACTAATTGCTTATCCTAT 57.220 33.333 0.00 0.00 0.00 2.57
1830 1904 9.726438 ACTAATTGCTTATCCTATTACATGACC 57.274 33.333 0.00 0.00 0.00 4.02
1831 1905 7.672983 AATTGCTTATCCTATTACATGACCG 57.327 36.000 0.00 0.00 0.00 4.79
1832 1906 5.801531 TGCTTATCCTATTACATGACCGT 57.198 39.130 0.00 0.00 0.00 4.83
1833 1907 5.779922 TGCTTATCCTATTACATGACCGTC 58.220 41.667 0.00 0.00 0.00 4.79
1834 1908 5.303333 TGCTTATCCTATTACATGACCGTCA 59.697 40.000 3.10 3.10 0.00 4.35
1835 1909 6.014584 TGCTTATCCTATTACATGACCGTCAT 60.015 38.462 8.28 8.28 37.65 3.06
1836 1910 6.531948 GCTTATCCTATTACATGACCGTCATC 59.468 42.308 11.24 0.00 34.28 2.92
1837 1911 4.866508 TCCTATTACATGACCGTCATCC 57.133 45.455 11.24 0.00 34.28 3.51
1838 1912 4.219919 TCCTATTACATGACCGTCATCCA 58.780 43.478 11.24 0.00 34.28 3.41
1839 1913 4.651962 TCCTATTACATGACCGTCATCCAA 59.348 41.667 11.24 8.58 34.28 3.53
1840 1914 5.129650 TCCTATTACATGACCGTCATCCAAA 59.870 40.000 11.24 6.61 34.28 3.28
1841 1915 5.236478 CCTATTACATGACCGTCATCCAAAC 59.764 44.000 11.24 0.00 34.28 2.93
1842 1916 1.821216 ACATGACCGTCATCCAAACC 58.179 50.000 11.24 0.00 34.28 3.27
1843 1917 0.726827 CATGACCGTCATCCAAACCG 59.273 55.000 11.24 0.00 34.28 4.44
1844 1918 0.392461 ATGACCGTCATCCAAACCGG 60.392 55.000 8.28 0.00 45.72 5.28
1845 1919 2.359478 ACCGTCATCCAAACCGGC 60.359 61.111 0.00 0.00 44.14 6.13
1846 1920 2.046314 CCGTCATCCAAACCGGCT 60.046 61.111 0.00 0.00 33.20 5.52
1847 1921 2.398554 CCGTCATCCAAACCGGCTG 61.399 63.158 0.00 0.00 33.20 4.85
1848 1922 1.375396 CGTCATCCAAACCGGCTGA 60.375 57.895 0.00 0.00 37.58 4.26
1849 1923 0.953471 CGTCATCCAAACCGGCTGAA 60.953 55.000 0.00 0.00 41.54 3.02
1850 1924 0.804989 GTCATCCAAACCGGCTGAAG 59.195 55.000 0.00 0.00 41.54 3.02
1851 1925 0.690192 TCATCCAAACCGGCTGAAGA 59.310 50.000 0.00 0.00 36.97 2.87
1852 1926 1.281867 TCATCCAAACCGGCTGAAGAT 59.718 47.619 0.00 0.00 36.97 2.40
1853 1927 2.503765 TCATCCAAACCGGCTGAAGATA 59.496 45.455 0.00 0.00 36.97 1.98
1854 1928 3.136443 TCATCCAAACCGGCTGAAGATAT 59.864 43.478 0.00 0.00 36.97 1.63
1855 1929 3.194005 TCCAAACCGGCTGAAGATATC 57.806 47.619 0.00 0.00 33.14 1.63
1856 1930 2.158813 TCCAAACCGGCTGAAGATATCC 60.159 50.000 0.00 0.00 33.14 2.59
1857 1931 2.222027 CAAACCGGCTGAAGATATCCC 58.778 52.381 0.00 0.00 0.00 3.85
1858 1932 0.393077 AACCGGCTGAAGATATCCCG 59.607 55.000 0.00 9.61 38.71 5.14
1859 1933 0.469331 ACCGGCTGAAGATATCCCGA 60.469 55.000 16.17 0.00 41.34 5.14
1860 1934 0.244994 CCGGCTGAAGATATCCCGAG 59.755 60.000 16.17 4.07 41.34 4.63
1861 1935 0.389166 CGGCTGAAGATATCCCGAGC 60.389 60.000 10.76 9.48 41.34 5.03
1862 1936 0.972883 GGCTGAAGATATCCCGAGCT 59.027 55.000 14.02 0.00 0.00 4.09
1863 1937 2.171840 GGCTGAAGATATCCCGAGCTA 58.828 52.381 14.02 0.00 0.00 3.32
1864 1938 2.094442 GGCTGAAGATATCCCGAGCTAC 60.094 54.545 14.02 0.19 0.00 3.58
1865 1939 2.094442 GCTGAAGATATCCCGAGCTACC 60.094 54.545 0.00 0.00 0.00 3.18
1866 1940 2.160205 TGAAGATATCCCGAGCTACCG 58.840 52.381 0.00 0.00 0.00 4.02
1867 1941 2.161030 GAAGATATCCCGAGCTACCGT 58.839 52.381 0.00 0.00 0.00 4.83
1868 1942 2.289592 AGATATCCCGAGCTACCGTT 57.710 50.000 0.00 0.00 0.00 4.44
1869 1943 2.595238 AGATATCCCGAGCTACCGTTT 58.405 47.619 0.00 0.00 0.00 3.60
1870 1944 2.557490 AGATATCCCGAGCTACCGTTTC 59.443 50.000 0.00 0.00 0.00 2.78
1871 1945 1.035139 TATCCCGAGCTACCGTTTCC 58.965 55.000 0.00 0.00 0.00 3.13
1872 1946 1.683418 ATCCCGAGCTACCGTTTCCC 61.683 60.000 0.00 0.00 0.00 3.97
1873 1947 2.652095 CCCGAGCTACCGTTTCCCA 61.652 63.158 0.00 0.00 0.00 4.37
1874 1948 1.520666 CCGAGCTACCGTTTCCCAT 59.479 57.895 0.00 0.00 0.00 4.00
1875 1949 0.529992 CCGAGCTACCGTTTCCCATC 60.530 60.000 0.00 0.00 0.00 3.51
1876 1950 0.870307 CGAGCTACCGTTTCCCATCG 60.870 60.000 0.00 0.00 0.00 3.84
1883 1957 3.678921 CGTTTCCCATCGGATAGCA 57.321 52.632 0.00 0.00 38.24 3.49
1884 1958 1.217882 CGTTTCCCATCGGATAGCAC 58.782 55.000 0.00 0.00 38.24 4.40
1885 1959 1.594331 GTTTCCCATCGGATAGCACC 58.406 55.000 0.00 0.00 38.24 5.01
1886 1960 0.472471 TTTCCCATCGGATAGCACCC 59.528 55.000 0.00 0.00 38.24 4.61
1936 2025 9.658799 TTTGATTTGACTAATTTTGGTGTTGAA 57.341 25.926 0.00 0.00 0.00 2.69
1937 2026 9.829507 TTGATTTGACTAATTTTGGTGTTGAAT 57.170 25.926 0.00 0.00 0.00 2.57
1938 2027 9.474920 TGATTTGACTAATTTTGGTGTTGAATC 57.525 29.630 0.00 0.00 0.00 2.52
1939 2028 9.696917 GATTTGACTAATTTTGGTGTTGAATCT 57.303 29.630 0.00 0.00 0.00 2.40
1940 2029 9.696917 ATTTGACTAATTTTGGTGTTGAATCTC 57.303 29.630 0.00 0.00 0.00 2.75
1941 2030 6.898041 TGACTAATTTTGGTGTTGAATCTCG 58.102 36.000 0.00 0.00 0.00 4.04
1942 2031 6.708502 TGACTAATTTTGGTGTTGAATCTCGA 59.291 34.615 0.00 0.00 0.00 4.04
1943 2032 7.095229 TGACTAATTTTGGTGTTGAATCTCGAG 60.095 37.037 5.93 5.93 0.00 4.04
1944 2033 6.710744 ACTAATTTTGGTGTTGAATCTCGAGT 59.289 34.615 13.13 0.00 0.00 4.18
1945 2034 4.811555 TTTTGGTGTTGAATCTCGAGTG 57.188 40.909 13.13 0.00 0.00 3.51
1946 2035 1.795768 TGGTGTTGAATCTCGAGTGC 58.204 50.000 13.13 3.75 0.00 4.40
1947 2036 0.716108 GGTGTTGAATCTCGAGTGCG 59.284 55.000 13.13 0.00 39.35 5.34
1987 2076 3.744719 TTCGTGGAGCCGACGAGG 61.745 66.667 10.99 0.00 45.89 4.63
2089 2179 0.294887 GCGACGTGATCATCAACGTC 59.705 55.000 22.50 22.50 42.12 4.34
2188 2278 4.135153 CTCCAGAGCACCGTCCCG 62.135 72.222 0.00 0.00 0.00 5.14
2305 2405 2.762327 CCATTGATCACTTCCCCCTTTG 59.238 50.000 0.00 0.00 0.00 2.77
2357 2458 3.924073 TCGTCGATCGATCAACACAAATT 59.076 39.130 22.50 0.00 44.01 1.82
2367 2468 4.782019 TCAACACAAATTATCACCAGGC 57.218 40.909 0.00 0.00 0.00 4.85
2650 2758 3.412386 GCCTTCAAGCTTTAGACCTCAA 58.588 45.455 0.00 0.00 0.00 3.02
2669 2777 5.814705 CCTCAAGTTCACCTGTATCTGATTC 59.185 44.000 0.00 0.00 0.00 2.52
2670 2778 6.351711 CCTCAAGTTCACCTGTATCTGATTCT 60.352 42.308 0.00 0.00 0.00 2.40
2673 2781 6.805016 AGTTCACCTGTATCTGATTCTGAT 57.195 37.500 10.43 10.43 0.00 2.90
2678 2815 6.156775 TCACCTGTATCTGATTCTGATTTGGA 59.843 38.462 10.80 0.71 0.00 3.53
2724 2861 1.744798 GCCTGTACTGCTGATGATGCA 60.745 52.381 0.00 0.00 38.81 3.96
2729 2866 1.893544 ACTGCTGATGATGCATAGGC 58.106 50.000 0.00 0.00 39.86 3.93
2741 2886 2.639065 TGCATAGGCCGGAGTAAAAAG 58.361 47.619 5.05 0.00 40.13 2.27
2799 2944 2.812011 TCTGCTATATCGACGCTGCTTA 59.188 45.455 0.00 0.00 0.00 3.09
2804 2949 4.031878 GCTATATCGACGCTGCTTAATTCC 59.968 45.833 0.00 0.00 0.00 3.01
2835 3001 2.465860 TCAATGTGTGTCCGGGTAAG 57.534 50.000 0.00 0.00 0.00 2.34
2854 3020 4.847365 AAGATCATCGAAACATGACACG 57.153 40.909 0.00 1.63 35.57 4.49
2870 3036 6.039829 ACATGACACGCAGATCTTAGATTCTA 59.960 38.462 0.00 0.00 0.00 2.10
2876 3042 8.851145 ACACGCAGATCTTAGATTCTAAAGATA 58.149 33.333 7.51 0.00 41.40 1.98
2877 3043 9.340695 CACGCAGATCTTAGATTCTAAAGATAG 57.659 37.037 7.51 9.10 41.40 2.08
2879 3045 7.487829 CGCAGATCTTAGATTCTAAAGATAGGC 59.512 40.741 7.51 14.30 41.40 3.93
2880 3046 8.310382 GCAGATCTTAGATTCTAAAGATAGGCA 58.690 37.037 19.71 0.00 41.40 4.75
2893 3059 9.494271 TCTAAAGATAGGCATTATGATGTTCAC 57.506 33.333 0.00 0.00 35.63 3.18
2894 3060 6.791887 AAGATAGGCATTATGATGTTCACG 57.208 37.500 0.00 0.00 35.63 4.35
2895 3061 5.240891 AGATAGGCATTATGATGTTCACGG 58.759 41.667 0.00 0.00 35.63 4.94
2896 3062 1.949525 AGGCATTATGATGTTCACGGC 59.050 47.619 0.00 0.00 35.63 5.68
2897 3063 1.334059 GGCATTATGATGTTCACGGCG 60.334 52.381 4.80 4.80 35.63 6.46
2898 3064 1.334059 GCATTATGATGTTCACGGCGG 60.334 52.381 13.24 0.00 35.63 6.13
2899 3065 0.944386 ATTATGATGTTCACGGCGGC 59.056 50.000 13.24 0.00 0.00 6.53
2900 3066 0.391793 TTATGATGTTCACGGCGGCA 60.392 50.000 13.24 4.94 0.00 5.69
2901 3067 0.391793 TATGATGTTCACGGCGGCAA 60.392 50.000 13.24 0.00 0.00 4.52
2902 3068 1.031571 ATGATGTTCACGGCGGCAAT 61.032 50.000 13.24 0.00 0.00 3.56
2903 3069 1.226379 GATGTTCACGGCGGCAATG 60.226 57.895 13.24 6.85 0.00 2.82
2904 3070 1.922135 GATGTTCACGGCGGCAATGT 61.922 55.000 13.24 0.00 0.00 2.71
2905 3071 2.126888 GTTCACGGCGGCAATGTG 60.127 61.111 13.24 9.53 34.96 3.21
2906 3072 2.281139 TTCACGGCGGCAATGTGA 60.281 55.556 13.24 11.94 40.62 3.58
2907 3073 1.673993 TTCACGGCGGCAATGTGAT 60.674 52.632 16.59 0.00 41.80 3.06
2908 3074 1.643868 TTCACGGCGGCAATGTGATC 61.644 55.000 16.59 0.00 41.80 2.92
2909 3075 2.046411 ACGGCGGCAATGTGATCA 60.046 55.556 13.24 0.00 0.00 2.92
2910 3076 1.451927 ACGGCGGCAATGTGATCAT 60.452 52.632 13.24 0.00 35.59 2.45
2911 3077 1.280746 CGGCGGCAATGTGATCATC 59.719 57.895 10.53 0.00 32.56 2.92
2912 3078 1.438562 CGGCGGCAATGTGATCATCA 61.439 55.000 10.53 0.00 32.56 3.07
2913 3079 0.740149 GGCGGCAATGTGATCATCAA 59.260 50.000 3.07 0.00 32.56 2.57
2914 3080 1.534595 GGCGGCAATGTGATCATCAAC 60.535 52.381 3.07 0.00 32.56 3.18
2915 3081 1.857204 GCGGCAATGTGATCATCAACG 60.857 52.381 0.00 0.97 32.56 4.10
2916 3082 1.398041 CGGCAATGTGATCATCAACGT 59.602 47.619 0.00 0.00 32.56 3.99
2917 3083 2.159531 CGGCAATGTGATCATCAACGTT 60.160 45.455 0.00 0.00 32.56 3.99
2918 3084 3.063316 CGGCAATGTGATCATCAACGTTA 59.937 43.478 0.00 0.00 32.56 3.18
2919 3085 4.436718 CGGCAATGTGATCATCAACGTTAA 60.437 41.667 0.00 0.00 32.56 2.01
2920 3086 4.793216 GGCAATGTGATCATCAACGTTAAC 59.207 41.667 0.00 0.00 32.56 2.01
2921 3087 4.793216 GCAATGTGATCATCAACGTTAACC 59.207 41.667 0.00 0.00 32.56 2.85
2922 3088 5.618863 GCAATGTGATCATCAACGTTAACCA 60.619 40.000 0.00 0.00 32.56 3.67
2923 3089 5.545658 ATGTGATCATCAACGTTAACCAC 57.454 39.130 0.00 4.67 0.00 4.16
2924 3090 4.637276 TGTGATCATCAACGTTAACCACT 58.363 39.130 0.00 0.00 0.00 4.00
2925 3091 5.785243 TGTGATCATCAACGTTAACCACTA 58.215 37.500 0.00 0.00 0.00 2.74
2926 3092 5.636121 TGTGATCATCAACGTTAACCACTAC 59.364 40.000 0.00 0.00 0.00 2.73
2927 3093 5.636121 GTGATCATCAACGTTAACCACTACA 59.364 40.000 0.00 0.00 0.00 2.74
2928 3094 5.636121 TGATCATCAACGTTAACCACTACAC 59.364 40.000 0.00 0.00 0.00 2.90
2929 3095 3.982701 TCATCAACGTTAACCACTACACG 59.017 43.478 0.00 0.00 38.62 4.49
2930 3096 2.126467 TCAACGTTAACCACTACACGC 58.874 47.619 0.00 0.00 36.05 5.34
2931 3097 1.192980 CAACGTTAACCACTACACGCC 59.807 52.381 0.00 0.00 36.05 5.68
2932 3098 0.388659 ACGTTAACCACTACACGCCA 59.611 50.000 0.00 0.00 36.05 5.69
2933 3099 1.001181 ACGTTAACCACTACACGCCAT 59.999 47.619 0.00 0.00 36.05 4.40
2934 3100 1.392168 CGTTAACCACTACACGCCATG 59.608 52.381 0.00 0.00 0.00 3.66
2935 3101 2.690786 GTTAACCACTACACGCCATGA 58.309 47.619 0.00 0.00 0.00 3.07
2985 4802 0.874607 GAACGCAGTCGACACCACTT 60.875 55.000 19.50 1.74 45.00 3.16
2986 4803 0.461339 AACGCAGTCGACACCACTTT 60.461 50.000 19.50 0.91 45.00 2.66
2995 4812 4.989168 AGTCGACACCACTTTAACATTCTC 59.011 41.667 19.50 0.00 0.00 2.87
3114 4931 3.644738 ACCACGAAAGGAAGAGTAGGAAA 59.355 43.478 0.00 0.00 0.00 3.13
3131 4948 0.108585 AAAGCGCCTCTTTCTGGTCA 59.891 50.000 2.29 0.00 40.89 4.02
3151 4968 1.557099 TTACTCGACATCAGCCACCT 58.443 50.000 0.00 0.00 0.00 4.00
3177 4994 2.125673 CGGATTGGCGACGAAGGT 60.126 61.111 0.00 0.00 0.00 3.50
3207 5024 3.897122 TCCCCAACCAGCACCACC 61.897 66.667 0.00 0.00 0.00 4.61
3227 5434 1.153429 GAATCGGGAGGGAACACGG 60.153 63.158 0.00 0.00 0.00 4.94
3302 5509 3.172106 TTGGCCCAGACGAACCCA 61.172 61.111 0.00 0.00 0.00 4.51
3360 5567 2.525592 CAAGGCAACCCCTCCCAA 59.474 61.111 0.00 0.00 45.62 4.12
3381 5588 1.202830 AGTCGCATAAACCACCACCAA 60.203 47.619 0.00 0.00 0.00 3.67
3384 5591 1.335506 CGCATAAACCACCACCAACAC 60.336 52.381 0.00 0.00 0.00 3.32
3385 5592 1.683917 GCATAAACCACCACCAACACA 59.316 47.619 0.00 0.00 0.00 3.72
3386 5593 2.544903 GCATAAACCACCACCAACACAC 60.545 50.000 0.00 0.00 0.00 3.82
3387 5594 2.509166 TAAACCACCACCAACACACA 57.491 45.000 0.00 0.00 0.00 3.72
3388 5595 0.892063 AAACCACCACCAACACACAC 59.108 50.000 0.00 0.00 0.00 3.82
3389 5596 0.968393 AACCACCACCAACACACACC 60.968 55.000 0.00 0.00 0.00 4.16
3392 5599 0.679640 CACCACCAACACACACCACT 60.680 55.000 0.00 0.00 0.00 4.00
3393 5600 0.393808 ACCACCAACACACACCACTC 60.394 55.000 0.00 0.00 0.00 3.51
3394 5601 0.393673 CCACCAACACACACCACTCA 60.394 55.000 0.00 0.00 0.00 3.41
3396 5603 0.393808 ACCAACACACACCACTCACC 60.394 55.000 0.00 0.00 0.00 4.02
3397 5604 0.393673 CCAACACACACCACTCACCA 60.394 55.000 0.00 0.00 0.00 4.17
3398 5605 0.732571 CAACACACACCACTCACCAC 59.267 55.000 0.00 0.00 0.00 4.16
3399 5606 0.326595 AACACACACCACTCACCACA 59.673 50.000 0.00 0.00 0.00 4.17
3401 5608 1.153449 ACACACCACTCACCACACG 60.153 57.895 0.00 0.00 0.00 4.49
3404 5611 1.597854 CACCACTCACCACACGCAT 60.598 57.895 0.00 0.00 0.00 4.73
3407 5614 1.568612 CCACTCACCACACGCATGTC 61.569 60.000 0.00 0.00 36.72 3.06
3428 5635 1.077501 CCGCATTCCACCACATCCT 60.078 57.895 0.00 0.00 0.00 3.24
3429 5636 0.680921 CCGCATTCCACCACATCCTT 60.681 55.000 0.00 0.00 0.00 3.36
3439 5646 1.299648 CACATCCTTCTCGGGGCAA 59.700 57.895 0.00 0.00 0.00 4.52
3457 5664 1.789576 AACACCCACCACCTCCATCC 61.790 60.000 0.00 0.00 0.00 3.51
3458 5665 3.009115 ACCCACCACCTCCATCCG 61.009 66.667 0.00 0.00 0.00 4.18
3464 5671 1.762460 CCACCTCCATCCGGTAGCT 60.762 63.158 0.00 0.00 32.37 3.32
3466 5673 0.962489 CACCTCCATCCGGTAGCTAG 59.038 60.000 0.00 0.00 32.37 3.42
3469 5676 0.875728 CTCCATCCGGTAGCTAGTCG 59.124 60.000 0.00 1.19 0.00 4.18
3470 5677 0.536687 TCCATCCGGTAGCTAGTCGG 60.537 60.000 22.58 22.58 44.59 4.79
3504 5713 2.153547 AAATTTGGCCAACCCGAGCG 62.154 55.000 20.35 0.00 35.87 5.03
3535 5744 1.298859 CCAGAGCCGTTAAGCACCAC 61.299 60.000 0.00 0.00 34.23 4.16
3536 5745 0.320771 CAGAGCCGTTAAGCACCACT 60.321 55.000 0.00 0.00 34.23 4.00
3576 5786 1.276138 CACACCACATCTGTGCCTAGA 59.724 52.381 4.77 0.00 44.34 2.43
3587 5797 3.556817 TGCCTAGAAGCACCACATG 57.443 52.632 0.00 0.00 38.00 3.21
3598 5808 3.434319 CCACATGCGGCACACTCC 61.434 66.667 4.03 0.00 0.00 3.85
3606 5816 4.269523 GGCACACTCCAGGCCACA 62.270 66.667 5.01 0.00 46.92 4.17
3607 5817 2.980233 GCACACTCCAGGCCACAC 60.980 66.667 5.01 0.00 0.00 3.82
3608 5818 2.510411 CACACTCCAGGCCACACA 59.490 61.111 5.01 0.00 0.00 3.72
3613 5823 1.379916 CTCCAGGCCACACATTCCA 59.620 57.895 5.01 0.00 0.00 3.53
3615 5825 1.075482 CCAGGCCACACATTCCACT 59.925 57.895 5.01 0.00 0.00 4.00
3623 5833 1.069703 CACACATTCCACTTGCGACTG 60.070 52.381 0.00 0.00 0.00 3.51
3628 5838 2.731691 TTCCACTTGCGACTGGAGCC 62.732 60.000 2.93 0.00 37.85 4.70
3630 5840 4.021925 ACTTGCGACTGGAGCCCC 62.022 66.667 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.224137 CGCTTCCATATTCTGAGCTCCA 60.224 50.000 12.15 0.00 0.00 3.86
29 30 2.036475 TCGCTTCCATATTCTGAGCTCC 59.964 50.000 12.15 0.00 0.00 4.70
51 52 1.233019 CAGCAGTGTGAAGGGACAAG 58.767 55.000 0.00 0.00 0.00 3.16
157 167 2.027192 GTGGAGGTGCTATTTCTGGTCA 60.027 50.000 0.00 0.00 0.00 4.02
167 177 2.203728 ACGGTGGTGGAGGTGCTA 60.204 61.111 0.00 0.00 0.00 3.49
187 208 4.699522 GCCAGAAGGTTCGCCGGT 62.700 66.667 1.90 0.00 43.66 5.28
201 222 0.332972 TAGGAGAGAGTCTGCTGCCA 59.667 55.000 8.11 0.00 45.08 4.92
321 343 3.117776 TGCAGCCAATCAGAAGGTATGAT 60.118 43.478 0.00 0.00 39.06 2.45
422 445 3.559171 GCAGACTATTCTTCCCCAACACA 60.559 47.826 0.00 0.00 0.00 3.72
424 447 2.354704 CGCAGACTATTCTTCCCCAACA 60.355 50.000 0.00 0.00 0.00 3.33
444 467 0.366871 CCTCGAAACGAATGCAGACG 59.633 55.000 12.54 12.54 34.74 4.18
610 663 4.367450 GTTTTGAAGTGCTGGTAATTGCA 58.633 39.130 0.00 0.00 36.79 4.08
638 691 7.302708 AGGGATATGGGCCAATTCTTTATAT 57.697 36.000 11.89 0.04 0.00 0.86
726 779 3.861834 CGCTGATTATGGCGTAACTTTC 58.138 45.455 0.32 0.00 45.34 2.62
772 825 1.202268 GGACAGTACGAGTCGGATTGG 60.202 57.143 22.52 8.25 31.64 3.16
884 955 5.062308 GGAGACAAATGCGAATATATCCGAC 59.938 44.000 0.00 0.00 0.00 4.79
933 1005 3.695606 TGAGCAGGTCCGGTGAGC 61.696 66.667 0.00 1.72 39.33 4.26
934 1006 2.262915 GTGAGCAGGTCCGGTGAG 59.737 66.667 0.00 0.00 0.00 3.51
935 1007 2.435120 TAGGTGAGCAGGTCCGGTGA 62.435 60.000 0.00 0.00 0.00 4.02
936 1008 1.982395 TAGGTGAGCAGGTCCGGTG 60.982 63.158 0.00 0.00 0.00 4.94
937 1009 1.982938 GTAGGTGAGCAGGTCCGGT 60.983 63.158 0.00 0.00 0.00 5.28
938 1010 2.722201 GGTAGGTGAGCAGGTCCGG 61.722 68.421 0.00 0.00 0.00 5.14
939 1011 2.893398 GGTAGGTGAGCAGGTCCG 59.107 66.667 0.00 0.00 0.00 4.79
940 1012 2.722201 CCGGTAGGTGAGCAGGTCC 61.722 68.421 0.00 0.00 0.00 4.46
941 1013 2.893398 CCGGTAGGTGAGCAGGTC 59.107 66.667 0.00 0.00 0.00 3.85
967 1039 2.692041 GCTTGATCTGGAAATCTTGGGG 59.308 50.000 0.00 0.00 0.00 4.96
991 1063 2.437359 GTTCGCCATGGCTCTGCT 60.437 61.111 33.07 0.00 39.32 4.24
992 1064 3.512516 GGTTCGCCATGGCTCTGC 61.513 66.667 33.07 19.52 39.32 4.26
993 1065 1.817099 GAGGTTCGCCATGGCTCTG 60.817 63.158 33.07 18.78 40.60 3.35
1087 1159 2.363147 GAGGGAGACGGCCTGAGT 60.363 66.667 0.00 0.00 0.00 3.41
1187 1259 0.955428 GGGCTGTGATTTCGCACTGA 60.955 55.000 0.00 0.00 39.27 3.41
1192 1264 1.250840 AAAGGGGGCTGTGATTTCGC 61.251 55.000 0.00 0.00 0.00 4.70
1194 1266 3.431415 ACTAAAAGGGGGCTGTGATTTC 58.569 45.455 0.00 0.00 0.00 2.17
1197 1269 3.850173 TCTAACTAAAAGGGGGCTGTGAT 59.150 43.478 0.00 0.00 0.00 3.06
1243 1315 2.280524 CGGTCCGGTGCTTTGACA 60.281 61.111 2.34 0.00 0.00 3.58
1338 1412 1.801913 CGGAAGAACTCCTCGCACG 60.802 63.158 0.00 0.00 42.85 5.34
1363 1437 2.444256 GGCCACCTTATCCTCCGCT 61.444 63.158 0.00 0.00 0.00 5.52
1372 1446 1.006281 TCCGAGTAGAAGGCCACCTTA 59.994 52.381 5.01 0.00 44.82 2.69
1414 1488 0.178921 AGGTGGTGCTGGAGAAGAGA 60.179 55.000 0.00 0.00 0.00 3.10
1444 1518 2.571757 CGCCAGTACTTCTCGCCA 59.428 61.111 0.00 0.00 0.00 5.69
1549 1623 8.104566 TCATATGATATGATTGAGTTGGCATCA 58.895 33.333 10.93 0.00 0.00 3.07
1597 1671 2.164338 CGGGATCCCCTTTTCGAAAAA 58.836 47.619 25.73 9.71 42.67 1.94
1598 1672 1.614850 CCGGGATCCCCTTTTCGAAAA 60.615 52.381 25.73 21.35 42.67 2.29
1599 1673 0.034863 CCGGGATCCCCTTTTCGAAA 60.035 55.000 25.73 6.47 42.67 3.46
1600 1674 1.605453 CCGGGATCCCCTTTTCGAA 59.395 57.895 25.73 0.00 42.67 3.71
1601 1675 3.038945 GCCGGGATCCCCTTTTCGA 62.039 63.158 25.73 0.00 42.67 3.71
1602 1676 2.516225 GCCGGGATCCCCTTTTCG 60.516 66.667 25.73 11.89 42.67 3.46
1603 1677 2.123854 GGCCGGGATCCCCTTTTC 60.124 66.667 25.73 9.28 42.67 2.29
1604 1678 2.617215 AGGCCGGGATCCCCTTTT 60.617 61.111 25.73 5.94 42.67 2.27
1605 1679 3.097162 GAGGCCGGGATCCCCTTT 61.097 66.667 25.73 8.33 42.67 3.11
1606 1680 4.109656 AGAGGCCGGGATCCCCTT 62.110 66.667 25.73 8.39 42.67 3.95
1607 1681 4.888325 CAGAGGCCGGGATCCCCT 62.888 72.222 25.73 16.43 42.67 4.79
1610 1684 3.543536 GATGCAGAGGCCGGGATCC 62.544 68.421 1.92 1.92 40.13 3.36
1611 1685 2.031768 GATGCAGAGGCCGGGATC 59.968 66.667 2.18 9.94 40.13 3.36
1612 1686 2.769621 TGATGCAGAGGCCGGGAT 60.770 61.111 2.18 0.00 40.13 3.85
1613 1687 3.473647 CTGATGCAGAGGCCGGGA 61.474 66.667 2.18 0.00 40.13 5.14
1615 1689 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
1626 1700 1.162698 GCCGTATGCATCATGCTGAT 58.837 50.000 11.84 0.00 45.31 2.90
1627 1701 0.886043 GGCCGTATGCATCATGCTGA 60.886 55.000 11.84 0.00 45.31 4.26
1628 1702 1.167781 TGGCCGTATGCATCATGCTG 61.168 55.000 11.84 0.00 45.31 4.41
1629 1703 0.251033 ATGGCCGTATGCATCATGCT 60.251 50.000 11.84 0.00 45.31 3.79
1630 1704 0.169672 GATGGCCGTATGCATCATGC 59.830 55.000 0.19 1.35 45.29 4.06
1631 1705 1.817357 AGATGGCCGTATGCATCATG 58.183 50.000 0.19 0.00 43.89 3.07
1632 1706 2.574006 AAGATGGCCGTATGCATCAT 57.426 45.000 0.19 0.00 43.89 2.45
1633 1707 3.701205 ATAAGATGGCCGTATGCATCA 57.299 42.857 0.19 0.00 43.89 3.07
1634 1708 5.411361 TGTTAATAAGATGGCCGTATGCATC 59.589 40.000 0.19 0.00 43.89 3.91
1635 1709 5.312895 TGTTAATAAGATGGCCGTATGCAT 58.687 37.500 3.79 3.79 43.89 3.96
1636 1710 4.709250 TGTTAATAAGATGGCCGTATGCA 58.291 39.130 0.00 0.00 43.89 3.96
1637 1711 5.682943 TTGTTAATAAGATGGCCGTATGC 57.317 39.130 0.00 0.00 40.16 3.14
1640 1714 9.562408 TGATTTATTGTTAATAAGATGGCCGTA 57.438 29.630 0.00 0.00 35.00 4.02
1641 1715 8.458573 TGATTTATTGTTAATAAGATGGCCGT 57.541 30.769 0.00 0.00 35.00 5.68
1642 1716 9.559958 GATGATTTATTGTTAATAAGATGGCCG 57.440 33.333 0.00 0.00 35.00 6.13
1643 1717 9.860898 GGATGATTTATTGTTAATAAGATGGCC 57.139 33.333 0.00 0.00 35.00 5.36
1652 1726 9.479549 AGACCTTGTGGATGATTTATTGTTAAT 57.520 29.630 0.00 0.00 37.04 1.40
1653 1727 8.877864 AGACCTTGTGGATGATTTATTGTTAA 57.122 30.769 0.00 0.00 37.04 2.01
1654 1728 7.279981 CGAGACCTTGTGGATGATTTATTGTTA 59.720 37.037 0.00 0.00 37.04 2.41
1655 1729 6.094048 CGAGACCTTGTGGATGATTTATTGTT 59.906 38.462 0.00 0.00 37.04 2.83
1656 1730 5.586243 CGAGACCTTGTGGATGATTTATTGT 59.414 40.000 0.00 0.00 37.04 2.71
1657 1731 5.817296 TCGAGACCTTGTGGATGATTTATTG 59.183 40.000 0.00 0.00 37.04 1.90
1658 1732 5.989477 TCGAGACCTTGTGGATGATTTATT 58.011 37.500 0.00 0.00 37.04 1.40
1659 1733 5.614324 TCGAGACCTTGTGGATGATTTAT 57.386 39.130 0.00 0.00 37.04 1.40
1660 1734 5.414789 TTCGAGACCTTGTGGATGATTTA 57.585 39.130 0.00 0.00 37.04 1.40
1661 1735 3.981071 TCGAGACCTTGTGGATGATTT 57.019 42.857 0.00 0.00 37.04 2.17
1662 1736 3.981071 TTCGAGACCTTGTGGATGATT 57.019 42.857 0.00 0.00 37.04 2.57
1663 1737 3.981071 TTTCGAGACCTTGTGGATGAT 57.019 42.857 0.00 0.00 37.04 2.45
1664 1738 3.515502 AGATTTCGAGACCTTGTGGATGA 59.484 43.478 0.00 0.00 37.04 2.92
1665 1739 3.866651 AGATTTCGAGACCTTGTGGATG 58.133 45.455 0.00 0.00 37.04 3.51
1666 1740 3.515502 TGAGATTTCGAGACCTTGTGGAT 59.484 43.478 0.00 0.00 37.04 3.41
1667 1741 2.897326 TGAGATTTCGAGACCTTGTGGA 59.103 45.455 0.00 0.00 37.04 4.02
1668 1742 3.319137 TGAGATTTCGAGACCTTGTGG 57.681 47.619 0.00 0.00 39.83 4.17
1669 1743 5.237344 ACTTTTGAGATTTCGAGACCTTGTG 59.763 40.000 0.00 0.00 0.00 3.33
1670 1744 5.368989 ACTTTTGAGATTTCGAGACCTTGT 58.631 37.500 0.00 0.00 0.00 3.16
1671 1745 5.931441 ACTTTTGAGATTTCGAGACCTTG 57.069 39.130 0.00 0.00 0.00 3.61
1672 1746 6.760291 ACTACTTTTGAGATTTCGAGACCTT 58.240 36.000 0.00 0.00 0.00 3.50
1673 1747 6.347859 ACTACTTTTGAGATTTCGAGACCT 57.652 37.500 0.00 0.00 0.00 3.85
1674 1748 8.530269 TTTACTACTTTTGAGATTTCGAGACC 57.470 34.615 0.00 0.00 0.00 3.85
1697 1771 9.481340 GTGAGCCTTTCTTCTTCATTTTATTTT 57.519 29.630 0.00 0.00 0.00 1.82
1698 1772 8.641541 TGTGAGCCTTTCTTCTTCATTTTATTT 58.358 29.630 0.00 0.00 0.00 1.40
1699 1773 8.084684 GTGTGAGCCTTTCTTCTTCATTTTATT 58.915 33.333 0.00 0.00 0.00 1.40
1700 1774 7.231317 TGTGTGAGCCTTTCTTCTTCATTTTAT 59.769 33.333 0.00 0.00 0.00 1.40
1701 1775 6.545666 TGTGTGAGCCTTTCTTCTTCATTTTA 59.454 34.615 0.00 0.00 0.00 1.52
1702 1776 5.360714 TGTGTGAGCCTTTCTTCTTCATTTT 59.639 36.000 0.00 0.00 0.00 1.82
1703 1777 4.889409 TGTGTGAGCCTTTCTTCTTCATTT 59.111 37.500 0.00 0.00 0.00 2.32
1704 1778 4.464008 TGTGTGAGCCTTTCTTCTTCATT 58.536 39.130 0.00 0.00 0.00 2.57
1705 1779 4.070716 CTGTGTGAGCCTTTCTTCTTCAT 58.929 43.478 0.00 0.00 0.00 2.57
1706 1780 3.134623 TCTGTGTGAGCCTTTCTTCTTCA 59.865 43.478 0.00 0.00 0.00 3.02
1707 1781 3.733337 TCTGTGTGAGCCTTTCTTCTTC 58.267 45.455 0.00 0.00 0.00 2.87
1708 1782 3.737850 CTCTGTGTGAGCCTTTCTTCTT 58.262 45.455 0.00 0.00 35.84 2.52
1709 1783 3.399440 CTCTGTGTGAGCCTTTCTTCT 57.601 47.619 0.00 0.00 35.84 2.85
1719 1793 1.864862 CCTTTGCGCTCTGTGTGAG 59.135 57.895 9.73 0.00 45.33 3.51
1720 1794 2.253758 GCCTTTGCGCTCTGTGTGA 61.254 57.895 9.73 0.00 0.00 3.58
1721 1795 0.950555 TAGCCTTTGCGCTCTGTGTG 60.951 55.000 9.73 0.00 44.33 3.82
1722 1796 0.671781 CTAGCCTTTGCGCTCTGTGT 60.672 55.000 9.73 0.00 44.33 3.72
1723 1797 0.390340 TCTAGCCTTTGCGCTCTGTG 60.390 55.000 9.73 0.00 44.33 3.66
1724 1798 0.539051 ATCTAGCCTTTGCGCTCTGT 59.461 50.000 9.73 0.00 44.33 3.41
1725 1799 2.131183 GTATCTAGCCTTTGCGCTCTG 58.869 52.381 9.73 0.00 44.33 3.35
1726 1800 1.757118 TGTATCTAGCCTTTGCGCTCT 59.243 47.619 9.73 0.35 44.33 4.09
1727 1801 1.861575 GTGTATCTAGCCTTTGCGCTC 59.138 52.381 9.73 0.00 44.33 5.03
1728 1802 1.207089 TGTGTATCTAGCCTTTGCGCT 59.793 47.619 9.73 0.00 44.33 5.92
1729 1803 1.651987 TGTGTATCTAGCCTTTGCGC 58.348 50.000 0.00 0.00 44.33 6.09
1730 1804 2.030946 GCTTGTGTATCTAGCCTTTGCG 59.969 50.000 0.00 0.00 44.33 4.85
1731 1805 3.274288 AGCTTGTGTATCTAGCCTTTGC 58.726 45.455 0.00 0.00 43.81 3.68
1732 1806 4.509600 GCTAGCTTGTGTATCTAGCCTTTG 59.490 45.833 7.70 0.00 45.70 2.77
1733 1807 4.698575 GCTAGCTTGTGTATCTAGCCTTT 58.301 43.478 7.70 0.00 45.70 3.11
1734 1808 4.329462 GCTAGCTTGTGTATCTAGCCTT 57.671 45.455 7.70 0.00 45.70 4.35
1738 1812 8.662781 TTTATTTGGCTAGCTTGTGTATCTAG 57.337 34.615 15.72 0.00 34.45 2.43
1739 1813 7.715249 CCTTTATTTGGCTAGCTTGTGTATCTA 59.285 37.037 15.72 0.00 0.00 1.98
1740 1814 6.543831 CCTTTATTTGGCTAGCTTGTGTATCT 59.456 38.462 15.72 0.00 0.00 1.98
1741 1815 6.542370 TCCTTTATTTGGCTAGCTTGTGTATC 59.458 38.462 15.72 0.00 0.00 2.24
1742 1816 6.423182 TCCTTTATTTGGCTAGCTTGTGTAT 58.577 36.000 15.72 3.04 0.00 2.29
1743 1817 5.811190 TCCTTTATTTGGCTAGCTTGTGTA 58.189 37.500 15.72 0.00 0.00 2.90
1744 1818 4.662278 TCCTTTATTTGGCTAGCTTGTGT 58.338 39.130 15.72 0.20 0.00 3.72
1745 1819 5.841957 ATCCTTTATTTGGCTAGCTTGTG 57.158 39.130 15.72 0.00 0.00 3.33
1746 1820 7.147897 GGTTTATCCTTTATTTGGCTAGCTTGT 60.148 37.037 15.72 1.29 0.00 3.16
1747 1821 7.147915 TGGTTTATCCTTTATTTGGCTAGCTTG 60.148 37.037 15.72 0.00 37.07 4.01
1748 1822 6.895204 TGGTTTATCCTTTATTTGGCTAGCTT 59.105 34.615 15.72 0.02 37.07 3.74
1749 1823 6.321435 GTGGTTTATCCTTTATTTGGCTAGCT 59.679 38.462 15.72 0.00 37.07 3.32
1750 1824 6.096282 TGTGGTTTATCCTTTATTTGGCTAGC 59.904 38.462 6.04 6.04 37.07 3.42
1751 1825 7.639113 TGTGGTTTATCCTTTATTTGGCTAG 57.361 36.000 0.00 0.00 37.07 3.42
1752 1826 7.093684 GGTTGTGGTTTATCCTTTATTTGGCTA 60.094 37.037 0.00 0.00 37.07 3.93
1753 1827 6.295632 GGTTGTGGTTTATCCTTTATTTGGCT 60.296 38.462 0.00 0.00 37.07 4.75
1754 1828 5.872617 GGTTGTGGTTTATCCTTTATTTGGC 59.127 40.000 0.00 0.00 37.07 4.52
1755 1829 6.096695 CGGTTGTGGTTTATCCTTTATTTGG 58.903 40.000 0.00 0.00 37.07 3.28
1756 1830 6.096695 CCGGTTGTGGTTTATCCTTTATTTG 58.903 40.000 0.00 0.00 37.07 2.32
1757 1831 5.776208 ACCGGTTGTGGTTTATCCTTTATTT 59.224 36.000 0.00 0.00 39.99 1.40
1758 1832 5.326900 ACCGGTTGTGGTTTATCCTTTATT 58.673 37.500 0.00 0.00 39.99 1.40
1759 1833 4.925836 ACCGGTTGTGGTTTATCCTTTAT 58.074 39.130 0.00 0.00 39.99 1.40
1760 1834 4.370094 ACCGGTTGTGGTTTATCCTTTA 57.630 40.909 0.00 0.00 39.99 1.85
1761 1835 3.232720 ACCGGTTGTGGTTTATCCTTT 57.767 42.857 0.00 0.00 39.99 3.11
1762 1836 2.963599 ACCGGTTGTGGTTTATCCTT 57.036 45.000 0.00 0.00 39.99 3.36
1770 1844 2.203294 GAGCCAACCGGTTGTGGT 60.203 61.111 37.97 32.98 46.67 4.16
1771 1845 1.388065 TTTGAGCCAACCGGTTGTGG 61.388 55.000 37.97 29.25 38.85 4.17
1772 1846 0.457851 TTTTGAGCCAACCGGTTGTG 59.542 50.000 37.97 30.31 38.85 3.33
1773 1847 1.187087 TTTTTGAGCCAACCGGTTGT 58.813 45.000 37.97 25.42 38.85 3.32
1774 1848 2.524569 ATTTTTGAGCCAACCGGTTG 57.475 45.000 35.60 35.60 40.13 3.77
1775 1849 3.254903 GTCTATTTTTGAGCCAACCGGTT 59.745 43.478 15.86 15.86 33.28 4.44
1776 1850 2.817844 GTCTATTTTTGAGCCAACCGGT 59.182 45.455 0.00 0.00 33.28 5.28
1777 1851 2.817258 TGTCTATTTTTGAGCCAACCGG 59.183 45.455 0.00 0.00 0.00 5.28
1778 1852 3.119849 CCTGTCTATTTTTGAGCCAACCG 60.120 47.826 0.00 0.00 0.00 4.44
1779 1853 3.826729 ACCTGTCTATTTTTGAGCCAACC 59.173 43.478 0.00 0.00 0.00 3.77
1780 1854 6.569179 TTACCTGTCTATTTTTGAGCCAAC 57.431 37.500 0.00 0.00 0.00 3.77
1781 1855 6.775629 AGTTTACCTGTCTATTTTTGAGCCAA 59.224 34.615 0.00 0.00 0.00 4.52
1782 1856 6.303839 AGTTTACCTGTCTATTTTTGAGCCA 58.696 36.000 0.00 0.00 0.00 4.75
1783 1857 6.819397 AGTTTACCTGTCTATTTTTGAGCC 57.181 37.500 0.00 0.00 0.00 4.70
1792 1866 9.780186 GGATAAGCAATTAGTTTACCTGTCTAT 57.220 33.333 0.00 0.00 0.00 1.98
1793 1867 8.989131 AGGATAAGCAATTAGTTTACCTGTCTA 58.011 33.333 0.00 0.00 29.87 2.59
1794 1868 7.862675 AGGATAAGCAATTAGTTTACCTGTCT 58.137 34.615 0.00 0.00 29.87 3.41
1795 1869 9.780186 ATAGGATAAGCAATTAGTTTACCTGTC 57.220 33.333 0.00 0.00 31.82 3.51
1804 1878 9.726438 GGTCATGTAATAGGATAAGCAATTAGT 57.274 33.333 0.00 0.00 0.00 2.24
1805 1879 8.873830 CGGTCATGTAATAGGATAAGCAATTAG 58.126 37.037 0.00 0.00 0.00 1.73
1806 1880 8.372459 ACGGTCATGTAATAGGATAAGCAATTA 58.628 33.333 0.00 0.00 0.00 1.40
1807 1881 7.224297 ACGGTCATGTAATAGGATAAGCAATT 58.776 34.615 0.00 0.00 0.00 2.32
1808 1882 6.769512 ACGGTCATGTAATAGGATAAGCAAT 58.230 36.000 0.00 0.00 0.00 3.56
1809 1883 6.169557 ACGGTCATGTAATAGGATAAGCAA 57.830 37.500 0.00 0.00 0.00 3.91
1810 1884 5.303333 TGACGGTCATGTAATAGGATAAGCA 59.697 40.000 6.76 0.00 0.00 3.91
1811 1885 5.779922 TGACGGTCATGTAATAGGATAAGC 58.220 41.667 6.76 0.00 0.00 3.09
1812 1886 7.036220 GGATGACGGTCATGTAATAGGATAAG 58.964 42.308 27.11 0.00 37.20 1.73
1813 1887 6.495526 TGGATGACGGTCATGTAATAGGATAA 59.504 38.462 27.11 0.00 37.20 1.75
1814 1888 6.014012 TGGATGACGGTCATGTAATAGGATA 58.986 40.000 27.11 0.00 37.20 2.59
1815 1889 4.838423 TGGATGACGGTCATGTAATAGGAT 59.162 41.667 27.11 0.56 37.20 3.24
1816 1890 4.219919 TGGATGACGGTCATGTAATAGGA 58.780 43.478 27.11 0.00 37.20 2.94
1817 1891 4.600692 TGGATGACGGTCATGTAATAGG 57.399 45.455 27.11 0.00 37.20 2.57
1818 1892 5.236478 GGTTTGGATGACGGTCATGTAATAG 59.764 44.000 27.11 0.00 37.20 1.73
1819 1893 5.120399 GGTTTGGATGACGGTCATGTAATA 58.880 41.667 27.11 6.86 37.20 0.98
1820 1894 3.945285 GGTTTGGATGACGGTCATGTAAT 59.055 43.478 27.11 4.51 37.20 1.89
1821 1895 3.340034 GGTTTGGATGACGGTCATGTAA 58.660 45.455 27.11 17.74 37.20 2.41
1822 1896 2.675603 CGGTTTGGATGACGGTCATGTA 60.676 50.000 27.11 13.12 37.20 2.29
1823 1897 1.821216 GGTTTGGATGACGGTCATGT 58.179 50.000 27.11 6.13 37.20 3.21
1824 1898 0.726827 CGGTTTGGATGACGGTCATG 59.273 55.000 27.11 8.03 37.20 3.07
1825 1899 0.392461 CCGGTTTGGATGACGGTCAT 60.392 55.000 22.84 22.84 42.00 3.06
1826 1900 1.004320 CCGGTTTGGATGACGGTCA 60.004 57.895 14.01 14.01 42.00 4.02
1827 1901 3.884900 CCGGTTTGGATGACGGTC 58.115 61.111 0.00 0.00 42.00 4.79
1834 1908 3.496870 GGATATCTTCAGCCGGTTTGGAT 60.497 47.826 1.90 3.06 42.00 3.41
1835 1909 2.158813 GGATATCTTCAGCCGGTTTGGA 60.159 50.000 1.90 0.00 42.00 3.53
1836 1910 2.222027 GGATATCTTCAGCCGGTTTGG 58.778 52.381 1.90 0.00 42.50 3.28
1837 1911 2.222027 GGGATATCTTCAGCCGGTTTG 58.778 52.381 1.90 2.01 0.00 2.93
1838 1912 1.202651 CGGGATATCTTCAGCCGGTTT 60.203 52.381 1.90 0.00 0.00 3.27
1839 1913 0.393077 CGGGATATCTTCAGCCGGTT 59.607 55.000 1.90 0.00 0.00 4.44
1840 1914 0.469331 TCGGGATATCTTCAGCCGGT 60.469 55.000 14.77 0.00 32.05 5.28
1841 1915 0.244994 CTCGGGATATCTTCAGCCGG 59.755 60.000 14.77 0.00 32.05 6.13
1842 1916 0.389166 GCTCGGGATATCTTCAGCCG 60.389 60.000 10.16 10.16 32.31 5.52
1843 1917 0.972883 AGCTCGGGATATCTTCAGCC 59.027 55.000 13.43 1.95 0.00 4.85
1844 1918 2.094442 GGTAGCTCGGGATATCTTCAGC 60.094 54.545 2.05 7.34 0.00 4.26
1845 1919 2.162608 CGGTAGCTCGGGATATCTTCAG 59.837 54.545 2.05 0.00 0.00 3.02
1846 1920 2.160205 CGGTAGCTCGGGATATCTTCA 58.840 52.381 2.05 0.00 0.00 3.02
1847 1921 2.161030 ACGGTAGCTCGGGATATCTTC 58.839 52.381 2.05 0.00 0.00 2.87
1848 1922 2.289592 ACGGTAGCTCGGGATATCTT 57.710 50.000 2.05 0.00 0.00 2.40
1849 1923 2.289592 AACGGTAGCTCGGGATATCT 57.710 50.000 2.05 0.00 0.00 1.98
1850 1924 2.352519 GGAAACGGTAGCTCGGGATATC 60.353 54.545 0.00 0.00 0.00 1.63
1851 1925 1.617357 GGAAACGGTAGCTCGGGATAT 59.383 52.381 0.00 0.00 0.00 1.63
1852 1926 1.035139 GGAAACGGTAGCTCGGGATA 58.965 55.000 0.00 0.00 0.00 2.59
1853 1927 1.683418 GGGAAACGGTAGCTCGGGAT 61.683 60.000 0.00 0.00 0.00 3.85
1854 1928 2.353610 GGGAAACGGTAGCTCGGGA 61.354 63.158 0.00 0.00 0.00 5.14
1855 1929 1.968050 ATGGGAAACGGTAGCTCGGG 61.968 60.000 0.00 0.00 0.00 5.14
1856 1930 0.529992 GATGGGAAACGGTAGCTCGG 60.530 60.000 0.00 0.00 0.00 4.63
1857 1931 0.870307 CGATGGGAAACGGTAGCTCG 60.870 60.000 0.00 0.00 0.00 5.03
1858 1932 0.529992 CCGATGGGAAACGGTAGCTC 60.530 60.000 0.00 0.00 43.53 4.09
1859 1933 1.520666 CCGATGGGAAACGGTAGCT 59.479 57.895 0.00 0.00 43.53 3.32
1860 1934 4.120085 CCGATGGGAAACGGTAGC 57.880 61.111 0.00 0.00 43.53 3.58
1936 2025 2.202716 CTGCAGCGCACTCGAGAT 60.203 61.111 21.68 0.00 38.10 2.75
1947 2036 3.730761 CAACCACCTCGCTGCAGC 61.731 66.667 29.12 29.12 37.78 5.25
1963 2052 1.176619 TCGGCTCCACGAACTTCTCA 61.177 55.000 0.00 0.00 40.34 3.27
1989 2078 4.864334 GCAGCTCCATCCCCACGG 62.864 72.222 0.00 0.00 0.00 4.94
2089 2179 2.740826 CACGGCGGGTAGTGGTTG 60.741 66.667 13.24 0.00 34.93 3.77
2188 2278 1.762858 GTAGGAGACCTGGAGGCCC 60.763 68.421 0.00 0.00 39.32 5.80
2305 2405 4.445452 TGAAAAATGAGCAATCTGAGGC 57.555 40.909 0.00 0.00 0.00 4.70
2357 2458 3.916035 ACTATCAGTCAGCCTGGTGATA 58.084 45.455 13.66 13.66 41.83 2.15
2367 2468 8.489990 ACATCAAGAAATGAACTATCAGTCAG 57.510 34.615 0.00 0.00 42.54 3.51
2650 2758 6.805016 ATCAGAATCAGATACAGGTGAACT 57.195 37.500 0.00 0.00 0.00 3.01
2669 2777 5.279406 CCCAGTAGCTAGATCTCCAAATCAG 60.279 48.000 0.00 0.00 0.00 2.90
2670 2778 4.590647 CCCAGTAGCTAGATCTCCAAATCA 59.409 45.833 0.00 0.00 0.00 2.57
2673 2781 4.265856 TCCCAGTAGCTAGATCTCCAAA 57.734 45.455 0.00 0.00 0.00 3.28
2724 2861 4.398358 GCTTTTCTTTTTACTCCGGCCTAT 59.602 41.667 0.00 0.00 0.00 2.57
2729 2866 4.976116 CAGTTGCTTTTCTTTTTACTCCGG 59.024 41.667 0.00 0.00 0.00 5.14
2741 2886 4.293415 CTCACAATCACCAGTTGCTTTTC 58.707 43.478 0.00 0.00 0.00 2.29
2799 2944 8.084073 CACACATTGAACTTGTATTCTGGAATT 58.916 33.333 1.01 0.00 32.50 2.17
2804 2949 6.373779 GGACACACATTGAACTTGTATTCTG 58.626 40.000 0.00 0.00 0.00 3.02
2835 3001 2.348362 TGCGTGTCATGTTTCGATGATC 59.652 45.455 9.41 0.00 34.86 2.92
2854 3020 8.310382 TGCCTATCTTTAGAATCTAAGATCTGC 58.690 37.037 14.01 15.82 40.55 4.26
2870 3036 6.205464 CCGTGAACATCATAATGCCTATCTTT 59.795 38.462 0.00 0.00 36.26 2.52
2876 3042 1.949525 GCCGTGAACATCATAATGCCT 59.050 47.619 0.00 0.00 36.26 4.75
2877 3043 1.334059 CGCCGTGAACATCATAATGCC 60.334 52.381 0.00 0.00 36.26 4.40
2879 3045 1.334059 GCCGCCGTGAACATCATAATG 60.334 52.381 0.00 0.00 38.93 1.90
2880 3046 0.944386 GCCGCCGTGAACATCATAAT 59.056 50.000 0.00 0.00 0.00 1.28
2881 3047 0.391793 TGCCGCCGTGAACATCATAA 60.392 50.000 0.00 0.00 0.00 1.90
2883 3049 1.031571 ATTGCCGCCGTGAACATCAT 61.032 50.000 0.00 0.00 0.00 2.45
2884 3050 1.673993 ATTGCCGCCGTGAACATCA 60.674 52.632 0.00 0.00 0.00 3.07
2885 3051 1.226379 CATTGCCGCCGTGAACATC 60.226 57.895 0.00 0.00 0.00 3.06
2886 3052 1.971167 ACATTGCCGCCGTGAACAT 60.971 52.632 0.00 0.00 0.00 2.71
2887 3053 2.593148 ACATTGCCGCCGTGAACA 60.593 55.556 0.00 0.00 0.00 3.18
2888 3054 1.922135 ATCACATTGCCGCCGTGAAC 61.922 55.000 10.36 0.00 42.53 3.18
2889 3055 1.643868 GATCACATTGCCGCCGTGAA 61.644 55.000 10.36 0.00 42.53 3.18
2890 3056 2.046411 ATCACATTGCCGCCGTGA 60.046 55.556 9.12 9.12 43.35 4.35
2891 3057 1.717791 ATGATCACATTGCCGCCGTG 61.718 55.000 0.00 0.00 32.21 4.94
2892 3058 1.439353 GATGATCACATTGCCGCCGT 61.439 55.000 0.00 0.00 36.82 5.68
2893 3059 1.280746 GATGATCACATTGCCGCCG 59.719 57.895 0.00 0.00 36.82 6.46
2894 3060 0.740149 TTGATGATCACATTGCCGCC 59.260 50.000 0.00 0.00 36.82 6.13
2895 3061 1.831343 GTTGATGATCACATTGCCGC 58.169 50.000 0.00 0.00 36.82 6.53
2896 3062 1.398041 ACGTTGATGATCACATTGCCG 59.602 47.619 0.00 0.00 36.82 5.69
2897 3063 3.492421 AACGTTGATGATCACATTGCC 57.508 42.857 0.00 0.00 36.82 4.52
2898 3064 4.793216 GGTTAACGTTGATGATCACATTGC 59.207 41.667 11.99 0.00 36.82 3.56
2899 3065 5.794945 GTGGTTAACGTTGATGATCACATTG 59.205 40.000 11.99 0.00 36.82 2.82
2900 3066 5.705441 AGTGGTTAACGTTGATGATCACATT 59.295 36.000 11.99 0.00 36.82 2.71
2901 3067 5.245531 AGTGGTTAACGTTGATGATCACAT 58.754 37.500 11.99 0.00 39.67 3.21
2902 3068 4.637276 AGTGGTTAACGTTGATGATCACA 58.363 39.130 11.99 0.00 0.00 3.58
2903 3069 5.636121 TGTAGTGGTTAACGTTGATGATCAC 59.364 40.000 11.99 10.51 0.00 3.06
2904 3070 5.636121 GTGTAGTGGTTAACGTTGATGATCA 59.364 40.000 11.99 0.00 0.00 2.92
2905 3071 5.220154 CGTGTAGTGGTTAACGTTGATGATC 60.220 44.000 11.99 0.00 0.00 2.92
2906 3072 4.624024 CGTGTAGTGGTTAACGTTGATGAT 59.376 41.667 11.99 0.00 0.00 2.45
2907 3073 3.982701 CGTGTAGTGGTTAACGTTGATGA 59.017 43.478 11.99 0.00 0.00 2.92
2908 3074 3.422603 GCGTGTAGTGGTTAACGTTGATG 60.423 47.826 11.99 0.00 38.28 3.07
2909 3075 2.733026 GCGTGTAGTGGTTAACGTTGAT 59.267 45.455 11.99 0.00 38.28 2.57
2910 3076 2.126467 GCGTGTAGTGGTTAACGTTGA 58.874 47.619 11.99 0.00 38.28 3.18
2911 3077 1.192980 GGCGTGTAGTGGTTAACGTTG 59.807 52.381 11.99 0.00 38.28 4.10
2912 3078 1.202510 TGGCGTGTAGTGGTTAACGTT 60.203 47.619 5.88 5.88 38.28 3.99
2913 3079 0.388659 TGGCGTGTAGTGGTTAACGT 59.611 50.000 0.00 0.00 38.28 3.99
2914 3080 1.392168 CATGGCGTGTAGTGGTTAACG 59.608 52.381 0.00 0.00 39.00 3.18
2915 3081 2.690786 TCATGGCGTGTAGTGGTTAAC 58.309 47.619 6.60 0.00 0.00 2.01
2916 3082 3.068560 GTTCATGGCGTGTAGTGGTTAA 58.931 45.455 6.60 0.00 0.00 2.01
2917 3083 2.037381 TGTTCATGGCGTGTAGTGGTTA 59.963 45.455 6.60 0.00 0.00 2.85
2918 3084 1.202710 TGTTCATGGCGTGTAGTGGTT 60.203 47.619 6.60 0.00 0.00 3.67
2919 3085 0.394938 TGTTCATGGCGTGTAGTGGT 59.605 50.000 6.60 0.00 0.00 4.16
2920 3086 1.665679 GATGTTCATGGCGTGTAGTGG 59.334 52.381 6.60 0.00 0.00 4.00
2921 3087 2.345876 TGATGTTCATGGCGTGTAGTG 58.654 47.619 6.60 0.00 0.00 2.74
2922 3088 2.760634 TGATGTTCATGGCGTGTAGT 57.239 45.000 6.60 0.00 0.00 2.73
2923 3089 5.682869 CATTATGATGTTCATGGCGTGTAG 58.317 41.667 6.60 0.00 37.70 2.74
2924 3090 4.024133 GCATTATGATGTTCATGGCGTGTA 60.024 41.667 6.60 0.00 37.70 2.90
2925 3091 3.243168 GCATTATGATGTTCATGGCGTGT 60.243 43.478 6.60 0.00 37.70 4.49
2926 3092 3.302555 GCATTATGATGTTCATGGCGTG 58.697 45.455 0.00 0.00 37.70 5.34
2927 3093 2.294233 GGCATTATGATGTTCATGGCGT 59.706 45.455 0.00 0.00 37.70 5.68
2928 3094 2.555325 AGGCATTATGATGTTCATGGCG 59.445 45.455 0.00 0.00 37.70 5.69
2929 3095 5.651139 AGATAGGCATTATGATGTTCATGGC 59.349 40.000 0.00 0.00 37.70 4.40
2930 3096 6.318144 GGAGATAGGCATTATGATGTTCATGG 59.682 42.308 0.00 0.00 37.70 3.66
2931 3097 6.882678 TGGAGATAGGCATTATGATGTTCATG 59.117 38.462 0.00 0.00 37.70 3.07
2932 3098 7.024345 TGGAGATAGGCATTATGATGTTCAT 57.976 36.000 0.00 0.00 40.72 2.57
2933 3099 6.438186 TGGAGATAGGCATTATGATGTTCA 57.562 37.500 0.00 0.00 35.63 3.18
2934 3100 7.148120 CCAATGGAGATAGGCATTATGATGTTC 60.148 40.741 0.00 0.00 35.63 3.18
2935 3101 6.662234 CCAATGGAGATAGGCATTATGATGTT 59.338 38.462 0.00 0.00 35.63 2.71
2985 4802 3.752796 CTCGGGCGGAGAATGTTAA 57.247 52.632 16.33 0.00 46.23 2.01
2995 4812 3.204827 CATTTGGCTCTCGGGCGG 61.205 66.667 0.00 0.00 44.11 6.13
3114 4931 0.326264 AATGACCAGAAAGAGGCGCT 59.674 50.000 7.64 0.00 0.00 5.92
3131 4948 2.111384 AGGTGGCTGATGTCGAGTAAT 58.889 47.619 0.00 0.00 0.00 1.89
3151 4968 0.107643 TCGCCAATCCGCCATGATTA 59.892 50.000 0.00 0.00 33.27 1.75
3198 5015 1.746615 CCCGATTCAGGTGGTGCTG 60.747 63.158 0.00 0.00 0.00 4.41
3201 5018 1.221840 CCTCCCGATTCAGGTGGTG 59.778 63.158 0.00 0.00 34.04 4.17
3207 5024 0.460284 CGTGTTCCCTCCCGATTCAG 60.460 60.000 0.00 0.00 0.00 3.02
3227 5434 3.041940 CGTTGACAGCCACGGGAC 61.042 66.667 0.00 0.00 0.00 4.46
3302 5509 0.539986 ATACGGGTGATGCGTCCTTT 59.460 50.000 2.83 0.00 0.00 3.11
3360 5567 1.202830 TGGTGGTGGTTTATGCGACTT 60.203 47.619 0.00 0.00 0.00 3.01
3381 5588 0.392461 GTGTGGTGAGTGGTGTGTGT 60.392 55.000 0.00 0.00 0.00 3.72
3384 5591 2.534019 GCGTGTGGTGAGTGGTGTG 61.534 63.158 0.00 0.00 0.00 3.82
3385 5592 2.203015 GCGTGTGGTGAGTGGTGT 60.203 61.111 0.00 0.00 0.00 4.16
3386 5593 1.597854 ATGCGTGTGGTGAGTGGTG 60.598 57.895 0.00 0.00 0.00 4.17
3387 5594 1.597854 CATGCGTGTGGTGAGTGGT 60.598 57.895 0.00 0.00 0.00 4.16
3388 5595 1.568612 GACATGCGTGTGGTGAGTGG 61.569 60.000 18.17 0.00 39.09 4.00
3389 5596 1.568612 GGACATGCGTGTGGTGAGTG 61.569 60.000 18.17 0.00 39.09 3.51
3392 5599 2.356913 CGGACATGCGTGTGGTGA 60.357 61.111 18.17 0.00 39.09 4.02
3393 5600 4.088762 GCGGACATGCGTGTGGTG 62.089 66.667 18.17 6.85 39.09 4.17
3401 5608 4.256090 GGAATGCGGCGGACATGC 62.256 66.667 9.78 2.62 0.00 4.06
3415 5622 0.613260 CCGAGAAGGATGTGGTGGAA 59.387 55.000 0.00 0.00 45.00 3.53
3424 5631 1.299976 GTGTTGCCCCGAGAAGGAT 59.700 57.895 0.00 0.00 45.00 3.24
3439 5646 2.231380 GGATGGAGGTGGTGGGTGT 61.231 63.158 0.00 0.00 0.00 4.16
3446 5653 0.469331 TAGCTACCGGATGGAGGTGG 60.469 60.000 9.46 0.00 42.83 4.61
3457 5664 2.518825 AGGGCCGACTAGCTACCG 60.519 66.667 0.00 0.00 0.00 4.02
3458 5665 2.201708 GGAGGGCCGACTAGCTACC 61.202 68.421 0.00 0.00 0.00 3.18
3484 5693 0.389817 GCTCGGGTTGGCCAAATTTC 60.390 55.000 22.47 7.60 36.17 2.17
3486 5695 2.635443 CGCTCGGGTTGGCCAAATT 61.635 57.895 22.47 0.00 36.17 1.82
3535 5744 4.021631 CACGCAGCAGCCACACAG 62.022 66.667 0.00 0.00 37.52 3.66
3584 5794 3.129502 CCTGGAGTGTGCCGCATG 61.130 66.667 0.00 0.00 0.00 4.06
3598 5808 0.599558 CAAGTGGAATGTGTGGCCTG 59.400 55.000 3.32 0.00 0.00 4.85
3613 5823 4.021925 GGGGCTCCAGTCGCAAGT 62.022 66.667 0.00 0.00 39.48 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.