Multiple sequence alignment - TraesCS7A01G158100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G158100 chr7A 100.000 6466 0 0 1 6466 112939195 112932730 0.000000e+00 11941
1 TraesCS7A01G158100 chr7A 96.120 1959 75 1 135 2093 26784552 26782595 0.000000e+00 3195
2 TraesCS7A01G158100 chr7A 94.778 1264 53 9 5207 6466 26782279 26781025 0.000000e+00 1956
3 TraesCS7A01G158100 chr7A 96.825 252 7 1 4805 5055 26782597 26782346 2.790000e-113 420
4 TraesCS7A01G158100 chr6A 95.959 4924 189 7 135 5055 535151080 535146164 0.000000e+00 7982
5 TraesCS7A01G158100 chr6A 94.778 1264 53 9 5207 6466 535146097 535144843 0.000000e+00 1956
6 TraesCS7A01G158100 chr6A 87.478 559 37 17 3347 3876 74244596 74244042 1.190000e-171 614
7 TraesCS7A01G158100 chr6A 87.478 559 37 17 3347 3876 498536821 498537375 1.190000e-171 614
8 TraesCS7A01G158100 chr3B 93.407 5036 298 19 1 5011 493199903 493204929 0.000000e+00 7430
9 TraesCS7A01G158100 chr3B 93.516 1280 74 7 5188 6466 493204948 493206219 0.000000e+00 1895
10 TraesCS7A01G158100 chr4D 94.496 3652 149 30 2850 6466 489790734 489787100 0.000000e+00 5583
11 TraesCS7A01G158100 chr4D 96.778 1645 52 1 1203 2846 489793796 489792152 0.000000e+00 2743
12 TraesCS7A01G158100 chr4B 96.762 2409 57 8 4073 6466 662391994 662394396 0.000000e+00 3997
13 TraesCS7A01G158100 chr4B 97.344 1732 45 1 129 1860 662390266 662391996 0.000000e+00 2942
14 TraesCS7A01G158100 chrUn 96.556 2410 56 9 4073 6466 77278504 77276106 0.000000e+00 3965
15 TraesCS7A01G158100 chrUn 97.513 1729 41 2 135 1863 77280225 77278499 0.000000e+00 2953
16 TraesCS7A01G158100 chrUn 90.287 2090 174 18 5 2080 49645043 49647117 0.000000e+00 2708
17 TraesCS7A01G158100 chr1B 93.978 2192 125 6 2826 5014 639562416 639564603 0.000000e+00 3310
18 TraesCS7A01G158100 chr1B 92.702 1247 60 17 5225 6466 639564688 639565908 0.000000e+00 1770
19 TraesCS7A01G158100 chr5A 96.302 1974 72 1 1 1974 632599083 632601055 0.000000e+00 3240
20 TraesCS7A01G158100 chr5A 97.007 568 14 2 1967 2534 632601245 632601809 0.000000e+00 952
21 TraesCS7A01G158100 chr3D 94.825 1971 96 3 2652 4620 535432550 535434516 0.000000e+00 3070
22 TraesCS7A01G158100 chr3D 93.365 1884 83 17 4616 6466 535443178 535445052 0.000000e+00 2748
23 TraesCS7A01G158100 chr7B 93.653 1938 112 7 1 1938 57812831 57814757 0.000000e+00 2887
24 TraesCS7A01G158100 chr7B 91.426 1213 81 9 3810 5011 57838374 57839574 0.000000e+00 1642
25 TraesCS7A01G158100 chr7B 93.376 1087 62 7 5188 6272 57839593 57840671 0.000000e+00 1600
26 TraesCS7A01G158100 chr7B 94.161 959 55 1 2536 3493 57837375 57838333 0.000000e+00 1459
27 TraesCS7A01G158100 chr7B 96.907 291 8 1 1938 2228 57837086 57837375 2.710000e-133 486
28 TraesCS7A01G158100 chr7B 92.275 233 16 2 1 233 664781127 664780897 4.830000e-86 329
29 TraesCS7A01G158100 chr5B 95.231 1300 61 1 1 1300 596893966 596892668 0.000000e+00 2056
30 TraesCS7A01G158100 chr6B 87.478 559 37 17 3347 3876 13855158 13855712 1.190000e-171 614
31 TraesCS7A01G158100 chr4A 92.562 363 23 4 6100 6461 661670267 661670626 9.610000e-143 518
32 TraesCS7A01G158100 chr4A 88.360 378 37 3 3622 3992 721405212 721405589 1.280000e-121 448
33 TraesCS7A01G158100 chr7D 86.486 444 50 6 3602 4036 14872988 14872546 4.540000e-131 479


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G158100 chr7A 112932730 112939195 6465 True 11941.00 11941 100.000000 1 6466 1 chr7A.!!$R1 6465
1 TraesCS7A01G158100 chr7A 26781025 26784552 3527 True 1857.00 3195 95.907667 135 6466 3 chr7A.!!$R2 6331
2 TraesCS7A01G158100 chr6A 535144843 535151080 6237 True 4969.00 7982 95.368500 135 6466 2 chr6A.!!$R2 6331
3 TraesCS7A01G158100 chr6A 74244042 74244596 554 True 614.00 614 87.478000 3347 3876 1 chr6A.!!$R1 529
4 TraesCS7A01G158100 chr6A 498536821 498537375 554 False 614.00 614 87.478000 3347 3876 1 chr6A.!!$F1 529
5 TraesCS7A01G158100 chr3B 493199903 493206219 6316 False 4662.50 7430 93.461500 1 6466 2 chr3B.!!$F1 6465
6 TraesCS7A01G158100 chr4D 489787100 489793796 6696 True 4163.00 5583 95.637000 1203 6466 2 chr4D.!!$R1 5263
7 TraesCS7A01G158100 chr4B 662390266 662394396 4130 False 3469.50 3997 97.053000 129 6466 2 chr4B.!!$F1 6337
8 TraesCS7A01G158100 chrUn 77276106 77280225 4119 True 3459.00 3965 97.034500 135 6466 2 chrUn.!!$R1 6331
9 TraesCS7A01G158100 chrUn 49645043 49647117 2074 False 2708.00 2708 90.287000 5 2080 1 chrUn.!!$F1 2075
10 TraesCS7A01G158100 chr1B 639562416 639565908 3492 False 2540.00 3310 93.340000 2826 6466 2 chr1B.!!$F1 3640
11 TraesCS7A01G158100 chr5A 632599083 632601809 2726 False 2096.00 3240 96.654500 1 2534 2 chr5A.!!$F1 2533
12 TraesCS7A01G158100 chr3D 535432550 535434516 1966 False 3070.00 3070 94.825000 2652 4620 1 chr3D.!!$F1 1968
13 TraesCS7A01G158100 chr3D 535443178 535445052 1874 False 2748.00 2748 93.365000 4616 6466 1 chr3D.!!$F2 1850
14 TraesCS7A01G158100 chr7B 57812831 57814757 1926 False 2887.00 2887 93.653000 1 1938 1 chr7B.!!$F1 1937
15 TraesCS7A01G158100 chr7B 57837086 57840671 3585 False 1296.75 1642 93.967500 1938 6272 4 chr7B.!!$F2 4334
16 TraesCS7A01G158100 chr5B 596892668 596893966 1298 True 2056.00 2056 95.231000 1 1300 1 chr5B.!!$R1 1299
17 TraesCS7A01G158100 chr6B 13855158 13855712 554 False 614.00 614 87.478000 3347 3876 1 chr6B.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 602 1.005394 ACGCCAAGAGTTGTACCCG 60.005 57.895 0.0 0.0 0.0 5.28 F
1634 1650 1.133025 CGTTCCCCTTTCATCACATGC 59.867 52.381 0.0 0.0 0.0 4.06 F
2443 2656 1.039856 TGAGAGGTTTTTGGGCAAGC 58.960 50.000 0.0 0.0 0.0 4.01 F
4069 5729 1.415659 CGGAAGATGGAGAAGATGGCT 59.584 52.381 0.0 0.0 0.0 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2152 2365 1.065126 GGCTAAGGGCAACAGATCACT 60.065 52.381 0.00 0.0 44.01 3.41 R
2585 2798 1.134220 TCGAGTCATTGGGGCCAATAC 60.134 52.381 4.39 0.0 43.92 1.89 R
4295 5955 0.396435 TCTTTCCAGAAGCGCCTCAA 59.604 50.000 9.03 0.0 0.00 3.02 R
5606 7337 0.670162 GCTTCAACTTGAGCAAGGCA 59.330 50.000 14.14 0.0 42.53 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
547 555 5.219343 AGATGATTTGGACGATGATGCTA 57.781 39.130 0.00 0.00 0.00 3.49
594 602 1.005394 ACGCCAAGAGTTGTACCCG 60.005 57.895 0.00 0.00 0.00 5.28
771 782 4.301628 CCAAAAAGTTTGTGAGAGCCATC 58.698 43.478 7.39 0.00 0.00 3.51
976 990 4.164221 AGAAGAGACTCCAAAGGTTGTTCA 59.836 41.667 0.00 0.00 0.00 3.18
991 1005 4.569564 GGTTGTTCACTTCTACAAAGACGT 59.430 41.667 0.00 0.00 36.15 4.34
1332 1348 5.046448 GCTGACCATAGATGATCTTCTGGAT 60.046 44.000 22.85 11.87 34.25 3.41
1384 1400 6.321435 TGATGCCTCTCGATCTAAGAAGTTTA 59.679 38.462 0.00 0.00 0.00 2.01
1439 1455 2.592861 GCCTGGGCGTGGATCATC 60.593 66.667 0.00 0.00 0.00 2.92
1634 1650 1.133025 CGTTCCCCTTTCATCACATGC 59.867 52.381 0.00 0.00 0.00 4.06
1635 1651 2.450476 GTTCCCCTTTCATCACATGCT 58.550 47.619 0.00 0.00 0.00 3.79
1733 1749 8.690884 CCGTAATCAGGTAGATGAGAATGATAT 58.309 37.037 0.00 0.00 36.96 1.63
1743 1759 6.226052 AGATGAGAATGATATAAGCGTGCAA 58.774 36.000 0.00 0.00 0.00 4.08
2152 2365 8.819845 AGAGCCATGACTGTCATATTATAATGA 58.180 33.333 21.88 0.00 34.28 2.57
2396 2609 1.899814 TGAAGTACGGATTGCTGGACT 59.100 47.619 0.00 0.00 46.84 3.85
2443 2656 1.039856 TGAGAGGTTTTTGGGCAAGC 58.960 50.000 0.00 0.00 0.00 4.01
2445 2658 2.158534 TGAGAGGTTTTTGGGCAAGCTA 60.159 45.455 0.00 0.00 32.09 3.32
2507 2720 3.303351 AGCAGAGGGATATGTTTTGGG 57.697 47.619 0.00 0.00 0.00 4.12
2530 2743 6.374333 GGGTGATACTCTTACATTTTGCTCAA 59.626 38.462 0.00 0.00 0.00 3.02
2585 2798 6.092670 ACTCAAACAGGACGACATAATGATTG 59.907 38.462 0.00 0.00 0.00 2.67
2617 2830 4.023279 CCAATGACTCGACAAACCATCAAA 60.023 41.667 0.00 0.00 0.00 2.69
2684 2897 6.179504 TGAAGAACTAGACTACACGTCATC 57.820 41.667 0.00 0.00 45.32 2.92
2790 3003 6.119536 CACTCTCCATACTCTCTGAACTAGT 58.880 44.000 0.00 0.00 0.00 2.57
2809 3022 6.123651 ACTAGTAGTAACCCTCTCTCATGTG 58.876 44.000 0.00 0.00 0.00 3.21
2848 4475 5.139435 TGATATTCTATCAGCGGGTCAAG 57.861 43.478 0.00 0.00 0.00 3.02
2856 4483 1.903404 AGCGGGTCAAGGCAAAAGG 60.903 57.895 0.00 0.00 0.00 3.11
2873 4500 5.350365 GCAAAAGGATACGTGATGTAGAACA 59.650 40.000 0.00 0.00 46.39 3.18
2874 4501 6.037172 GCAAAAGGATACGTGATGTAGAACAT 59.963 38.462 0.00 0.00 41.86 2.71
2875 4502 7.401860 CAAAAGGATACGTGATGTAGAACATG 58.598 38.462 0.00 0.00 39.88 3.21
2876 4503 6.465439 AAGGATACGTGATGTAGAACATGA 57.535 37.500 0.00 0.00 39.88 3.07
2945 4573 7.068341 GCTATGATCTCACGCTAAAATTCTTG 58.932 38.462 0.00 0.00 0.00 3.02
3011 4639 7.772292 TCTCTAGGTTCAATCATTGATTTCCAG 59.228 37.037 9.19 11.16 39.84 3.86
3029 4657 5.036117 TCCAGTAATGTTAAGATCCCTGC 57.964 43.478 6.14 0.00 0.00 4.85
3084 4712 3.378427 GGATGGTGAGAAAGTACAATGCC 59.622 47.826 0.00 0.00 0.00 4.40
3280 4908 6.368516 GCTGAATTATTTAAACAAAGGCAGCA 59.631 34.615 21.71 4.33 42.29 4.41
3306 4934 6.156519 GGTTTTATTCAAGTGTGATTGGGTC 58.843 40.000 0.00 0.00 32.48 4.46
3584 5230 6.071728 AGGTGAGAGCTATTGATTGTTTTTGG 60.072 38.462 0.00 0.00 0.00 3.28
3657 5313 9.111613 TGTCTTTTCTAACCGAGTTTCAAATTA 57.888 29.630 0.00 0.00 0.00 1.40
3739 5396 2.731976 GTGTCTGACCATGAACGAAGAC 59.268 50.000 5.17 0.88 35.66 3.01
3753 5410 3.995199 ACGAAGACTGAATGAGCTGAAA 58.005 40.909 0.00 0.00 0.00 2.69
3758 5415 7.981789 ACGAAGACTGAATGAGCTGAAATATAA 59.018 33.333 0.00 0.00 0.00 0.98
3804 5463 7.626446 CACAAATGGAATGCATCAATGTTATG 58.374 34.615 0.00 0.00 0.00 1.90
3940 5599 6.071952 GGAGCTCAACATGGATAACTTTGAAA 60.072 38.462 17.19 0.00 0.00 2.69
3985 5645 9.748708 TCTTGTTTTCTTGTATTGATTTGAAGG 57.251 29.630 0.00 0.00 0.00 3.46
4050 5710 3.045601 AGTGGTGAGGAAACTGAATCG 57.954 47.619 0.00 0.00 44.43 3.34
4069 5729 1.415659 CGGAAGATGGAGAAGATGGCT 59.584 52.381 0.00 0.00 0.00 4.75
4117 5777 4.399618 CGGAAGATGAAGAAGGTGAGTCTA 59.600 45.833 0.00 0.00 0.00 2.59
4295 5955 4.786454 AGACTAGAAGAGGACCTACTCACT 59.214 45.833 0.00 0.93 39.97 3.41
4360 6020 6.849588 AATTTGAAGTTCAACAGATTTGGC 57.150 33.333 17.85 0.00 35.89 4.52
4378 6038 0.609662 GCCAGCCATGTGGTTTGAAT 59.390 50.000 4.42 0.00 40.09 2.57
4391 6051 3.636300 TGGTTTGAATACTTGCAAGCTGT 59.364 39.130 26.27 11.12 0.00 4.40
4468 6128 3.632145 ACTGGAGCAAAGTACCAAAGTTG 59.368 43.478 0.00 0.00 33.14 3.16
5133 6814 3.028130 TCCGCCTCTCATATGTACACAA 58.972 45.455 0.00 0.00 0.00 3.33
5251 6978 3.132056 TCAGGAGATGGTAGAGGGTAGT 58.868 50.000 0.00 0.00 0.00 2.73
5323 7050 4.399303 GGATATCCAGTCAACCAACAAAGG 59.601 45.833 17.34 0.00 35.64 3.11
5425 7154 6.421801 GCTGTGTTCAGTGCTTCATAAAATTT 59.578 34.615 0.00 0.00 43.05 1.82
5436 7165 8.392612 GTGCTTCATAAAATTTATGCTTGCAAT 58.607 29.630 25.21 0.00 31.71 3.56
5603 7334 0.322277 AGTAGGTGGAGTCGCTTCGA 60.322 55.000 0.00 0.00 0.00 3.71
5606 7337 1.179814 AGGTGGAGTCGCTTCGAAGT 61.180 55.000 25.24 6.37 37.72 3.01
5923 7654 6.636454 TTCCACATACTAGGACTTGGAAAT 57.364 37.500 14.40 0.00 39.59 2.17
5926 7657 6.051717 CCACATACTAGGACTTGGAAATCAG 58.948 44.000 0.00 0.00 0.00 2.90
5989 7720 1.153107 CATCCGAGGCAATGGCTGA 60.153 57.895 15.83 6.68 38.98 4.26
6449 8196 5.596845 GTGCACAAGGGAAAATAAACAAGA 58.403 37.500 13.17 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.091541 GCGGAATCAAAGGGATGTTCA 58.908 47.619 0.00 0.00 36.02 3.18
234 242 3.865011 TTTGCTGACTCACAAAAAGCA 57.135 38.095 0.00 0.00 41.87 3.91
594 602 3.826466 CTTCGAGAATCTTTTGCAACCC 58.174 45.455 0.00 0.00 0.00 4.11
771 782 9.847706 GCATCTATACTATCATATCCAATACCG 57.152 37.037 0.00 0.00 0.00 4.02
976 990 5.707242 TCTGATGACGTCTTTGTAGAAGT 57.293 39.130 17.92 0.00 44.27 3.01
991 1005 3.040477 TGTGCCACCTCATATCTGATGA 58.960 45.455 0.00 0.00 0.00 2.92
1021 1035 0.537143 ATCAAGCCGTCCTTTGTGCA 60.537 50.000 0.00 0.00 0.00 4.57
1332 1348 3.845992 TCCAGACTCCATCATTCCAAAGA 59.154 43.478 0.00 0.00 0.00 2.52
1439 1455 7.707035 AGCAAACTACTATATTTTCTCCAGACG 59.293 37.037 0.00 0.00 0.00 4.18
1512 1528 5.626809 GCGATGTCCCATATAGCATTTCCTA 60.627 44.000 0.00 0.00 0.00 2.94
1514 1530 3.375299 GCGATGTCCCATATAGCATTTCC 59.625 47.826 0.00 0.00 0.00 3.13
1733 1749 1.948104 AGTGTCTTGTTGCACGCTTA 58.052 45.000 0.00 0.00 40.26 3.09
1743 1759 8.908786 TCTTTCTGAATATTGAAGTGTCTTGT 57.091 30.769 0.00 0.00 0.00 3.16
2152 2365 1.065126 GGCTAAGGGCAACAGATCACT 60.065 52.381 0.00 0.00 44.01 3.41
2258 2471 6.533730 TCCAACTTTTGTATCTCACTCACAT 58.466 36.000 0.00 0.00 0.00 3.21
2443 2656 8.516234 ACTTAGCGTATGGATCATACTCTTTAG 58.484 37.037 13.46 13.04 38.66 1.85
2445 2658 7.014326 TGACTTAGCGTATGGATCATACTCTTT 59.986 37.037 13.46 2.69 38.66 2.52
2507 2720 8.256611 TCTTGAGCAAAATGTAAGAGTATCAC 57.743 34.615 0.00 0.00 37.82 3.06
2530 2743 5.329035 GTTGGACAACCATGCAAATATCT 57.671 39.130 3.85 0.00 46.34 1.98
2585 2798 1.134220 TCGAGTCATTGGGGCCAATAC 60.134 52.381 4.39 0.00 43.92 1.89
2617 2830 4.639310 ACGACCGACTATTCTCAAGTATGT 59.361 41.667 0.00 0.00 0.00 2.29
2684 2897 4.813161 ACACATATCTTTGAGCTTGGATCG 59.187 41.667 0.00 0.00 0.00 3.69
2790 3003 3.708451 TGCACATGAGAGAGGGTTACTA 58.292 45.455 0.00 0.00 0.00 1.82
2848 4475 4.439057 TCTACATCACGTATCCTTTTGCC 58.561 43.478 0.00 0.00 0.00 4.52
2856 4483 5.588240 TGGTCATGTTCTACATCACGTATC 58.412 41.667 0.00 0.00 36.53 2.24
2873 4500 5.415701 GTGTGGAAACTATTGTGATGGTCAT 59.584 40.000 0.00 0.00 0.00 3.06
2874 4501 4.759693 GTGTGGAAACTATTGTGATGGTCA 59.240 41.667 0.00 0.00 0.00 4.02
2875 4502 5.003804 AGTGTGGAAACTATTGTGATGGTC 58.996 41.667 0.00 0.00 0.00 4.02
2876 4503 4.985538 AGTGTGGAAACTATTGTGATGGT 58.014 39.130 0.00 0.00 0.00 3.55
2945 4573 5.674008 CAATATCACTACATGAAGCGCTTC 58.326 41.667 37.21 37.21 41.93 3.86
2959 4587 9.565090 ACATAACATAGTCAATGCAATATCACT 57.435 29.630 0.00 0.00 39.39 3.41
2961 4589 9.783081 AGACATAACATAGTCAATGCAATATCA 57.217 29.630 0.00 0.00 39.39 2.15
3011 4639 6.116126 ACTTCTGCAGGGATCTTAACATTAC 58.884 40.000 15.13 0.00 0.00 1.89
3029 4657 7.377131 GCTTTTGTGCTAAGACTTTAACTTCTG 59.623 37.037 0.00 0.00 0.00 3.02
3084 4712 7.933577 TGGAAAGTGCATCCATTTATAGAGTAG 59.066 37.037 3.30 0.00 41.98 2.57
3266 4894 4.414337 AAAACCATGCTGCCTTTGTTTA 57.586 36.364 0.00 0.00 0.00 2.01
3280 4908 6.269769 ACCCAATCACACTTGAATAAAACCAT 59.730 34.615 0.00 0.00 34.61 3.55
3584 5230 7.855904 ACAATCAACGACACTTGAAATTTAGTC 59.144 33.333 0.00 0.00 33.85 2.59
3657 5313 6.787170 AGTCATCATATTTCCTGGCATGTAT 58.213 36.000 0.00 0.00 0.00 2.29
3739 5396 9.322773 TCTGACTTTATATTTCAGCTCATTCAG 57.677 33.333 0.00 0.00 37.31 3.02
3758 5415 7.540474 TGTGGTAGATTAACTTCTCTGACTT 57.460 36.000 0.00 0.00 0.00 3.01
3804 5463 7.524294 TGAAGCTTCTGTTTTCATTTGTTTC 57.476 32.000 26.09 0.00 0.00 2.78
3813 5472 4.097892 TCCCTGTTTGAAGCTTCTGTTTTC 59.902 41.667 26.09 11.50 0.00 2.29
3985 5645 4.768583 ACATCTTCTTCAGCTCTGGAATC 58.231 43.478 0.00 0.00 0.00 2.52
4050 5710 2.705127 AGAGCCATCTTCTCCATCTTCC 59.295 50.000 0.00 0.00 28.57 3.46
4069 5729 4.971939 TCAGTTTCATCACCATGTTCAGA 58.028 39.130 0.00 0.00 0.00 3.27
4117 5777 7.448420 TCTTCTTCATGTTCATCTTCTTGTCT 58.552 34.615 0.00 0.00 0.00 3.41
4164 5824 4.516698 CAGAACTAACCATGTGTTTGCTCT 59.483 41.667 5.12 6.71 36.15 4.09
4295 5955 0.396435 TCTTTCCAGAAGCGCCTCAA 59.604 50.000 9.03 0.00 0.00 3.02
4336 5996 6.928492 GGCCAAATCTGTTGAACTTCAAATTA 59.072 34.615 5.76 0.00 38.22 1.40
4360 6020 3.091545 AGTATTCAAACCACATGGCTGG 58.908 45.455 0.00 0.00 39.32 4.85
4378 6038 7.384660 CCAATAAAATTTGACAGCTTGCAAGTA 59.615 33.333 26.55 7.77 0.00 2.24
4391 6051 8.713708 TTCACTAGGGTTCCAATAAAATTTGA 57.286 30.769 0.00 0.00 0.00 2.69
4468 6128 3.296854 ACCCCACAACTTTTCTTTCTCC 58.703 45.455 0.00 0.00 0.00 3.71
4936 6617 0.670546 CGTTGCATCCCTCGAGTTGT 60.671 55.000 12.31 0.00 0.00 3.32
5114 6795 3.798878 CAGTTGTGTACATATGAGAGGCG 59.201 47.826 10.38 0.00 0.00 5.52
5133 6814 4.022589 CAGCAAATCTGTCCACAATTCAGT 60.023 41.667 0.00 0.00 38.02 3.41
5323 7050 6.314400 TGAACTACATACCATTTTTACTCCGC 59.686 38.462 0.00 0.00 0.00 5.54
5425 7154 8.374743 TCATATAACAGTAGGATTGCAAGCATA 58.625 33.333 17.68 11.43 0.00 3.14
5606 7337 0.670162 GCTTCAACTTGAGCAAGGCA 59.330 50.000 14.14 0.00 42.53 4.75
5890 7621 9.656323 AGTCCTAGTATGTGGAAACTCATATTA 57.344 33.333 0.00 0.00 45.46 0.98
5923 7654 3.067106 GCTTGTTCTTCGTCATTCCTGA 58.933 45.455 0.00 0.00 0.00 3.86
5926 7657 3.251004 AGTTGCTTGTTCTTCGTCATTCC 59.749 43.478 0.00 0.00 0.00 3.01
5989 7720 1.849039 AGAGTAGCCATTGCCTTGGAT 59.151 47.619 6.22 2.24 39.25 3.41
6217 7963 5.128171 TCCGTCCTGTAAGTTGCAATAGTAT 59.872 40.000 0.59 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.