Multiple sequence alignment - TraesCS7A01G157000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G157000 chr7A 100.000 4611 0 0 1 4611 109839874 109844484 0.000000e+00 8516.0
1 TraesCS7A01G157000 chr7D 91.779 4087 207 45 573 4611 105247545 105251550 0.000000e+00 5566.0
2 TraesCS7A01G157000 chr7D 80.568 916 127 22 2818 3709 105288004 105288892 0.000000e+00 658.0
3 TraesCS7A01G157000 chr7D 96.226 53 1 1 107 159 105226435 105226486 8.220000e-13 86.1
4 TraesCS7A01G157000 chr7B 92.609 3450 175 30 573 3999 63855157 63858549 0.000000e+00 4885.0
5 TraesCS7A01G157000 chr7B 90.637 534 22 7 4095 4611 63858564 63859086 0.000000e+00 684.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G157000 chr7A 109839874 109844484 4610 False 8516.0 8516 100.000 1 4611 1 chr7A.!!$F1 4610
1 TraesCS7A01G157000 chr7D 105247545 105251550 4005 False 5566.0 5566 91.779 573 4611 1 chr7D.!!$F2 4038
2 TraesCS7A01G157000 chr7D 105288004 105288892 888 False 658.0 658 80.568 2818 3709 1 chr7D.!!$F3 891
3 TraesCS7A01G157000 chr7B 63855157 63859086 3929 False 2784.5 4885 91.623 573 4611 2 chr7B.!!$F1 4038

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.033011 AGCCGATCTCCCCGCTATAT 60.033 55.000 0.00 0.0 0.00 0.86 F
326 327 0.034059 CCATAGGTCGCCAGATCACC 59.966 60.000 0.00 0.0 0.00 4.02 F
369 370 0.037975 CAATTTGCCAGACCACTGCC 60.038 55.000 0.00 0.0 42.25 4.85 F
420 421 0.099968 CCGTCGCCAGATCTCGTTTA 59.900 55.000 0.00 0.0 0.00 2.01 F
1234 1247 0.318762 GTGGTGGAGACTGACTGACC 59.681 60.000 0.00 0.0 0.00 4.02 F
1847 1869 0.832135 TTCAGCTGTCGGAGGAGGTT 60.832 55.000 14.67 0.0 0.00 3.50 F
1919 1941 1.742268 GATTTTCCTGAGCAGCCTGTC 59.258 52.381 0.00 0.0 0.00 3.51 F
3269 3305 2.235898 ACCTGAGAGCTGACATTCTTCC 59.764 50.000 0.00 0.0 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1847 1869 0.320683 CATCCACACTCTTCACGCCA 60.321 55.000 0.00 0.00 0.00 5.69 R
1919 1941 2.012051 GCAACCACCATCTTAGTCGGG 61.012 57.143 0.00 0.00 0.00 5.14 R
1991 2013 4.519350 CAGCCTTGCATAATCATGAGATGT 59.481 41.667 17.36 0.00 33.90 3.06 R
2046 2073 4.636206 CCATGAAACCTAGGCACTAAAGAC 59.364 45.833 9.30 0.00 42.17 3.01 R
2595 2629 0.305922 GATTTTGGAGCGCATCTCGG 59.694 55.000 11.47 0.00 42.82 4.63 R
3493 3551 0.946528 GCATGTGACTGTGAGTGCAA 59.053 50.000 0.00 0.00 33.09 4.08 R
3555 3613 1.000607 AGCGGCAGTATATACACCACG 60.001 52.381 19.40 15.73 0.00 4.94 R
4107 4187 0.179004 TGGAGCAAAAGCCCGAAAGA 60.179 50.000 0.00 0.00 0.00 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.159298 CCCCCGTGTGATCTTTGAG 57.841 57.895 0.00 0.00 0.00 3.02
20 21 0.324943 CCCCCGTGTGATCTTTGAGT 59.675 55.000 0.00 0.00 0.00 3.41
21 22 1.676014 CCCCCGTGTGATCTTTGAGTC 60.676 57.143 0.00 0.00 0.00 3.36
22 23 1.350193 CCCGTGTGATCTTTGAGTCG 58.650 55.000 0.00 0.00 0.00 4.18
23 24 1.336887 CCCGTGTGATCTTTGAGTCGT 60.337 52.381 0.00 0.00 0.00 4.34
24 25 1.721389 CCGTGTGATCTTTGAGTCGTG 59.279 52.381 0.00 0.00 0.00 4.35
25 26 1.125021 CGTGTGATCTTTGAGTCGTGC 59.875 52.381 0.00 0.00 0.00 5.34
26 27 2.135139 GTGTGATCTTTGAGTCGTGCA 58.865 47.619 0.00 0.00 0.00 4.57
27 28 2.156504 GTGTGATCTTTGAGTCGTGCAG 59.843 50.000 0.00 0.00 0.00 4.41
28 29 2.035832 TGTGATCTTTGAGTCGTGCAGA 59.964 45.455 0.00 0.00 0.00 4.26
29 30 3.059884 GTGATCTTTGAGTCGTGCAGAA 58.940 45.455 0.00 0.00 0.00 3.02
30 31 3.681897 GTGATCTTTGAGTCGTGCAGAAT 59.318 43.478 0.00 0.00 0.00 2.40
31 32 4.153117 GTGATCTTTGAGTCGTGCAGAATT 59.847 41.667 0.00 0.00 0.00 2.17
32 33 4.152938 TGATCTTTGAGTCGTGCAGAATTG 59.847 41.667 0.00 0.00 0.00 2.32
44 45 0.458669 CAGAATTGCACCCATGAGCC 59.541 55.000 0.00 0.00 0.00 4.70
45 46 0.333993 AGAATTGCACCCATGAGCCT 59.666 50.000 0.00 0.00 0.00 4.58
46 47 0.743097 GAATTGCACCCATGAGCCTC 59.257 55.000 0.00 0.00 0.00 4.70
47 48 0.333993 AATTGCACCCATGAGCCTCT 59.666 50.000 0.00 0.00 0.00 3.69
48 49 0.106819 ATTGCACCCATGAGCCTCTC 60.107 55.000 0.00 0.00 0.00 3.20
49 50 1.203441 TTGCACCCATGAGCCTCTCT 61.203 55.000 0.00 0.00 0.00 3.10
50 51 0.325577 TGCACCCATGAGCCTCTCTA 60.326 55.000 0.00 0.00 0.00 2.43
51 52 0.105778 GCACCCATGAGCCTCTCTAC 59.894 60.000 0.00 0.00 0.00 2.59
52 53 1.786937 CACCCATGAGCCTCTCTACT 58.213 55.000 0.00 0.00 0.00 2.57
53 54 1.686052 CACCCATGAGCCTCTCTACTC 59.314 57.143 0.00 0.00 0.00 2.59
54 55 1.289231 ACCCATGAGCCTCTCTACTCA 59.711 52.381 0.00 0.00 46.34 3.41
59 60 3.941704 TGAGCCTCTCTACTCATCAGA 57.058 47.619 0.00 0.00 37.99 3.27
61 62 2.554032 GAGCCTCTCTACTCATCAGAGC 59.446 54.545 0.00 0.00 46.09 4.09
62 63 2.091939 AGCCTCTCTACTCATCAGAGCA 60.092 50.000 0.00 0.00 46.09 4.26
63 64 2.892852 GCCTCTCTACTCATCAGAGCAT 59.107 50.000 0.00 0.00 46.09 3.79
64 65 3.057315 GCCTCTCTACTCATCAGAGCATC 60.057 52.174 0.00 0.00 46.09 3.91
77 78 1.387539 GAGCATCTCCAAAAGCCTCC 58.612 55.000 0.00 0.00 0.00 4.30
78 79 0.393537 AGCATCTCCAAAAGCCTCCG 60.394 55.000 0.00 0.00 0.00 4.63
79 80 1.379642 GCATCTCCAAAAGCCTCCGG 61.380 60.000 0.00 0.00 0.00 5.14
80 81 0.035056 CATCTCCAAAAGCCTCCGGT 60.035 55.000 0.00 0.00 0.00 5.28
81 82 0.698818 ATCTCCAAAAGCCTCCGGTT 59.301 50.000 0.00 0.00 0.00 4.44
82 83 0.476771 TCTCCAAAAGCCTCCGGTTT 59.523 50.000 0.00 0.00 41.38 3.27
84 85 1.686587 CTCCAAAAGCCTCCGGTTTTT 59.313 47.619 0.00 2.26 45.08 1.94
85 86 1.684450 TCCAAAAGCCTCCGGTTTTTC 59.316 47.619 0.00 0.00 45.08 2.29
86 87 1.270094 CCAAAAGCCTCCGGTTTTTCC 60.270 52.381 0.00 0.00 45.08 3.13
87 88 1.410882 CAAAAGCCTCCGGTTTTTCCA 59.589 47.619 0.00 0.00 45.08 3.53
88 89 1.328279 AAAGCCTCCGGTTTTTCCAG 58.672 50.000 0.00 0.00 36.27 3.86
89 90 0.185175 AAGCCTCCGGTTTTTCCAGT 59.815 50.000 0.00 0.00 35.57 4.00
90 91 0.537371 AGCCTCCGGTTTTTCCAGTG 60.537 55.000 0.00 0.00 35.57 3.66
91 92 0.536460 GCCTCCGGTTTTTCCAGTGA 60.536 55.000 0.00 0.00 35.57 3.41
92 93 1.886655 GCCTCCGGTTTTTCCAGTGAT 60.887 52.381 0.00 0.00 35.57 3.06
93 94 2.514803 CCTCCGGTTTTTCCAGTGATT 58.485 47.619 0.00 0.00 35.57 2.57
94 95 2.890945 CCTCCGGTTTTTCCAGTGATTT 59.109 45.455 0.00 0.00 35.57 2.17
95 96 3.320826 CCTCCGGTTTTTCCAGTGATTTT 59.679 43.478 0.00 0.00 35.57 1.82
96 97 4.202212 CCTCCGGTTTTTCCAGTGATTTTT 60.202 41.667 0.00 0.00 35.57 1.94
118 119 8.753497 TTTTTGGTATTGGCAATAAACCTTTT 57.247 26.923 25.10 2.20 0.00 2.27
119 120 7.971183 TTTGGTATTGGCAATAAACCTTTTC 57.029 32.000 25.10 11.15 0.00 2.29
120 121 5.715070 TGGTATTGGCAATAAACCTTTTCG 58.285 37.500 25.10 0.00 0.00 3.46
121 122 5.244178 TGGTATTGGCAATAAACCTTTTCGT 59.756 36.000 25.10 0.88 0.00 3.85
122 123 6.433404 TGGTATTGGCAATAAACCTTTTCGTA 59.567 34.615 25.10 7.54 0.00 3.43
123 124 7.122948 TGGTATTGGCAATAAACCTTTTCGTAT 59.877 33.333 25.10 0.00 0.00 3.06
124 125 7.977293 GGTATTGGCAATAAACCTTTTCGTATT 59.023 33.333 20.81 0.00 0.00 1.89
125 126 7.826260 ATTGGCAATAAACCTTTTCGTATTG 57.174 32.000 11.81 0.00 37.13 1.90
126 127 6.576662 TGGCAATAAACCTTTTCGTATTGA 57.423 33.333 6.47 0.00 36.48 2.57
127 128 6.982852 TGGCAATAAACCTTTTCGTATTGAA 58.017 32.000 6.47 0.00 36.48 2.69
128 129 7.434492 TGGCAATAAACCTTTTCGTATTGAAA 58.566 30.769 6.47 0.00 44.70 2.69
129 130 7.596995 TGGCAATAAACCTTTTCGTATTGAAAG 59.403 33.333 6.47 0.00 46.72 2.62
130 131 7.810759 GGCAATAAACCTTTTCGTATTGAAAGA 59.189 33.333 6.47 0.00 46.72 2.52
131 132 8.850452 GCAATAAACCTTTTCGTATTGAAAGAG 58.150 33.333 6.47 0.00 46.72 2.85
132 133 9.893305 CAATAAACCTTTTCGTATTGAAAGAGT 57.107 29.630 0.00 0.00 46.72 3.24
134 135 9.893305 ATAAACCTTTTCGTATTGAAAGAGTTG 57.107 29.630 7.44 0.00 46.72 3.16
135 136 7.562454 AACCTTTTCGTATTGAAAGAGTTGA 57.438 32.000 0.00 0.00 46.72 3.18
136 137 7.190920 ACCTTTTCGTATTGAAAGAGTTGAG 57.809 36.000 0.00 0.00 46.72 3.02
137 138 6.080406 CCTTTTCGTATTGAAAGAGTTGAGC 58.920 40.000 0.00 0.00 46.72 4.26
138 139 5.607119 TTTCGTATTGAAAGAGTTGAGCC 57.393 39.130 0.00 0.00 41.59 4.70
139 140 4.265904 TCGTATTGAAAGAGTTGAGCCA 57.734 40.909 0.00 0.00 0.00 4.75
140 141 4.637276 TCGTATTGAAAGAGTTGAGCCAA 58.363 39.130 0.00 0.00 0.00 4.52
141 142 5.060506 TCGTATTGAAAGAGTTGAGCCAAA 58.939 37.500 0.00 0.00 0.00 3.28
142 143 5.529430 TCGTATTGAAAGAGTTGAGCCAAAA 59.471 36.000 0.00 0.00 0.00 2.44
143 144 6.038825 TCGTATTGAAAGAGTTGAGCCAAAAA 59.961 34.615 0.00 0.00 0.00 1.94
166 167 8.848474 AAAACATGCTTCAATGTAGTAGTACT 57.152 30.769 8.14 8.14 39.89 2.73
167 168 8.480643 AAACATGCTTCAATGTAGTAGTACTC 57.519 34.615 5.96 0.00 39.89 2.59
168 169 7.170393 ACATGCTTCAATGTAGTAGTACTCA 57.830 36.000 5.96 5.57 39.01 3.41
169 170 7.261325 ACATGCTTCAATGTAGTAGTACTCAG 58.739 38.462 5.96 0.00 39.01 3.35
170 171 5.651530 TGCTTCAATGTAGTAGTACTCAGC 58.348 41.667 5.96 8.94 0.00 4.26
171 172 5.044558 GCTTCAATGTAGTAGTACTCAGCC 58.955 45.833 5.96 0.00 0.00 4.85
172 173 4.895224 TCAATGTAGTAGTACTCAGCCG 57.105 45.455 5.96 0.00 0.00 5.52
173 174 4.520179 TCAATGTAGTAGTACTCAGCCGA 58.480 43.478 5.96 0.00 0.00 5.54
174 175 5.131067 TCAATGTAGTAGTACTCAGCCGAT 58.869 41.667 5.96 0.00 0.00 4.18
175 176 5.238868 TCAATGTAGTAGTACTCAGCCGATC 59.761 44.000 5.96 0.00 0.00 3.69
176 177 4.418973 TGTAGTAGTACTCAGCCGATCT 57.581 45.455 5.96 0.00 0.00 2.75
177 178 4.378774 TGTAGTAGTACTCAGCCGATCTC 58.621 47.826 5.96 0.00 0.00 2.75
178 179 2.853705 AGTAGTACTCAGCCGATCTCC 58.146 52.381 0.00 0.00 0.00 3.71
179 180 1.881324 GTAGTACTCAGCCGATCTCCC 59.119 57.143 0.00 0.00 0.00 4.30
180 181 0.468400 AGTACTCAGCCGATCTCCCC 60.468 60.000 0.00 0.00 0.00 4.81
181 182 1.528542 TACTCAGCCGATCTCCCCG 60.529 63.158 0.00 0.00 0.00 5.73
182 183 4.292178 CTCAGCCGATCTCCCCGC 62.292 72.222 0.00 0.00 0.00 6.13
183 184 4.841617 TCAGCCGATCTCCCCGCT 62.842 66.667 0.00 0.00 0.00 5.52
184 185 2.912542 CAGCCGATCTCCCCGCTA 60.913 66.667 0.00 0.00 0.00 4.26
185 186 2.118513 AGCCGATCTCCCCGCTAT 59.881 61.111 0.00 0.00 0.00 2.97
186 187 0.965866 CAGCCGATCTCCCCGCTATA 60.966 60.000 0.00 0.00 0.00 1.31
187 188 0.033011 AGCCGATCTCCCCGCTATAT 60.033 55.000 0.00 0.00 0.00 0.86
188 189 1.214673 AGCCGATCTCCCCGCTATATA 59.785 52.381 0.00 0.00 0.00 0.86
189 190 2.158445 AGCCGATCTCCCCGCTATATAT 60.158 50.000 0.00 0.00 0.00 0.86
190 191 3.074094 AGCCGATCTCCCCGCTATATATA 59.926 47.826 0.00 0.00 0.00 0.86
191 192 4.017808 GCCGATCTCCCCGCTATATATAT 58.982 47.826 0.00 0.00 0.00 0.86
192 193 4.463186 GCCGATCTCCCCGCTATATATATT 59.537 45.833 0.00 0.00 0.00 1.28
193 194 5.622460 GCCGATCTCCCCGCTATATATATTG 60.622 48.000 0.00 0.00 0.00 1.90
194 195 5.710567 CCGATCTCCCCGCTATATATATTGA 59.289 44.000 8.17 0.00 0.00 2.57
195 196 6.208797 CCGATCTCCCCGCTATATATATTGAA 59.791 42.308 8.17 0.00 0.00 2.69
196 197 7.309177 CGATCTCCCCGCTATATATATTGAAG 58.691 42.308 8.17 0.00 0.00 3.02
197 198 7.175119 CGATCTCCCCGCTATATATATTGAAGA 59.825 40.741 8.17 3.46 0.00 2.87
198 199 8.783660 ATCTCCCCGCTATATATATTGAAGAA 57.216 34.615 8.17 0.00 0.00 2.52
199 200 8.783660 TCTCCCCGCTATATATATTGAAGAAT 57.216 34.615 8.17 0.00 0.00 2.40
200 201 9.213777 TCTCCCCGCTATATATATTGAAGAATT 57.786 33.333 8.17 0.00 0.00 2.17
201 202 9.838339 CTCCCCGCTATATATATTGAAGAATTT 57.162 33.333 8.17 0.00 0.00 1.82
202 203 9.613428 TCCCCGCTATATATATTGAAGAATTTG 57.387 33.333 8.17 0.00 0.00 2.32
203 204 8.840321 CCCCGCTATATATATTGAAGAATTTGG 58.160 37.037 8.17 0.00 0.00 3.28
204 205 8.345565 CCCGCTATATATATTGAAGAATTTGGC 58.654 37.037 8.17 0.00 0.00 4.52
205 206 8.345565 CCGCTATATATATTGAAGAATTTGGCC 58.654 37.037 8.17 0.00 0.00 5.36
206 207 9.113838 CGCTATATATATTGAAGAATTTGGCCT 57.886 33.333 3.32 0.00 0.00 5.19
211 212 8.860780 ATATATTGAAGAATTTGGCCTCTCTC 57.139 34.615 3.32 0.00 0.00 3.20
212 213 3.356529 TGAAGAATTTGGCCTCTCTCC 57.643 47.619 3.32 0.00 0.00 3.71
213 214 2.915604 TGAAGAATTTGGCCTCTCTCCT 59.084 45.455 3.32 0.00 0.00 3.69
214 215 4.104086 TGAAGAATTTGGCCTCTCTCCTA 58.896 43.478 3.32 0.00 0.00 2.94
215 216 4.536090 TGAAGAATTTGGCCTCTCTCCTAA 59.464 41.667 3.32 0.00 0.00 2.69
216 217 5.192522 TGAAGAATTTGGCCTCTCTCCTAAT 59.807 40.000 3.32 0.00 31.96 1.73
217 218 6.386927 TGAAGAATTTGGCCTCTCTCCTAATA 59.613 38.462 3.32 0.00 30.79 0.98
218 219 7.072961 TGAAGAATTTGGCCTCTCTCCTAATAT 59.927 37.037 3.32 0.00 30.79 1.28
219 220 7.399674 AGAATTTGGCCTCTCTCCTAATATT 57.600 36.000 3.32 0.00 30.79 1.28
220 221 7.820532 AGAATTTGGCCTCTCTCCTAATATTT 58.179 34.615 3.32 0.00 30.79 1.40
221 222 8.285163 AGAATTTGGCCTCTCTCCTAATATTTT 58.715 33.333 3.32 0.00 30.79 1.82
222 223 8.844865 AATTTGGCCTCTCTCCTAATATTTTT 57.155 30.769 3.32 0.00 30.79 1.94
243 244 6.525121 TTTTCTCAATAAGTGTCACGTCTG 57.475 37.500 0.00 0.00 0.00 3.51
244 245 4.848562 TCTCAATAAGTGTCACGTCTGT 57.151 40.909 0.00 0.00 0.00 3.41
246 247 4.037565 TCTCAATAAGTGTCACGTCTGTGT 59.962 41.667 0.00 0.00 46.49 3.72
247 248 5.239963 TCTCAATAAGTGTCACGTCTGTGTA 59.760 40.000 0.00 0.00 46.49 2.90
248 249 6.020971 TCAATAAGTGTCACGTCTGTGTAT 57.979 37.500 0.00 0.00 46.49 2.29
249 250 6.090783 TCAATAAGTGTCACGTCTGTGTATC 58.909 40.000 0.00 0.00 46.49 2.24
250 251 5.638596 ATAAGTGTCACGTCTGTGTATCA 57.361 39.130 0.00 0.00 46.49 2.15
251 252 3.284323 AGTGTCACGTCTGTGTATCAC 57.716 47.619 0.00 10.45 46.49 3.06
252 253 2.885266 AGTGTCACGTCTGTGTATCACT 59.115 45.455 13.16 13.16 46.49 3.41
253 254 3.058155 AGTGTCACGTCTGTGTATCACTC 60.058 47.826 13.16 1.04 46.49 3.51
254 255 2.882137 TGTCACGTCTGTGTATCACTCA 59.118 45.455 0.00 0.00 46.49 3.41
255 256 3.316868 TGTCACGTCTGTGTATCACTCAA 59.683 43.478 0.00 0.00 46.49 3.02
256 257 3.914966 GTCACGTCTGTGTATCACTCAAG 59.085 47.826 0.00 0.00 46.49 3.02
257 258 3.568430 TCACGTCTGTGTATCACTCAAGT 59.432 43.478 0.00 0.00 46.49 3.16
258 259 4.758165 TCACGTCTGTGTATCACTCAAGTA 59.242 41.667 0.00 0.00 46.49 2.24
259 260 5.089411 CACGTCTGTGTATCACTCAAGTAG 58.911 45.833 0.00 0.00 41.34 2.57
260 261 4.099120 CGTCTGTGTATCACTCAAGTAGC 58.901 47.826 1.72 0.00 35.11 3.58
261 262 4.425520 GTCTGTGTATCACTCAAGTAGCC 58.574 47.826 1.72 0.00 35.11 3.93
262 263 3.447586 TCTGTGTATCACTCAAGTAGCCC 59.552 47.826 1.72 0.00 35.11 5.19
263 264 2.165641 TGTGTATCACTCAAGTAGCCCG 59.834 50.000 1.72 0.00 35.11 6.13
264 265 1.136305 TGTATCACTCAAGTAGCCCGC 59.864 52.381 0.00 0.00 0.00 6.13
265 266 0.750850 TATCACTCAAGTAGCCCGCC 59.249 55.000 0.00 0.00 0.00 6.13
266 267 1.264749 ATCACTCAAGTAGCCCGCCA 61.265 55.000 0.00 0.00 0.00 5.69
267 268 1.448540 CACTCAAGTAGCCCGCCAG 60.449 63.158 0.00 0.00 0.00 4.85
268 269 1.609501 ACTCAAGTAGCCCGCCAGA 60.610 57.895 0.00 0.00 0.00 3.86
269 270 0.978146 ACTCAAGTAGCCCGCCAGAT 60.978 55.000 0.00 0.00 0.00 2.90
270 271 0.249657 CTCAAGTAGCCCGCCAGATC 60.250 60.000 0.00 0.00 0.00 2.75
271 272 0.975556 TCAAGTAGCCCGCCAGATCA 60.976 55.000 0.00 0.00 0.00 2.92
272 273 0.811616 CAAGTAGCCCGCCAGATCAC 60.812 60.000 0.00 0.00 0.00 3.06
273 274 1.972660 AAGTAGCCCGCCAGATCACC 61.973 60.000 0.00 0.00 0.00 4.02
274 275 3.536917 TAGCCCGCCAGATCACCG 61.537 66.667 0.00 0.00 0.00 4.94
279 280 4.758251 CGCCAGATCACCGTGCCA 62.758 66.667 0.00 0.00 0.00 4.92
280 281 2.124570 GCCAGATCACCGTGCCAT 60.125 61.111 0.00 0.00 0.00 4.40
281 282 2.182842 GCCAGATCACCGTGCCATC 61.183 63.158 0.00 0.00 0.00 3.51
282 283 1.884464 CCAGATCACCGTGCCATCG 60.884 63.158 0.00 0.00 0.00 3.84
283 284 2.202932 AGATCACCGTGCCATCGC 60.203 61.111 0.00 0.00 0.00 4.58
284 285 3.272334 GATCACCGTGCCATCGCC 61.272 66.667 0.00 0.00 0.00 5.54
285 286 4.094646 ATCACCGTGCCATCGCCA 62.095 61.111 0.00 0.00 0.00 5.69
286 287 3.405093 ATCACCGTGCCATCGCCAT 62.405 57.895 0.00 0.00 0.00 4.40
287 288 3.576356 CACCGTGCCATCGCCATC 61.576 66.667 0.00 0.00 0.00 3.51
316 317 2.106332 GACCACCGCCATAGGTCG 59.894 66.667 0.00 0.00 43.89 4.79
317 318 4.157120 ACCACCGCCATAGGTCGC 62.157 66.667 0.00 0.00 43.89 5.19
318 319 4.910585 CCACCGCCATAGGTCGCC 62.911 72.222 0.00 0.00 43.89 5.54
319 320 4.155733 CACCGCCATAGGTCGCCA 62.156 66.667 0.00 0.00 43.89 5.69
320 321 3.849951 ACCGCCATAGGTCGCCAG 61.850 66.667 0.00 0.00 41.46 4.85
321 322 3.536917 CCGCCATAGGTCGCCAGA 61.537 66.667 0.00 0.00 0.00 3.86
322 323 2.737180 CGCCATAGGTCGCCAGAT 59.263 61.111 0.00 0.00 0.00 2.90
323 324 1.373497 CGCCATAGGTCGCCAGATC 60.373 63.158 0.00 0.00 0.00 2.75
324 325 1.748403 GCCATAGGTCGCCAGATCA 59.252 57.895 0.00 0.00 0.00 2.92
325 326 0.601311 GCCATAGGTCGCCAGATCAC 60.601 60.000 0.00 0.00 0.00 3.06
326 327 0.034059 CCATAGGTCGCCAGATCACC 59.966 60.000 0.00 0.00 0.00 4.02
327 328 0.319040 CATAGGTCGCCAGATCACCG 60.319 60.000 0.00 0.00 35.13 4.94
328 329 2.088674 ATAGGTCGCCAGATCACCGC 62.089 60.000 0.00 0.00 35.13 5.68
330 331 4.796231 GTCGCCAGATCACCGCGT 62.796 66.667 17.10 0.00 45.85 6.01
331 332 4.063967 TCGCCAGATCACCGCGTT 62.064 61.111 17.10 0.00 45.85 4.84
332 333 2.202690 CGCCAGATCACCGCGTTA 60.203 61.111 4.92 0.00 40.99 3.18
333 334 2.514013 CGCCAGATCACCGCGTTAC 61.514 63.158 4.92 0.00 40.99 2.50
334 335 2.171725 GCCAGATCACCGCGTTACC 61.172 63.158 4.92 0.00 0.00 2.85
335 336 1.876714 CCAGATCACCGCGTTACCG 60.877 63.158 4.92 0.00 37.07 4.02
345 346 3.332366 CGTTACCGCCAAACCGTT 58.668 55.556 0.00 0.00 0.00 4.44
346 347 1.082627 CGTTACCGCCAAACCGTTG 60.083 57.895 0.00 0.00 34.25 4.10
347 348 1.774046 CGTTACCGCCAAACCGTTGT 61.774 55.000 0.00 0.00 32.40 3.32
348 349 0.041047 GTTACCGCCAAACCGTTGTC 60.041 55.000 0.00 0.00 32.40 3.18
349 350 1.497223 TTACCGCCAAACCGTTGTCG 61.497 55.000 0.00 0.00 35.92 4.35
350 351 4.676586 CCGCCAAACCGTTGTCGC 62.677 66.667 0.00 0.00 34.85 5.19
351 352 3.943034 CGCCAAACCGTTGTCGCA 61.943 61.111 0.00 0.00 28.35 5.10
352 353 2.409651 GCCAAACCGTTGTCGCAA 59.590 55.556 0.00 0.00 35.54 4.85
353 354 1.007849 GCCAAACCGTTGTCGCAAT 60.008 52.632 0.00 0.00 35.54 3.56
354 355 0.596341 GCCAAACCGTTGTCGCAATT 60.596 50.000 0.00 0.00 35.54 2.32
355 356 1.846541 CCAAACCGTTGTCGCAATTT 58.153 45.000 0.00 0.00 35.54 1.82
356 357 1.520590 CCAAACCGTTGTCGCAATTTG 59.479 47.619 0.00 0.00 35.13 2.32
357 358 1.071568 CAAACCGTTGTCGCAATTTGC 60.072 47.619 11.42 11.42 40.69 3.68
358 359 0.596341 AACCGTTGTCGCAATTTGCC 60.596 50.000 15.45 3.43 41.12 4.52
359 360 1.007964 CCGTTGTCGCAATTTGCCA 60.008 52.632 15.45 6.05 41.12 4.92
360 361 1.003262 CCGTTGTCGCAATTTGCCAG 61.003 55.000 15.45 3.03 41.12 4.85
361 362 0.040514 CGTTGTCGCAATTTGCCAGA 60.041 50.000 15.45 5.42 41.12 3.86
362 363 1.408422 GTTGTCGCAATTTGCCAGAC 58.592 50.000 15.45 16.60 41.12 3.51
363 364 0.313672 TTGTCGCAATTTGCCAGACC 59.686 50.000 19.91 8.43 41.12 3.85
364 365 0.821301 TGTCGCAATTTGCCAGACCA 60.821 50.000 19.91 10.19 41.12 4.02
365 366 0.387239 GTCGCAATTTGCCAGACCAC 60.387 55.000 15.45 0.22 41.12 4.16
366 367 0.537143 TCGCAATTTGCCAGACCACT 60.537 50.000 15.45 0.00 41.12 4.00
367 368 0.387622 CGCAATTTGCCAGACCACTG 60.388 55.000 15.45 0.00 41.12 3.66
368 369 0.668401 GCAATTTGCCAGACCACTGC 60.668 55.000 10.34 0.00 42.25 4.40
369 370 0.037975 CAATTTGCCAGACCACTGCC 60.038 55.000 0.00 0.00 42.25 4.85
370 371 1.526575 AATTTGCCAGACCACTGCCG 61.527 55.000 0.00 0.00 42.25 5.69
371 372 2.697147 ATTTGCCAGACCACTGCCGT 62.697 55.000 0.00 0.00 42.25 5.68
372 373 3.825160 TTGCCAGACCACTGCCGTC 62.825 63.158 0.00 0.00 42.25 4.79
384 385 4.789075 GCCGTCGCCGCTCACTAA 62.789 66.667 0.00 0.00 0.00 2.24
385 386 2.104331 CCGTCGCCGCTCACTAAT 59.896 61.111 0.00 0.00 0.00 1.73
386 387 1.357690 CCGTCGCCGCTCACTAATA 59.642 57.895 0.00 0.00 0.00 0.98
387 388 0.248743 CCGTCGCCGCTCACTAATAA 60.249 55.000 0.00 0.00 0.00 1.40
388 389 1.121240 CGTCGCCGCTCACTAATAAG 58.879 55.000 0.00 0.00 0.00 1.73
389 390 1.533338 CGTCGCCGCTCACTAATAAGT 60.533 52.381 0.00 0.00 35.91 2.24
406 407 3.687102 TGGTACCCACTGCCGTCG 61.687 66.667 10.07 0.00 0.00 5.12
412 413 4.457496 CCACTGCCGTCGCCAGAT 62.457 66.667 10.61 0.00 0.00 2.90
413 414 2.887568 CACTGCCGTCGCCAGATC 60.888 66.667 10.61 0.00 0.00 2.75
414 415 3.071206 ACTGCCGTCGCCAGATCT 61.071 61.111 10.61 0.00 0.00 2.75
415 416 2.279120 CTGCCGTCGCCAGATCTC 60.279 66.667 0.00 0.00 0.00 2.75
416 417 4.193334 TGCCGTCGCCAGATCTCG 62.193 66.667 0.00 0.00 0.00 4.04
417 418 4.194720 GCCGTCGCCAGATCTCGT 62.195 66.667 0.00 0.00 0.00 4.18
418 419 2.490217 CCGTCGCCAGATCTCGTT 59.510 61.111 0.00 0.00 0.00 3.85
419 420 1.153823 CCGTCGCCAGATCTCGTTT 60.154 57.895 0.00 0.00 0.00 3.60
420 421 0.099968 CCGTCGCCAGATCTCGTTTA 59.900 55.000 0.00 0.00 0.00 2.01
421 422 1.189403 CGTCGCCAGATCTCGTTTAC 58.811 55.000 0.00 0.00 0.00 2.01
422 423 1.202154 CGTCGCCAGATCTCGTTTACT 60.202 52.381 0.00 0.00 0.00 2.24
423 424 2.031314 CGTCGCCAGATCTCGTTTACTA 59.969 50.000 0.00 0.00 0.00 1.82
424 425 3.486375 CGTCGCCAGATCTCGTTTACTAA 60.486 47.826 0.00 0.00 0.00 2.24
425 426 4.036352 GTCGCCAGATCTCGTTTACTAAG 58.964 47.826 0.00 0.00 0.00 2.18
426 427 3.693085 TCGCCAGATCTCGTTTACTAAGT 59.307 43.478 0.00 0.00 0.00 2.24
427 428 4.877823 TCGCCAGATCTCGTTTACTAAGTA 59.122 41.667 0.00 0.00 0.00 2.24
428 429 5.530171 TCGCCAGATCTCGTTTACTAAGTAT 59.470 40.000 0.00 0.00 0.00 2.12
429 430 6.039047 TCGCCAGATCTCGTTTACTAAGTATT 59.961 38.462 0.00 0.00 0.00 1.89
430 431 6.696148 CGCCAGATCTCGTTTACTAAGTATTT 59.304 38.462 0.00 0.00 0.00 1.40
431 432 7.222224 CGCCAGATCTCGTTTACTAAGTATTTT 59.778 37.037 0.00 0.00 0.00 1.82
432 433 8.880750 GCCAGATCTCGTTTACTAAGTATTTTT 58.119 33.333 0.00 0.00 0.00 1.94
455 456 8.924511 TTTGAGGATTTGAACTCTAAGAATGT 57.075 30.769 0.00 0.00 34.84 2.71
456 457 8.924511 TTGAGGATTTGAACTCTAAGAATGTT 57.075 30.769 0.00 0.00 34.84 2.71
457 458 8.924511 TGAGGATTTGAACTCTAAGAATGTTT 57.075 30.769 0.00 0.00 34.84 2.83
458 459 9.354673 TGAGGATTTGAACTCTAAGAATGTTTT 57.645 29.630 0.00 0.00 34.84 2.43
459 460 9.833182 GAGGATTTGAACTCTAAGAATGTTTTC 57.167 33.333 0.00 0.00 0.00 2.29
460 461 8.797438 AGGATTTGAACTCTAAGAATGTTTTCC 58.203 33.333 0.00 0.00 31.84 3.13
461 462 8.029522 GGATTTGAACTCTAAGAATGTTTTCCC 58.970 37.037 0.00 0.00 31.84 3.97
462 463 8.712228 ATTTGAACTCTAAGAATGTTTTCCCT 57.288 30.769 0.00 0.00 31.84 4.20
463 464 9.807921 ATTTGAACTCTAAGAATGTTTTCCCTA 57.192 29.630 0.00 0.00 31.84 3.53
464 465 8.617290 TTGAACTCTAAGAATGTTTTCCCTAC 57.383 34.615 0.00 0.00 31.84 3.18
465 466 6.872020 TGAACTCTAAGAATGTTTTCCCTACG 59.128 38.462 0.00 0.00 31.84 3.51
466 467 5.731591 ACTCTAAGAATGTTTTCCCTACGG 58.268 41.667 0.00 0.00 31.84 4.02
467 468 5.482878 ACTCTAAGAATGTTTTCCCTACGGA 59.517 40.000 0.00 0.00 35.88 4.69
468 469 6.013984 ACTCTAAGAATGTTTTCCCTACGGAA 60.014 38.462 0.00 0.00 46.91 4.30
478 479 4.654389 TTCCCTACGGAAACCCATTAAA 57.346 40.909 0.00 0.00 45.54 1.52
479 480 4.866327 TCCCTACGGAAACCCATTAAAT 57.134 40.909 0.00 0.00 34.19 1.40
480 481 4.784177 TCCCTACGGAAACCCATTAAATC 58.216 43.478 0.00 0.00 34.19 2.17
481 482 3.562557 CCCTACGGAAACCCATTAAATCG 59.437 47.826 0.00 0.00 0.00 3.34
482 483 4.193865 CCTACGGAAACCCATTAAATCGT 58.806 43.478 0.00 0.00 0.00 3.73
483 484 5.358922 CCTACGGAAACCCATTAAATCGTA 58.641 41.667 0.00 0.00 0.00 3.43
484 485 5.464389 CCTACGGAAACCCATTAAATCGTAG 59.536 44.000 11.17 11.17 44.49 3.51
485 486 4.193865 ACGGAAACCCATTAAATCGTAGG 58.806 43.478 0.00 0.00 0.00 3.18
486 487 4.080975 ACGGAAACCCATTAAATCGTAGGA 60.081 41.667 0.00 0.00 0.00 2.94
487 488 5.061179 CGGAAACCCATTAAATCGTAGGAT 58.939 41.667 0.00 0.00 0.00 3.24
488 489 6.183360 ACGGAAACCCATTAAATCGTAGGATA 60.183 38.462 0.00 0.00 31.01 2.59
489 490 6.367969 CGGAAACCCATTAAATCGTAGGATAG 59.632 42.308 0.00 0.00 31.01 2.08
490 491 6.653740 GGAAACCCATTAAATCGTAGGATAGG 59.346 42.308 0.00 0.00 31.01 2.57
491 492 5.757099 ACCCATTAAATCGTAGGATAGGG 57.243 43.478 13.65 13.65 38.52 3.53
492 493 5.408824 ACCCATTAAATCGTAGGATAGGGA 58.591 41.667 18.58 1.92 36.44 4.20
493 494 5.247792 ACCCATTAAATCGTAGGATAGGGAC 59.752 44.000 18.58 0.00 36.44 4.46
494 495 5.484290 CCCATTAAATCGTAGGATAGGGACT 59.516 44.000 0.00 0.00 46.37 3.85
514 515 9.495382 AGGGACTACTAAGTTTCTATCAAATCT 57.505 33.333 0.00 0.00 36.02 2.40
525 526 8.844244 AGTTTCTATCAAATCTATTCATGTGCC 58.156 33.333 0.00 0.00 0.00 5.01
526 527 7.750229 TTCTATCAAATCTATTCATGTGCCC 57.250 36.000 0.00 0.00 0.00 5.36
527 528 6.840527 TCTATCAAATCTATTCATGTGCCCA 58.159 36.000 0.00 0.00 0.00 5.36
528 529 7.464273 TCTATCAAATCTATTCATGTGCCCAT 58.536 34.615 0.00 0.00 0.00 4.00
529 530 8.605065 TCTATCAAATCTATTCATGTGCCCATA 58.395 33.333 0.00 0.00 0.00 2.74
530 531 9.404848 CTATCAAATCTATTCATGTGCCCATAT 57.595 33.333 0.00 0.00 0.00 1.78
531 532 8.660295 ATCAAATCTATTCATGTGCCCATATT 57.340 30.769 0.00 0.00 0.00 1.28
532 533 7.888424 TCAAATCTATTCATGTGCCCATATTG 58.112 34.615 0.00 0.00 0.00 1.90
533 534 5.909621 ATCTATTCATGTGCCCATATTGC 57.090 39.130 0.00 0.00 0.00 3.56
534 535 4.727677 TCTATTCATGTGCCCATATTGCA 58.272 39.130 0.00 0.00 36.12 4.08
535 536 5.326900 TCTATTCATGTGCCCATATTGCAT 58.673 37.500 0.33 0.00 41.46 3.96
536 537 3.737032 TTCATGTGCCCATATTGCATG 57.263 42.857 0.33 0.00 41.46 4.06
537 538 1.964933 TCATGTGCCCATATTGCATGG 59.035 47.619 0.00 0.00 41.46 3.66
538 539 1.964933 CATGTGCCCATATTGCATGGA 59.035 47.619 6.39 0.00 41.46 3.41
539 540 2.156102 TGTGCCCATATTGCATGGAA 57.844 45.000 6.39 0.79 41.46 3.53
540 541 2.464782 TGTGCCCATATTGCATGGAAA 58.535 42.857 2.94 0.00 41.46 3.13
541 542 2.168106 TGTGCCCATATTGCATGGAAAC 59.832 45.455 2.94 4.96 41.46 2.78
542 543 1.761784 TGCCCATATTGCATGGAAACC 59.238 47.619 2.94 0.00 41.64 3.27
543 544 2.041701 GCCCATATTGCATGGAAACCT 58.958 47.619 2.94 0.00 41.64 3.50
544 545 2.036346 GCCCATATTGCATGGAAACCTC 59.964 50.000 2.94 0.00 41.64 3.85
545 546 3.298619 CCCATATTGCATGGAAACCTCA 58.701 45.455 2.94 0.00 41.64 3.86
546 547 3.899360 CCCATATTGCATGGAAACCTCAT 59.101 43.478 2.94 0.00 41.64 2.90
547 548 4.345837 CCCATATTGCATGGAAACCTCATT 59.654 41.667 2.94 0.00 41.64 2.57
548 549 5.163280 CCCATATTGCATGGAAACCTCATTT 60.163 40.000 2.94 0.00 41.64 2.32
549 550 6.350906 CCATATTGCATGGAAACCTCATTTT 58.649 36.000 2.94 0.00 41.64 1.82
550 551 7.418827 CCCATATTGCATGGAAACCTCATTTTA 60.419 37.037 2.94 0.00 41.64 1.52
551 552 8.152246 CCATATTGCATGGAAACCTCATTTTAT 58.848 33.333 2.94 0.00 41.64 1.40
552 553 9.550406 CATATTGCATGGAAACCTCATTTTATT 57.450 29.630 2.94 0.00 0.00 1.40
554 555 7.903995 TTGCATGGAAACCTCATTTTATTTC 57.096 32.000 0.00 0.00 0.00 2.17
555 556 7.243604 TGCATGGAAACCTCATTTTATTTCT 57.756 32.000 0.00 0.00 32.72 2.52
556 557 7.322664 TGCATGGAAACCTCATTTTATTTCTC 58.677 34.615 0.00 0.00 32.72 2.87
557 558 6.758416 GCATGGAAACCTCATTTTATTTCTCC 59.242 38.462 0.00 0.00 32.72 3.71
558 559 7.364144 GCATGGAAACCTCATTTTATTTCTCCT 60.364 37.037 0.00 0.00 32.72 3.69
559 560 8.534496 CATGGAAACCTCATTTTATTTCTCCTT 58.466 33.333 0.00 0.00 32.72 3.36
560 561 8.491045 TGGAAACCTCATTTTATTTCTCCTTT 57.509 30.769 0.00 0.00 32.72 3.11
561 562 8.585018 TGGAAACCTCATTTTATTTCTCCTTTC 58.415 33.333 0.00 0.00 32.72 2.62
562 563 8.807118 GGAAACCTCATTTTATTTCTCCTTTCT 58.193 33.333 0.00 0.00 32.72 2.52
566 567 9.987272 ACCTCATTTTATTTCTCCTTTCTTTTG 57.013 29.630 0.00 0.00 0.00 2.44
567 568 8.929746 CCTCATTTTATTTCTCCTTTCTTTTGC 58.070 33.333 0.00 0.00 0.00 3.68
568 569 8.519492 TCATTTTATTTCTCCTTTCTTTTGCG 57.481 30.769 0.00 0.00 0.00 4.85
569 570 8.356657 TCATTTTATTTCTCCTTTCTTTTGCGA 58.643 29.630 0.00 0.00 0.00 5.10
570 571 8.977505 CATTTTATTTCTCCTTTCTTTTGCGAA 58.022 29.630 0.00 0.00 0.00 4.70
571 572 8.934507 TTTTATTTCTCCTTTCTTTTGCGAAA 57.065 26.923 0.00 0.00 0.00 3.46
572 573 9.541143 TTTTATTTCTCCTTTCTTTTGCGAAAT 57.459 25.926 0.00 0.00 34.91 2.17
573 574 8.742554 TTATTTCTCCTTTCTTTTGCGAAATC 57.257 30.769 0.00 0.00 33.33 2.17
574 575 5.766150 TTCTCCTTTCTTTTGCGAAATCA 57.234 34.783 0.00 0.00 32.90 2.57
575 576 5.964958 TCTCCTTTCTTTTGCGAAATCAT 57.035 34.783 0.00 0.00 32.90 2.45
576 577 6.331369 TCTCCTTTCTTTTGCGAAATCATT 57.669 33.333 0.00 0.00 32.90 2.57
577 578 6.748132 TCTCCTTTCTTTTGCGAAATCATTT 58.252 32.000 0.00 0.00 32.90 2.32
578 579 7.209475 TCTCCTTTCTTTTGCGAAATCATTTT 58.791 30.769 0.00 0.00 32.90 1.82
589 590 8.687824 TTGCGAAATCATTTTATTTCTCCTTC 57.312 30.769 7.49 0.00 41.62 3.46
599 600 7.761038 TTTTATTTCTCCTTCAAGAAGTCCC 57.239 36.000 8.83 0.00 36.66 4.46
600 601 6.704056 TTATTTCTCCTTCAAGAAGTCCCT 57.296 37.500 8.83 0.00 36.66 4.20
608 609 3.771577 TCAAGAAGTCCCTTCCACTTC 57.228 47.619 4.69 4.69 46.99 3.01
622 623 1.336332 CCACTTCCGCTCTATCCATCG 60.336 57.143 0.00 0.00 0.00 3.84
650 651 7.693969 TCTCTTCTCAATTCTCCAAAATTCC 57.306 36.000 0.00 0.00 0.00 3.01
655 656 5.047802 TCTCAATTCTCCAAAATTCCTGTGC 60.048 40.000 0.00 0.00 0.00 4.57
779 789 2.130193 TCCTGCAATCCTATGAAGCCT 58.870 47.619 0.00 0.00 0.00 4.58
781 791 3.053395 TCCTGCAATCCTATGAAGCCTTT 60.053 43.478 0.00 0.00 0.00 3.11
868 879 4.092821 ACAGCAAAAAGGCGAAAGAAAAAC 59.907 37.500 0.00 0.00 39.27 2.43
883 894 8.398665 CGAAAGAAAAACCTATTATAAGCAGCT 58.601 33.333 0.00 0.00 0.00 4.24
908 919 5.414144 CCTGTTCCAAAAAGAAAAGGCAAAA 59.586 36.000 0.00 0.00 42.89 2.44
909 920 6.072230 CCTGTTCCAAAAAGAAAAGGCAAAAA 60.072 34.615 0.00 0.00 42.89 1.94
1080 1093 2.503382 GCCCACTCCGATCTCTCCC 61.503 68.421 0.00 0.00 0.00 4.30
1081 1094 1.231641 CCCACTCCGATCTCTCCCT 59.768 63.158 0.00 0.00 0.00 4.20
1082 1095 0.825840 CCCACTCCGATCTCTCCCTC 60.826 65.000 0.00 0.00 0.00 4.30
1106 1119 0.613777 ATATCCCGCCCCGAGAATTC 59.386 55.000 0.00 0.00 0.00 2.17
1119 1132 2.807108 CGAGAATTCCCCTCGGATTTCC 60.807 54.545 0.65 0.00 46.85 3.13
1130 1143 3.388272 GGATTTCCTTCCGGAGCTC 57.612 57.895 3.34 4.71 41.25 4.09
1219 1232 2.781595 GATCACACGGAAGGCGTGGT 62.782 60.000 0.93 0.00 41.17 4.16
1234 1247 0.318762 GTGGTGGAGACTGACTGACC 59.681 60.000 0.00 0.00 0.00 4.02
1244 1257 3.827898 GACTGACCGAGGGCTCCG 61.828 72.222 0.00 0.00 0.00 4.63
1357 1375 1.543941 CCGCGCGCTCTCTAGATTTG 61.544 60.000 30.48 8.45 0.00 2.32
1514 1533 2.126071 CGGTCGTTGCTGGATCGT 60.126 61.111 0.00 0.00 33.51 3.73
1664 1686 2.442830 GGCCTCCTGGATTTGGGC 60.443 66.667 14.58 14.58 41.80 5.36
1709 1731 4.087892 GCGCTGAGCCTGAAGGGA 62.088 66.667 0.00 0.00 40.81 4.20
1790 1812 4.593864 GAGATCAGGGCGCGGGTC 62.594 72.222 8.83 6.04 0.00 4.46
1847 1869 0.832135 TTCAGCTGTCGGAGGAGGTT 60.832 55.000 14.67 0.00 0.00 3.50
1904 1926 1.749258 GGGGAAGCGCCTCGATTTT 60.749 57.895 2.29 0.00 35.04 1.82
1919 1941 1.742268 GATTTTCCTGAGCAGCCTGTC 59.258 52.381 0.00 0.00 0.00 3.51
1998 2020 8.293699 TCTTTGTAATAGAGCTGTACATCTCA 57.706 34.615 24.51 13.26 0.00 3.27
1999 2021 8.918116 TCTTTGTAATAGAGCTGTACATCTCAT 58.082 33.333 24.51 14.62 0.00 2.90
2027 2050 3.004629 TGCAAGGCTGAACTTACATGTTG 59.995 43.478 2.30 0.00 0.00 3.33
2046 2073 8.522830 ACATGTTGGTTGAATAAATAGTTCCTG 58.477 33.333 0.00 0.00 0.00 3.86
2059 2086 6.869206 AATAGTTCCTGTCTTTAGTGCCTA 57.131 37.500 0.00 0.00 0.00 3.93
2099 2126 7.678947 AGTCTAGAATCAAACTGTGAATTGG 57.321 36.000 0.00 0.00 40.50 3.16
2111 2138 5.410067 ACTGTGAATTGGAAATTATTGCGG 58.590 37.500 0.00 0.00 0.00 5.69
2113 2140 5.167121 TGTGAATTGGAAATTATTGCGGTG 58.833 37.500 0.00 0.00 0.00 4.94
2135 2162 4.508551 ACATACATGTCATGGTGACCAT 57.491 40.909 12.20 12.20 46.40 3.55
2136 2163 5.628797 ACATACATGTCATGGTGACCATA 57.371 39.130 18.08 1.84 46.40 2.74
2144 2171 8.271458 ACATGTCATGGTGACCATATACTTTAA 58.729 33.333 18.08 3.49 46.40 1.52
2371 2404 9.023962 TGCTATATTTTTCCTTTGATCAGTGTT 57.976 29.630 0.00 0.00 0.00 3.32
2450 2484 9.151471 CGAGAAAAAGGTATGTCTTGATTCTAA 57.849 33.333 0.00 0.00 35.62 2.10
2595 2629 2.348998 CATCCTATCCCAGGCGCC 59.651 66.667 21.89 21.89 45.10 6.53
2628 2662 5.108385 TCCAAAATCTTTCTTCGTTCTGC 57.892 39.130 0.00 0.00 0.00 4.26
2788 2822 4.683832 AGTGGATCGAGAAGTTTTATCCG 58.316 43.478 0.00 0.00 39.20 4.18
2869 2903 5.644644 CCAAAATCAGAGATTTGCAGGTAC 58.355 41.667 5.81 0.00 35.66 3.34
2877 2911 2.930040 AGATTTGCAGGTACGATTGTCG 59.070 45.455 0.00 0.00 46.93 4.35
2878 2912 2.442212 TTTGCAGGTACGATTGTCGA 57.558 45.000 6.34 0.00 43.74 4.20
2909 2945 7.660208 ACGTTATTCTAGTTTCCAGTCACATTT 59.340 33.333 0.00 0.00 0.00 2.32
2916 2952 6.966534 AGTTTCCAGTCACATTTGAAGATT 57.033 33.333 0.00 0.00 31.90 2.40
2939 2975 3.243704 GGACATGCAGTCTGACTAGGATC 60.244 52.174 10.47 5.07 46.72 3.36
3031 3067 7.561021 TGTTCTCAGCTAGTCTTACAGATAG 57.439 40.000 0.00 0.00 0.00 2.08
3071 3107 3.799281 TCTTTTGGTGCTCAGGTTTTG 57.201 42.857 0.00 0.00 0.00 2.44
3188 3224 2.577563 TGGTGTGGATCAATCACATCCT 59.422 45.455 10.26 0.00 45.32 3.24
3269 3305 2.235898 ACCTGAGAGCTGACATTCTTCC 59.764 50.000 0.00 0.00 0.00 3.46
3465 3522 2.553028 GGTGGAAGGCAATCAGACTCAA 60.553 50.000 0.00 0.00 30.53 3.02
3493 3551 2.781757 TGCCCTGAGATGATCCAAGATT 59.218 45.455 0.00 0.00 0.00 2.40
3555 3613 2.678336 GCATGTTAGCTTCTGTGGTACC 59.322 50.000 4.43 4.43 0.00 3.34
3573 3631 1.338973 ACCGTGGTGTATATACTGCCG 59.661 52.381 13.89 10.09 0.00 5.69
3665 3742 2.111384 TCCTATGTCCTGAGTCCTTGC 58.889 52.381 0.00 0.00 0.00 4.01
3692 3771 2.478894 CAGTTGCGTGTTAAGTACCCAG 59.521 50.000 0.00 0.00 0.00 4.45
3723 3802 1.722464 CGTTCGCTTCGGTGAATACAA 59.278 47.619 0.00 0.00 44.71 2.41
3760 3839 4.947388 CGGATTTGAATTTGGAAGGGAGTA 59.053 41.667 0.00 0.00 0.00 2.59
3782 3861 7.100409 AGTAATGAGGTAGAAAAGAGAAGCAC 58.900 38.462 0.00 0.00 0.00 4.40
3788 3867 4.930405 GGTAGAAAAGAGAAGCACTGTACC 59.070 45.833 0.00 0.00 0.00 3.34
3854 3933 8.646900 TGGCAAATAAGTTTTTGAATACCTCTT 58.353 29.630 12.03 0.00 38.58 2.85
3939 4019 4.392138 CAGTTTTTCGGGTGAAGACCTATC 59.608 45.833 0.00 0.00 42.66 2.08
3941 4021 4.837093 TTTTCGGGTGAAGACCTATCAT 57.163 40.909 0.00 0.00 42.66 2.45
3971 4051 5.359194 AACTGCTATGCCAGTATACTTGT 57.641 39.130 1.56 0.00 44.86 3.16
4008 4088 4.019792 ACACTCACCATATGCACTTGAA 57.980 40.909 0.00 0.00 0.00 2.69
4021 4101 3.119743 TGCACTTGAAATATCAGCAGCAC 60.120 43.478 0.00 0.00 36.78 4.40
4051 4131 2.378547 AGCTGGGGAAATAAGGACAACA 59.621 45.455 0.00 0.00 0.00 3.33
4064 4144 1.160137 GACAACAGGGTCATGTGAGC 58.840 55.000 3.70 3.70 41.50 4.26
4325 4420 1.156736 CTCGCTTCATCCAACCGTTT 58.843 50.000 0.00 0.00 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.726853 GACTCAAAGATCACACGGGG 58.273 55.000 0.00 0.00 0.00 5.73
3 4 1.336887 ACGACTCAAAGATCACACGGG 60.337 52.381 0.00 0.00 0.00 5.28
4 5 1.721389 CACGACTCAAAGATCACACGG 59.279 52.381 0.00 0.00 0.00 4.94
5 6 1.125021 GCACGACTCAAAGATCACACG 59.875 52.381 0.00 0.00 0.00 4.49
6 7 2.135139 TGCACGACTCAAAGATCACAC 58.865 47.619 0.00 0.00 0.00 3.82
7 8 2.035832 TCTGCACGACTCAAAGATCACA 59.964 45.455 0.00 0.00 0.00 3.58
8 9 2.677199 TCTGCACGACTCAAAGATCAC 58.323 47.619 0.00 0.00 0.00 3.06
9 10 3.385193 TTCTGCACGACTCAAAGATCA 57.615 42.857 0.00 0.00 0.00 2.92
10 11 4.645956 CAATTCTGCACGACTCAAAGATC 58.354 43.478 0.00 0.00 0.00 2.75
11 12 4.675190 CAATTCTGCACGACTCAAAGAT 57.325 40.909 0.00 0.00 0.00 2.40
25 26 0.458669 GGCTCATGGGTGCAATTCTG 59.541 55.000 0.00 0.00 35.26 3.02
26 27 0.333993 AGGCTCATGGGTGCAATTCT 59.666 50.000 0.00 0.00 35.26 2.40
27 28 0.743097 GAGGCTCATGGGTGCAATTC 59.257 55.000 10.25 0.00 35.26 2.17
28 29 0.333993 AGAGGCTCATGGGTGCAATT 59.666 50.000 18.26 0.00 35.26 2.32
29 30 0.106819 GAGAGGCTCATGGGTGCAAT 60.107 55.000 18.26 0.00 35.26 3.56
30 31 1.203441 AGAGAGGCTCATGGGTGCAA 61.203 55.000 18.26 0.00 35.26 4.08
31 32 0.325577 TAGAGAGGCTCATGGGTGCA 60.326 55.000 18.26 0.00 35.26 4.57
32 33 0.105778 GTAGAGAGGCTCATGGGTGC 59.894 60.000 18.26 0.00 32.06 5.01
33 34 1.686052 GAGTAGAGAGGCTCATGGGTG 59.314 57.143 18.26 0.00 32.06 4.61
34 35 1.289231 TGAGTAGAGAGGCTCATGGGT 59.711 52.381 18.26 0.00 36.89 4.51
35 36 2.079170 TGAGTAGAGAGGCTCATGGG 57.921 55.000 18.26 0.00 36.89 4.00
39 40 3.819368 CTCTGATGAGTAGAGAGGCTCA 58.181 50.000 18.26 0.00 43.41 4.26
40 41 2.554032 GCTCTGATGAGTAGAGAGGCTC 59.446 54.545 6.34 6.34 43.41 4.70
41 42 2.091939 TGCTCTGATGAGTAGAGAGGCT 60.092 50.000 6.22 0.00 43.41 4.58
42 43 2.305928 TGCTCTGATGAGTAGAGAGGC 58.694 52.381 6.22 0.00 43.41 4.70
43 44 4.401022 AGATGCTCTGATGAGTAGAGAGG 58.599 47.826 6.22 0.00 43.41 3.69
44 45 4.456911 GGAGATGCTCTGATGAGTAGAGAG 59.543 50.000 6.22 0.00 43.41 3.20
45 46 4.141298 TGGAGATGCTCTGATGAGTAGAGA 60.141 45.833 6.22 0.00 43.41 3.10
46 47 4.143543 TGGAGATGCTCTGATGAGTAGAG 58.856 47.826 0.00 0.00 43.54 2.43
47 48 4.176120 TGGAGATGCTCTGATGAGTAGA 57.824 45.455 0.00 0.00 42.13 2.59
48 49 4.933505 TTGGAGATGCTCTGATGAGTAG 57.066 45.455 0.00 0.00 42.13 2.57
49 50 5.668471 CTTTTGGAGATGCTCTGATGAGTA 58.332 41.667 0.00 0.00 42.13 2.59
50 51 4.515361 CTTTTGGAGATGCTCTGATGAGT 58.485 43.478 0.00 0.00 42.13 3.41
51 52 3.312973 GCTTTTGGAGATGCTCTGATGAG 59.687 47.826 0.00 0.00 42.96 2.90
52 53 3.276857 GCTTTTGGAGATGCTCTGATGA 58.723 45.455 0.00 0.00 0.00 2.92
53 54 2.358267 GGCTTTTGGAGATGCTCTGATG 59.642 50.000 0.00 0.00 0.00 3.07
54 55 2.241685 AGGCTTTTGGAGATGCTCTGAT 59.758 45.455 0.00 0.00 0.00 2.90
55 56 1.632409 AGGCTTTTGGAGATGCTCTGA 59.368 47.619 0.00 0.00 0.00 3.27
56 57 2.015587 GAGGCTTTTGGAGATGCTCTG 58.984 52.381 0.00 0.00 0.00 3.35
57 58 1.064832 GGAGGCTTTTGGAGATGCTCT 60.065 52.381 0.00 0.00 0.00 4.09
58 59 1.387539 GGAGGCTTTTGGAGATGCTC 58.612 55.000 0.00 0.00 0.00 4.26
59 60 0.393537 CGGAGGCTTTTGGAGATGCT 60.394 55.000 0.00 0.00 0.00 3.79
60 61 1.379642 CCGGAGGCTTTTGGAGATGC 61.380 60.000 0.00 0.00 46.14 3.91
61 62 2.785868 CCGGAGGCTTTTGGAGATG 58.214 57.895 0.00 0.00 46.14 2.90
93 94 8.753497 AAAAGGTTTATTGCCAATACCAAAAA 57.247 26.923 11.08 0.00 0.00 1.94
94 95 7.171678 CGAAAAGGTTTATTGCCAATACCAAAA 59.828 33.333 11.08 0.00 0.00 2.44
95 96 6.647067 CGAAAAGGTTTATTGCCAATACCAAA 59.353 34.615 11.08 0.00 0.00 3.28
96 97 6.159988 CGAAAAGGTTTATTGCCAATACCAA 58.840 36.000 11.08 0.00 0.00 3.67
97 98 5.244178 ACGAAAAGGTTTATTGCCAATACCA 59.756 36.000 11.08 0.00 0.00 3.25
98 99 5.716094 ACGAAAAGGTTTATTGCCAATACC 58.284 37.500 0.00 0.00 0.00 2.73
99 100 8.803799 CAATACGAAAAGGTTTATTGCCAATAC 58.196 33.333 0.00 0.00 0.00 1.89
100 101 8.740906 TCAATACGAAAAGGTTTATTGCCAATA 58.259 29.630 0.00 0.00 33.66 1.90
101 102 7.607250 TCAATACGAAAAGGTTTATTGCCAAT 58.393 30.769 0.00 0.00 33.66 3.16
102 103 6.982852 TCAATACGAAAAGGTTTATTGCCAA 58.017 32.000 0.00 0.00 33.66 4.52
103 104 6.576662 TCAATACGAAAAGGTTTATTGCCA 57.423 33.333 0.00 0.00 33.66 4.92
104 105 7.810759 TCTTTCAATACGAAAAGGTTTATTGCC 59.189 33.333 0.00 0.00 43.01 4.52
105 106 8.736751 TCTTTCAATACGAAAAGGTTTATTGC 57.263 30.769 0.00 0.00 43.01 3.56
106 107 9.893305 ACTCTTTCAATACGAAAAGGTTTATTG 57.107 29.630 0.00 0.00 43.01 1.90
108 109 9.893305 CAACTCTTTCAATACGAAAAGGTTTAT 57.107 29.630 0.00 0.00 43.01 1.40
109 110 9.111613 TCAACTCTTTCAATACGAAAAGGTTTA 57.888 29.630 0.00 0.00 43.01 2.01
110 111 7.992008 TCAACTCTTTCAATACGAAAAGGTTT 58.008 30.769 0.00 0.00 43.01 3.27
111 112 7.562454 TCAACTCTTTCAATACGAAAAGGTT 57.438 32.000 0.00 0.00 43.01 3.50
112 113 6.293462 GCTCAACTCTTTCAATACGAAAAGGT 60.293 38.462 0.00 0.00 43.01 3.50
113 114 6.080406 GCTCAACTCTTTCAATACGAAAAGG 58.920 40.000 0.00 0.00 43.01 3.11
114 115 6.080406 GGCTCAACTCTTTCAATACGAAAAG 58.920 40.000 0.00 0.00 43.01 2.27
115 116 5.529430 TGGCTCAACTCTTTCAATACGAAAA 59.471 36.000 0.00 0.00 43.01 2.29
116 117 5.060506 TGGCTCAACTCTTTCAATACGAAA 58.939 37.500 0.00 0.00 41.40 3.46
117 118 4.637276 TGGCTCAACTCTTTCAATACGAA 58.363 39.130 0.00 0.00 0.00 3.85
118 119 4.265904 TGGCTCAACTCTTTCAATACGA 57.734 40.909 0.00 0.00 0.00 3.43
119 120 5.356882 TTTGGCTCAACTCTTTCAATACG 57.643 39.130 0.00 0.00 0.00 3.06
140 141 9.284968 AGTACTACTACATTGAAGCATGTTTTT 57.715 29.630 0.00 0.00 32.63 1.94
141 142 8.848474 AGTACTACTACATTGAAGCATGTTTT 57.152 30.769 0.00 0.00 32.63 2.43
142 143 8.094548 TGAGTACTACTACATTGAAGCATGTTT 58.905 33.333 0.00 0.00 32.63 2.83
143 144 7.611770 TGAGTACTACTACATTGAAGCATGTT 58.388 34.615 0.00 0.00 32.63 2.71
144 145 7.170393 TGAGTACTACTACATTGAAGCATGT 57.830 36.000 0.00 0.00 34.99 3.21
145 146 6.199908 GCTGAGTACTACTACATTGAAGCATG 59.800 42.308 0.00 0.00 0.00 4.06
146 147 6.276847 GCTGAGTACTACTACATTGAAGCAT 58.723 40.000 0.00 0.00 0.00 3.79
147 148 5.394224 GGCTGAGTACTACTACATTGAAGCA 60.394 44.000 0.00 0.00 0.00 3.91
148 149 5.044558 GGCTGAGTACTACTACATTGAAGC 58.955 45.833 0.00 0.00 0.00 3.86
149 150 5.066117 TCGGCTGAGTACTACTACATTGAAG 59.934 44.000 0.00 0.00 0.00 3.02
150 151 4.945543 TCGGCTGAGTACTACTACATTGAA 59.054 41.667 0.00 0.00 0.00 2.69
151 152 4.520179 TCGGCTGAGTACTACTACATTGA 58.480 43.478 0.00 0.00 0.00 2.57
152 153 4.895224 TCGGCTGAGTACTACTACATTG 57.105 45.455 0.00 0.00 0.00 2.82
153 154 5.378332 AGATCGGCTGAGTACTACTACATT 58.622 41.667 0.00 0.00 0.00 2.71
154 155 4.975631 AGATCGGCTGAGTACTACTACAT 58.024 43.478 0.00 0.00 0.00 2.29
155 156 4.378774 GAGATCGGCTGAGTACTACTACA 58.621 47.826 0.00 0.00 0.00 2.74
156 157 3.747529 GGAGATCGGCTGAGTACTACTAC 59.252 52.174 0.00 0.00 0.00 2.73
157 158 3.244491 GGGAGATCGGCTGAGTACTACTA 60.244 52.174 0.00 0.00 0.00 1.82
158 159 2.487625 GGGAGATCGGCTGAGTACTACT 60.488 54.545 0.00 0.00 0.00 2.57
159 160 1.881324 GGGAGATCGGCTGAGTACTAC 59.119 57.143 0.00 1.19 0.00 2.73
160 161 1.202903 GGGGAGATCGGCTGAGTACTA 60.203 57.143 0.00 0.00 0.00 1.82
161 162 0.468400 GGGGAGATCGGCTGAGTACT 60.468 60.000 0.00 0.00 0.00 2.73
162 163 1.797211 CGGGGAGATCGGCTGAGTAC 61.797 65.000 0.00 0.00 0.00 2.73
163 164 1.528542 CGGGGAGATCGGCTGAGTA 60.529 63.158 0.00 0.00 0.00 2.59
164 165 2.835431 CGGGGAGATCGGCTGAGT 60.835 66.667 0.00 0.00 0.00 3.41
165 166 4.292178 GCGGGGAGATCGGCTGAG 62.292 72.222 0.00 0.00 0.00 3.35
166 167 2.715181 ATAGCGGGGAGATCGGCTGA 62.715 60.000 0.00 0.00 42.10 4.26
167 168 0.965866 TATAGCGGGGAGATCGGCTG 60.966 60.000 7.08 0.00 42.10 4.85
168 169 0.033011 ATATAGCGGGGAGATCGGCT 60.033 55.000 0.00 0.00 43.91 5.52
169 170 1.688772 TATATAGCGGGGAGATCGGC 58.311 55.000 0.00 0.00 0.00 5.54
170 171 5.710567 TCAATATATATAGCGGGGAGATCGG 59.289 44.000 0.00 0.00 0.00 4.18
171 172 6.819397 TCAATATATATAGCGGGGAGATCG 57.181 41.667 0.00 0.00 0.00 3.69
172 173 8.410673 TCTTCAATATATATAGCGGGGAGATC 57.589 38.462 0.00 0.00 0.00 2.75
173 174 8.783660 TTCTTCAATATATATAGCGGGGAGAT 57.216 34.615 0.00 0.00 0.00 2.75
174 175 8.783660 ATTCTTCAATATATATAGCGGGGAGA 57.216 34.615 0.00 0.00 0.00 3.71
175 176 9.838339 AAATTCTTCAATATATATAGCGGGGAG 57.162 33.333 0.00 0.00 0.00 4.30
176 177 9.613428 CAAATTCTTCAATATATATAGCGGGGA 57.387 33.333 0.00 0.00 0.00 4.81
177 178 8.840321 CCAAATTCTTCAATATATATAGCGGGG 58.160 37.037 0.00 0.00 0.00 5.73
178 179 8.345565 GCCAAATTCTTCAATATATATAGCGGG 58.654 37.037 0.00 0.00 0.00 6.13
179 180 8.345565 GGCCAAATTCTTCAATATATATAGCGG 58.654 37.037 0.00 0.00 0.00 5.52
180 181 9.113838 AGGCCAAATTCTTCAATATATATAGCG 57.886 33.333 5.01 0.00 0.00 4.26
185 186 9.950496 GAGAGAGGCCAAATTCTTCAATATATA 57.050 33.333 5.01 0.00 0.00 0.86
186 187 7.887495 GGAGAGAGGCCAAATTCTTCAATATAT 59.113 37.037 5.01 0.00 0.00 0.86
187 188 7.072961 AGGAGAGAGGCCAAATTCTTCAATATA 59.927 37.037 5.01 0.00 0.00 0.86
188 189 6.067350 GGAGAGAGGCCAAATTCTTCAATAT 58.933 40.000 5.01 0.00 0.00 1.28
189 190 5.192522 AGGAGAGAGGCCAAATTCTTCAATA 59.807 40.000 5.01 0.00 0.00 1.90
190 191 4.017683 AGGAGAGAGGCCAAATTCTTCAAT 60.018 41.667 5.01 0.00 0.00 2.57
191 192 3.331889 AGGAGAGAGGCCAAATTCTTCAA 59.668 43.478 5.01 0.00 0.00 2.69
192 193 2.915604 AGGAGAGAGGCCAAATTCTTCA 59.084 45.455 5.01 0.00 0.00 3.02
193 194 3.643199 AGGAGAGAGGCCAAATTCTTC 57.357 47.619 5.01 0.36 0.00 2.87
194 195 5.723860 ATTAGGAGAGAGGCCAAATTCTT 57.276 39.130 5.01 0.00 0.00 2.52
195 196 7.399674 AATATTAGGAGAGAGGCCAAATTCT 57.600 36.000 5.01 0.00 0.00 2.40
196 197 8.470657 AAAATATTAGGAGAGAGGCCAAATTC 57.529 34.615 5.01 0.00 0.00 2.17
197 198 8.844865 AAAAATATTAGGAGAGAGGCCAAATT 57.155 30.769 5.01 0.00 0.00 1.82
219 220 6.537301 ACAGACGTGACACTTATTGAGAAAAA 59.463 34.615 3.68 0.00 0.00 1.94
220 221 6.019075 CACAGACGTGACACTTATTGAGAAAA 60.019 38.462 3.68 0.00 46.80 2.29
221 222 5.462068 CACAGACGTGACACTTATTGAGAAA 59.538 40.000 3.68 0.00 46.80 2.52
222 223 4.982295 CACAGACGTGACACTTATTGAGAA 59.018 41.667 3.68 0.00 46.80 2.87
223 224 4.037565 ACACAGACGTGACACTTATTGAGA 59.962 41.667 3.68 0.00 46.80 3.27
224 225 4.299155 ACACAGACGTGACACTTATTGAG 58.701 43.478 3.68 0.00 46.80 3.02
225 226 4.316205 ACACAGACGTGACACTTATTGA 57.684 40.909 3.68 0.00 46.80 2.57
226 227 5.861787 TGATACACAGACGTGACACTTATTG 59.138 40.000 3.68 0.00 46.80 1.90
227 228 5.862323 GTGATACACAGACGTGACACTTATT 59.138 40.000 3.68 0.00 46.80 1.40
228 229 5.183331 AGTGATACACAGACGTGACACTTAT 59.817 40.000 3.68 0.00 46.80 1.73
229 230 4.517832 AGTGATACACAGACGTGACACTTA 59.482 41.667 3.68 0.00 46.80 2.24
230 231 3.318275 AGTGATACACAGACGTGACACTT 59.682 43.478 3.68 0.00 46.80 3.16
231 232 2.885266 AGTGATACACAGACGTGACACT 59.115 45.455 3.68 13.87 46.80 3.55
232 233 3.235195 GAGTGATACACAGACGTGACAC 58.765 50.000 0.00 0.00 46.80 3.67
233 234 2.882137 TGAGTGATACACAGACGTGACA 59.118 45.455 0.00 0.00 46.80 3.58
234 235 3.554259 TGAGTGATACACAGACGTGAC 57.446 47.619 0.00 0.00 46.80 3.67
235 236 3.568430 ACTTGAGTGATACACAGACGTGA 59.432 43.478 0.00 0.00 46.80 4.35
237 238 4.379603 GCTACTTGAGTGATACACAGACGT 60.380 45.833 4.75 0.00 36.74 4.34
238 239 4.099120 GCTACTTGAGTGATACACAGACG 58.901 47.826 4.75 0.00 36.74 4.18
239 240 4.425520 GGCTACTTGAGTGATACACAGAC 58.574 47.826 4.75 0.00 36.74 3.51
240 241 3.447586 GGGCTACTTGAGTGATACACAGA 59.552 47.826 4.75 0.00 36.74 3.41
241 242 3.735208 CGGGCTACTTGAGTGATACACAG 60.735 52.174 4.75 0.00 36.74 3.66
242 243 2.165641 CGGGCTACTTGAGTGATACACA 59.834 50.000 4.75 0.00 36.74 3.72
243 244 2.810650 CGGGCTACTTGAGTGATACAC 58.189 52.381 0.00 0.00 34.10 2.90
244 245 1.136305 GCGGGCTACTTGAGTGATACA 59.864 52.381 0.00 0.00 0.00 2.29
245 246 1.538419 GGCGGGCTACTTGAGTGATAC 60.538 57.143 0.00 0.00 0.00 2.24
246 247 0.750850 GGCGGGCTACTTGAGTGATA 59.249 55.000 0.00 0.00 0.00 2.15
247 248 1.264749 TGGCGGGCTACTTGAGTGAT 61.265 55.000 2.38 0.00 0.00 3.06
248 249 1.888436 CTGGCGGGCTACTTGAGTGA 61.888 60.000 2.38 0.00 0.00 3.41
249 250 1.448540 CTGGCGGGCTACTTGAGTG 60.449 63.158 2.38 0.00 0.00 3.51
250 251 0.978146 ATCTGGCGGGCTACTTGAGT 60.978 55.000 2.38 0.00 0.00 3.41
251 252 0.249657 GATCTGGCGGGCTACTTGAG 60.250 60.000 2.38 0.00 0.00 3.02
252 253 0.975556 TGATCTGGCGGGCTACTTGA 60.976 55.000 2.38 0.00 0.00 3.02
253 254 0.811616 GTGATCTGGCGGGCTACTTG 60.812 60.000 2.38 0.00 0.00 3.16
254 255 1.522569 GTGATCTGGCGGGCTACTT 59.477 57.895 2.38 0.00 0.00 2.24
255 256 2.435693 GGTGATCTGGCGGGCTACT 61.436 63.158 2.38 0.00 0.00 2.57
256 257 2.109181 GGTGATCTGGCGGGCTAC 59.891 66.667 2.38 0.00 0.00 3.58
257 258 3.536917 CGGTGATCTGGCGGGCTA 61.537 66.667 2.38 0.00 0.00 3.93
262 263 4.758251 TGGCACGGTGATCTGGCG 62.758 66.667 13.29 0.00 35.74 5.69
263 264 2.124570 ATGGCACGGTGATCTGGC 60.125 61.111 13.29 0.00 0.00 4.85
264 265 1.884464 CGATGGCACGGTGATCTGG 60.884 63.158 13.29 0.00 0.00 3.86
265 266 2.528743 GCGATGGCACGGTGATCTG 61.529 63.158 13.29 5.12 39.62 2.90
266 267 2.202932 GCGATGGCACGGTGATCT 60.203 61.111 13.29 0.00 39.62 2.75
267 268 3.272334 GGCGATGGCACGGTGATC 61.272 66.667 13.29 6.05 42.47 2.92
268 269 3.405093 ATGGCGATGGCACGGTGAT 62.405 57.895 13.29 0.00 41.84 3.06
269 270 4.094646 ATGGCGATGGCACGGTGA 62.095 61.111 13.29 0.00 41.84 4.02
270 271 3.576356 GATGGCGATGGCACGGTG 61.576 66.667 3.15 3.15 41.84 4.94
298 299 2.504519 GACCTATGGCGGTGGTCC 59.495 66.667 10.29 0.00 43.10 4.46
299 300 2.106332 CGACCTATGGCGGTGGTC 59.894 66.667 11.09 11.09 44.82 4.02
300 301 4.157120 GCGACCTATGGCGGTGGT 62.157 66.667 0.00 0.00 37.42 4.16
301 302 4.910585 GGCGACCTATGGCGGTGG 62.911 72.222 0.00 0.00 37.42 4.61
302 303 4.155733 TGGCGACCTATGGCGGTG 62.156 66.667 0.00 0.00 37.42 4.94
303 304 3.849951 CTGGCGACCTATGGCGGT 61.850 66.667 0.00 0.00 40.80 5.68
304 305 2.771763 GATCTGGCGACCTATGGCGG 62.772 65.000 0.00 0.00 39.48 6.13
305 306 1.373497 GATCTGGCGACCTATGGCG 60.373 63.158 0.00 0.00 34.03 5.69
306 307 0.601311 GTGATCTGGCGACCTATGGC 60.601 60.000 0.00 0.00 0.00 4.40
307 308 0.034059 GGTGATCTGGCGACCTATGG 59.966 60.000 0.00 0.00 0.00 2.74
308 309 0.319040 CGGTGATCTGGCGACCTATG 60.319 60.000 0.00 0.00 0.00 2.23
309 310 2.041976 CGGTGATCTGGCGACCTAT 58.958 57.895 0.00 0.00 0.00 2.57
310 311 2.782222 GCGGTGATCTGGCGACCTA 61.782 63.158 0.00 0.00 0.00 3.08
311 312 4.148825 GCGGTGATCTGGCGACCT 62.149 66.667 0.00 0.00 0.00 3.85
316 317 2.171725 GGTAACGCGGTGATCTGGC 61.172 63.158 7.07 0.00 0.00 4.85
317 318 4.104143 GGTAACGCGGTGATCTGG 57.896 61.111 7.07 0.00 0.00 3.86
329 330 0.041047 GACAACGGTTTGGCGGTAAC 60.041 55.000 0.00 0.00 37.00 2.50
330 331 2.319219 GACAACGGTTTGGCGGTAA 58.681 52.632 0.00 0.00 37.00 2.85
331 332 4.046276 GACAACGGTTTGGCGGTA 57.954 55.556 0.00 0.00 37.00 4.02
335 336 0.596341 AATTGCGACAACGGTTTGGC 60.596 50.000 0.00 0.00 37.39 4.52
336 337 1.520590 CAAATTGCGACAACGGTTTGG 59.479 47.619 0.00 0.00 37.00 3.28
337 338 1.071568 GCAAATTGCGACAACGGTTTG 60.072 47.619 0.90 10.26 40.15 2.93
338 339 1.204792 GCAAATTGCGACAACGGTTT 58.795 45.000 0.90 0.00 40.15 3.27
339 340 0.596341 GGCAAATTGCGACAACGGTT 60.596 50.000 12.15 0.00 46.21 4.44
340 341 1.007849 GGCAAATTGCGACAACGGT 60.008 52.632 12.15 0.00 46.21 4.83
341 342 1.003262 CTGGCAAATTGCGACAACGG 61.003 55.000 12.15 0.00 46.21 4.44
342 343 0.040514 TCTGGCAAATTGCGACAACG 60.041 50.000 12.15 0.00 46.21 4.10
343 344 1.408422 GTCTGGCAAATTGCGACAAC 58.592 50.000 17.10 7.72 46.21 3.32
344 345 0.313672 GGTCTGGCAAATTGCGACAA 59.686 50.000 21.33 3.08 46.21 3.18
345 346 0.821301 TGGTCTGGCAAATTGCGACA 60.821 50.000 21.33 11.20 46.21 4.35
346 347 0.387239 GTGGTCTGGCAAATTGCGAC 60.387 55.000 12.15 13.66 46.21 5.19
347 348 0.537143 AGTGGTCTGGCAAATTGCGA 60.537 50.000 12.15 7.23 46.21 5.10
348 349 0.387622 CAGTGGTCTGGCAAATTGCG 60.388 55.000 12.15 0.00 46.21 4.85
349 350 0.668401 GCAGTGGTCTGGCAAATTGC 60.668 55.000 9.87 9.87 44.08 3.56
350 351 3.502237 GCAGTGGTCTGGCAAATTG 57.498 52.632 0.00 0.00 41.57 2.32
368 369 4.705386 ACTTATTAGTGAGCGGCGACGG 62.705 54.545 15.06 0.00 43.83 4.79
369 370 1.533338 ACTTATTAGTGAGCGGCGACG 60.533 52.381 12.98 6.12 45.50 5.12
370 371 2.205307 ACTTATTAGTGAGCGGCGAC 57.795 50.000 12.98 4.01 31.99 5.19
399 400 4.193334 CGAGATCTGGCGACGGCA 62.193 66.667 23.55 23.55 42.47 5.69
400 401 3.701604 AACGAGATCTGGCGACGGC 62.702 63.158 15.43 15.43 36.33 5.68
401 402 0.099968 TAAACGAGATCTGGCGACGG 59.900 55.000 10.50 0.00 38.41 4.79
402 403 1.189403 GTAAACGAGATCTGGCGACG 58.811 55.000 10.50 5.13 0.00 5.12
403 404 2.563471 AGTAAACGAGATCTGGCGAC 57.437 50.000 10.50 3.94 0.00 5.19
404 405 3.693085 ACTTAGTAAACGAGATCTGGCGA 59.307 43.478 10.50 0.00 0.00 5.54
405 406 4.030134 ACTTAGTAAACGAGATCTGGCG 57.970 45.455 0.00 0.07 0.00 5.69
406 407 8.421673 AAAATACTTAGTAAACGAGATCTGGC 57.578 34.615 0.00 0.00 0.00 4.85
429 430 9.354673 ACATTCTTAGAGTTCAAATCCTCAAAA 57.645 29.630 0.00 0.00 0.00 2.44
430 431 8.924511 ACATTCTTAGAGTTCAAATCCTCAAA 57.075 30.769 0.00 0.00 0.00 2.69
431 432 8.924511 AACATTCTTAGAGTTCAAATCCTCAA 57.075 30.769 0.00 0.00 0.00 3.02
432 433 8.924511 AAACATTCTTAGAGTTCAAATCCTCA 57.075 30.769 0.00 0.00 0.00 3.86
433 434 9.833182 GAAAACATTCTTAGAGTTCAAATCCTC 57.167 33.333 0.00 0.00 0.00 3.71
434 435 8.797438 GGAAAACATTCTTAGAGTTCAAATCCT 58.203 33.333 0.00 0.00 0.00 3.24
435 436 8.029522 GGGAAAACATTCTTAGAGTTCAAATCC 58.970 37.037 0.00 0.00 0.00 3.01
436 437 8.797438 AGGGAAAACATTCTTAGAGTTCAAATC 58.203 33.333 0.00 0.00 0.00 2.17
437 438 8.712228 AGGGAAAACATTCTTAGAGTTCAAAT 57.288 30.769 0.00 0.00 0.00 2.32
438 439 9.063615 GTAGGGAAAACATTCTTAGAGTTCAAA 57.936 33.333 0.00 0.00 0.00 2.69
439 440 7.386848 CGTAGGGAAAACATTCTTAGAGTTCAA 59.613 37.037 0.00 0.00 0.00 2.69
440 441 6.872020 CGTAGGGAAAACATTCTTAGAGTTCA 59.128 38.462 0.00 0.00 0.00 3.18
441 442 7.292129 CGTAGGGAAAACATTCTTAGAGTTC 57.708 40.000 0.00 0.00 0.00 3.01
461 462 5.464389 CCTACGATTTAATGGGTTTCCGTAG 59.536 44.000 0.00 0.00 44.25 3.51
462 463 5.128499 TCCTACGATTTAATGGGTTTCCGTA 59.872 40.000 0.00 0.00 35.24 4.02
463 464 4.080975 TCCTACGATTTAATGGGTTTCCGT 60.081 41.667 0.00 0.00 35.24 4.69
464 465 4.444536 TCCTACGATTTAATGGGTTTCCG 58.555 43.478 0.00 0.00 35.24 4.30
465 466 6.653740 CCTATCCTACGATTTAATGGGTTTCC 59.346 42.308 0.00 0.00 0.00 3.13
466 467 6.653740 CCCTATCCTACGATTTAATGGGTTTC 59.346 42.308 0.00 0.00 0.00 2.78
467 468 6.330778 TCCCTATCCTACGATTTAATGGGTTT 59.669 38.462 0.00 0.00 33.15 3.27
468 469 5.847817 TCCCTATCCTACGATTTAATGGGTT 59.152 40.000 0.00 0.00 33.15 4.11
469 470 5.247792 GTCCCTATCCTACGATTTAATGGGT 59.752 44.000 0.00 0.00 33.15 4.51
470 471 5.484290 AGTCCCTATCCTACGATTTAATGGG 59.516 44.000 0.00 0.00 0.00 4.00
471 472 6.607004 AGTCCCTATCCTACGATTTAATGG 57.393 41.667 0.00 0.00 0.00 3.16
472 473 8.350852 AGTAGTCCCTATCCTACGATTTAATG 57.649 38.462 0.00 0.00 38.82 1.90
474 475 9.512588 CTTAGTAGTCCCTATCCTACGATTTAA 57.487 37.037 0.00 0.00 38.82 1.52
475 476 8.664079 ACTTAGTAGTCCCTATCCTACGATTTA 58.336 37.037 0.00 0.00 38.82 1.40
476 477 7.525165 ACTTAGTAGTCCCTATCCTACGATTT 58.475 38.462 0.00 0.00 38.82 2.17
477 478 7.089106 ACTTAGTAGTCCCTATCCTACGATT 57.911 40.000 0.00 0.00 38.82 3.34
478 479 6.700845 ACTTAGTAGTCCCTATCCTACGAT 57.299 41.667 0.00 0.00 38.82 3.73
479 480 6.506538 AACTTAGTAGTCCCTATCCTACGA 57.493 41.667 0.00 0.00 38.82 3.43
480 481 6.997476 AGAAACTTAGTAGTCCCTATCCTACG 59.003 42.308 0.00 0.00 38.82 3.51
483 484 8.734763 TGATAGAAACTTAGTAGTCCCTATCCT 58.265 37.037 15.99 0.00 40.48 3.24
484 485 8.937207 TGATAGAAACTTAGTAGTCCCTATCC 57.063 38.462 15.99 6.78 40.48 2.59
488 489 9.495382 AGATTTGATAGAAACTTAGTAGTCCCT 57.505 33.333 0.00 0.00 31.99 4.20
499 500 8.844244 GGCACATGAATAGATTTGATAGAAACT 58.156 33.333 0.00 0.00 0.00 2.66
500 501 8.078596 GGGCACATGAATAGATTTGATAGAAAC 58.921 37.037 0.00 0.00 0.00 2.78
501 502 7.779326 TGGGCACATGAATAGATTTGATAGAAA 59.221 33.333 0.00 0.00 0.00 2.52
502 503 7.289310 TGGGCACATGAATAGATTTGATAGAA 58.711 34.615 0.00 0.00 0.00 2.10
503 504 6.840527 TGGGCACATGAATAGATTTGATAGA 58.159 36.000 0.00 0.00 0.00 1.98
504 505 7.698506 ATGGGCACATGAATAGATTTGATAG 57.301 36.000 0.00 0.00 35.57 2.08
505 506 9.758021 AATATGGGCACATGAATAGATTTGATA 57.242 29.630 12.99 0.00 37.97 2.15
506 507 8.528643 CAATATGGGCACATGAATAGATTTGAT 58.471 33.333 12.99 0.00 37.97 2.57
507 508 7.524202 GCAATATGGGCACATGAATAGATTTGA 60.524 37.037 12.99 0.00 37.97 2.69
508 509 6.588756 GCAATATGGGCACATGAATAGATTTG 59.411 38.462 12.99 3.93 37.97 2.32
509 510 6.268158 TGCAATATGGGCACATGAATAGATTT 59.732 34.615 12.99 0.00 37.97 2.17
510 511 5.776208 TGCAATATGGGCACATGAATAGATT 59.224 36.000 12.99 0.00 37.97 2.40
511 512 5.326900 TGCAATATGGGCACATGAATAGAT 58.673 37.500 12.99 0.00 37.97 1.98
512 513 4.727677 TGCAATATGGGCACATGAATAGA 58.272 39.130 12.99 0.00 37.97 1.98
513 514 5.407502 CATGCAATATGGGCACATGAATAG 58.592 41.667 12.99 0.00 45.23 1.73
514 515 4.221041 CCATGCAATATGGGCACATGAATA 59.779 41.667 12.99 0.00 45.23 1.75
515 516 3.007506 CCATGCAATATGGGCACATGAAT 59.992 43.478 12.99 0.00 45.23 2.57
516 517 2.365941 CCATGCAATATGGGCACATGAA 59.634 45.455 12.99 0.00 45.23 2.57
517 518 1.964933 CCATGCAATATGGGCACATGA 59.035 47.619 12.99 0.00 45.23 3.07
518 519 1.964933 TCCATGCAATATGGGCACATG 59.035 47.619 12.99 0.00 45.23 3.21
519 520 2.385135 TCCATGCAATATGGGCACAT 57.615 45.000 6.71 6.71 45.23 3.21
520 521 2.156102 TTCCATGCAATATGGGCACA 57.844 45.000 5.01 0.00 45.23 4.57
521 522 2.483538 GGTTTCCATGCAATATGGGCAC 60.484 50.000 5.01 2.62 45.23 5.01
522 523 1.761784 GGTTTCCATGCAATATGGGCA 59.238 47.619 5.01 4.94 46.66 5.36
523 524 2.036346 GAGGTTTCCATGCAATATGGGC 59.964 50.000 5.01 0.00 39.60 5.36
524 525 3.298619 TGAGGTTTCCATGCAATATGGG 58.701 45.455 5.01 0.00 39.60 4.00
525 526 5.540400 AATGAGGTTTCCATGCAATATGG 57.460 39.130 0.00 0.00 40.48 2.74
526 527 9.550406 AATAAAATGAGGTTTCCATGCAATATG 57.450 29.630 0.00 0.00 0.00 1.78
528 529 9.598517 GAAATAAAATGAGGTTTCCATGCAATA 57.401 29.630 0.00 0.00 0.00 1.90
529 530 8.323567 AGAAATAAAATGAGGTTTCCATGCAAT 58.676 29.630 0.00 0.00 32.43 3.56
530 531 7.678837 AGAAATAAAATGAGGTTTCCATGCAA 58.321 30.769 0.00 0.00 32.43 4.08
531 532 7.243604 AGAAATAAAATGAGGTTTCCATGCA 57.756 32.000 0.00 0.00 32.43 3.96
532 533 6.758416 GGAGAAATAAAATGAGGTTTCCATGC 59.242 38.462 0.00 0.00 32.43 4.06
533 534 8.071177 AGGAGAAATAAAATGAGGTTTCCATG 57.929 34.615 0.00 0.00 32.43 3.66
534 535 8.670521 AAGGAGAAATAAAATGAGGTTTCCAT 57.329 30.769 0.00 0.00 32.43 3.41
535 536 8.491045 AAAGGAGAAATAAAATGAGGTTTCCA 57.509 30.769 0.00 0.00 32.43 3.53
536 537 8.807118 AGAAAGGAGAAATAAAATGAGGTTTCC 58.193 33.333 0.00 0.00 32.43 3.13
540 541 9.987272 CAAAAGAAAGGAGAAATAAAATGAGGT 57.013 29.630 0.00 0.00 0.00 3.85
541 542 8.929746 GCAAAAGAAAGGAGAAATAAAATGAGG 58.070 33.333 0.00 0.00 0.00 3.86
542 543 8.642020 CGCAAAAGAAAGGAGAAATAAAATGAG 58.358 33.333 0.00 0.00 0.00 2.90
543 544 8.356657 TCGCAAAAGAAAGGAGAAATAAAATGA 58.643 29.630 0.00 0.00 0.00 2.57
544 545 8.519492 TCGCAAAAGAAAGGAGAAATAAAATG 57.481 30.769 0.00 0.00 0.00 2.32
545 546 9.541143 TTTCGCAAAAGAAAGGAGAAATAAAAT 57.459 25.926 0.00 0.00 35.44 1.82
546 547 8.934507 TTTCGCAAAAGAAAGGAGAAATAAAA 57.065 26.923 0.00 0.00 35.44 1.52
547 548 9.191995 GATTTCGCAAAAGAAAGGAGAAATAAA 57.808 29.630 0.00 0.00 42.52 1.40
548 549 8.356657 TGATTTCGCAAAAGAAAGGAGAAATAA 58.643 29.630 0.00 0.00 42.52 1.40
549 550 7.881142 TGATTTCGCAAAAGAAAGGAGAAATA 58.119 30.769 0.00 0.00 42.52 1.40
550 551 6.748132 TGATTTCGCAAAAGAAAGGAGAAAT 58.252 32.000 0.00 0.00 42.52 2.17
551 552 6.142818 TGATTTCGCAAAAGAAAGGAGAAA 57.857 33.333 0.00 0.00 42.52 2.52
552 553 5.766150 TGATTTCGCAAAAGAAAGGAGAA 57.234 34.783 0.00 0.00 42.52 2.87
553 554 5.964958 ATGATTTCGCAAAAGAAAGGAGA 57.035 34.783 0.00 0.00 42.52 3.71
554 555 7.412137 AAAATGATTTCGCAAAAGAAAGGAG 57.588 32.000 0.00 0.00 42.52 3.69
555 556 9.487790 AATAAAATGATTTCGCAAAAGAAAGGA 57.512 25.926 0.00 0.00 42.52 3.36
560 561 9.139174 GGAGAAATAAAATGATTTCGCAAAAGA 57.861 29.630 12.53 0.00 46.19 2.52
561 562 9.143631 AGGAGAAATAAAATGATTTCGCAAAAG 57.856 29.630 12.53 0.00 46.19 2.27
562 563 9.487790 AAGGAGAAATAAAATGATTTCGCAAAA 57.512 25.926 12.53 0.00 46.19 2.44
563 564 9.139174 GAAGGAGAAATAAAATGATTTCGCAAA 57.861 29.630 12.53 0.00 46.19 3.68
564 565 8.303156 TGAAGGAGAAATAAAATGATTTCGCAA 58.697 29.630 12.53 0.00 46.19 4.85
565 566 7.825681 TGAAGGAGAAATAAAATGATTTCGCA 58.174 30.769 12.53 2.94 46.19 5.10
566 567 8.687824 TTGAAGGAGAAATAAAATGATTTCGC 57.312 30.769 0.00 4.61 46.19 4.70
572 573 9.014297 GGACTTCTTGAAGGAGAAATAAAATGA 57.986 33.333 7.65 0.00 35.38 2.57
573 574 8.246871 GGGACTTCTTGAAGGAGAAATAAAATG 58.753 37.037 7.65 0.00 35.38 2.32
574 575 8.173412 AGGGACTTCTTGAAGGAGAAATAAAAT 58.827 33.333 7.65 0.00 35.38 1.82
575 576 7.526918 AGGGACTTCTTGAAGGAGAAATAAAA 58.473 34.615 7.65 0.00 35.38 1.52
576 577 7.091533 AGGGACTTCTTGAAGGAGAAATAAA 57.908 36.000 7.65 0.00 35.38 1.40
577 578 6.704056 AGGGACTTCTTGAAGGAGAAATAA 57.296 37.500 7.65 0.00 35.38 1.40
599 600 1.757118 TGGATAGAGCGGAAGTGGAAG 59.243 52.381 0.00 0.00 0.00 3.46
600 601 1.860641 TGGATAGAGCGGAAGTGGAA 58.139 50.000 0.00 0.00 0.00 3.53
608 609 0.389166 GAAGGCGATGGATAGAGCGG 60.389 60.000 0.00 0.00 0.00 5.52
622 623 4.213564 TGGAGAATTGAGAAGAGAAGGC 57.786 45.455 0.00 0.00 0.00 4.35
650 651 5.940192 TGGTACATAGAAAACAAGCACAG 57.060 39.130 0.00 0.00 0.00 3.66
702 704 4.539726 AGATGTCACCAACCATGCAATAT 58.460 39.130 0.00 0.00 0.00 1.28
707 709 1.825090 TGAGATGTCACCAACCATGC 58.175 50.000 0.00 0.00 0.00 4.06
740 742 8.506168 TGCAGGATTTAAAAATGTAGGAGTAG 57.494 34.615 0.00 0.00 0.00 2.57
743 753 7.922811 GGATTGCAGGATTTAAAAATGTAGGAG 59.077 37.037 0.00 0.00 0.00 3.69
772 782 9.995003 ACATTTTTATCACATTTAAAGGCTTCA 57.005 25.926 0.00 0.00 0.00 3.02
868 879 5.221722 TGGAACAGGAGCTGCTTATAATAGG 60.222 44.000 4.36 0.00 34.37 2.57
883 894 3.772025 TGCCTTTTCTTTTTGGAACAGGA 59.228 39.130 11.97 0.00 42.55 3.86
916 927 0.872388 GTGATCGTGGGCTCGTTTTT 59.128 50.000 3.18 0.00 0.00 1.94
917 928 0.953960 GGTGATCGTGGGCTCGTTTT 60.954 55.000 3.18 0.00 0.00 2.43
1032 1044 4.536295 TTTCTTGGGTTTTTCCTCTCCT 57.464 40.909 0.00 0.00 36.25 3.69
1080 1093 2.348998 GGGCGGGATATGCTGGAG 59.651 66.667 5.10 0.00 0.00 3.86
1081 1094 3.249189 GGGGCGGGATATGCTGGA 61.249 66.667 5.10 0.00 0.00 3.86
1082 1095 4.704833 CGGGGCGGGATATGCTGG 62.705 72.222 5.10 0.00 0.00 4.85
1219 1232 0.609406 CCTCGGTCAGTCAGTCTCCA 60.609 60.000 0.00 0.00 0.00 3.86
1270 1283 2.303676 GCGAGATCGGATCGGTTGC 61.304 63.158 12.08 10.70 40.50 4.17
1465 1484 1.227263 CCTCGGCTTACCATGTCGG 60.227 63.158 0.00 0.00 42.50 4.79
1650 1672 2.830370 GGCGCCCAAATCCAGGAG 60.830 66.667 18.11 0.00 0.00 3.69
1727 1749 4.020617 CTCCTGAACCTGCCGCCA 62.021 66.667 0.00 0.00 0.00 5.69
1826 1848 1.254284 CCTCCTCCGACAGCTGAACT 61.254 60.000 23.35 0.00 0.00 3.01
1847 1869 0.320683 CATCCACACTCTTCACGCCA 60.321 55.000 0.00 0.00 0.00 5.69
1904 1926 3.005539 GGGACAGGCTGCTCAGGA 61.006 66.667 15.89 0.00 0.00 3.86
1919 1941 2.012051 GCAACCACCATCTTAGTCGGG 61.012 57.143 0.00 0.00 0.00 5.14
1991 2013 4.519350 CAGCCTTGCATAATCATGAGATGT 59.481 41.667 17.36 0.00 33.90 3.06
1998 2020 5.887598 TGTAAGTTCAGCCTTGCATAATCAT 59.112 36.000 0.00 0.00 33.02 2.45
1999 2021 5.252547 TGTAAGTTCAGCCTTGCATAATCA 58.747 37.500 0.00 0.00 33.02 2.57
2046 2073 4.636206 CCATGAAACCTAGGCACTAAAGAC 59.364 45.833 9.30 0.00 42.17 3.01
2059 2086 4.777896 TCTAGACTAAGCACCATGAAACCT 59.222 41.667 0.00 0.00 0.00 3.50
2099 2126 6.494842 ACATGTATGTCACCGCAATAATTTC 58.505 36.000 0.00 0.00 35.87 2.17
2144 2171 9.574516 AAGGAACTGAAAGACAATGTTACTTAT 57.425 29.630 0.00 0.00 40.86 1.73
2177 2204 8.954834 AAATAGCACCATAATGGGAATTGATA 57.045 30.769 0.00 0.00 43.37 2.15
2186 2213 7.065683 TGCACGATATAAATAGCACCATAATGG 59.934 37.037 0.00 0.00 45.02 3.16
2371 2404 5.153513 GCAAACAGATGCAAGACGAATTAA 58.846 37.500 0.00 0.00 45.70 1.40
2497 2531 9.275398 TGCAGCAATTTAGAAAAATTCTTGATT 57.725 25.926 0.00 0.00 42.18 2.57
2504 2538 8.782339 ATTAGCTGCAGCAATTTAGAAAAATT 57.218 26.923 38.24 16.23 44.35 1.82
2595 2629 0.305922 GATTTTGGAGCGCATCTCGG 59.694 55.000 11.47 0.00 42.82 4.63
2604 2638 5.149977 CAGAACGAAGAAAGATTTTGGAGC 58.850 41.667 0.00 0.00 0.00 4.70
2788 2822 2.936202 TGGATCTGCTCAAATAAGCCC 58.064 47.619 0.00 0.00 41.77 5.19
2869 2903 4.561606 AGAATAACGTTCCTTCGACAATCG 59.438 41.667 2.82 0.00 42.10 3.34
2877 2911 6.872547 ACTGGAAACTAGAATAACGTTCCTTC 59.127 38.462 2.82 9.69 0.00 3.46
2878 2912 6.766429 ACTGGAAACTAGAATAACGTTCCTT 58.234 36.000 2.82 0.00 0.00 3.36
2909 2945 3.008266 TCAGACTGCATGTCCAATCTTCA 59.992 43.478 11.24 0.00 46.46 3.02
2916 2952 1.827344 CCTAGTCAGACTGCATGTCCA 59.173 52.381 13.84 0.00 46.46 4.02
2975 3011 9.719355 TGACAGCTTAAAATGAGATAGTAAACA 57.281 29.630 0.00 0.00 0.00 2.83
3071 3107 5.297278 AGCGTATCTCGGGTTATCATCTATC 59.703 44.000 0.00 0.00 40.26 2.08
3188 3224 3.650942 AGTTATGAACCTTGGTCACCAGA 59.349 43.478 0.00 0.00 33.81 3.86
3269 3305 1.662629 CTGCTGCTAACATCGGACAAG 59.337 52.381 0.00 0.00 0.00 3.16
3465 3522 4.032310 GGATCATCTCAGGGCATCTAGAT 58.968 47.826 0.00 0.00 0.00 1.98
3493 3551 0.946528 GCATGTGACTGTGAGTGCAA 59.053 50.000 0.00 0.00 33.09 4.08
3555 3613 1.000607 AGCGGCAGTATATACACCACG 60.001 52.381 19.40 15.73 0.00 4.94
3665 3742 2.540931 ACTTAACACGCAACTGTAACCG 59.459 45.455 0.00 0.00 0.00 4.44
3692 3771 2.034001 CGAAGCGAACGGATTAACCATC 60.034 50.000 0.00 0.00 38.90 3.51
3723 3802 5.446143 TCAAATCCGCTTGTGTTTTACAT 57.554 34.783 0.00 0.00 39.48 2.29
3760 3839 5.936956 CAGTGCTTCTCTTTTCTACCTCATT 59.063 40.000 0.00 0.00 0.00 2.57
3798 3877 6.488769 AATTCATATTCACATTGTGGGCAT 57.511 33.333 16.46 9.05 33.87 4.40
3854 3933 7.288810 ACCATGCTTTGAGATTTGTAAGAAA 57.711 32.000 0.00 0.00 0.00 2.52
3918 3998 4.320870 TGATAGGTCTTCACCCGAAAAAC 58.679 43.478 0.00 0.00 45.12 2.43
3939 4019 5.240183 ACTGGCATAGCAGTTTTAGCATATG 59.760 40.000 0.00 0.00 0.00 1.78
3941 4021 4.780815 ACTGGCATAGCAGTTTTAGCATA 58.219 39.130 0.00 0.00 0.00 3.14
3971 4051 7.681679 TGGTGAGTGTATGGTTTGTATTCTTA 58.318 34.615 0.00 0.00 0.00 2.10
4008 4088 1.133976 GGTGAGGGTGCTGCTGATATT 60.134 52.381 0.00 0.00 0.00 1.28
4021 4101 2.080336 TTTCCCCAGCTTGGTGAGGG 62.080 60.000 15.47 15.47 41.12 4.30
4064 4144 2.918712 AATTATGAGCGACTCCAGGG 57.081 50.000 4.73 0.00 0.00 4.45
4087 4167 8.248945 CGAAAGAATCCTAGTCCAACTAAGTAA 58.751 37.037 0.00 0.00 29.00 2.24
4107 4187 0.179004 TGGAGCAAAAGCCCGAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
4255 4347 9.229784 CACAATTGCACTCATTATTATCAAGAC 57.770 33.333 5.05 0.00 0.00 3.01
4274 4369 0.963962 AGCAGGACCAAGCACAATTG 59.036 50.000 3.24 3.24 0.00 2.32
4325 4420 9.368674 CCATAATTCACATAAGCAAAACATTGA 57.631 29.630 0.00 0.00 0.00 2.57
4546 4650 6.262273 GGTAAAATTTCTGTCTTCCTGTGTCA 59.738 38.462 0.00 0.00 0.00 3.58
4548 4652 6.126409 TGGTAAAATTTCTGTCTTCCTGTGT 58.874 36.000 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.