Multiple sequence alignment - TraesCS7A01G156800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G156800 chr7A 100.000 4625 0 0 1 4625 109354592 109359216 0.000000e+00 8541.0
1 TraesCS7A01G156800 chr7A 94.118 119 7 0 215 333 560407039 560407157 1.020000e-41 182.0
2 TraesCS7A01G156800 chr7D 90.945 1789 102 25 681 2450 104900046 104901793 0.000000e+00 2351.0
3 TraesCS7A01G156800 chr7D 92.149 1312 73 14 2524 3817 104901934 104903233 0.000000e+00 1825.0
4 TraesCS7A01G156800 chr7D 82.105 760 84 31 3621 4347 104920908 104921648 1.840000e-168 603.0
5 TraesCS7A01G156800 chr7D 95.690 116 4 1 219 333 280404814 280404929 7.900000e-43 185.0
6 TraesCS7A01G156800 chr7B 92.089 1441 73 18 2477 3891 63568646 63570071 0.000000e+00 1991.0
7 TraesCS7A01G156800 chr7B 93.165 673 43 2 1603 2272 63567662 63568334 0.000000e+00 985.0
8 TraesCS7A01G156800 chr7B 89.777 763 52 15 811 1571 63566922 63567660 0.000000e+00 953.0
9 TraesCS7A01G156800 chr7B 87.056 394 28 10 4120 4502 63621997 63622378 1.540000e-114 424.0
10 TraesCS7A01G156800 chr7B 88.669 353 19 4 3666 3999 63621524 63621874 1.200000e-110 411.0
11 TraesCS7A01G156800 chr7B 95.595 227 8 2 331 557 63564863 63565087 3.400000e-96 363.0
12 TraesCS7A01G156800 chr7B 92.941 170 7 2 1 170 63564585 63564749 4.620000e-60 243.0
13 TraesCS7A01G156800 chr7B 87.310 197 11 5 2256 2449 63568350 63568535 3.620000e-51 213.0
14 TraesCS7A01G156800 chr7B 96.460 113 4 0 221 333 452155255 452155143 2.200000e-43 187.0
15 TraesCS7A01G156800 chr7B 79.798 198 21 10 3948 4141 63570191 63570373 4.860000e-25 126.0
16 TraesCS7A01G156800 chr5B 88.184 347 34 4 1653 1997 98282064 98282405 1.550000e-109 407.0
17 TraesCS7A01G156800 chr5B 83.562 73 10 2 334 405 37716084 37716155 2.990000e-07 67.6
18 TraesCS7A01G156800 chr6A 95.798 119 5 0 4507 4625 235484208 235484090 4.720000e-45 193.0
19 TraesCS7A01G156800 chr6A 94.262 122 7 0 4504 4625 417634480 417634359 2.200000e-43 187.0
20 TraesCS7A01G156800 chr3A 98.165 109 2 0 227 335 57873863 57873971 1.700000e-44 191.0
21 TraesCS7A01G156800 chr3A 94.017 117 7 0 4509 4625 565557997 565557881 1.320000e-40 178.0
22 TraesCS7A01G156800 chr3A 93.277 119 8 0 4507 4625 449661992 449662110 4.760000e-40 176.0
23 TraesCS7A01G156800 chr3A 91.270 126 9 2 4501 4625 136565248 136565372 2.210000e-38 171.0
24 TraesCS7A01G156800 chr2D 96.552 116 3 1 220 334 62385916 62385801 1.700000e-44 191.0
25 TraesCS7A01G156800 chr4A 94.915 118 4 2 216 333 649897870 649897985 2.840000e-42 183.0
26 TraesCS7A01G156800 chr1D 90.141 142 10 4 213 353 66558421 66558283 1.020000e-41 182.0
27 TraesCS7A01G156800 chr3D 94.118 119 6 1 4507 4625 120308054 120308171 3.680000e-41 180.0
28 TraesCS7A01G156800 chrUn 92.800 125 6 3 220 343 283389611 283389489 1.320000e-40 178.0
29 TraesCS7A01G156800 chrUn 93.277 119 8 0 4507 4625 71739175 71739057 4.760000e-40 176.0
30 TraesCS7A01G156800 chrUn 90.385 104 9 1 994 1096 74549326 74549429 8.070000e-28 135.0
31 TraesCS7A01G156800 chrUn 83.562 73 10 2 334 405 65719905 65719976 2.990000e-07 67.6
32 TraesCS7A01G156800 chr5A 92.800 125 6 3 210 333 657200443 657200321 1.320000e-40 178.0
33 TraesCS7A01G156800 chr1A 94.068 118 4 3 4506 4622 505747141 505747256 4.760000e-40 176.0
34 TraesCS7A01G156800 chr2A 93.277 119 7 1 4507 4625 461165981 461166098 1.710000e-39 174.0
35 TraesCS7A01G156800 chr6D 87.963 108 11 2 994 1100 431460185 431460291 4.860000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G156800 chr7A 109354592 109359216 4624 False 8541.000000 8541 100.000000 1 4625 1 chr7A.!!$F1 4624
1 TraesCS7A01G156800 chr7D 104900046 104903233 3187 False 2088.000000 2351 91.547000 681 3817 2 chr7D.!!$F3 3136
2 TraesCS7A01G156800 chr7D 104920908 104921648 740 False 603.000000 603 82.105000 3621 4347 1 chr7D.!!$F1 726
3 TraesCS7A01G156800 chr7B 63564585 63570373 5788 False 696.285714 1991 90.096429 1 4141 7 chr7B.!!$F1 4140
4 TraesCS7A01G156800 chr7B 63621524 63622378 854 False 417.500000 424 87.862500 3666 4502 2 chr7B.!!$F2 836

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 387 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44 F
1427 3075 0.396139 TTGGATGGATGGCTTCCTGC 60.396 55.000 19.03 11.13 45.68 4.85 F
3383 5158 0.244721 TGGCATGACACGAGTCTCAG 59.755 55.000 14.15 5.27 45.20 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1531 3179 0.036010 GGGTGGTCAGAGGACACATG 60.036 60.0 0.00 0.00 46.17 3.21 R
3399 5174 0.391528 TCATGACACACGAGGCATGG 60.392 55.0 18.13 5.32 38.82 3.66 R
4533 6475 0.105760 TGTTCACACCAGGGGCATTT 60.106 50.0 0.00 0.00 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.106683 CCAAATGAGGTCGACGCCC 61.107 63.158 9.92 1.46 0.00 6.13
61 62 1.745489 GCGGCTGTAAGGTGGGAAG 60.745 63.158 0.00 0.00 0.00 3.46
71 72 6.049955 TGTAAGGTGGGAAGAATCTTACTG 57.950 41.667 5.07 0.00 39.96 2.74
80 81 5.163301 GGGAAGAATCTTACTGCTACATGGA 60.163 44.000 5.07 0.00 0.00 3.41
144 145 2.735444 CGTGAGTCGCCACTATGAATGT 60.735 50.000 0.00 0.00 35.02 2.71
145 146 3.488553 CGTGAGTCGCCACTATGAATGTA 60.489 47.826 0.00 0.00 35.02 2.29
146 147 4.045104 GTGAGTCGCCACTATGAATGTAG 58.955 47.826 0.00 0.00 34.38 2.74
147 148 3.699538 TGAGTCGCCACTATGAATGTAGT 59.300 43.478 0.00 0.00 35.34 2.73
156 157 9.042008 CGCCACTATGAATGTAGTAGTAAATTT 57.958 33.333 0.00 0.00 33.29 1.82
226 289 5.163540 GGTCGACCATTCTACTCTTGTATGT 60.164 44.000 29.75 0.00 35.64 2.29
227 290 6.039047 GGTCGACCATTCTACTCTTGTATGTA 59.961 42.308 29.75 0.00 35.64 2.29
228 291 6.911511 GTCGACCATTCTACTCTTGTATGTAC 59.088 42.308 3.51 0.00 0.00 2.90
229 292 6.827251 TCGACCATTCTACTCTTGTATGTACT 59.173 38.462 0.00 0.00 0.00 2.73
230 293 7.012138 TCGACCATTCTACTCTTGTATGTACTC 59.988 40.741 0.00 0.00 0.00 2.59
231 294 7.012515 CGACCATTCTACTCTTGTATGTACTCT 59.987 40.741 0.00 0.00 0.00 3.24
232 295 8.228035 ACCATTCTACTCTTGTATGTACTCTC 57.772 38.462 0.00 0.00 0.00 3.20
233 296 8.056400 ACCATTCTACTCTTGTATGTACTCTCT 58.944 37.037 0.00 0.00 0.00 3.10
234 297 8.564574 CCATTCTACTCTTGTATGTACTCTCTC 58.435 40.741 0.00 0.00 0.00 3.20
235 298 8.564574 CATTCTACTCTTGTATGTACTCTCTCC 58.435 40.741 0.00 0.00 0.00 3.71
236 299 6.282167 TCTACTCTTGTATGTACTCTCTCCG 58.718 44.000 0.00 0.00 0.00 4.63
237 300 4.846040 ACTCTTGTATGTACTCTCTCCGT 58.154 43.478 0.00 0.00 0.00 4.69
238 301 5.254901 ACTCTTGTATGTACTCTCTCCGTT 58.745 41.667 0.00 0.00 0.00 4.44
239 302 5.711036 ACTCTTGTATGTACTCTCTCCGTTT 59.289 40.000 0.00 0.00 0.00 3.60
240 303 5.950883 TCTTGTATGTACTCTCTCCGTTTG 58.049 41.667 0.00 0.00 0.00 2.93
241 304 4.713824 TGTATGTACTCTCTCCGTTTGG 57.286 45.455 0.00 0.00 0.00 3.28
242 305 4.338012 TGTATGTACTCTCTCCGTTTGGA 58.662 43.478 0.00 0.00 43.88 3.53
243 306 4.768448 TGTATGTACTCTCTCCGTTTGGAA 59.232 41.667 0.00 0.00 45.87 3.53
244 307 5.421056 TGTATGTACTCTCTCCGTTTGGAAT 59.579 40.000 0.00 0.00 45.87 3.01
245 308 4.884668 TGTACTCTCTCCGTTTGGAATT 57.115 40.909 0.00 0.00 45.87 2.17
246 309 5.988310 TGTACTCTCTCCGTTTGGAATTA 57.012 39.130 0.00 0.00 45.87 1.40
247 310 5.717119 TGTACTCTCTCCGTTTGGAATTAC 58.283 41.667 0.00 0.00 45.87 1.89
248 311 5.479375 TGTACTCTCTCCGTTTGGAATTACT 59.521 40.000 0.00 0.00 45.87 2.24
249 312 5.485209 ACTCTCTCCGTTTGGAATTACTT 57.515 39.130 0.00 0.00 45.87 2.24
250 313 5.238583 ACTCTCTCCGTTTGGAATTACTTG 58.761 41.667 0.00 0.00 45.87 3.16
251 314 5.221661 ACTCTCTCCGTTTGGAATTACTTGT 60.222 40.000 0.00 0.00 45.87 3.16
252 315 5.235516 TCTCTCCGTTTGGAATTACTTGTC 58.764 41.667 0.00 0.00 45.87 3.18
253 316 5.011738 TCTCTCCGTTTGGAATTACTTGTCT 59.988 40.000 0.00 0.00 45.87 3.41
254 317 5.235516 TCTCCGTTTGGAATTACTTGTCTC 58.764 41.667 0.00 0.00 45.87 3.36
255 318 3.991773 TCCGTTTGGAATTACTTGTCTCG 59.008 43.478 0.00 0.00 42.85 4.04
256 319 3.124636 CCGTTTGGAATTACTTGTCTCGG 59.875 47.826 0.00 0.00 37.49 4.63
257 320 3.991773 CGTTTGGAATTACTTGTCTCGGA 59.008 43.478 0.00 0.00 0.00 4.55
258 321 4.449743 CGTTTGGAATTACTTGTCTCGGAA 59.550 41.667 0.00 0.00 0.00 4.30
259 322 5.049954 CGTTTGGAATTACTTGTCTCGGAAA 60.050 40.000 0.00 0.00 0.00 3.13
260 323 6.348213 CGTTTGGAATTACTTGTCTCGGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
261 324 6.494893 TTGGAATTACTTGTCTCGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
262 325 4.941263 TGGAATTACTTGTCTCGGAAATGG 59.059 41.667 0.00 0.00 0.00 3.16
263 326 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
264 327 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
265 328 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
266 329 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
267 330 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
268 331 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
269 332 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
270 333 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
271 334 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
272 335 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
273 336 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
274 337 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
275 338 7.233553 TGTCTCGGAAATGGATGTATCTAGAAT 59.766 37.037 0.00 0.00 0.00 2.40
276 339 8.091449 GTCTCGGAAATGGATGTATCTAGAATT 58.909 37.037 0.00 0.00 0.00 2.17
277 340 9.309224 TCTCGGAAATGGATGTATCTAGAATTA 57.691 33.333 0.00 0.00 0.00 1.40
278 341 9.929180 CTCGGAAATGGATGTATCTAGAATTAA 57.071 33.333 0.00 0.00 0.00 1.40
302 365 8.571461 AAAATACGTCTAGATACATCCGTTTC 57.429 34.615 8.82 0.00 0.00 2.78
303 366 7.507733 AATACGTCTAGATACATCCGTTTCT 57.492 36.000 8.82 0.00 37.26 2.52
304 367 5.171147 ACGTCTAGATACATCCGTTTCTG 57.829 43.478 0.00 0.00 34.72 3.02
305 368 3.975670 CGTCTAGATACATCCGTTTCTGC 59.024 47.826 0.00 0.00 34.72 4.26
306 369 3.975670 GTCTAGATACATCCGTTTCTGCG 59.024 47.826 0.00 0.00 34.72 5.18
307 370 3.881089 TCTAGATACATCCGTTTCTGCGA 59.119 43.478 0.00 0.00 34.72 5.10
308 371 2.810650 AGATACATCCGTTTCTGCGAC 58.189 47.619 0.00 0.00 32.86 5.19
309 372 2.165641 AGATACATCCGTTTCTGCGACA 59.834 45.455 0.00 0.00 32.86 4.35
310 373 2.442212 TACATCCGTTTCTGCGACAA 57.558 45.000 0.00 0.00 0.00 3.18
311 374 1.148310 ACATCCGTTTCTGCGACAAG 58.852 50.000 0.00 0.00 0.00 3.16
312 375 1.148310 CATCCGTTTCTGCGACAAGT 58.852 50.000 0.00 0.00 0.00 3.16
313 376 2.288579 ACATCCGTTTCTGCGACAAGTA 60.289 45.455 0.00 0.00 0.00 2.24
314 377 2.512485 TCCGTTTCTGCGACAAGTAA 57.488 45.000 0.00 0.00 0.00 2.24
315 378 3.034721 TCCGTTTCTGCGACAAGTAAT 57.965 42.857 0.00 0.00 0.00 1.89
316 379 3.395639 TCCGTTTCTGCGACAAGTAATT 58.604 40.909 0.00 0.00 0.00 1.40
317 380 3.430895 TCCGTTTCTGCGACAAGTAATTC 59.569 43.478 0.00 0.00 0.00 2.17
318 381 3.424433 CCGTTTCTGCGACAAGTAATTCC 60.424 47.826 0.00 0.00 0.00 3.01
319 382 3.720920 CGTTTCTGCGACAAGTAATTCCG 60.721 47.826 0.00 0.00 0.00 4.30
320 383 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
321 384 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
322 385 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
323 386 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
324 387 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
325 388 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
326 389 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
327 390 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
328 391 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
329 392 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
330 393 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
331 394 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
332 395 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
333 396 2.083628 ATTCCGAACGGAGGGAGTAT 57.916 50.000 15.34 3.38 46.06 2.12
334 397 1.108776 TTCCGAACGGAGGGAGTATG 58.891 55.000 15.34 0.00 46.06 2.39
359 422 3.063997 GCTTCACAAGATAATGACACCCG 59.936 47.826 0.00 0.00 0.00 5.28
382 445 3.181447 TGGCATTCTGGGCAAAAATGAAA 60.181 39.130 0.00 0.00 40.73 2.69
388 451 7.649973 CATTCTGGGCAAAAATGAAAAATCAA 58.350 30.769 0.00 0.00 33.22 2.57
425 488 2.280628 CGCTACTGTTTGAAGGGATCC 58.719 52.381 1.92 1.92 0.00 3.36
589 687 1.133513 TGAAACCATGCCCACTTCTGT 60.134 47.619 0.00 0.00 0.00 3.41
601 699 5.880332 TGCCCACTTCTGTATTTTCATCTAC 59.120 40.000 0.00 0.00 0.00 2.59
602 700 6.116126 GCCCACTTCTGTATTTTCATCTACT 58.884 40.000 0.00 0.00 0.00 2.57
603 701 7.093068 TGCCCACTTCTGTATTTTCATCTACTA 60.093 37.037 0.00 0.00 0.00 1.82
604 702 7.934120 GCCCACTTCTGTATTTTCATCTACTAT 59.066 37.037 0.00 0.00 0.00 2.12
621 719 7.900782 TCTACTATAAAAGTGAGCCACAAAC 57.099 36.000 7.86 0.00 39.39 2.93
626 724 9.073475 ACTATAAAAGTGAGCCACAAACATAAA 57.927 29.630 7.86 0.00 36.93 1.40
627 725 9.341899 CTATAAAAGTGAGCCACAAACATAAAC 57.658 33.333 7.86 0.00 36.74 2.01
628 726 5.590530 AAAGTGAGCCACAAACATAAACA 57.409 34.783 7.86 0.00 36.74 2.83
629 727 5.789643 AAGTGAGCCACAAACATAAACAT 57.210 34.783 7.86 0.00 36.74 2.71
630 728 5.125100 AGTGAGCCACAAACATAAACATG 57.875 39.130 7.86 0.00 36.74 3.21
631 729 4.022068 AGTGAGCCACAAACATAAACATGG 60.022 41.667 0.00 0.00 36.74 3.66
633 731 1.991965 GCCACAAACATAAACATGGCG 59.008 47.619 0.00 0.00 42.88 5.69
634 732 2.609244 GCCACAAACATAAACATGGCGT 60.609 45.455 0.00 0.00 42.88 5.68
635 733 2.985809 CCACAAACATAAACATGGCGTG 59.014 45.455 4.87 4.87 0.00 5.34
638 736 4.742167 CACAAACATAAACATGGCGTGAAA 59.258 37.500 14.82 0.00 0.00 2.69
639 737 5.404968 CACAAACATAAACATGGCGTGAAAT 59.595 36.000 14.82 0.66 0.00 2.17
640 738 5.633182 ACAAACATAAACATGGCGTGAAATC 59.367 36.000 14.82 0.00 0.00 2.17
641 739 5.384063 AACATAAACATGGCGTGAAATCA 57.616 34.783 14.82 0.00 0.00 2.57
642 740 4.732784 ACATAAACATGGCGTGAAATCAC 58.267 39.130 14.82 3.43 43.15 3.06
673 771 7.589958 TTTTTGTAAGGAAATTGGTAGCTCA 57.410 32.000 0.00 0.00 0.00 4.26
674 772 6.569179 TTTGTAAGGAAATTGGTAGCTCAC 57.431 37.500 0.00 0.00 0.00 3.51
698 1678 2.029666 GCAGTGTGACGAGCCAGT 59.970 61.111 0.00 0.00 0.00 4.00
699 1679 1.289066 GCAGTGTGACGAGCCAGTA 59.711 57.895 0.00 0.00 0.00 2.74
772 2002 2.887568 GATGCAGCGGTCCGACTG 60.888 66.667 23.28 23.28 35.41 3.51
901 2544 1.123077 TATACAGGAGCAGGCACCAG 58.877 55.000 10.34 4.64 0.00 4.00
904 2547 3.699894 AGGAGCAGGCACCAGACG 61.700 66.667 10.34 0.00 0.00 4.18
1175 2818 3.984732 GGGCTTGTTCTGGGGGCT 61.985 66.667 0.00 0.00 0.00 5.19
1181 2824 0.914417 TTGTTCTGGGGGCTAGGGAG 60.914 60.000 0.00 0.00 0.00 4.30
1188 2831 4.208686 GGGCTAGGGAGTCGTGCG 62.209 72.222 0.00 0.00 0.00 5.34
1266 2910 2.742372 CTGCTGGCCGCGTAGTTT 60.742 61.111 4.92 0.00 43.27 2.66
1308 2952 3.822167 GTCGGGAATTAGGGTTTTTGACA 59.178 43.478 0.00 0.00 0.00 3.58
1309 2953 4.076394 TCGGGAATTAGGGTTTTTGACAG 58.924 43.478 0.00 0.00 0.00 3.51
1330 2974 4.021981 CAGGGGAGAAGAATGTTTGGTTTC 60.022 45.833 0.00 0.00 0.00 2.78
1341 2985 2.546368 TGTTTGGTTTCGATTCTCGTGG 59.454 45.455 0.00 0.00 41.35 4.94
1359 3003 2.557056 GTGGTCTACAGCGAGGCATATA 59.443 50.000 0.00 0.00 0.00 0.86
1408 3056 7.902087 TCGATTTGGGTGGAATTTTCTAATTT 58.098 30.769 0.00 0.00 34.16 1.82
1427 3075 0.396139 TTGGATGGATGGCTTCCTGC 60.396 55.000 19.03 11.13 45.68 4.85
1430 3078 0.473326 GATGGATGGCTTCCTGCTCT 59.527 55.000 19.03 0.93 45.68 4.09
1504 3152 3.574354 AAGGAGATGGCCAAGAAGATC 57.426 47.619 10.96 0.30 0.00 2.75
1507 3155 3.462579 AGGAGATGGCCAAGAAGATCAAT 59.537 43.478 10.96 0.00 0.00 2.57
1557 3205 2.170817 GTCCTCTGACCACCCCTTAATC 59.829 54.545 0.00 0.00 35.34 1.75
1593 3241 2.621998 AGGATGCTCAAACATATGCAGC 59.378 45.455 1.58 6.15 40.54 5.25
1645 3293 2.639839 AGTCTGATTGGTGGCTGTACTT 59.360 45.455 0.00 0.00 0.00 2.24
1674 3327 1.661112 GTTCTAAGTGCCTGTGCGATC 59.339 52.381 0.00 0.00 41.78 3.69
1691 3344 2.810400 CGATCCCACCTTGTTGTGTTCT 60.810 50.000 0.00 0.00 34.35 3.01
1721 3374 6.925165 AGCTCATTTCACGTTTGATTTGATTT 59.075 30.769 0.00 0.00 0.00 2.17
1798 3451 5.583457 TGTGTCAGATAAACAGATGATGCAG 59.417 40.000 0.00 0.00 0.00 4.41
1880 3533 5.511729 GCATAGAATTAGCGGTTTTGTTGTC 59.488 40.000 0.00 0.00 0.00 3.18
1886 3539 1.134175 AGCGGTTTTGTTGTCACCTTG 59.866 47.619 0.00 0.00 0.00 3.61
1900 3553 4.941263 TGTCACCTTGGTGCTTTATCATAC 59.059 41.667 14.49 5.44 0.00 2.39
2008 3661 5.048434 TGCCAAATATGTCATCAACGTCAAA 60.048 36.000 0.00 0.00 0.00 2.69
2014 3667 9.474920 AAATATGTCATCAACGTCAAACAAATT 57.525 25.926 0.00 0.00 0.00 1.82
2032 3685 3.855689 ATTGCAAAGGTATGTCAGCAC 57.144 42.857 1.71 0.00 0.00 4.40
2041 3694 3.519510 AGGTATGTCAGCACTGTACCATT 59.480 43.478 14.77 0.00 37.13 3.16
2046 3699 3.751175 TGTCAGCACTGTACCATTTTAGC 59.249 43.478 0.00 0.00 0.00 3.09
2085 3739 7.283807 TCTGGAGGTTGAATATTGATGATGTTG 59.716 37.037 0.00 0.00 0.00 3.33
2113 3770 2.427095 GGGGATATTGCAGTTTGTGGTC 59.573 50.000 0.00 0.00 0.00 4.02
2122 3779 0.763035 AGTTTGTGGTCGGCTTAGGT 59.237 50.000 0.00 0.00 0.00 3.08
2137 3794 3.827722 CTTAGGTGACAAAGTTTCCCCA 58.172 45.455 0.00 0.00 0.00 4.96
2181 3838 5.364446 TGAGAGTTGGGTAAGTTGTCTGTTA 59.636 40.000 0.00 0.00 0.00 2.41
2186 3843 5.416271 TGGGTAAGTTGTCTGTTATCTCC 57.584 43.478 0.00 0.00 0.00 3.71
2195 3852 7.324178 AGTTGTCTGTTATCTCCAATGAGTAC 58.676 38.462 0.00 0.00 39.75 2.73
2214 3871 7.629157 TGAGTACATAACATCTTCCATTTGGA 58.371 34.615 0.00 0.00 43.73 3.53
2262 3921 5.339177 TGTTATGCTTTGTGTCAACACTTG 58.661 37.500 13.94 5.82 46.55 3.16
2272 3931 3.871594 GTGTCAACACTTGCAGTTAGAGT 59.128 43.478 6.03 0.00 43.25 3.24
2278 3937 3.919216 CACTTGCAGTTAGAGTGTAGCT 58.081 45.455 7.23 0.00 36.81 3.32
2283 3970 5.661056 TGCAGTTAGAGTGTAGCTGTAAT 57.339 39.130 11.88 0.00 35.74 1.89
2324 4011 7.653767 ACGGAAATCTAGAGTTAAGTTGTTG 57.346 36.000 5.23 0.00 0.00 3.33
2457 4147 5.122512 GCTATCGCCTACTAGAAATGTGA 57.877 43.478 0.00 0.00 0.00 3.58
2458 4148 5.715070 GCTATCGCCTACTAGAAATGTGAT 58.285 41.667 0.00 2.53 0.00 3.06
2459 4149 6.159988 GCTATCGCCTACTAGAAATGTGATT 58.840 40.000 0.00 0.00 0.00 2.57
2460 4150 6.647067 GCTATCGCCTACTAGAAATGTGATTT 59.353 38.462 0.00 0.00 34.64 2.17
2461 4151 6.851222 ATCGCCTACTAGAAATGTGATTTG 57.149 37.500 0.00 0.00 31.47 2.32
2462 4152 5.730550 TCGCCTACTAGAAATGTGATTTGT 58.269 37.500 0.00 0.00 31.47 2.83
2463 4153 6.869695 TCGCCTACTAGAAATGTGATTTGTA 58.130 36.000 0.00 0.00 31.47 2.41
2464 4154 7.324935 TCGCCTACTAGAAATGTGATTTGTAA 58.675 34.615 0.00 0.00 31.47 2.41
2465 4155 7.277098 TCGCCTACTAGAAATGTGATTTGTAAC 59.723 37.037 0.00 0.00 31.47 2.50
2466 4156 7.277981 CGCCTACTAGAAATGTGATTTGTAACT 59.722 37.037 0.00 0.00 31.47 2.24
2467 4157 8.391106 GCCTACTAGAAATGTGATTTGTAACTG 58.609 37.037 0.00 0.00 31.47 3.16
2468 4158 8.883731 CCTACTAGAAATGTGATTTGTAACTGG 58.116 37.037 0.00 0.00 31.47 4.00
2469 4159 9.436957 CTACTAGAAATGTGATTTGTAACTGGT 57.563 33.333 0.00 0.00 31.47 4.00
2470 4160 8.099364 ACTAGAAATGTGATTTGTAACTGGTG 57.901 34.615 0.00 0.00 31.47 4.17
2471 4161 6.959639 AGAAATGTGATTTGTAACTGGTGT 57.040 33.333 0.00 0.00 31.47 4.16
2472 4162 7.346751 AGAAATGTGATTTGTAACTGGTGTT 57.653 32.000 0.00 0.00 34.98 3.32
2473 4163 8.458573 AGAAATGTGATTTGTAACTGGTGTTA 57.541 30.769 0.00 0.00 33.64 2.41
2474 4164 9.077885 AGAAATGTGATTTGTAACTGGTGTTAT 57.922 29.630 0.00 0.00 35.55 1.89
2475 4165 9.128107 GAAATGTGATTTGTAACTGGTGTTATG 57.872 33.333 0.00 0.00 35.55 1.90
2478 4252 8.090250 TGTGATTTGTAACTGGTGTTATGTAC 57.910 34.615 0.00 0.00 40.31 2.90
2493 4267 7.537306 GGTGTTATGTACTATTGTTGTGCTTTG 59.463 37.037 0.00 0.00 0.00 2.77
2498 4272 2.034558 ACTATTGTTGTGCTTTGCGCTT 59.965 40.909 9.73 0.00 40.03 4.68
2550 4324 6.146021 GGATCACCAAAGTTTGTTGCATAAAG 59.854 38.462 14.36 0.00 35.97 1.85
2649 4424 6.458342 GGGTTGATCGAAACAAATACCAGATC 60.458 42.308 9.38 0.00 35.07 2.75
2718 4493 3.751175 CAGTTGAAGAAAAGCCGGATGTA 59.249 43.478 5.05 0.00 0.00 2.29
2919 4694 2.612212 GACCGATGCATGTTTTATCCGT 59.388 45.455 2.46 0.00 0.00 4.69
2928 4703 4.814234 GCATGTTTTATCCGTGTGATAGGA 59.186 41.667 0.00 0.00 37.26 2.94
2940 4715 3.997021 GTGTGATAGGAAGTGAGTTGGTG 59.003 47.826 0.00 0.00 0.00 4.17
3027 4802 3.057033 AGGCATGCATTGTCTTCTTTGAC 60.057 43.478 21.36 0.00 36.73 3.18
3111 4886 1.089920 GCACCATGCTCGAGATTGTT 58.910 50.000 18.75 0.00 40.96 2.83
3162 4937 1.293062 ACATCAAGGTCCTCATGGCT 58.707 50.000 13.14 0.00 0.00 4.75
3196 4971 2.813226 TACATTGGACCCGGCACTGC 62.813 60.000 0.00 0.00 0.00 4.40
3282 5057 1.348064 TCTTCAAGATCCACACCCGT 58.652 50.000 0.00 0.00 0.00 5.28
3294 5069 2.742372 ACCCGTGCGATGAACTGC 60.742 61.111 0.00 0.00 0.00 4.40
3324 5099 3.741476 CGGTTTGAGCTGCTGGCC 61.741 66.667 7.01 0.00 43.05 5.36
3361 5136 5.499313 ACTCCACTGGTAAGAGTCTAGTAC 58.501 45.833 0.00 0.00 36.06 2.73
3383 5158 0.244721 TGGCATGACACGAGTCTCAG 59.755 55.000 14.15 5.27 45.20 3.35
3407 5182 1.062364 TCTGATCCCATCCATGCCTC 58.938 55.000 0.00 0.00 0.00 4.70
3445 5220 7.267857 CAACAGTCTTCTCATGTATCCATGTA 58.732 38.462 0.00 0.00 46.99 2.29
3451 5228 7.812191 GTCTTCTCATGTATCCATGTATGACTC 59.188 40.741 0.00 0.00 46.99 3.36
3486 5263 0.664767 GTGCTGATATCCGGAGCGTC 60.665 60.000 11.34 8.43 35.36 5.19
3507 5284 0.179045 GCACAGAGGCGGGAATGTAT 60.179 55.000 0.00 0.00 0.00 2.29
3573 5350 3.489355 TGATGCAGTCAACAAGGTCATT 58.511 40.909 0.00 0.00 32.78 2.57
3591 5368 6.492429 AGGTCATTAAGGGTTACCAAAAGTTC 59.508 38.462 2.98 0.00 40.13 3.01
3594 5371 7.013942 GTCATTAAGGGTTACCAAAAGTTCAGT 59.986 37.037 2.98 0.00 40.13 3.41
3600 5377 0.738389 ACCAAAAGTTCAGTGCCACG 59.262 50.000 0.00 0.00 0.00 4.94
3603 5380 1.034838 AAAAGTTCAGTGCCACGCCA 61.035 50.000 0.00 0.00 0.00 5.69
3609 5386 0.882927 TCAGTGCCACGCCAAAGTAC 60.883 55.000 0.00 0.00 0.00 2.73
3615 5392 0.802494 CCACGCCAAAGTACATGGTC 59.198 55.000 16.39 9.57 40.23 4.02
3653 5430 1.120530 CGTTAGCCCCCTGTGTATCT 58.879 55.000 0.00 0.00 0.00 1.98
3654 5431 1.485066 CGTTAGCCCCCTGTGTATCTT 59.515 52.381 0.00 0.00 0.00 2.40
3659 5438 0.748005 CCCCCTGTGTATCTTTGCCG 60.748 60.000 0.00 0.00 0.00 5.69
3745 5539 5.118990 ACTGCATCATATGTTACTGTGGAC 58.881 41.667 1.90 0.00 0.00 4.02
3747 5541 6.098266 ACTGCATCATATGTTACTGTGGACTA 59.902 38.462 1.90 0.00 0.00 2.59
3755 5549 3.374988 TGTTACTGTGGACTATACCGTCG 59.625 47.826 0.00 0.00 34.75 5.12
3853 5674 2.094258 AGTTGTTTGATGCATCGCGTAG 59.906 45.455 21.34 0.25 0.00 3.51
3874 5696 8.658609 GCGTAGGTTACTTTGATTGTATGTTAA 58.341 33.333 0.00 0.00 0.00 2.01
3891 5713 7.716560 TGTATGTTAATGTTGCTCTCATGCTAT 59.283 33.333 0.00 0.00 0.00 2.97
3962 5848 9.436957 TTCTGCTCTCGAAAAATAGTAAAGATT 57.563 29.630 0.00 0.00 0.00 2.40
3995 5882 8.907222 AAACTCTGATTTTTGTGGCAATAAAT 57.093 26.923 0.00 0.00 0.00 1.40
4008 5935 7.101700 TGTGGCAATAAATATTGTTGAATGCA 58.898 30.769 14.67 0.00 43.72 3.96
4009 5936 7.064371 TGTGGCAATAAATATTGTTGAATGCAC 59.936 33.333 14.67 9.38 43.72 4.57
4010 5937 7.278424 GTGGCAATAAATATTGTTGAATGCACT 59.722 33.333 14.67 0.00 43.72 4.40
4011 5938 7.492020 TGGCAATAAATATTGTTGAATGCACTC 59.508 33.333 14.67 0.00 43.72 3.51
4012 5939 7.492020 GGCAATAAATATTGTTGAATGCACTCA 59.508 33.333 14.67 0.00 43.72 3.41
4013 5940 8.871862 GCAATAAATATTGTTGAATGCACTCAA 58.128 29.630 6.47 6.47 43.72 3.02
4026 5955 4.581077 TGCACTCAATGTTTTATGCACA 57.419 36.364 0.00 0.00 38.11 4.57
4081 6012 6.500684 TTGCTTATTTCTGCTTAACTCCAG 57.499 37.500 0.00 0.00 0.00 3.86
4094 6025 5.447818 GCTTAACTCCAGGAATGTGATTTCG 60.448 44.000 0.00 0.00 0.00 3.46
4227 6168 0.451783 AATCTTTCGCGTTGCCATCC 59.548 50.000 5.77 0.00 0.00 3.51
4236 6177 1.930371 GCGTTGCCATCCACTTTGAAC 60.930 52.381 0.00 0.00 0.00 3.18
4237 6178 1.608590 CGTTGCCATCCACTTTGAACT 59.391 47.619 0.00 0.00 0.00 3.01
4339 6280 4.202326 ACCAATCGGTTCATAGGGATACAC 60.202 45.833 0.00 0.00 46.31 2.90
4346 6287 4.461198 GTTCATAGGGATACACAAAGGGG 58.539 47.826 0.00 0.00 39.74 4.79
4347 6288 3.743132 TCATAGGGATACACAAAGGGGT 58.257 45.455 0.00 0.00 39.74 4.95
4348 6289 3.714798 TCATAGGGATACACAAAGGGGTC 59.285 47.826 0.00 0.00 39.74 4.46
4349 6290 0.909623 AGGGATACACAAAGGGGTCG 59.090 55.000 0.00 0.00 39.74 4.79
4350 6291 0.746923 GGGATACACAAAGGGGTCGC 60.747 60.000 0.00 0.00 39.74 5.19
4389 6331 2.031420 GTGGCGACCTTGGTCTAAAAAC 60.031 50.000 16.60 5.54 0.00 2.43
4392 6334 1.802365 CGACCTTGGTCTAAAAACCCG 59.198 52.381 16.60 0.00 38.65 5.28
4472 6414 2.286950 GCAACTTGCAAACTGATGTCGA 60.287 45.455 8.97 0.00 44.26 4.20
4477 6419 0.798776 GCAAACTGATGTCGACCCTG 59.201 55.000 14.12 11.17 0.00 4.45
4480 6422 2.169832 AACTGATGTCGACCCTGTTG 57.830 50.000 20.88 8.44 0.00 3.33
4502 6444 7.608376 TGTTGGATTTCACGAATAATAGAACCA 59.392 33.333 0.00 0.00 0.00 3.67
4503 6445 8.621286 GTTGGATTTCACGAATAATAGAACCAT 58.379 33.333 0.00 0.00 0.00 3.55
4504 6446 9.839817 TTGGATTTCACGAATAATAGAACCATA 57.160 29.630 0.00 0.00 0.00 2.74
4505 6447 9.489084 TGGATTTCACGAATAATAGAACCATAG 57.511 33.333 0.00 0.00 0.00 2.23
4506 6448 8.936864 GGATTTCACGAATAATAGAACCATAGG 58.063 37.037 0.00 0.00 0.00 2.57
4507 6449 8.848474 ATTTCACGAATAATAGAACCATAGGG 57.152 34.615 0.00 0.00 41.29 3.53
4508 6450 7.606135 TTCACGAATAATAGAACCATAGGGA 57.394 36.000 0.00 0.00 38.05 4.20
4509 6451 6.989659 TCACGAATAATAGAACCATAGGGAC 58.010 40.000 0.00 0.00 38.05 4.46
4510 6452 5.862323 CACGAATAATAGAACCATAGGGACG 59.138 44.000 0.00 0.00 38.05 4.79
4511 6453 5.537674 ACGAATAATAGAACCATAGGGACGT 59.462 40.000 0.00 0.00 38.05 4.34
4512 6454 5.862323 CGAATAATAGAACCATAGGGACGTG 59.138 44.000 0.00 0.00 38.05 4.49
4513 6455 5.740290 ATAATAGAACCATAGGGACGTGG 57.260 43.478 0.00 0.00 43.01 4.94
4514 6456 2.832643 TAGAACCATAGGGACGTGGA 57.167 50.000 0.00 0.00 40.54 4.02
4515 6457 1.486211 AGAACCATAGGGACGTGGAG 58.514 55.000 0.00 0.00 40.54 3.86
4516 6458 1.192428 GAACCATAGGGACGTGGAGT 58.808 55.000 0.00 0.00 40.54 3.85
4517 6459 1.553704 GAACCATAGGGACGTGGAGTT 59.446 52.381 0.00 0.00 40.54 3.01
4518 6460 1.652947 ACCATAGGGACGTGGAGTTT 58.347 50.000 0.00 0.00 40.54 2.66
4519 6461 1.553704 ACCATAGGGACGTGGAGTTTC 59.446 52.381 0.00 0.00 40.54 2.78
4520 6462 1.831736 CCATAGGGACGTGGAGTTTCT 59.168 52.381 0.00 0.00 40.54 2.52
4521 6463 3.028850 CCATAGGGACGTGGAGTTTCTA 58.971 50.000 0.00 0.00 40.54 2.10
4522 6464 3.181478 CCATAGGGACGTGGAGTTTCTAC 60.181 52.174 0.00 0.00 40.54 2.59
4523 6465 2.005370 AGGGACGTGGAGTTTCTACA 57.995 50.000 0.00 0.00 0.00 2.74
4524 6466 1.617357 AGGGACGTGGAGTTTCTACAC 59.383 52.381 0.00 2.35 41.58 2.90
4525 6467 1.337541 GGGACGTGGAGTTTCTACACC 60.338 57.143 0.00 1.11 41.96 4.16
4526 6468 1.337541 GGACGTGGAGTTTCTACACCC 60.338 57.143 0.00 0.25 41.96 4.61
4527 6469 1.342174 GACGTGGAGTTTCTACACCCA 59.658 52.381 0.00 0.00 41.96 4.51
4528 6470 1.343465 ACGTGGAGTTTCTACACCCAG 59.657 52.381 6.55 0.00 41.96 4.45
4529 6471 1.337823 CGTGGAGTTTCTACACCCAGG 60.338 57.143 6.55 0.00 41.96 4.45
4530 6472 1.975680 GTGGAGTTTCTACACCCAGGA 59.024 52.381 1.03 0.00 39.27 3.86
4531 6473 2.028020 GTGGAGTTTCTACACCCAGGAG 60.028 54.545 1.03 0.00 39.27 3.69
4532 6474 1.066071 GGAGTTTCTACACCCAGGAGC 60.066 57.143 0.00 0.00 0.00 4.70
4533 6475 1.623811 GAGTTTCTACACCCAGGAGCA 59.376 52.381 0.00 0.00 0.00 4.26
4534 6476 2.038557 GAGTTTCTACACCCAGGAGCAA 59.961 50.000 0.00 0.00 0.00 3.91
4535 6477 2.441750 AGTTTCTACACCCAGGAGCAAA 59.558 45.455 0.00 0.00 0.00 3.68
4536 6478 3.074538 AGTTTCTACACCCAGGAGCAAAT 59.925 43.478 0.00 0.00 0.00 2.32
4537 6479 2.787473 TCTACACCCAGGAGCAAATG 57.213 50.000 0.00 0.00 0.00 2.32
4538 6480 1.098050 CTACACCCAGGAGCAAATGC 58.902 55.000 0.00 0.00 42.49 3.56
4539 6481 0.323360 TACACCCAGGAGCAAATGCC 60.323 55.000 0.94 0.00 43.38 4.40
4540 6482 2.037847 ACCCAGGAGCAAATGCCC 59.962 61.111 0.94 3.45 43.38 5.36
4541 6483 2.761213 CCCAGGAGCAAATGCCCC 60.761 66.667 0.94 0.00 43.38 5.80
4545 6487 2.037847 GGAGCAAATGCCCCTGGT 59.962 61.111 0.94 0.00 43.38 4.00
4546 6488 2.353610 GGAGCAAATGCCCCTGGTG 61.354 63.158 0.94 0.00 43.38 4.17
4547 6489 1.607467 GAGCAAATGCCCCTGGTGT 60.607 57.895 0.94 0.00 43.38 4.16
4548 6490 1.880819 GAGCAAATGCCCCTGGTGTG 61.881 60.000 0.94 0.00 43.38 3.82
4549 6491 1.907807 GCAAATGCCCCTGGTGTGA 60.908 57.895 0.00 0.00 34.31 3.58
4550 6492 1.470996 GCAAATGCCCCTGGTGTGAA 61.471 55.000 0.00 0.00 34.31 3.18
4551 6493 0.318120 CAAATGCCCCTGGTGTGAAC 59.682 55.000 0.00 0.00 0.00 3.18
4552 6494 0.105760 AAATGCCCCTGGTGTGAACA 60.106 50.000 0.00 0.00 0.00 3.18
4553 6495 0.540365 AATGCCCCTGGTGTGAACAG 60.540 55.000 0.00 0.00 35.74 3.16
4554 6496 1.719063 ATGCCCCTGGTGTGAACAGT 61.719 55.000 0.00 0.00 34.16 3.55
4555 6497 1.057275 TGCCCCTGGTGTGAACAGTA 61.057 55.000 0.00 0.00 34.16 2.74
4556 6498 0.109723 GCCCCTGGTGTGAACAGTAA 59.890 55.000 0.00 0.00 34.16 2.24
4557 6499 1.892209 CCCCTGGTGTGAACAGTAAC 58.108 55.000 0.00 0.00 34.16 2.50
4558 6500 1.142060 CCCCTGGTGTGAACAGTAACA 59.858 52.381 0.00 0.00 34.16 2.41
4559 6501 2.224769 CCCCTGGTGTGAACAGTAACAT 60.225 50.000 0.00 0.00 34.16 2.71
4560 6502 3.074412 CCCTGGTGTGAACAGTAACATC 58.926 50.000 0.00 0.00 34.16 3.06
4561 6503 3.495983 CCCTGGTGTGAACAGTAACATCA 60.496 47.826 2.97 2.97 35.09 3.07
4562 6504 4.133820 CCTGGTGTGAACAGTAACATCAA 58.866 43.478 4.30 0.00 36.99 2.57
4563 6505 4.578516 CCTGGTGTGAACAGTAACATCAAA 59.421 41.667 4.30 0.00 36.99 2.69
4564 6506 5.241506 CCTGGTGTGAACAGTAACATCAAAT 59.758 40.000 4.30 0.00 36.99 2.32
4565 6507 6.429692 CCTGGTGTGAACAGTAACATCAAATA 59.570 38.462 4.30 0.00 36.99 1.40
4566 6508 7.040755 CCTGGTGTGAACAGTAACATCAAATAA 60.041 37.037 4.30 0.00 36.99 1.40
4567 6509 8.226819 TGGTGTGAACAGTAACATCAAATAAA 57.773 30.769 0.65 0.00 34.55 1.40
4568 6510 8.855110 TGGTGTGAACAGTAACATCAAATAAAT 58.145 29.630 0.65 0.00 34.55 1.40
4569 6511 9.691362 GGTGTGAACAGTAACATCAAATAAATT 57.309 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 2.239907 AGATTCTTCCCACCTTACAGCC 59.760 50.000 0.00 0.00 0.00 4.85
71 72 7.035004 TGCAAAGACAATAAAATCCATGTAGC 58.965 34.615 0.00 0.00 0.00 3.58
80 81 7.761249 GGCTGATAACTGCAAAGACAATAAAAT 59.239 33.333 4.34 0.00 41.61 1.82
117 118 2.596338 TGGCGACTCACGGTCTCA 60.596 61.111 0.00 0.00 42.44 3.27
118 119 1.303799 TAGTGGCGACTCACGGTCTC 61.304 60.000 4.00 0.00 42.44 3.36
186 187 4.393680 GGTCGACCATGTATGCTACAAAAA 59.606 41.667 29.75 0.00 42.76 1.94
188 189 3.055747 TGGTCGACCATGTATGCTACAAA 60.056 43.478 33.23 5.20 42.76 2.83
190 191 2.104170 TGGTCGACCATGTATGCTACA 58.896 47.619 33.23 5.92 42.01 2.74
191 192 2.882927 TGGTCGACCATGTATGCTAC 57.117 50.000 33.23 3.01 42.01 3.58
198 199 8.773619 ATACAAGAGTAGAATGGTCGACCATGT 61.774 40.741 42.69 34.42 43.83 3.21
199 200 6.461648 ATACAAGAGTAGAATGGTCGACCATG 60.462 42.308 42.69 31.41 43.83 3.66
200 201 5.598830 ATACAAGAGTAGAATGGTCGACCAT 59.401 40.000 38.60 38.60 45.24 3.55
205 268 7.012515 AGAGTACATACAAGAGTAGAATGGTCG 59.987 40.741 0.00 0.00 32.86 4.79
219 282 4.768448 TCCAAACGGAGAGAGTACATACAA 59.232 41.667 0.00 0.00 0.00 2.41
226 289 6.014840 ACAAGTAATTCCAAACGGAGAGAGTA 60.015 38.462 0.00 0.00 32.88 2.59
227 290 5.221661 ACAAGTAATTCCAAACGGAGAGAGT 60.222 40.000 0.00 0.00 32.88 3.24
228 291 5.238583 ACAAGTAATTCCAAACGGAGAGAG 58.761 41.667 0.00 0.00 32.88 3.20
229 292 5.011738 AGACAAGTAATTCCAAACGGAGAGA 59.988 40.000 0.00 0.00 32.88 3.10
230 293 5.238583 AGACAAGTAATTCCAAACGGAGAG 58.761 41.667 0.00 0.00 32.88 3.20
231 294 5.223449 AGACAAGTAATTCCAAACGGAGA 57.777 39.130 0.00 0.00 32.88 3.71
232 295 4.091509 CGAGACAAGTAATTCCAAACGGAG 59.908 45.833 0.00 0.00 32.88 4.63
233 296 3.991773 CGAGACAAGTAATTCCAAACGGA 59.008 43.478 0.00 0.00 0.00 4.69
234 297 3.124636 CCGAGACAAGTAATTCCAAACGG 59.875 47.826 0.00 0.00 0.00 4.44
235 298 3.991773 TCCGAGACAAGTAATTCCAAACG 59.008 43.478 0.00 0.00 0.00 3.60
236 299 5.934935 TTCCGAGACAAGTAATTCCAAAC 57.065 39.130 0.00 0.00 0.00 2.93
237 300 6.072175 CCATTTCCGAGACAAGTAATTCCAAA 60.072 38.462 0.00 0.00 0.00 3.28
238 301 5.414454 CCATTTCCGAGACAAGTAATTCCAA 59.586 40.000 0.00 0.00 0.00 3.53
239 302 4.941263 CCATTTCCGAGACAAGTAATTCCA 59.059 41.667 0.00 0.00 0.00 3.53
240 303 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
241 304 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
242 305 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
243 306 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
244 307 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
245 308 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
246 309 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
247 310 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
248 311 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
249 312 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
250 313 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
251 314 7.782897 ATTCTAGATACATCCATTTCCGAGA 57.217 36.000 0.00 0.00 0.00 4.04
252 315 9.929180 TTAATTCTAGATACATCCATTTCCGAG 57.071 33.333 0.00 0.00 0.00 4.63
276 339 9.669353 GAAACGGATGTATCTAGACGTATTTTA 57.331 33.333 0.00 0.00 33.85 1.52
277 340 8.411683 AGAAACGGATGTATCTAGACGTATTTT 58.588 33.333 0.00 0.00 33.85 1.82
278 341 7.861372 CAGAAACGGATGTATCTAGACGTATTT 59.139 37.037 0.00 0.00 33.85 1.40
279 342 7.361127 CAGAAACGGATGTATCTAGACGTATT 58.639 38.462 0.00 0.00 33.85 1.89
280 343 6.568081 GCAGAAACGGATGTATCTAGACGTAT 60.568 42.308 0.00 0.00 33.85 3.06
281 344 5.277683 GCAGAAACGGATGTATCTAGACGTA 60.278 44.000 0.00 0.00 33.85 3.57
282 345 4.497674 GCAGAAACGGATGTATCTAGACGT 60.498 45.833 0.00 0.00 35.95 4.34
283 346 3.975670 GCAGAAACGGATGTATCTAGACG 59.024 47.826 0.00 0.00 0.00 4.18
284 347 3.975670 CGCAGAAACGGATGTATCTAGAC 59.024 47.826 0.00 0.00 0.00 2.59
285 348 3.881089 TCGCAGAAACGGATGTATCTAGA 59.119 43.478 0.00 0.00 0.00 2.43
286 349 3.975670 GTCGCAGAAACGGATGTATCTAG 59.024 47.826 0.00 0.00 39.69 2.43
287 350 3.379057 TGTCGCAGAAACGGATGTATCTA 59.621 43.478 0.00 0.00 39.69 1.98
288 351 2.165641 TGTCGCAGAAACGGATGTATCT 59.834 45.455 0.00 0.00 39.69 1.98
289 352 2.536365 TGTCGCAGAAACGGATGTATC 58.464 47.619 0.00 0.00 39.69 2.24
290 353 2.665649 TGTCGCAGAAACGGATGTAT 57.334 45.000 0.00 0.00 39.69 2.29
291 354 2.288579 ACTTGTCGCAGAAACGGATGTA 60.289 45.455 0.00 0.00 39.69 2.29
292 355 1.148310 CTTGTCGCAGAAACGGATGT 58.852 50.000 0.00 0.00 39.69 3.06
293 356 1.148310 ACTTGTCGCAGAAACGGATG 58.852 50.000 0.00 0.00 39.69 3.51
294 357 2.736144 TACTTGTCGCAGAAACGGAT 57.264 45.000 0.00 0.00 39.69 4.18
295 358 2.512485 TTACTTGTCGCAGAAACGGA 57.488 45.000 0.00 0.00 39.69 4.69
296 359 3.424433 GGAATTACTTGTCGCAGAAACGG 60.424 47.826 0.00 0.00 39.69 4.44
297 360 3.720920 CGGAATTACTTGTCGCAGAAACG 60.721 47.826 0.00 0.00 39.69 3.60
298 361 3.430895 TCGGAATTACTTGTCGCAGAAAC 59.569 43.478 0.00 0.00 39.69 2.78
299 362 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
300 363 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
301 364 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
302 365 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
303 366 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
304 367 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
305 368 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
306 369 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
307 370 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
308 371 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
309 372 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
310 373 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
311 374 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
312 375 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
313 376 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
314 377 1.687123 CATACTCCCTCCGTTCGGAAT 59.313 52.381 14.79 2.14 33.41 3.01
315 378 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
316 379 0.256752 TCATACTCCCTCCGTTCGGA 59.743 55.000 13.34 13.34 0.00 4.55
317 380 1.067212 CTTCATACTCCCTCCGTTCGG 59.933 57.143 4.74 4.74 0.00 4.30
318 381 1.536284 GCTTCATACTCCCTCCGTTCG 60.536 57.143 0.00 0.00 0.00 3.95
319 382 1.757699 AGCTTCATACTCCCTCCGTTC 59.242 52.381 0.00 0.00 0.00 3.95
320 383 1.867363 AGCTTCATACTCCCTCCGTT 58.133 50.000 0.00 0.00 0.00 4.44
321 384 1.757699 GAAGCTTCATACTCCCTCCGT 59.242 52.381 21.67 0.00 0.00 4.69
322 385 1.757118 TGAAGCTTCATACTCCCTCCG 59.243 52.381 25.16 0.00 31.01 4.63
323 386 2.501723 TGTGAAGCTTCATACTCCCTCC 59.498 50.000 30.65 15.37 39.73 4.30
324 387 3.895232 TGTGAAGCTTCATACTCCCTC 57.105 47.619 30.65 16.05 39.73 4.30
325 388 3.840666 TCTTGTGAAGCTTCATACTCCCT 59.159 43.478 30.65 0.00 39.73 4.20
326 389 4.207891 TCTTGTGAAGCTTCATACTCCC 57.792 45.455 30.65 17.44 39.73 4.30
327 390 7.712639 TCATTATCTTGTGAAGCTTCATACTCC 59.287 37.037 30.65 18.13 39.73 3.85
328 391 8.547069 GTCATTATCTTGTGAAGCTTCATACTC 58.453 37.037 30.65 18.49 39.73 2.59
329 392 8.043113 TGTCATTATCTTGTGAAGCTTCATACT 58.957 33.333 30.65 17.16 39.73 2.12
330 393 8.119226 GTGTCATTATCTTGTGAAGCTTCATAC 58.881 37.037 30.65 19.53 39.73 2.39
331 394 7.280876 GGTGTCATTATCTTGTGAAGCTTCATA 59.719 37.037 30.65 25.61 39.73 2.15
332 395 6.094603 GGTGTCATTATCTTGTGAAGCTTCAT 59.905 38.462 30.65 17.42 39.73 2.57
333 396 5.412594 GGTGTCATTATCTTGTGAAGCTTCA 59.587 40.000 25.16 25.16 34.20 3.02
334 397 5.163713 GGGTGTCATTATCTTGTGAAGCTTC 60.164 44.000 19.89 19.89 0.00 3.86
359 422 2.078392 CATTTTTGCCCAGAATGCCAC 58.922 47.619 0.00 0.00 31.97 5.01
382 445 8.034804 AGCGGTTTTTGAATATAGCTTTGATTT 58.965 29.630 0.00 0.00 0.00 2.17
388 451 6.598064 ACAGTAGCGGTTTTTGAATATAGCTT 59.402 34.615 0.00 0.00 35.23 3.74
405 468 2.093447 AGGATCCCTTCAAACAGTAGCG 60.093 50.000 8.55 0.00 0.00 4.26
425 488 7.283354 GGGGTATTCTCCAGTGAAGAAAATTAG 59.717 40.741 0.00 0.00 0.00 1.73
543 641 5.049828 CGCACTCACATGAATAGTGGATTA 58.950 41.667 20.40 0.00 40.76 1.75
557 655 0.817229 TGGTTTCATGCGCACTCACA 60.817 50.000 14.90 4.54 0.00 3.58
571 669 2.969821 TACAGAAGTGGGCATGGTTT 57.030 45.000 0.00 0.00 0.00 3.27
601 699 9.341899 GTTTATGTTTGTGGCTCACTTTTATAG 57.658 33.333 6.83 0.00 35.11 1.31
602 700 8.851145 TGTTTATGTTTGTGGCTCACTTTTATA 58.149 29.630 6.83 0.44 35.11 0.98
603 701 7.721402 TGTTTATGTTTGTGGCTCACTTTTAT 58.279 30.769 6.83 1.16 35.11 1.40
604 702 7.101652 TGTTTATGTTTGTGGCTCACTTTTA 57.898 32.000 6.83 0.00 35.11 1.52
613 711 1.991965 CGCCATGTTTATGTTTGTGGC 59.008 47.619 4.19 4.19 46.47 5.01
649 747 7.430441 GTGAGCTACCAATTTCCTTACAAAAA 58.570 34.615 0.00 0.00 0.00 1.94
666 764 1.518133 CTGCGCTGAGGTGAGCTAC 60.518 63.158 9.73 0.00 36.77 3.58
667 765 1.979155 ACTGCGCTGAGGTGAGCTA 60.979 57.895 21.92 0.00 36.77 3.32
668 766 3.309506 ACTGCGCTGAGGTGAGCT 61.310 61.111 21.92 0.00 36.77 4.09
669 767 3.117171 CACTGCGCTGAGGTGAGC 61.117 66.667 21.92 0.00 33.32 4.26
670 768 2.025969 CACACTGCGCTGAGGTGAG 61.026 63.158 26.47 16.85 35.28 3.51
672 770 2.029518 TCACACTGCGCTGAGGTG 59.970 61.111 25.45 25.45 37.05 4.00
673 771 2.029666 GTCACACTGCGCTGAGGT 59.970 61.111 21.92 14.88 0.00 3.85
674 772 3.108289 CGTCACACTGCGCTGAGG 61.108 66.667 21.92 11.71 0.00 3.86
675 773 2.050077 TCGTCACACTGCGCTGAG 60.050 61.111 21.92 15.69 0.00 3.35
676 774 2.050077 CTCGTCACACTGCGCTGA 60.050 61.111 21.92 7.18 0.00 4.26
677 775 3.771491 GCTCGTCACACTGCGCTG 61.771 66.667 13.23 13.23 0.00 5.18
695 1675 2.422479 TCGAGTTCCGGATGACTTACTG 59.578 50.000 4.15 0.18 39.14 2.74
698 1678 5.769367 CATATTCGAGTTCCGGATGACTTA 58.231 41.667 4.15 0.00 37.04 2.24
699 1679 4.621991 CATATTCGAGTTCCGGATGACTT 58.378 43.478 4.15 0.00 37.04 3.01
772 2002 0.817654 CTCGGAAATTTTGGCCTCCC 59.182 55.000 3.32 0.00 0.00 4.30
845 2488 3.640967 CCTTTCTCCTCCGATCAGAATCT 59.359 47.826 0.00 0.00 0.00 2.40
848 2491 3.101643 TCCTTTCTCCTCCGATCAGAA 57.898 47.619 0.00 0.00 0.00 3.02
851 2494 4.324267 GTTTTTCCTTTCTCCTCCGATCA 58.676 43.478 0.00 0.00 0.00 2.92
901 2544 0.248296 GAGCGAGATGTGTCTCCGTC 60.248 60.000 0.00 0.00 46.67 4.79
904 2547 1.587613 GCGAGCGAGATGTGTCTCC 60.588 63.158 0.00 0.00 46.67 3.71
980 2623 3.465403 CTCCTGCACCTCCTCCGG 61.465 72.222 0.00 0.00 0.00 5.14
981 2624 4.154347 GCTCCTGCACCTCCTCCG 62.154 72.222 0.00 0.00 39.41 4.63
982 2625 3.791586 GGCTCCTGCACCTCCTCC 61.792 72.222 0.00 0.00 41.91 4.30
1168 2811 3.680196 ACGACTCCCTAGCCCCCA 61.680 66.667 0.00 0.00 0.00 4.96
1188 2831 0.456995 GATGGCTAGATCTACGCGGC 60.457 60.000 12.47 10.93 0.00 6.53
1219 2862 4.272504 CCAAATACACACGACAACAGAAGT 59.727 41.667 0.00 0.00 0.00 3.01
1260 2904 5.837191 CACAAATCGTAACGACACAAACTAC 59.163 40.000 0.00 0.00 39.18 2.73
1266 2910 1.190543 CGCACAAATCGTAACGACACA 59.809 47.619 0.00 0.00 39.18 3.72
1308 2952 3.903530 AACCAAACATTCTTCTCCCCT 57.096 42.857 0.00 0.00 0.00 4.79
1309 2953 3.057526 CGAAACCAAACATTCTTCTCCCC 60.058 47.826 0.00 0.00 0.00 4.81
1341 2985 2.414293 CGGTATATGCCTCGCTGTAGAC 60.414 54.545 8.32 0.00 0.00 2.59
1359 3003 0.311790 CTGCAATTCAGCAACACGGT 59.688 50.000 0.00 0.00 45.13 4.83
1427 3075 1.077429 GCCCAAGCCCCTGTAAGAG 60.077 63.158 0.00 0.00 34.07 2.85
1531 3179 0.036010 GGGTGGTCAGAGGACACATG 60.036 60.000 0.00 0.00 46.17 3.21
1557 3205 2.255406 CATCCTGATCCTAGACCCAGG 58.745 57.143 14.35 14.35 45.63 4.45
1563 3211 4.033009 TGTTTGAGCATCCTGATCCTAGA 58.967 43.478 0.00 0.00 30.48 2.43
1571 3219 3.550233 GCTGCATATGTTTGAGCATCCTG 60.550 47.826 4.29 0.00 36.28 3.86
1593 3241 1.815003 GGTGAGAACTTGGGAATGCAG 59.185 52.381 0.00 0.00 0.00 4.41
1600 3248 2.362077 CCAAAACTGGTGAGAACTTGGG 59.638 50.000 0.00 0.00 0.00 4.12
1645 3293 6.108687 CACAGGCACTTAGAACTGATAATCA 58.891 40.000 8.82 0.00 34.60 2.57
1674 3327 4.021102 AGATAGAACACAACAAGGTGGG 57.979 45.455 0.00 0.00 43.08 4.61
1691 3344 8.390354 CAAATCAAACGTGAAATGAGCTAGATA 58.610 33.333 0.00 0.00 37.30 1.98
1721 3374 5.835819 CAGTATCAGACTCCTTTATCCCTGA 59.164 44.000 0.00 0.00 35.64 3.86
1827 3480 2.505819 AGAAGGTTAAGGCGGACATCAT 59.494 45.455 0.00 0.00 0.00 2.45
1886 3539 3.477530 GTGGAGGGTATGATAAAGCACC 58.522 50.000 0.00 0.00 0.00 5.01
1900 3553 4.141801 TGACTATTAATTCACCGTGGAGGG 60.142 45.833 0.00 0.00 46.96 4.30
1935 3588 1.687494 GCATCGAGCGACCTTCACAC 61.687 60.000 0.00 0.00 0.00 3.82
2008 3661 4.039004 TGCTGACATACCTTTGCAATTTGT 59.961 37.500 0.00 0.00 0.00 2.83
2014 3667 2.153645 CAGTGCTGACATACCTTTGCA 58.846 47.619 0.00 0.00 0.00 4.08
2041 3694 6.466326 CCTCCAGAAGATATGATTGGGCTAAA 60.466 42.308 0.00 0.00 0.00 1.85
2046 3699 4.989875 ACCTCCAGAAGATATGATTGGG 57.010 45.455 0.00 0.00 0.00 4.12
2085 3739 5.118286 CAAACTGCAATATCCCCCAAAATC 58.882 41.667 0.00 0.00 0.00 2.17
2113 3770 2.225727 GGAAACTTTGTCACCTAAGCCG 59.774 50.000 0.00 0.00 0.00 5.52
2137 3794 5.835819 TCTCATTCCTTCCTCGATATCAGTT 59.164 40.000 3.12 0.00 0.00 3.16
2181 3838 8.153550 GGAAGATGTTATGTACTCATTGGAGAT 58.846 37.037 0.00 0.00 44.26 2.75
2186 3843 9.726232 CAAATGGAAGATGTTATGTACTCATTG 57.274 33.333 0.00 0.00 35.70 2.82
2262 3921 4.806247 CCATTACAGCTACACTCTAACTGC 59.194 45.833 0.00 0.00 31.46 4.40
2272 3931 2.418197 GGAGTTCGCCATTACAGCTACA 60.418 50.000 0.00 0.00 0.00 2.74
2275 3934 0.905357 AGGAGTTCGCCATTACAGCT 59.095 50.000 0.00 0.00 0.00 4.24
2276 3935 1.739067 AAGGAGTTCGCCATTACAGC 58.261 50.000 0.00 0.00 0.00 4.40
2277 3936 4.766404 AAAAAGGAGTTCGCCATTACAG 57.234 40.909 0.00 0.00 0.00 2.74
2278 3937 5.334260 CGTTAAAAAGGAGTTCGCCATTACA 60.334 40.000 0.00 0.00 0.00 2.41
2283 3970 1.874872 CCGTTAAAAAGGAGTTCGCCA 59.125 47.619 0.00 0.00 0.00 5.69
2338 4025 2.878406 GTGGCTTAGCACTCAAAAGTCA 59.122 45.455 6.53 0.00 32.72 3.41
2339 4026 2.878406 TGTGGCTTAGCACTCAAAAGTC 59.122 45.455 6.53 0.00 31.71 3.01
2340 4027 2.930950 TGTGGCTTAGCACTCAAAAGT 58.069 42.857 6.53 0.00 35.60 2.66
2341 4028 3.503363 TGATGTGGCTTAGCACTCAAAAG 59.497 43.478 6.53 0.00 0.00 2.27
2342 4029 3.253188 GTGATGTGGCTTAGCACTCAAAA 59.747 43.478 6.53 0.00 0.00 2.44
2343 4030 2.813754 GTGATGTGGCTTAGCACTCAAA 59.186 45.455 6.53 0.00 0.00 2.69
2344 4031 2.038952 AGTGATGTGGCTTAGCACTCAA 59.961 45.455 6.53 0.00 35.02 3.02
2378 4065 3.263369 TTGGAAGTAGTACCCAGTCCA 57.737 47.619 7.99 7.99 33.39 4.02
2450 4140 8.637986 ACATAACACCAGTTACAAATCACATTT 58.362 29.630 0.00 0.00 42.60 2.32
2452 4142 7.759489 ACATAACACCAGTTACAAATCACAT 57.241 32.000 0.00 0.00 42.60 3.21
2453 4143 7.934665 AGTACATAACACCAGTTACAAATCACA 59.065 33.333 0.00 0.00 42.60 3.58
2454 4144 8.319143 AGTACATAACACCAGTTACAAATCAC 57.681 34.615 0.00 0.00 42.60 3.06
2458 4148 9.781633 ACAATAGTACATAACACCAGTTACAAA 57.218 29.630 0.00 0.00 42.60 2.83
2459 4149 9.781633 AACAATAGTACATAACACCAGTTACAA 57.218 29.630 0.00 0.00 42.60 2.41
2460 4150 9.210329 CAACAATAGTACATAACACCAGTTACA 57.790 33.333 0.00 0.00 42.60 2.41
2461 4151 9.211485 ACAACAATAGTACATAACACCAGTTAC 57.789 33.333 0.00 0.00 42.60 2.50
2462 4152 9.210329 CACAACAATAGTACATAACACCAGTTA 57.790 33.333 0.00 0.00 43.83 2.24
2463 4153 7.308348 GCACAACAATAGTACATAACACCAGTT 60.308 37.037 0.00 0.00 41.74 3.16
2464 4154 6.148811 GCACAACAATAGTACATAACACCAGT 59.851 38.462 0.00 0.00 0.00 4.00
2465 4155 6.371548 AGCACAACAATAGTACATAACACCAG 59.628 38.462 0.00 0.00 0.00 4.00
2466 4156 6.234920 AGCACAACAATAGTACATAACACCA 58.765 36.000 0.00 0.00 0.00 4.17
2467 4157 6.737254 AGCACAACAATAGTACATAACACC 57.263 37.500 0.00 0.00 0.00 4.16
2468 4158 7.060633 GCAAAGCACAACAATAGTACATAACAC 59.939 37.037 0.00 0.00 0.00 3.32
2469 4159 7.081349 GCAAAGCACAACAATAGTACATAACA 58.919 34.615 0.00 0.00 0.00 2.41
2470 4160 6.248420 CGCAAAGCACAACAATAGTACATAAC 59.752 38.462 0.00 0.00 0.00 1.89
2471 4161 6.310960 CGCAAAGCACAACAATAGTACATAA 58.689 36.000 0.00 0.00 0.00 1.90
2472 4162 5.863898 CGCAAAGCACAACAATAGTACATA 58.136 37.500 0.00 0.00 0.00 2.29
2473 4163 4.722194 CGCAAAGCACAACAATAGTACAT 58.278 39.130 0.00 0.00 0.00 2.29
2474 4164 4.140518 CGCAAAGCACAACAATAGTACA 57.859 40.909 0.00 0.00 0.00 2.90
2550 4324 7.308435 AGAACAAGTAAAGCACAATAAGATGC 58.692 34.615 0.00 0.00 42.39 3.91
2595 4370 9.770097 CATAATACACAGGAGTAGAATCAACAT 57.230 33.333 0.00 0.00 0.00 2.71
2596 4371 7.710907 GCATAATACACAGGAGTAGAATCAACA 59.289 37.037 0.00 0.00 0.00 3.33
2649 4424 1.079197 GGGCGGCAAAGGAATTTGG 60.079 57.895 12.47 0.00 32.78 3.28
2919 4694 3.557054 GCACCAACTCACTTCCTATCACA 60.557 47.826 0.00 0.00 0.00 3.58
2928 4703 2.717639 ACTTCTGCACCAACTCACTT 57.282 45.000 0.00 0.00 0.00 3.16
2940 4715 2.749621 CCCTTCACCAACATACTTCTGC 59.250 50.000 0.00 0.00 0.00 4.26
3027 4802 0.452987 CACCAATGGCATCAACCTCG 59.547 55.000 0.00 0.00 0.00 4.63
3111 4886 3.904800 TCAAACCCATCGAGCTGATTA 57.095 42.857 0.00 0.00 34.13 1.75
3162 4937 3.371487 CCAATGTATCAGGCCTGTTGGTA 60.371 47.826 30.62 16.56 31.19 3.25
3282 5057 3.181290 CGCTCGCAGTTCATCGCA 61.181 61.111 0.00 0.00 0.00 5.10
3324 5099 4.785453 GAGTTGGGGCAGAGGCGG 62.785 72.222 0.00 0.00 42.47 6.13
3361 5136 0.529833 AGACTCGTGTCATGCCAGAG 59.470 55.000 18.92 0.00 45.20 3.35
3383 5158 3.280295 GCATGGATGGGATCAGATCATC 58.720 50.000 12.66 7.95 37.23 2.92
3399 5174 0.391528 TCATGACACACGAGGCATGG 60.392 55.000 18.13 5.32 38.82 3.66
3407 5182 1.193203 GACTGTTGCTCATGACACACG 59.807 52.381 0.00 0.00 0.00 4.49
3445 5220 2.615447 CTGTTGCAACACACAGAGTCAT 59.385 45.455 27.96 0.00 34.70 3.06
3451 5228 3.628005 CACCTGTTGCAACACACAG 57.372 52.632 27.96 17.88 34.70 3.66
3486 5263 2.110967 CATTCCCGCCTCTGTGCAG 61.111 63.158 0.00 0.00 0.00 4.41
3558 5335 4.724279 ACCCTTAATGACCTTGTTGACT 57.276 40.909 0.00 0.00 0.00 3.41
3573 5350 4.581409 GCACTGAACTTTTGGTAACCCTTA 59.419 41.667 0.00 0.00 0.00 2.69
3591 5368 1.163420 TGTACTTTGGCGTGGCACTG 61.163 55.000 16.72 10.39 0.00 3.66
3594 5371 1.240641 CCATGTACTTTGGCGTGGCA 61.241 55.000 2.99 0.00 35.33 4.92
3600 5377 7.723324 TCTAGTTATAGACCATGTACTTTGGC 58.277 38.462 13.41 7.97 37.81 4.52
3609 5386 7.414651 CGTCAGGCTATCTAGTTATAGACCATG 60.415 44.444 1.52 0.00 40.84 3.66
3615 5392 7.414319 GGCTAACGTCAGGCTATCTAGTTATAG 60.414 44.444 4.72 0.00 38.06 1.31
3659 5438 1.227002 CGTAGAAGAAGGCCCGAGC 60.227 63.158 0.00 0.00 38.76 5.03
3745 5539 6.395629 ACATTCCAATATTCCGACGGTATAG 58.604 40.000 14.79 3.50 0.00 1.31
3747 5541 5.221561 TGACATTCCAATATTCCGACGGTAT 60.222 40.000 14.79 12.73 0.00 2.73
3755 5549 7.712205 CCTTCCATTTTGACATTCCAATATTCC 59.288 37.037 0.00 0.00 0.00 3.01
3874 5696 5.539574 AGACTCTATAGCATGAGAGCAACAT 59.460 40.000 8.64 0.00 42.56 2.71
3891 5713 2.099263 GCATCACGGCACTAAGACTCTA 59.901 50.000 0.00 0.00 0.00 2.43
3995 5882 9.926158 ATAAAACATTGAGTGCATTCAACAATA 57.074 25.926 24.81 14.35 39.68 1.90
4061 5990 7.337942 ACATTCCTGGAGTTAAGCAGAAATAAG 59.662 37.037 0.00 0.00 0.00 1.73
4072 6001 5.556915 ACGAAATCACATTCCTGGAGTTAA 58.443 37.500 0.00 0.00 0.00 2.01
4094 6025 1.268488 TGTGTGCAAATGCTTCGTGAC 60.268 47.619 6.97 0.00 42.66 3.67
4202 6143 2.415512 GGCAACGCGAAAGATTTCTAGT 59.584 45.455 15.93 1.32 35.07 2.57
4227 6168 2.929398 GTTGGTTGCCAAGTTCAAAGTG 59.071 45.455 0.22 0.00 44.82 3.16
4236 6177 1.108727 TGCTCTGGTTGGTTGCCAAG 61.109 55.000 0.22 0.00 44.82 3.61
4237 6178 0.685785 TTGCTCTGGTTGGTTGCCAA 60.686 50.000 0.00 0.00 41.69 4.52
4283 6224 1.289066 GGCCTTCCCGCTCAAAAAC 59.711 57.895 0.00 0.00 0.00 2.43
4284 6225 0.757188 TTGGCCTTCCCGCTCAAAAA 60.757 50.000 3.32 0.00 35.87 1.94
4285 6226 1.152652 TTGGCCTTCCCGCTCAAAA 60.153 52.632 3.32 0.00 35.87 2.44
4287 6228 2.282180 GTTGGCCTTCCCGCTCAA 60.282 61.111 3.32 0.00 35.87 3.02
4288 6229 2.351924 AAAGTTGGCCTTCCCGCTCA 62.352 55.000 3.32 0.00 35.87 4.26
4289 6230 1.179174 AAAAGTTGGCCTTCCCGCTC 61.179 55.000 3.32 0.00 35.87 5.03
4290 6231 0.759060 AAAAAGTTGGCCTTCCCGCT 60.759 50.000 3.32 0.00 35.87 5.52
4291 6232 1.745890 AAAAAGTTGGCCTTCCCGC 59.254 52.632 3.32 0.00 35.87 6.13
4339 6280 4.697756 TGCTCCGCGACCCCTTTG 62.698 66.667 8.23 0.00 0.00 2.77
4346 6287 2.886124 GGCTAAGTGCTCCGCGAC 60.886 66.667 8.23 0.00 42.39 5.19
4347 6288 3.378602 TGGCTAAGTGCTCCGCGA 61.379 61.111 8.23 0.00 42.39 5.87
4348 6289 3.188786 GTGGCTAAGTGCTCCGCG 61.189 66.667 0.00 0.00 42.39 6.46
4349 6290 1.639298 CTTGTGGCTAAGTGCTCCGC 61.639 60.000 0.00 0.00 42.39 5.54
4350 6291 0.320771 ACTTGTGGCTAAGTGCTCCG 60.321 55.000 6.87 0.00 39.33 4.63
4377 6319 6.049790 CCAAATTTTCGGGTTTTTAGACCAA 58.950 36.000 0.00 0.00 41.65 3.67
4409 6351 2.160822 CGAGGAATTCGGATGCTCAT 57.839 50.000 0.00 0.00 45.54 2.90
4410 6352 3.667448 CGAGGAATTCGGATGCTCA 57.333 52.632 0.00 0.00 45.54 4.26
4428 6370 5.455392 CGATTTCATTCATGAAGGTATGGC 58.545 41.667 18.78 6.39 46.34 4.40
4472 6414 2.649531 TTCGTGAAATCCAACAGGGT 57.350 45.000 0.00 0.00 38.11 4.34
4477 6419 7.981142 TGGTTCTATTATTCGTGAAATCCAAC 58.019 34.615 0.00 0.00 0.00 3.77
4480 6422 8.936864 CCTATGGTTCTATTATTCGTGAAATCC 58.063 37.037 0.00 0.00 0.00 3.01
4502 6444 3.446516 GTGTAGAAACTCCACGTCCCTAT 59.553 47.826 0.00 0.00 0.00 2.57
4503 6445 2.821969 GTGTAGAAACTCCACGTCCCTA 59.178 50.000 0.00 0.00 0.00 3.53
4504 6446 1.617357 GTGTAGAAACTCCACGTCCCT 59.383 52.381 0.00 0.00 0.00 4.20
4505 6447 1.337541 GGTGTAGAAACTCCACGTCCC 60.338 57.143 0.00 0.00 38.81 4.46
4506 6448 1.337541 GGGTGTAGAAACTCCACGTCC 60.338 57.143 0.00 0.00 40.41 4.79
4507 6449 1.342174 TGGGTGTAGAAACTCCACGTC 59.658 52.381 0.00 0.00 40.41 4.34
4508 6450 1.343465 CTGGGTGTAGAAACTCCACGT 59.657 52.381 0.00 0.00 40.41 4.49
4509 6451 1.337823 CCTGGGTGTAGAAACTCCACG 60.338 57.143 0.00 0.00 40.41 4.94
4510 6452 1.975680 TCCTGGGTGTAGAAACTCCAC 59.024 52.381 0.00 0.00 40.41 4.02
4511 6453 2.257207 CTCCTGGGTGTAGAAACTCCA 58.743 52.381 0.00 0.00 40.41 3.86
4512 6454 1.066071 GCTCCTGGGTGTAGAAACTCC 60.066 57.143 0.00 0.00 38.34 3.85
4513 6455 1.623811 TGCTCCTGGGTGTAGAAACTC 59.376 52.381 0.00 0.00 0.00 3.01
4514 6456 1.729586 TGCTCCTGGGTGTAGAAACT 58.270 50.000 0.00 0.00 0.00 2.66
4515 6457 2.561478 TTGCTCCTGGGTGTAGAAAC 57.439 50.000 0.00 0.00 0.00 2.78
4516 6458 3.420893 CATTTGCTCCTGGGTGTAGAAA 58.579 45.455 0.00 0.00 0.00 2.52
4517 6459 2.879756 GCATTTGCTCCTGGGTGTAGAA 60.880 50.000 0.00 0.00 38.21 2.10
4518 6460 1.340017 GCATTTGCTCCTGGGTGTAGA 60.340 52.381 0.00 0.00 38.21 2.59
4519 6461 1.098050 GCATTTGCTCCTGGGTGTAG 58.902 55.000 0.00 0.00 38.21 2.74
4520 6462 0.323360 GGCATTTGCTCCTGGGTGTA 60.323 55.000 2.12 0.00 41.70 2.90
4521 6463 1.607467 GGCATTTGCTCCTGGGTGT 60.607 57.895 2.12 0.00 41.70 4.16
4522 6464 2.353610 GGGCATTTGCTCCTGGGTG 61.354 63.158 2.12 0.00 41.70 4.61
4523 6465 2.037847 GGGCATTTGCTCCTGGGT 59.962 61.111 2.12 0.00 41.70 4.51
4529 6471 1.607467 ACACCAGGGGCATTTGCTC 60.607 57.895 2.12 0.00 41.88 4.26
4530 6472 1.909781 CACACCAGGGGCATTTGCT 60.910 57.895 2.12 0.00 41.70 3.91
4531 6473 1.470996 TTCACACCAGGGGCATTTGC 61.471 55.000 0.00 0.00 41.14 3.68
4532 6474 0.318120 GTTCACACCAGGGGCATTTG 59.682 55.000 0.00 0.00 0.00 2.32
4533 6475 0.105760 TGTTCACACCAGGGGCATTT 60.106 50.000 0.00 0.00 0.00 2.32
4534 6476 0.540365 CTGTTCACACCAGGGGCATT 60.540 55.000 0.00 0.00 0.00 3.56
4535 6477 1.075482 CTGTTCACACCAGGGGCAT 59.925 57.895 0.00 0.00 0.00 4.40
4536 6478 1.057275 TACTGTTCACACCAGGGGCA 61.057 55.000 0.00 0.00 34.16 5.36
4537 6479 0.109723 TTACTGTTCACACCAGGGGC 59.890 55.000 0.00 0.00 34.16 5.80
4538 6480 1.142060 TGTTACTGTTCACACCAGGGG 59.858 52.381 0.00 0.00 34.16 4.79
4539 6481 2.631160 TGTTACTGTTCACACCAGGG 57.369 50.000 0.00 0.00 34.16 4.45
4540 6482 3.738982 TGATGTTACTGTTCACACCAGG 58.261 45.455 0.00 0.00 34.16 4.45
4541 6483 5.749596 TTTGATGTTACTGTTCACACCAG 57.250 39.130 0.00 0.00 36.01 4.00
4542 6484 7.809546 TTATTTGATGTTACTGTTCACACCA 57.190 32.000 0.00 0.00 0.00 4.17
4543 6485 9.691362 AATTTATTTGATGTTACTGTTCACACC 57.309 29.630 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.