Multiple sequence alignment - TraesCS7A01G155600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G155600 chr7A 100.000 2353 0 0 937 3289 108547849 108545497 0.000000e+00 4346.0
1 TraesCS7A01G155600 chr7A 100.000 613 0 0 1 613 108548785 108548173 0.000000e+00 1133.0
2 TraesCS7A01G155600 chr7A 78.610 1122 158 49 1557 2653 119466719 119467783 0.000000e+00 667.0
3 TraesCS7A01G155600 chr7A 86.770 582 39 11 1513 2083 108565974 108565420 6.030000e-172 614.0
4 TraesCS7A01G155600 chr7A 78.537 834 131 28 1695 2492 238604185 238603364 3.790000e-139 505.0
5 TraesCS7A01G155600 chr7A 81.637 452 49 24 1719 2150 119306164 119305727 8.740000e-91 344.0
6 TraesCS7A01G155600 chr7A 85.387 349 20 18 942 1272 119461870 119462205 1.890000e-87 333.0
7 TraesCS7A01G155600 chr7A 84.615 351 22 18 942 1272 119307009 119306671 1.470000e-83 320.0
8 TraesCS7A01G155600 chr7A 81.868 364 46 9 1659 2007 238121834 238121476 4.150000e-74 289.0
9 TraesCS7A01G155600 chr7A 84.354 294 25 14 1189 1468 108566334 108566048 5.410000e-68 268.0
10 TraesCS7A01G155600 chr7A 78.173 197 31 7 2710 2900 238602947 238602757 7.460000e-22 115.0
11 TraesCS7A01G155600 chr7B 89.730 1558 82 29 1634 3138 62478909 62477377 0.000000e+00 1919.0
12 TraesCS7A01G155600 chr7B 90.845 710 40 10 937 1633 62479686 62478989 0.000000e+00 928.0
13 TraesCS7A01G155600 chr7B 90.842 404 27 4 1757 2150 62483530 62483127 1.740000e-147 532.0
14 TraesCS7A01G155600 chr7B 85.892 482 31 16 938 1394 73936672 73936203 2.300000e-131 479.0
15 TraesCS7A01G155600 chr7B 86.916 428 17 18 942 1343 73989997 73990411 8.370000e-121 444.0
16 TraesCS7A01G155600 chr7B 77.078 842 137 31 1695 2492 198491536 198490707 5.040000e-118 435.0
17 TraesCS7A01G155600 chr7B 83.296 443 38 19 1046 1468 62484402 62483976 3.100000e-100 375.0
18 TraesCS7A01G155600 chr7B 81.960 449 51 17 1719 2150 73934784 73934349 1.450000e-93 353.0
19 TraesCS7A01G155600 chr7B 93.171 205 14 0 190 394 220960831 220960627 5.330000e-78 302.0
20 TraesCS7A01G155600 chr7B 92.195 205 16 0 190 394 750333693 750333489 1.150000e-74 291.0
21 TraesCS7A01G155600 chr7B 92.611 203 8 3 394 589 62479956 62479754 5.370000e-73 285.0
22 TraesCS7A01G155600 chr7B 90.732 205 16 2 1 203 750334488 750334285 1.500000e-68 270.0
23 TraesCS7A01G155600 chr7B 90.640 203 18 1 1 203 220961608 220961407 5.410000e-68 268.0
24 TraesCS7A01G155600 chr7B 86.111 252 21 6 2402 2653 73992650 73992887 3.260000e-65 259.0
25 TraesCS7A01G155600 chr7B 85.034 147 15 4 2314 2458 73993679 73993820 3.420000e-30 143.0
26 TraesCS7A01G155600 chr7B 91.250 80 4 1 2574 2653 198490445 198490369 4.490000e-19 106.0
27 TraesCS7A01G155600 chr7B 95.745 47 2 0 3186 3232 62477362 62477316 3.520000e-10 76.8
28 TraesCS7A01G155600 chr7D 87.409 1104 81 22 2065 3136 104225317 104224240 0.000000e+00 1216.0
29 TraesCS7A01G155600 chr7D 85.593 1180 97 30 984 2152 104366593 104365476 0.000000e+00 1170.0
30 TraesCS7A01G155600 chr7D 83.894 981 95 32 1275 2216 104226977 104226021 0.000000e+00 878.0
31 TraesCS7A01G155600 chr7D 78.765 923 134 41 1557 2458 114469996 114470877 2.220000e-156 562.0
32 TraesCS7A01G155600 chr7D 76.929 1205 140 62 1053 2157 226114937 226113771 2.870000e-155 558.0
33 TraesCS7A01G155600 chr7D 85.447 481 34 19 938 1394 114150718 114150250 4.970000e-128 468.0
34 TraesCS7A01G155600 chr7D 81.292 449 54 17 1719 2150 114149618 114149183 1.460000e-88 337.0
35 TraesCS7A01G155600 chr7D 79.661 472 70 15 2040 2492 226570450 226569986 1.900000e-82 316.0
36 TraesCS7A01G155600 chr7D 87.676 284 17 11 995 1272 114468747 114469018 6.850000e-82 315.0
37 TraesCS7A01G155600 chr7D 82.759 261 12 7 993 1251 104227201 104226972 5.560000e-48 202.0
38 TraesCS7A01G155600 chr7D 86.592 179 13 6 2475 2653 114471492 114471659 1.560000e-43 187.0
39 TraesCS7A01G155600 chr7D 82.353 119 12 5 2782 2900 226569550 226569441 9.720000e-16 95.3
40 TraesCS7A01G155600 chr4B 92.694 219 15 1 190 408 665463887 665464104 6.850000e-82 315.0
41 TraesCS7A01G155600 chr4B 90.640 203 18 1 1 203 665463110 665463311 5.410000e-68 268.0
42 TraesCS7A01G155600 chr2A 92.453 212 15 1 190 401 382804437 382804227 5.330000e-78 302.0
43 TraesCS7A01G155600 chr2A 91.626 203 15 2 1 203 382805223 382805023 2.500000e-71 279.0
44 TraesCS7A01G155600 chr2A 80.973 226 33 9 190 411 276390878 276390659 1.570000e-38 171.0
45 TraesCS7A01G155600 chr2A 95.349 43 1 1 3141 3182 736549951 736549993 2.120000e-07 67.6
46 TraesCS7A01G155600 chr1B 93.204 206 13 1 190 395 685118762 685118966 5.330000e-78 302.0
47 TraesCS7A01G155600 chr1B 91.626 203 15 2 1 203 685117976 685118176 2.500000e-71 279.0
48 TraesCS7A01G155600 chr1B 89.655 203 17 2 1 203 169660854 169661052 4.210000e-64 255.0
49 TraesCS7A01G155600 chr5A 95.556 180 8 0 3 182 130005922 130006101 4.150000e-74 289.0
50 TraesCS7A01G155600 chr5A 95.000 180 9 0 3 182 129490732 129490911 1.930000e-72 283.0
51 TraesCS7A01G155600 chr5A 89.706 204 18 2 190 393 669451196 669450996 1.170000e-64 257.0
52 TraesCS7A01G155600 chr5B 91.133 203 13 4 1 203 321784477 321784674 1.500000e-68 270.0
53 TraesCS7A01G155600 chr3B 89.151 212 20 2 190 401 9683316 9683524 9.050000e-66 261.0
54 TraesCS7A01G155600 chr2B 90.452 199 17 1 190 388 41954885 41955081 9.050000e-66 261.0
55 TraesCS7A01G155600 chr2B 88.318 214 22 2 190 403 50161497 50161707 1.510000e-63 254.0
56 TraesCS7A01G155600 chr6D 100.000 36 0 0 3147 3182 469050121 469050086 2.120000e-07 67.6
57 TraesCS7A01G155600 chr5D 100.000 36 0 0 3147 3182 476702192 476702157 2.120000e-07 67.6
58 TraesCS7A01G155600 chr4A 93.478 46 1 2 3136 3181 729053541 729053584 2.120000e-07 67.6
59 TraesCS7A01G155600 chrUn 100.000 35 0 0 3148 3182 368803503 368803469 7.620000e-07 65.8
60 TraesCS7A01G155600 chr4D 100.000 35 0 0 3148 3182 409166411 409166377 7.620000e-07 65.8
61 TraesCS7A01G155600 chr3D 100.000 35 0 0 3148 3182 5344094 5344128 7.620000e-07 65.8
62 TraesCS7A01G155600 chr3D 100.000 35 0 0 3148 3182 481919656 481919622 7.620000e-07 65.8
63 TraesCS7A01G155600 chr3D 100.000 35 0 0 3148 3182 587744573 587744539 7.620000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G155600 chr7A 108545497 108548785 3288 True 2739.500000 4346 100.000000 1 3289 2 chr7A.!!$R2 3288
1 TraesCS7A01G155600 chr7A 119466719 119467783 1064 False 667.000000 667 78.610000 1557 2653 1 chr7A.!!$F2 1096
2 TraesCS7A01G155600 chr7A 108565420 108566334 914 True 441.000000 614 85.562000 1189 2083 2 chr7A.!!$R3 894
3 TraesCS7A01G155600 chr7A 119305727 119307009 1282 True 332.000000 344 83.126000 942 2150 2 chr7A.!!$R4 1208
4 TraesCS7A01G155600 chr7A 238602757 238604185 1428 True 310.000000 505 78.355000 1695 2900 2 chr7A.!!$R5 1205
5 TraesCS7A01G155600 chr7B 62477316 62484402 7086 True 685.966667 1919 90.511500 394 3232 6 chr7B.!!$R1 2838
6 TraesCS7A01G155600 chr7B 73934349 73936672 2323 True 416.000000 479 83.926000 938 2150 2 chr7B.!!$R2 1212
7 TraesCS7A01G155600 chr7B 220960627 220961608 981 True 285.000000 302 91.905500 1 394 2 chr7B.!!$R4 393
8 TraesCS7A01G155600 chr7B 73989997 73993820 3823 False 282.000000 444 86.020333 942 2653 3 chr7B.!!$F1 1711
9 TraesCS7A01G155600 chr7B 750333489 750334488 999 True 280.500000 291 91.463500 1 394 2 chr7B.!!$R5 393
10 TraesCS7A01G155600 chr7B 198490369 198491536 1167 True 270.500000 435 84.164000 1695 2653 2 chr7B.!!$R3 958
11 TraesCS7A01G155600 chr7D 104365476 104366593 1117 True 1170.000000 1170 85.593000 984 2152 1 chr7D.!!$R1 1168
12 TraesCS7A01G155600 chr7D 104224240 104227201 2961 True 765.333333 1216 84.687333 993 3136 3 chr7D.!!$R3 2143
13 TraesCS7A01G155600 chr7D 226113771 226114937 1166 True 558.000000 558 76.929000 1053 2157 1 chr7D.!!$R2 1104
14 TraesCS7A01G155600 chr7D 114149183 114150718 1535 True 402.500000 468 83.369500 938 2150 2 chr7D.!!$R4 1212
15 TraesCS7A01G155600 chr7D 114468747 114471659 2912 False 354.666667 562 84.344333 995 2653 3 chr7D.!!$F1 1658
16 TraesCS7A01G155600 chr7D 226569441 226570450 1009 True 205.650000 316 81.007000 2040 2900 2 chr7D.!!$R5 860
17 TraesCS7A01G155600 chr4B 665463110 665464104 994 False 291.500000 315 91.667000 1 408 2 chr4B.!!$F1 407
18 TraesCS7A01G155600 chr2A 382804227 382805223 996 True 290.500000 302 92.039500 1 401 2 chr2A.!!$R2 400
19 TraesCS7A01G155600 chr1B 685117976 685118966 990 False 290.500000 302 92.415000 1 395 2 chr1B.!!$F2 394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 986 1.056700 AACCACTGCACCTCCACTCT 61.057 55.0 0.00 0.0 0.0 3.24 F
1106 5193 0.888619 CAGGTACCAGTTCGCTCTCA 59.111 55.0 15.94 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1356 5664 0.955428 TCTGCAAGCCGGCACTTAAG 60.955 55.0 31.54 18.61 39.25 1.85 R
2817 11585 0.179020 CAGGTCAAGCACACCCTTCA 60.179 55.0 0.00 0.00 33.96 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 58 8.825667 TTTTCTTTTATAGGTTGGATTTGCAC 57.174 30.769 0.00 0.00 0.00 4.57
355 976 2.762887 CTCTCTATCTCCAACCACTGCA 59.237 50.000 0.00 0.00 0.00 4.41
365 986 1.056700 AACCACTGCACCTCCACTCT 61.057 55.000 0.00 0.00 0.00 3.24
429 4485 9.697250 GTAAAAGAAAACACAAAGCATAAAACC 57.303 29.630 0.00 0.00 0.00 3.27
517 4578 1.524848 ACTTTCTCTCGTCTCGCTCA 58.475 50.000 0.00 0.00 0.00 4.26
1102 5189 1.178276 CTCTCAGGTACCAGTTCGCT 58.822 55.000 15.94 0.00 0.00 4.93
1103 5190 1.133407 CTCTCAGGTACCAGTTCGCTC 59.867 57.143 15.94 0.00 0.00 5.03
1105 5192 1.133407 CTCAGGTACCAGTTCGCTCTC 59.867 57.143 15.94 0.00 0.00 3.20
1106 5193 0.888619 CAGGTACCAGTTCGCTCTCA 59.111 55.000 15.94 0.00 0.00 3.27
1107 5194 1.135257 CAGGTACCAGTTCGCTCTCAG 60.135 57.143 15.94 0.00 0.00 3.35
1129 5216 1.871676 CTCGTTCGATCGATCCACCTA 59.128 52.381 20.18 0.00 39.12 3.08
1130 5217 1.871676 TCGTTCGATCGATCCACCTAG 59.128 52.381 20.18 4.69 34.85 3.02
1131 5218 1.663445 CGTTCGATCGATCCACCTAGC 60.663 57.143 20.18 0.00 0.00 3.42
1132 5219 1.609555 GTTCGATCGATCCACCTAGCT 59.390 52.381 20.18 0.00 0.00 3.32
1141 5228 2.767644 TCCACCTAGCTAGTATGCCA 57.232 50.000 19.31 4.48 0.00 4.92
1272 5421 8.918202 TTCCCCAGACAATAACAATGATATAC 57.082 34.615 0.00 0.00 0.00 1.47
1274 5423 6.128282 CCCCAGACAATAACAATGATATACGC 60.128 42.308 0.00 0.00 0.00 4.42
1347 5655 3.947196 TGATGGTGAATATTGCCACTGAC 59.053 43.478 9.72 4.71 34.84 3.51
1356 5664 1.454572 TTGCCACTGACATGTGCACC 61.455 55.000 15.69 0.00 36.68 5.01
1414 5737 6.810182 AGAATTATGTGCTGAATTTGTTGCTC 59.190 34.615 0.00 0.00 0.00 4.26
1430 5753 3.088194 TGCTCTTGCTTGCTTGAAAAG 57.912 42.857 0.00 0.00 43.26 2.27
1554 6993 1.008327 TGGAGGGAAGAGGAGTATGCA 59.992 52.381 0.00 0.00 0.00 3.96
1555 6994 1.414550 GGAGGGAAGAGGAGTATGCAC 59.585 57.143 0.00 0.00 0.00 4.57
1579 7018 7.545615 CACTCCTTATGTTTTATTTTCCCTTGC 59.454 37.037 0.00 0.00 0.00 4.01
1584 7023 5.208463 TGTTTTATTTTCCCTTGCTGACC 57.792 39.130 0.00 0.00 0.00 4.02
1638 7190 9.723601 ACCACTACTGTATAGCTTCTAGTATAC 57.276 37.037 0.00 0.00 34.13 1.47
1639 7191 9.722184 CCACTACTGTATAGCTTCTAGTATACA 57.278 37.037 5.50 9.41 38.98 2.29
1688 7243 3.733443 AAAGCATGTCCAAGAACCAAC 57.267 42.857 0.00 0.00 0.00 3.77
1692 7247 3.010584 AGCATGTCCAAGAACCAACCTAT 59.989 43.478 0.00 0.00 0.00 2.57
1693 7248 3.378427 GCATGTCCAAGAACCAACCTATC 59.622 47.826 0.00 0.00 0.00 2.08
1737 7295 9.413048 GTCAGTATTGATAGCTTTAGACATACC 57.587 37.037 0.00 0.00 35.39 2.73
1740 7298 8.589338 AGTATTGATAGCTTTAGACATACCAGG 58.411 37.037 0.00 0.00 0.00 4.45
1748 7306 5.755849 CTTTAGACATACCAGGGGTCAAAT 58.244 41.667 9.94 0.00 37.09 2.32
1798 7361 5.957771 AGAAGGACTATTGTTAGCCATGA 57.042 39.130 0.00 0.00 0.00 3.07
1807 7370 7.879070 ACTATTGTTAGCCATGAAATGCATAG 58.121 34.615 0.00 0.00 44.97 2.23
1822 7389 5.584253 ATGCATAGTCTCTCGTTAACAGT 57.416 39.130 6.39 0.00 0.00 3.55
1854 7421 4.034394 TGCATGAATAGCTGCTTTAACTCG 59.966 41.667 7.79 0.00 39.16 4.18
1927 8138 1.153901 CAGCAATGGAGCCAAAGCG 60.154 57.895 9.81 3.70 46.67 4.68
1958 8185 3.359950 AGGAAGGAGGTTGATCATTTGC 58.640 45.455 0.00 0.00 0.00 3.68
2002 8230 4.387598 GAGTGCAGATAGATGGCAAGATT 58.612 43.478 0.00 0.00 39.57 2.40
2174 10049 0.404040 ATGGGCTGAAAAGGAACGGA 59.596 50.000 0.00 0.00 0.00 4.69
2178 10053 1.866925 CTGAAAAGGAACGGACGGC 59.133 57.895 0.00 0.00 0.00 5.68
2219 10094 3.459232 GCTCTTGCTTTTGGTTTCCTT 57.541 42.857 0.00 0.00 36.03 3.36
2276 10172 2.551270 CTGCGTGTCGTCTTTGGC 59.449 61.111 0.00 0.00 0.00 4.52
2331 10230 5.815740 ACTCTGCTTATGGTATGTAAAACCG 59.184 40.000 0.00 0.00 40.08 4.44
2337 10236 6.073927 GCTTATGGTATGTAAAACCGAGTAGC 60.074 42.308 0.00 0.00 40.08 3.58
2338 10237 4.127566 TGGTATGTAAAACCGAGTAGCC 57.872 45.455 0.00 0.00 40.08 3.93
2394 10305 8.744652 TGGTATGGAAAACCTGTTTATATGTTG 58.255 33.333 0.00 0.00 37.91 3.33
2395 10306 8.745590 GGTATGGAAAACCTGTTTATATGTTGT 58.254 33.333 0.00 0.00 33.97 3.32
2396 10307 9.783256 GTATGGAAAACCTGTTTATATGTTGTC 57.217 33.333 0.00 0.00 31.63 3.18
2397 10308 8.650143 ATGGAAAACCTGTTTATATGTTGTCT 57.350 30.769 0.00 0.00 31.63 3.41
2398 10309 9.747898 ATGGAAAACCTGTTTATATGTTGTCTA 57.252 29.630 0.00 0.00 31.63 2.59
2399 10310 9.575868 TGGAAAACCTGTTTATATGTTGTCTAA 57.424 29.630 0.00 0.00 31.63 2.10
2516 11028 3.555168 GGTGCTCTGTTAAGTACTGCAGT 60.555 47.826 25.12 25.12 33.01 4.40
2517 11029 4.058817 GTGCTCTGTTAAGTACTGCAGTT 58.941 43.478 27.06 10.01 32.28 3.16
2518 11030 5.227908 GTGCTCTGTTAAGTACTGCAGTTA 58.772 41.667 27.06 8.83 32.28 2.24
2519 11031 5.694910 GTGCTCTGTTAAGTACTGCAGTTAA 59.305 40.000 27.06 14.87 32.28 2.01
2553 11065 3.760738 TGGTAATTGAATCTGGTGTGCA 58.239 40.909 0.00 0.00 0.00 4.57
2666 11419 3.433615 GGCTTCACTACATTGTCACTGTC 59.566 47.826 0.00 0.00 0.00 3.51
2684 11437 8.297426 GTCACTGTCGTCATATATTGGAATCTA 58.703 37.037 0.00 0.00 0.00 1.98
2695 11448 8.867935 CATATATTGGAATCTACGCTCTCAAAG 58.132 37.037 0.00 0.00 0.00 2.77
2725 11489 8.727100 AAAGAAAAAGGAATCTCCAATAACCT 57.273 30.769 0.00 0.00 39.61 3.50
2726 11490 8.727100 AAGAAAAAGGAATCTCCAATAACCTT 57.273 30.769 0.00 0.00 39.61 3.50
2744 11508 2.613725 CCTTCTTTGGCCCATTTTCTGC 60.614 50.000 0.00 0.00 0.00 4.26
2750 11514 1.976404 TGGCCCATTTTCTGCATTTGA 59.024 42.857 0.00 0.00 0.00 2.69
2754 11518 4.382901 GGCCCATTTTCTGCATTTGATACA 60.383 41.667 0.00 0.00 0.00 2.29
2802 11570 3.674753 GGCAATTCGGATGTTGTCAAAAG 59.325 43.478 4.10 0.00 30.61 2.27
2803 11571 4.298332 GCAATTCGGATGTTGTCAAAAGT 58.702 39.130 0.00 0.00 0.00 2.66
2815 11583 7.639113 TGTTGTCAAAAGTAAAGGTGAGAAT 57.361 32.000 0.00 0.00 0.00 2.40
2817 11585 7.122055 TGTTGTCAAAAGTAAAGGTGAGAATGT 59.878 33.333 0.00 0.00 0.00 2.71
2857 11625 5.290493 TGATCGGTCAGCAGGTTTTATAT 57.710 39.130 0.00 0.00 0.00 0.86
2858 11626 6.413783 TGATCGGTCAGCAGGTTTTATATA 57.586 37.500 0.00 0.00 0.00 0.86
2859 11627 6.455647 TGATCGGTCAGCAGGTTTTATATAG 58.544 40.000 0.00 0.00 0.00 1.31
2879 11647 4.900635 AGCGTTGAGTTTGACAGAATTT 57.099 36.364 0.00 0.00 0.00 1.82
2927 11695 7.657354 CGAGGGACATTTGATATGTCTGAATAA 59.343 37.037 14.14 0.00 45.60 1.40
2928 11696 8.915057 AGGGACATTTGATATGTCTGAATAAG 57.085 34.615 14.14 0.00 45.60 1.73
2929 11697 8.497745 AGGGACATTTGATATGTCTGAATAAGT 58.502 33.333 14.14 0.00 45.60 2.24
2930 11698 8.562892 GGGACATTTGATATGTCTGAATAAGTG 58.437 37.037 14.14 0.00 45.60 3.16
2931 11699 9.330063 GGACATTTGATATGTCTGAATAAGTGA 57.670 33.333 14.14 0.00 45.60 3.41
2985 11753 2.358737 CACGACAGAAGGGTGGCC 60.359 66.667 0.00 0.00 0.00 5.36
2986 11754 2.526873 ACGACAGAAGGGTGGCCT 60.527 61.111 3.32 0.00 0.00 5.19
3001 11769 1.003580 TGGCCTTCAGACTAAAGCCTG 59.996 52.381 3.32 0.00 0.00 4.85
3010 11778 3.683822 CAGACTAAAGCCTGCAGAGAAAG 59.316 47.826 17.39 8.30 0.00 2.62
3022 11792 1.172812 AGAGAAAGCCGGGTTGCAAC 61.173 55.000 25.99 21.59 0.00 4.17
3031 11801 2.668280 GGGTTGCAACTCGTCGCTC 61.668 63.158 27.64 9.37 0.00 5.03
3051 11821 7.282224 GTCGCTCTCAGATCTCAGGTTATATAT 59.718 40.741 0.00 0.00 0.00 0.86
3053 11823 7.066887 CGCTCTCAGATCTCAGGTTATATATGT 59.933 40.741 0.00 0.00 0.00 2.29
3091 11863 1.482278 TTTTAGCCGCGTTGCTTTTG 58.518 45.000 14.99 0.00 42.75 2.44
3138 11914 4.251268 TCTGATCAACAAGATGCTGTCTG 58.749 43.478 0.00 0.00 37.00 3.51
3139 11915 2.745821 TGATCAACAAGATGCTGTCTGC 59.254 45.455 0.00 0.00 37.00 4.26
3141 11917 2.148768 TCAACAAGATGCTGTCTGCTG 58.851 47.619 3.20 0.00 43.37 4.41
3144 11920 1.878088 ACAAGATGCTGTCTGCTGTTG 59.122 47.619 3.20 6.51 43.37 3.33
3145 11921 2.148768 CAAGATGCTGTCTGCTGTTGA 58.851 47.619 3.20 0.00 43.37 3.18
3146 11922 2.096220 AGATGCTGTCTGCTGTTGAG 57.904 50.000 3.20 0.00 43.37 3.02
3147 11923 1.085091 GATGCTGTCTGCTGTTGAGG 58.915 55.000 3.20 0.00 43.37 3.86
3149 11925 0.034476 TGCTGTCTGCTGTTGAGGAG 59.966 55.000 3.20 0.00 43.37 3.69
3151 11927 1.793258 CTGTCTGCTGTTGAGGAGTG 58.207 55.000 0.00 0.00 38.74 3.51
3152 11928 1.342496 CTGTCTGCTGTTGAGGAGTGA 59.658 52.381 0.00 0.00 38.74 3.41
3154 11930 2.224137 TGTCTGCTGTTGAGGAGTGAAG 60.224 50.000 0.00 0.00 38.74 3.02
3158 11934 1.811558 GCTGTTGAGGAGTGAAGTGCA 60.812 52.381 0.00 0.00 0.00 4.57
3159 11935 2.775890 CTGTTGAGGAGTGAAGTGCAT 58.224 47.619 0.00 0.00 0.00 3.96
3160 11936 2.740981 CTGTTGAGGAGTGAAGTGCATC 59.259 50.000 0.00 0.00 0.00 3.91
3161 11937 2.104622 TGTTGAGGAGTGAAGTGCATCA 59.895 45.455 0.00 0.00 0.00 3.07
3162 11938 3.244665 TGTTGAGGAGTGAAGTGCATCAT 60.245 43.478 0.00 0.00 0.00 2.45
3163 11939 4.020307 TGTTGAGGAGTGAAGTGCATCATA 60.020 41.667 0.00 0.00 0.00 2.15
3164 11940 4.397481 TGAGGAGTGAAGTGCATCATAG 57.603 45.455 0.00 0.00 0.00 2.23
3165 11941 3.133542 TGAGGAGTGAAGTGCATCATAGG 59.866 47.826 0.00 0.00 0.00 2.57
3166 11942 3.110705 AGGAGTGAAGTGCATCATAGGT 58.889 45.455 0.00 0.00 0.00 3.08
3167 11943 3.133721 AGGAGTGAAGTGCATCATAGGTC 59.866 47.826 0.00 0.00 0.00 3.85
3168 11944 3.462021 GAGTGAAGTGCATCATAGGTCC 58.538 50.000 0.00 0.00 0.00 4.46
3169 11945 3.110705 AGTGAAGTGCATCATAGGTCCT 58.889 45.455 0.00 0.00 0.00 3.85
3171 11947 3.106827 TGAAGTGCATCATAGGTCCTCA 58.893 45.455 0.00 0.00 0.00 3.86
3172 11948 3.519107 TGAAGTGCATCATAGGTCCTCAA 59.481 43.478 0.00 0.00 0.00 3.02
3173 11949 4.019411 TGAAGTGCATCATAGGTCCTCAAA 60.019 41.667 0.00 0.00 0.00 2.69
3176 11952 4.716784 AGTGCATCATAGGTCCTCAAACTA 59.283 41.667 0.00 0.00 0.00 2.24
3178 11954 6.058183 GTGCATCATAGGTCCTCAAACTATT 58.942 40.000 0.00 0.00 0.00 1.73
3182 11958 7.254932 GCATCATAGGTCCTCAAACTATTTCAC 60.255 40.741 0.00 0.00 0.00 3.18
3183 11959 6.338146 TCATAGGTCCTCAAACTATTTCACG 58.662 40.000 0.00 0.00 0.00 4.35
3185 11961 3.008049 AGGTCCTCAAACTATTTCACGCT 59.992 43.478 0.00 0.00 0.00 5.07
3186 11962 3.125316 GGTCCTCAAACTATTTCACGCTG 59.875 47.826 0.00 0.00 0.00 5.18
3187 11963 3.746492 GTCCTCAAACTATTTCACGCTGT 59.254 43.478 0.00 0.00 0.00 4.40
3188 11964 4.213482 GTCCTCAAACTATTTCACGCTGTT 59.787 41.667 0.00 0.00 0.00 3.16
3239 12015 4.925861 GCTGATCGCTCCTGGCCC 62.926 72.222 0.00 0.00 37.74 5.80
3240 12016 4.247380 CTGATCGCTCCTGGCCCC 62.247 72.222 0.00 0.00 37.74 5.80
3246 12022 3.564218 GCTCCTGGCCCCGATGAT 61.564 66.667 0.00 0.00 34.27 2.45
3248 12024 3.231889 CTCCTGGCCCCGATGATCG 62.232 68.421 8.05 8.05 40.07 3.69
3249 12025 3.550431 CCTGGCCCCGATGATCGT 61.550 66.667 14.27 0.00 38.40 3.73
3251 12027 1.153168 CTGGCCCCGATGATCGTTT 60.153 57.895 14.27 0.00 38.40 3.60
3252 12028 0.748005 CTGGCCCCGATGATCGTTTT 60.748 55.000 14.27 0.00 38.40 2.43
3253 12029 0.746563 TGGCCCCGATGATCGTTTTC 60.747 55.000 14.27 1.77 38.40 2.29
3254 12030 0.746563 GGCCCCGATGATCGTTTTCA 60.747 55.000 14.27 0.00 38.40 2.69
3255 12031 1.091537 GCCCCGATGATCGTTTTCAA 58.908 50.000 14.27 0.00 38.40 2.69
3256 12032 1.064060 GCCCCGATGATCGTTTTCAAG 59.936 52.381 14.27 0.00 38.40 3.02
3257 12033 2.356135 CCCCGATGATCGTTTTCAAGT 58.644 47.619 14.27 0.00 38.40 3.16
3258 12034 3.527533 CCCCGATGATCGTTTTCAAGTA 58.472 45.455 14.27 0.00 38.40 2.24
3259 12035 3.936453 CCCCGATGATCGTTTTCAAGTAA 59.064 43.478 14.27 0.00 38.40 2.24
3260 12036 4.574828 CCCCGATGATCGTTTTCAAGTAAT 59.425 41.667 14.27 0.00 38.40 1.89
3261 12037 5.277345 CCCCGATGATCGTTTTCAAGTAATC 60.277 44.000 14.27 0.00 38.40 1.75
3262 12038 5.523916 CCCGATGATCGTTTTCAAGTAATCT 59.476 40.000 14.27 0.00 38.40 2.40
3264 12040 7.096023 CCCGATGATCGTTTTCAAGTAATCTAG 60.096 40.741 14.27 0.00 38.40 2.43
3266 12042 8.473016 CGATGATCGTTTTCAAGTAATCTAGTC 58.527 37.037 6.68 0.00 34.72 2.59
3267 12043 9.302345 GATGATCGTTTTCAAGTAATCTAGTCA 57.698 33.333 0.00 0.00 0.00 3.41
3268 12044 8.689251 TGATCGTTTTCAAGTAATCTAGTCAG 57.311 34.615 0.00 0.00 0.00 3.51
3270 12046 5.867716 TCGTTTTCAAGTAATCTAGTCAGCC 59.132 40.000 0.00 0.00 0.00 4.85
3271 12047 5.637810 CGTTTTCAAGTAATCTAGTCAGCCA 59.362 40.000 0.00 0.00 0.00 4.75
3272 12048 6.401153 CGTTTTCAAGTAATCTAGTCAGCCAC 60.401 42.308 0.00 0.00 0.00 5.01
3274 12050 3.130516 TCAAGTAATCTAGTCAGCCACGG 59.869 47.826 0.00 0.00 0.00 4.94
3275 12051 1.409427 AGTAATCTAGTCAGCCACGGC 59.591 52.381 0.00 0.00 42.33 5.68
3285 12061 2.594592 GCCACGGCTGAGTTTGGT 60.595 61.111 0.00 0.00 38.26 3.67
3286 12062 2.617274 GCCACGGCTGAGTTTGGTC 61.617 63.158 0.00 0.00 38.26 4.02
3287 12063 1.966451 CCACGGCTGAGTTTGGTCC 60.966 63.158 0.00 0.00 0.00 4.46
3288 12064 1.071471 CACGGCTGAGTTTGGTCCT 59.929 57.895 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 58 9.643693 AAGCAGAAAAATGATAACACAAATAGG 57.356 29.630 0.00 0.00 0.00 2.57
88 91 6.917533 AGTATCATGTTTTTCCTTCAAGCAG 58.082 36.000 0.00 0.00 0.00 4.24
186 189 9.935241 TTCAAGATGACATTATAGATTAGAGCC 57.065 33.333 0.00 0.00 0.00 4.70
333 954 3.027412 GCAGTGGTTGGAGATAGAGAGA 58.973 50.000 0.00 0.00 0.00 3.10
355 976 0.603569 CGTTGCTACAGAGTGGAGGT 59.396 55.000 0.00 0.00 0.00 3.85
365 986 3.892740 ATGCCCGTGCGTTGCTACA 62.893 57.895 0.00 0.00 41.78 2.74
408 4464 6.872920 TCAGGTTTTATGCTTTGTGTTTTCT 58.127 32.000 0.00 0.00 0.00 2.52
517 4578 0.598680 GCGCTGATATGTCTCGCCTT 60.599 55.000 14.92 0.00 39.39 4.35
524 4585 1.469940 CGATAGGGGCGCTGATATGTC 60.470 57.143 15.11 2.26 0.00 3.06
1096 5183 1.608822 GAACGAGACTGAGAGCGAAC 58.391 55.000 0.00 0.00 0.00 3.95
1099 5186 0.375454 ATCGAACGAGACTGAGAGCG 59.625 55.000 2.94 0.00 0.00 5.03
1102 5189 2.005971 TCGATCGAACGAGACTGAGA 57.994 50.000 16.99 0.00 37.37 3.27
1103 5190 2.349060 GGATCGATCGAACGAGACTGAG 60.349 54.545 23.50 0.00 45.22 3.35
1105 5192 1.330829 TGGATCGATCGAACGAGACTG 59.669 52.381 23.50 0.00 45.22 3.51
1106 5193 1.331138 GTGGATCGATCGAACGAGACT 59.669 52.381 23.50 6.66 45.22 3.24
1107 5194 1.597445 GGTGGATCGATCGAACGAGAC 60.597 57.143 23.50 16.95 45.22 3.36
1129 5216 2.487934 CGAATTGCTGGCATACTAGCT 58.512 47.619 2.71 0.00 40.52 3.32
1130 5217 1.069636 GCGAATTGCTGGCATACTAGC 60.070 52.381 0.00 0.00 41.73 3.42
1131 5218 2.957576 GCGAATTGCTGGCATACTAG 57.042 50.000 0.00 0.00 41.73 2.57
1249 5396 6.128282 GCGTATATCATTGTTATTGTCTGGGG 60.128 42.308 0.00 0.00 0.00 4.96
1265 5414 6.238953 GGTCTGAACTAGGAAAGCGTATATCA 60.239 42.308 0.00 0.00 0.00 2.15
1272 5421 3.320673 AAGGTCTGAACTAGGAAAGCG 57.679 47.619 0.00 0.00 0.00 4.68
1274 5423 6.651225 CCTAACAAAGGTCTGAACTAGGAAAG 59.349 42.308 2.85 0.00 40.94 2.62
1356 5664 0.955428 TCTGCAAGCCGGCACTTAAG 60.955 55.000 31.54 18.61 39.25 1.85
1414 5737 2.159057 ACCACCTTTTCAAGCAAGCAAG 60.159 45.455 0.00 0.00 0.00 4.01
1511 6950 5.086104 AGTAAATCGAGCGCCCATATATT 57.914 39.130 2.29 0.00 0.00 1.28
1554 6993 7.454694 AGCAAGGGAAAATAAAACATAAGGAGT 59.545 33.333 0.00 0.00 0.00 3.85
1555 6994 7.761249 CAGCAAGGGAAAATAAAACATAAGGAG 59.239 37.037 0.00 0.00 0.00 3.69
1579 7018 6.368516 ACATTTCAACAACAACAAAAGGTCAG 59.631 34.615 0.00 0.00 0.00 3.51
1737 7295 5.535753 AACTTTCAGAAATTTGACCCCTG 57.464 39.130 0.00 0.00 0.00 4.45
1740 7298 8.360390 ACTATCAAACTTTCAGAAATTTGACCC 58.640 33.333 22.41 0.00 42.22 4.46
1798 7361 6.398918 ACTGTTAACGAGAGACTATGCATTT 58.601 36.000 3.54 0.00 0.00 2.32
1807 7370 5.755813 TGTTAGTGACTGTTAACGAGAGAC 58.244 41.667 10.71 7.24 33.52 3.36
1822 7389 4.274214 GCAGCTATTCATGCATGTTAGTGA 59.726 41.667 25.43 3.76 42.11 3.41
1927 8138 1.840635 ACCTCCTTCCTAGCAACATCC 59.159 52.381 0.00 0.00 0.00 3.51
2002 8230 7.816513 GCTATCTCATCATCAACAATACTAGCA 59.183 37.037 0.00 0.00 0.00 3.49
2048 8276 3.883489 GCGCCTCCAATTAATTACCTCTT 59.117 43.478 0.00 0.00 0.00 2.85
2174 10049 1.191535 TAGTGAGCATTACCAGCCGT 58.808 50.000 0.00 0.00 0.00 5.68
2178 10053 5.121811 AGCTGAAATAGTGAGCATTACCAG 58.878 41.667 0.00 0.00 35.03 4.00
2219 10094 1.203212 TCGTAAAGTTCCCCTCCCAGA 60.203 52.381 0.00 0.00 0.00 3.86
2264 10139 1.067974 TCTTCTTCGCCAAAGACGACA 59.932 47.619 0.00 0.00 43.75 4.35
2270 10166 3.274288 AGGCTATTCTTCTTCGCCAAAG 58.726 45.455 0.00 0.00 43.07 2.77
2276 10172 3.033368 GCCCTAGGCTATTCTTCTTCG 57.967 52.381 2.05 0.00 46.69 3.79
2338 10237 6.398918 AGCTAACAGTGTAATACCAAGACTG 58.601 40.000 0.00 6.96 42.34 3.51
2389 10300 9.801873 GGCACAACAATTATTATTAGACAACAT 57.198 29.630 0.00 0.00 0.00 2.71
2666 11419 6.556212 AGAGCGTAGATTCCAATATATGACG 58.444 40.000 0.00 0.00 0.00 4.35
2684 11437 6.436843 TTTTCTTTCTTTCTTTGAGAGCGT 57.563 33.333 0.00 0.00 0.00 5.07
2725 11489 2.045524 TGCAGAAAATGGGCCAAAGAA 58.954 42.857 11.89 0.00 0.00 2.52
2726 11490 1.714541 TGCAGAAAATGGGCCAAAGA 58.285 45.000 11.89 0.00 0.00 2.52
2744 11508 9.912634 AGAACAATTACCAAAGTGTATCAAATG 57.087 29.630 0.00 0.00 42.73 2.32
2750 11514 8.576442 CCAAAGAGAACAATTACCAAAGTGTAT 58.424 33.333 0.00 0.00 42.73 2.29
2754 11518 7.418337 AACCAAAGAGAACAATTACCAAAGT 57.582 32.000 0.00 0.00 0.00 2.66
2802 11570 4.455877 CACCCTTCACATTCTCACCTTTAC 59.544 45.833 0.00 0.00 0.00 2.01
2803 11571 4.104102 ACACCCTTCACATTCTCACCTTTA 59.896 41.667 0.00 0.00 0.00 1.85
2815 11583 0.465460 GGTCAAGCACACCCTTCACA 60.465 55.000 0.00 0.00 0.00 3.58
2817 11585 0.179020 CAGGTCAAGCACACCCTTCA 60.179 55.000 0.00 0.00 33.96 3.02
2857 11625 5.747565 CAAATTCTGTCAAACTCAACGCTA 58.252 37.500 0.00 0.00 0.00 4.26
2858 11626 4.601019 CAAATTCTGTCAAACTCAACGCT 58.399 39.130 0.00 0.00 0.00 5.07
2859 11627 3.180387 GCAAATTCTGTCAAACTCAACGC 59.820 43.478 0.00 0.00 0.00 4.84
2879 11647 2.496871 AGATCAAAATGCCAATTCCGCA 59.503 40.909 0.00 0.00 41.28 5.69
2927 11695 5.132648 TGTTCCCCAAGCATCTATATTCACT 59.867 40.000 0.00 0.00 0.00 3.41
2928 11696 5.376625 TGTTCCCCAAGCATCTATATTCAC 58.623 41.667 0.00 0.00 0.00 3.18
2929 11697 5.645056 TGTTCCCCAAGCATCTATATTCA 57.355 39.130 0.00 0.00 0.00 2.57
2930 11698 5.827797 TGTTGTTCCCCAAGCATCTATATTC 59.172 40.000 0.00 0.00 32.51 1.75
2931 11699 5.765510 TGTTGTTCCCCAAGCATCTATATT 58.234 37.500 0.00 0.00 32.51 1.28
2932 11700 5.380043 CTGTTGTTCCCCAAGCATCTATAT 58.620 41.667 0.00 0.00 32.51 0.86
2933 11701 4.385199 CCTGTTGTTCCCCAAGCATCTATA 60.385 45.833 0.00 0.00 32.51 1.31
2934 11702 3.624777 CTGTTGTTCCCCAAGCATCTAT 58.375 45.455 0.00 0.00 32.51 1.98
2943 11711 1.228831 CATGGCCTGTTGTTCCCCA 60.229 57.895 3.32 0.00 0.00 4.96
3001 11769 2.982744 GCAACCCGGCTTTCTCTGC 61.983 63.158 0.00 0.00 0.00 4.26
3010 11778 3.723348 GACGAGTTGCAACCCGGC 61.723 66.667 32.35 28.59 34.22 6.13
3022 11792 1.261354 CTGAGATCTGAGAGCGACGAG 59.739 57.143 2.56 0.00 0.00 4.18
3091 11863 9.191995 GAAAGCTCTATGAACTTCTAGAATAGC 57.808 37.037 5.44 5.60 38.99 2.97
3099 11871 7.180322 TGATCAGAAAGCTCTATGAACTTCT 57.820 36.000 0.00 0.00 0.00 2.85
3138 11914 0.871057 GCACTTCACTCCTCAACAGC 59.129 55.000 0.00 0.00 0.00 4.40
3139 11915 2.245159 TGCACTTCACTCCTCAACAG 57.755 50.000 0.00 0.00 0.00 3.16
3141 11917 2.771089 TGATGCACTTCACTCCTCAAC 58.229 47.619 0.00 0.00 0.00 3.18
3144 11920 3.133721 ACCTATGATGCACTTCACTCCTC 59.866 47.826 0.00 0.00 0.00 3.71
3145 11921 3.110705 ACCTATGATGCACTTCACTCCT 58.889 45.455 0.00 0.00 0.00 3.69
3146 11922 3.462021 GACCTATGATGCACTTCACTCC 58.538 50.000 0.00 0.00 0.00 3.85
3147 11923 3.133721 AGGACCTATGATGCACTTCACTC 59.866 47.826 0.00 0.00 0.00 3.51
3149 11925 3.118629 TGAGGACCTATGATGCACTTCAC 60.119 47.826 0.00 0.00 0.00 3.18
3151 11927 3.827008 TGAGGACCTATGATGCACTTC 57.173 47.619 0.00 0.00 0.00 3.01
3152 11928 4.018960 AGTTTGAGGACCTATGATGCACTT 60.019 41.667 0.00 0.00 0.00 3.16
3154 11930 3.878778 AGTTTGAGGACCTATGATGCAC 58.121 45.455 0.00 0.00 0.00 4.57
3158 11934 6.986817 CGTGAAATAGTTTGAGGACCTATGAT 59.013 38.462 0.00 0.00 0.00 2.45
3159 11935 6.338146 CGTGAAATAGTTTGAGGACCTATGA 58.662 40.000 0.00 0.00 0.00 2.15
3160 11936 5.006746 GCGTGAAATAGTTTGAGGACCTATG 59.993 44.000 0.00 0.00 0.00 2.23
3161 11937 5.104900 AGCGTGAAATAGTTTGAGGACCTAT 60.105 40.000 0.00 0.00 0.00 2.57
3162 11938 4.222145 AGCGTGAAATAGTTTGAGGACCTA 59.778 41.667 0.00 0.00 0.00 3.08
3163 11939 3.008049 AGCGTGAAATAGTTTGAGGACCT 59.992 43.478 0.00 0.00 0.00 3.85
3164 11940 3.125316 CAGCGTGAAATAGTTTGAGGACC 59.875 47.826 0.00 0.00 0.00 4.46
3165 11941 3.746492 ACAGCGTGAAATAGTTTGAGGAC 59.254 43.478 0.00 0.00 0.00 3.85
3166 11942 4.002906 ACAGCGTGAAATAGTTTGAGGA 57.997 40.909 0.00 0.00 0.00 3.71
3167 11943 4.213270 TCAACAGCGTGAAATAGTTTGAGG 59.787 41.667 0.00 0.00 0.00 3.86
3168 11944 5.342806 TCAACAGCGTGAAATAGTTTGAG 57.657 39.130 0.00 0.00 0.00 3.02
3169 11945 4.319477 GCTCAACAGCGTGAAATAGTTTGA 60.319 41.667 0.00 0.00 35.39 2.69
3171 11947 4.147219 GCTCAACAGCGTGAAATAGTTT 57.853 40.909 0.00 0.00 35.39 2.66
3172 11948 3.813529 GCTCAACAGCGTGAAATAGTT 57.186 42.857 0.00 0.00 35.39 2.24
3185 11961 4.582869 ACATGATTTAGCTCAGCTCAACA 58.417 39.130 0.00 0.13 40.44 3.33
3186 11962 5.448360 GGAACATGATTTAGCTCAGCTCAAC 60.448 44.000 0.00 0.00 40.44 3.18
3187 11963 4.637534 GGAACATGATTTAGCTCAGCTCAA 59.362 41.667 0.00 0.00 40.44 3.02
3188 11964 4.080695 AGGAACATGATTTAGCTCAGCTCA 60.081 41.667 0.00 0.00 40.44 4.26
3234 12010 0.746563 GAAAACGATCATCGGGGCCA 60.747 55.000 12.67 0.00 45.59 5.36
3235 12011 0.746563 TGAAAACGATCATCGGGGCC 60.747 55.000 12.67 0.00 45.59 5.80
3236 12012 1.064060 CTTGAAAACGATCATCGGGGC 59.936 52.381 12.67 0.00 45.59 5.80
3237 12013 2.356135 ACTTGAAAACGATCATCGGGG 58.644 47.619 12.67 0.00 45.59 5.73
3238 12014 5.523916 AGATTACTTGAAAACGATCATCGGG 59.476 40.000 12.67 0.00 45.59 5.14
3239 12015 6.589830 AGATTACTTGAAAACGATCATCGG 57.410 37.500 12.67 0.00 45.59 4.18
3240 12016 8.341477 ACTAGATTACTTGAAAACGATCATCG 57.659 34.615 5.22 5.22 46.93 3.84
3241 12017 9.302345 TGACTAGATTACTTGAAAACGATCATC 57.698 33.333 0.00 0.00 0.00 2.92
3242 12018 9.307121 CTGACTAGATTACTTGAAAACGATCAT 57.693 33.333 0.00 0.00 0.00 2.45
3244 12020 7.254151 GGCTGACTAGATTACTTGAAAACGATC 60.254 40.741 0.00 0.00 0.00 3.69
3246 12022 5.867716 GGCTGACTAGATTACTTGAAAACGA 59.132 40.000 0.00 0.00 0.00 3.85
3248 12024 6.401153 CGTGGCTGACTAGATTACTTGAAAAC 60.401 42.308 0.00 0.00 0.00 2.43
3249 12025 5.637810 CGTGGCTGACTAGATTACTTGAAAA 59.362 40.000 0.00 0.00 0.00 2.29
3251 12027 4.381612 CCGTGGCTGACTAGATTACTTGAA 60.382 45.833 0.00 0.00 0.00 2.69
3252 12028 3.130516 CCGTGGCTGACTAGATTACTTGA 59.869 47.826 0.00 0.00 0.00 3.02
3253 12029 3.448686 CCGTGGCTGACTAGATTACTTG 58.551 50.000 0.00 0.00 0.00 3.16
3254 12030 2.159085 GCCGTGGCTGACTAGATTACTT 60.159 50.000 2.98 0.00 38.26 2.24
3255 12031 1.409427 GCCGTGGCTGACTAGATTACT 59.591 52.381 2.98 0.00 38.26 2.24
3256 12032 1.854227 GCCGTGGCTGACTAGATTAC 58.146 55.000 2.98 0.00 38.26 1.89
3268 12044 2.594592 ACCAAACTCAGCCGTGGC 60.595 61.111 1.67 1.67 42.33 5.01
3270 12046 1.071471 AGGACCAAACTCAGCCGTG 59.929 57.895 0.00 0.00 0.00 4.94
3271 12047 3.563512 AGGACCAAACTCAGCCGT 58.436 55.556 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.