Multiple sequence alignment - TraesCS7A01G154800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G154800 chr7A 100.000 6824 0 0 1 6824 107846262 107853085 0.000000e+00 12602.0
1 TraesCS7A01G154800 chr7A 94.444 108 6 0 3060 3167 107849220 107849327 4.230000e-37 167.0
2 TraesCS7A01G154800 chr7A 94.444 108 6 0 2959 3066 107849321 107849428 4.230000e-37 167.0
3 TraesCS7A01G154800 chr7B 92.452 2504 124 27 4342 6824 61562980 61565439 0.000000e+00 3517.0
4 TraesCS7A01G154800 chr7B 92.254 2285 98 34 812 3066 61557402 61559637 0.000000e+00 3166.0
5 TraesCS7A01G154800 chr7B 93.510 1094 48 11 3273 4345 61559698 61560789 0.000000e+00 1605.0
6 TraesCS7A01G154800 chr7B 96.396 222 7 1 3060 3280 61559530 61559751 1.400000e-96 364.0
7 TraesCS7A01G154800 chr7B 83.813 278 19 16 54 328 61555212 61555466 2.460000e-59 241.0
8 TraesCS7A01G154800 chr7B 93.333 60 4 0 18 77 61555151 61555210 9.430000e-14 89.8
9 TraesCS7A01G154800 chr7D 91.405 2327 113 35 775 3066 102968467 102970741 0.000000e+00 3109.0
10 TraesCS7A01G154800 chr7D 90.919 1795 101 18 5075 6824 102975052 102976829 0.000000e+00 2355.0
11 TraesCS7A01G154800 chr7D 92.656 1103 45 13 3273 4351 102970802 102971892 0.000000e+00 1555.0
12 TraesCS7A01G154800 chr7D 90.798 652 43 6 4342 4988 102974116 102974755 0.000000e+00 856.0
13 TraesCS7A01G154800 chr7D 81.977 516 39 26 154 657 102967884 102968357 8.300000e-104 388.0
14 TraesCS7A01G154800 chr7D 94.619 223 10 1 3060 3280 102970634 102970856 1.820000e-90 344.0
15 TraesCS7A01G154800 chr4D 91.294 850 37 18 916 1754 490990879 490991702 0.000000e+00 1125.0
16 TraesCS7A01G154800 chr5A 86.906 863 60 25 911 1754 160774645 160775473 0.000000e+00 918.0
17 TraesCS7A01G154800 chr5A 87.234 141 15 2 4476 4613 425560564 425560704 2.550000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G154800 chr7A 107846262 107853085 6823 False 4312.000000 12602 96.296000 1 6824 3 chr7A.!!$F1 6823
1 TraesCS7A01G154800 chr7B 61555151 61565439 10288 False 1497.133333 3517 91.959667 18 6824 6 chr7B.!!$F1 6806
2 TraesCS7A01G154800 chr7D 102967884 102976829 8945 False 1434.500000 3109 90.395667 154 6824 6 chr7D.!!$F1 6670
3 TraesCS7A01G154800 chr4D 490990879 490991702 823 False 1125.000000 1125 91.294000 916 1754 1 chr4D.!!$F1 838
4 TraesCS7A01G154800 chr5A 160774645 160775473 828 False 918.000000 918 86.906000 911 1754 1 chr5A.!!$F1 843

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 494 0.108851 CGCACATTTTTGGGGCCTAC 60.109 55.0 0.84 0.00 0.0 3.18 F
1203 2966 0.337082 TCTGTATCCCTCGTTCCCCA 59.663 55.0 0.00 0.00 0.0 4.96 F
1653 3436 0.462789 GCAACCTAGCTAGCCCGTTA 59.537 55.0 15.74 0.00 0.0 3.18 F
2154 3938 0.611896 AGAAACGGGCAAGGAATGGG 60.612 55.0 0.00 0.00 0.0 4.00 F
3435 5247 0.694771 AGCATCTGGACCACATGTGT 59.305 50.0 23.79 12.31 0.0 3.72 F
4628 8734 0.036010 CCTTTCTCAGCCACATCCGT 60.036 55.0 0.00 0.00 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1269 3033 0.464452 CTCGGGTTCTTCGGCCTAAT 59.536 55.0 0.00 0.0 0.00 1.73 R
2628 4412 0.035056 GAGCTGGCCACCAAGTGTAT 60.035 55.0 0.00 0.0 30.80 2.29 R
3503 5317 0.037697 TCGCTGCCGTACAACTGATT 60.038 50.0 0.00 0.0 35.54 2.57 R
4056 5872 0.105964 TCGCTTGTGTACCAGCTTGT 59.894 50.0 6.54 0.0 0.00 3.16 R
4791 8897 0.179020 CAATAGGGCATTCCGGCAGA 60.179 55.0 0.00 0.0 43.60 4.26 R
6319 10681 0.321653 AGTAACTTGGCTCGCCCTTG 60.322 55.0 5.33 0.0 34.56 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 6.108015 ACAACATTTGAATGGCATATTGTCC 58.892 36.000 0.00 0.00 40.70 4.02
60 61 5.909477 ACATTTGAATGGCATATTGTCCAG 58.091 37.500 0.00 0.00 40.70 3.86
63 89 3.205338 TGAATGGCATATTGTCCAGACG 58.795 45.455 0.00 0.00 35.57 4.18
83 109 6.093495 CAGACGGGAAGAAACTATTATTGCAA 59.907 38.462 0.00 0.00 30.62 4.08
96 122 7.543756 ACTATTATTGCAACATTTGGGTACAC 58.456 34.615 0.00 0.00 0.00 2.90
100 126 4.471904 TGCAACATTTGGGTACACAAAA 57.528 36.364 26.11 10.80 42.91 2.44
101 127 4.184629 TGCAACATTTGGGTACACAAAAC 58.815 39.130 26.11 13.82 42.91 2.43
102 128 4.081420 TGCAACATTTGGGTACACAAAACT 60.081 37.500 26.11 11.86 42.91 2.66
104 130 4.664150 ACATTTGGGTACACAAAACTGG 57.336 40.909 26.11 17.42 42.91 4.00
105 131 4.027437 ACATTTGGGTACACAAAACTGGT 58.973 39.130 26.11 17.99 42.91 4.00
107 133 5.046231 ACATTTGGGTACACAAAACTGGTTT 60.046 36.000 26.11 6.09 42.91 3.27
108 134 5.485209 TTTGGGTACACAAAACTGGTTTT 57.515 34.783 20.81 5.72 42.91 2.43
144 170 4.516698 GCGATATCATCCACCTTCAAACAT 59.483 41.667 3.12 0.00 0.00 2.71
147 173 2.170166 TCATCCACCTTCAAACATGGC 58.830 47.619 0.00 0.00 31.87 4.40
148 174 2.173519 CATCCACCTTCAAACATGGCT 58.826 47.619 0.00 0.00 31.87 4.75
149 175 3.010027 TCATCCACCTTCAAACATGGCTA 59.990 43.478 0.00 0.00 31.87 3.93
150 176 2.790433 TCCACCTTCAAACATGGCTAC 58.210 47.619 0.00 0.00 31.87 3.58
151 177 1.818674 CCACCTTCAAACATGGCTACC 59.181 52.381 0.00 0.00 0.00 3.18
152 178 1.818674 CACCTTCAAACATGGCTACCC 59.181 52.381 0.00 0.00 0.00 3.69
177 203 4.981674 TGCTTGACGATTGATTCCAAAAAC 59.018 37.500 0.00 0.00 35.67 2.43
205 231 3.575965 AAATTGGTTGCCTGACGATTC 57.424 42.857 0.00 0.00 0.00 2.52
206 232 1.463674 ATTGGTTGCCTGACGATTCC 58.536 50.000 0.00 0.00 0.00 3.01
207 233 0.109532 TTGGTTGCCTGACGATTCCA 59.890 50.000 0.00 0.00 0.00 3.53
208 234 0.109532 TGGTTGCCTGACGATTCCAA 59.890 50.000 0.00 0.00 0.00 3.53
209 235 0.521735 GGTTGCCTGACGATTCCAAC 59.478 55.000 0.00 0.00 36.09 3.77
210 236 0.521735 GTTGCCTGACGATTCCAACC 59.478 55.000 0.00 0.00 31.96 3.77
211 237 0.109532 TTGCCTGACGATTCCAACCA 59.890 50.000 0.00 0.00 0.00 3.67
212 238 0.109532 TGCCTGACGATTCCAACCAA 59.890 50.000 0.00 0.00 0.00 3.67
213 239 1.271871 TGCCTGACGATTCCAACCAAT 60.272 47.619 0.00 0.00 0.00 3.16
214 240 2.026729 TGCCTGACGATTCCAACCAATA 60.027 45.455 0.00 0.00 0.00 1.90
215 241 3.013921 GCCTGACGATTCCAACCAATAA 58.986 45.455 0.00 0.00 0.00 1.40
216 242 3.632145 GCCTGACGATTCCAACCAATAAT 59.368 43.478 0.00 0.00 0.00 1.28
217 243 4.819630 GCCTGACGATTCCAACCAATAATA 59.180 41.667 0.00 0.00 0.00 0.98
218 244 5.473504 GCCTGACGATTCCAACCAATAATAT 59.526 40.000 0.00 0.00 0.00 1.28
219 245 6.653320 GCCTGACGATTCCAACCAATAATATA 59.347 38.462 0.00 0.00 0.00 0.86
220 246 7.336931 GCCTGACGATTCCAACCAATAATATAT 59.663 37.037 0.00 0.00 0.00 0.86
221 247 9.884636 CCTGACGATTCCAACCAATAATATATA 57.115 33.333 0.00 0.00 0.00 0.86
328 378 1.141881 CTAGGACGGCTCGTTGCAT 59.858 57.895 1.80 0.00 41.37 3.96
331 381 0.178068 AGGACGGCTCGTTGCATATT 59.822 50.000 1.80 0.00 41.37 1.28
332 382 0.304705 GGACGGCTCGTTGCATATTG 59.695 55.000 1.80 0.00 41.37 1.90
334 384 1.004927 GACGGCTCGTTGCATATTGAC 60.005 52.381 1.80 0.00 41.37 3.18
357 407 9.524106 TGACCTTCAATAACTTATATGTACGTG 57.476 33.333 0.00 0.00 0.00 4.49
358 408 9.740239 GACCTTCAATAACTTATATGTACGTGA 57.260 33.333 0.00 0.00 0.00 4.35
368 418 9.871238 AACTTATATGTACGTGATGTCTTCTTT 57.129 29.630 0.00 0.00 0.00 2.52
373 423 6.912203 TGTACGTGATGTCTTCTTTTCAAA 57.088 33.333 0.00 0.00 0.00 2.69
380 430 8.843733 CGTGATGTCTTCTTTTCAAAATGTATG 58.156 33.333 0.00 0.00 0.00 2.39
383 433 9.132521 GATGTCTTCTTTTCAAAATGTATGGTG 57.867 33.333 0.00 0.00 0.00 4.17
412 463 1.652012 CGAGGCCGTTTTTCAGCAA 59.348 52.632 0.00 0.00 0.00 3.91
413 464 0.660300 CGAGGCCGTTTTTCAGCAAC 60.660 55.000 0.00 0.00 0.00 4.17
425 476 0.817634 TCAGCAACTTGGGAACACCG 60.818 55.000 0.00 0.00 44.64 4.94
435 486 1.202463 TGGGAACACCGCACATTTTTG 60.202 47.619 0.00 0.00 44.64 2.44
441 492 2.582493 CCGCACATTTTTGGGGCCT 61.582 57.895 0.84 0.00 42.16 5.19
442 493 1.254284 CCGCACATTTTTGGGGCCTA 61.254 55.000 0.84 0.00 42.16 3.93
443 494 0.108851 CGCACATTTTTGGGGCCTAC 60.109 55.000 0.84 0.00 0.00 3.18
444 495 1.266178 GCACATTTTTGGGGCCTACT 58.734 50.000 0.84 0.00 0.00 2.57
445 496 2.452505 GCACATTTTTGGGGCCTACTA 58.547 47.619 0.84 0.00 0.00 1.82
462 515 5.587289 CCTACTAAATCACAGAGCTCACTC 58.413 45.833 17.77 0.00 43.82 3.51
479 532 1.000274 ACTCGCAAATCAAAAGCACCC 60.000 47.619 0.00 0.00 0.00 4.61
485 538 1.039856 AATCAAAAGCACCCGCAACT 58.960 45.000 0.00 0.00 42.27 3.16
486 539 1.904287 ATCAAAAGCACCCGCAACTA 58.096 45.000 0.00 0.00 42.27 2.24
502 555 5.794945 CCGCAACTATATGTTTGTTCTGTTG 59.205 40.000 0.00 0.00 36.63 3.33
543 601 1.337728 TGTCAACATGCCACGTAGAGG 60.338 52.381 0.00 0.00 42.66 3.69
547 605 2.811431 CAACATGCCACGTAGAGGAAAA 59.189 45.455 0.00 0.00 42.26 2.29
553 611 2.737252 GCCACGTAGAGGAAAACAAGAG 59.263 50.000 0.00 0.00 42.26 2.85
559 617 5.048573 ACGTAGAGGAAAACAAGAGAGAGAC 60.049 44.000 0.00 0.00 0.00 3.36
575 633 2.628178 AGAGACGATCCATTTGCCGATA 59.372 45.455 0.00 0.00 0.00 2.92
591 649 1.787155 CGATATGCTGCCACGAAGTAC 59.213 52.381 0.00 0.00 41.61 2.73
607 665 4.673061 CGAAGTACACACTCCTCTCATGTC 60.673 50.000 0.00 0.00 32.29 3.06
610 668 1.620819 ACACACTCCTCTCATGTCACC 59.379 52.381 0.00 0.00 0.00 4.02
615 673 3.750130 CACTCCTCTCATGTCACCAAAAG 59.250 47.826 0.00 0.00 0.00 2.27
626 684 2.609002 GTCACCAAAAGCTTGCAAAAGG 59.391 45.455 0.00 0.00 0.00 3.11
635 693 1.472480 GCTTGCAAAAGGCTTCGGATA 59.528 47.619 0.00 0.00 45.15 2.59
638 699 1.466950 TGCAAAAGGCTTCGGATAACG 59.533 47.619 0.00 0.00 45.15 3.18
653 714 4.204573 CGGATAACGAAGTGAAAGACGATC 59.795 45.833 0.00 0.00 45.00 3.69
657 718 2.557056 ACGAAGTGAAAGACGATCCAGA 59.443 45.455 0.00 0.00 42.51 3.86
658 719 3.193691 ACGAAGTGAAAGACGATCCAGAT 59.806 43.478 0.00 0.00 42.51 2.90
659 720 3.794028 CGAAGTGAAAGACGATCCAGATC 59.206 47.826 0.00 0.00 34.56 2.75
661 722 4.116747 AGTGAAAGACGATCCAGATCAC 57.883 45.455 8.31 0.00 37.69 3.06
662 723 3.511540 AGTGAAAGACGATCCAGATCACA 59.488 43.478 8.31 0.00 38.46 3.58
663 724 4.021104 AGTGAAAGACGATCCAGATCACAA 60.021 41.667 8.31 0.00 38.46 3.33
664 725 4.872691 GTGAAAGACGATCCAGATCACAAT 59.127 41.667 8.31 0.00 37.69 2.71
666 727 5.582269 TGAAAGACGATCCAGATCACAATTC 59.418 40.000 8.31 7.17 37.69 2.17
667 728 4.065321 AGACGATCCAGATCACAATTCC 57.935 45.455 8.31 0.00 37.69 3.01
668 729 3.452264 AGACGATCCAGATCACAATTCCA 59.548 43.478 8.31 0.00 37.69 3.53
669 730 3.801698 ACGATCCAGATCACAATTCCAG 58.198 45.455 8.31 0.00 37.69 3.86
671 732 4.405680 ACGATCCAGATCACAATTCCAGTA 59.594 41.667 8.31 0.00 37.69 2.74
672 733 5.104941 ACGATCCAGATCACAATTCCAGTAA 60.105 40.000 8.31 0.00 37.69 2.24
673 734 5.817296 CGATCCAGATCACAATTCCAGTAAA 59.183 40.000 8.31 0.00 37.69 2.01
675 736 6.817765 TCCAGATCACAATTCCAGTAAAAC 57.182 37.500 0.00 0.00 0.00 2.43
676 737 6.303054 TCCAGATCACAATTCCAGTAAAACA 58.697 36.000 0.00 0.00 0.00 2.83
677 738 6.206634 TCCAGATCACAATTCCAGTAAAACAC 59.793 38.462 0.00 0.00 0.00 3.32
679 740 5.995282 AGATCACAATTCCAGTAAAACACGA 59.005 36.000 0.00 0.00 0.00 4.35
680 741 6.485313 AGATCACAATTCCAGTAAAACACGAA 59.515 34.615 0.00 0.00 0.00 3.85
681 742 6.627395 TCACAATTCCAGTAAAACACGAAT 57.373 33.333 0.00 0.00 0.00 3.34
682 743 6.664515 TCACAATTCCAGTAAAACACGAATC 58.335 36.000 0.00 0.00 0.00 2.52
683 744 6.485313 TCACAATTCCAGTAAAACACGAATCT 59.515 34.615 0.00 0.00 0.00 2.40
684 745 6.797033 CACAATTCCAGTAAAACACGAATCTC 59.203 38.462 0.00 0.00 0.00 2.75
685 746 6.485313 ACAATTCCAGTAAAACACGAATCTCA 59.515 34.615 0.00 0.00 0.00 3.27
686 747 6.727824 ATTCCAGTAAAACACGAATCTCAG 57.272 37.500 0.00 0.00 0.00 3.35
687 748 5.209818 TCCAGTAAAACACGAATCTCAGT 57.790 39.130 0.00 0.00 0.00 3.41
689 750 6.154445 TCCAGTAAAACACGAATCTCAGTAC 58.846 40.000 0.00 0.00 0.00 2.73
690 751 5.060569 CCAGTAAAACACGAATCTCAGTACG 59.939 44.000 0.00 0.00 0.00 3.67
691 752 4.620184 AGTAAAACACGAATCTCAGTACGC 59.380 41.667 0.00 0.00 0.00 4.42
692 753 3.299340 AAACACGAATCTCAGTACGCT 57.701 42.857 0.00 0.00 0.00 5.07
693 754 2.546195 ACACGAATCTCAGTACGCTC 57.454 50.000 0.00 0.00 0.00 5.03
694 755 2.085320 ACACGAATCTCAGTACGCTCT 58.915 47.619 0.00 0.00 0.00 4.09
695 756 2.488545 ACACGAATCTCAGTACGCTCTT 59.511 45.455 0.00 0.00 0.00 2.85
696 757 3.102276 CACGAATCTCAGTACGCTCTTC 58.898 50.000 0.00 0.00 0.00 2.87
697 758 3.011119 ACGAATCTCAGTACGCTCTTCT 58.989 45.455 0.00 0.00 0.00 2.85
698 759 3.181505 ACGAATCTCAGTACGCTCTTCTG 60.182 47.826 0.00 0.00 0.00 3.02
699 760 2.861462 ATCTCAGTACGCTCTTCTGC 57.139 50.000 0.00 0.00 0.00 4.26
700 761 1.827681 TCTCAGTACGCTCTTCTGCT 58.172 50.000 0.00 0.00 0.00 4.24
701 762 1.740585 TCTCAGTACGCTCTTCTGCTC 59.259 52.381 0.00 0.00 0.00 4.26
702 763 0.811915 TCAGTACGCTCTTCTGCTCC 59.188 55.000 0.00 0.00 0.00 4.70
703 764 0.814457 CAGTACGCTCTTCTGCTCCT 59.186 55.000 0.00 0.00 0.00 3.69
705 766 2.018515 AGTACGCTCTTCTGCTCCTAC 58.981 52.381 0.00 0.00 0.00 3.18
706 767 1.015109 TACGCTCTTCTGCTCCTACG 58.985 55.000 0.00 0.00 0.00 3.51
707 768 0.961358 ACGCTCTTCTGCTCCTACGT 60.961 55.000 0.00 0.00 0.00 3.57
709 770 1.268133 CGCTCTTCTGCTCCTACGTAC 60.268 57.143 0.00 0.00 0.00 3.67
710 771 1.743958 GCTCTTCTGCTCCTACGTACA 59.256 52.381 0.00 0.00 0.00 2.90
711 772 2.163815 GCTCTTCTGCTCCTACGTACAA 59.836 50.000 0.00 0.00 0.00 2.41
712 773 3.181485 GCTCTTCTGCTCCTACGTACAAT 60.181 47.826 0.00 0.00 0.00 2.71
713 774 4.355437 CTCTTCTGCTCCTACGTACAATG 58.645 47.826 0.00 0.00 0.00 2.82
714 775 3.762288 TCTTCTGCTCCTACGTACAATGT 59.238 43.478 0.00 0.00 0.00 2.71
716 777 4.530710 TCTGCTCCTACGTACAATGTTT 57.469 40.909 0.00 0.00 0.00 2.83
717 778 4.242475 TCTGCTCCTACGTACAATGTTTG 58.758 43.478 0.00 0.00 0.00 2.93
721 2456 4.435651 GCTCCTACGTACAATGTTTGAAGC 60.436 45.833 0.00 0.00 0.00 3.86
744 2479 2.048222 TCCGGCGCAGAGTTTCAG 60.048 61.111 10.83 0.00 0.00 3.02
746 2481 2.383527 CCGGCGCAGAGTTTCAGAC 61.384 63.158 10.83 0.00 0.00 3.51
749 2484 0.944311 GGCGCAGAGTTTCAGACGAA 60.944 55.000 10.83 0.00 0.00 3.85
796 2531 2.846665 AAGAGAGAGAAGGGGAGAGG 57.153 55.000 0.00 0.00 0.00 3.69
808 2543 1.228552 GGAGAGGGTTTGCTTGCCA 60.229 57.895 0.00 0.00 0.00 4.92
809 2544 0.613012 GGAGAGGGTTTGCTTGCCAT 60.613 55.000 0.00 0.00 0.00 4.40
813 2548 2.037641 AGAGGGTTTGCTTGCCATTTTC 59.962 45.455 0.00 0.00 0.00 2.29
814 2549 2.037641 GAGGGTTTGCTTGCCATTTTCT 59.962 45.455 0.00 0.00 0.00 2.52
837 2572 0.936691 AATCCTCCCCAAATCCCCTG 59.063 55.000 0.00 0.00 0.00 4.45
844 2579 1.076777 CCAAATCCCCTGGACGCAT 60.077 57.895 0.00 0.00 35.85 4.73
920 2667 3.583086 GCATAAACGCCCGCCTCC 61.583 66.667 0.00 0.00 0.00 4.30
1203 2966 0.337082 TCTGTATCCCTCGTTCCCCA 59.663 55.000 0.00 0.00 0.00 4.96
1225 2989 3.437795 GGCTTCTCCGTCGACCGA 61.438 66.667 10.58 8.28 39.56 4.69
1226 2990 2.772691 GGCTTCTCCGTCGACCGAT 61.773 63.158 10.58 0.00 39.56 4.18
1227 2991 1.442526 GGCTTCTCCGTCGACCGATA 61.443 60.000 10.58 0.00 39.56 2.92
1269 3033 5.778750 TGACCCGTTTTTATTTGGGGATTAA 59.221 36.000 0.64 0.00 46.38 1.40
1460 3232 1.919240 TCTACAAGCTCTGGGACGAA 58.081 50.000 0.00 0.00 0.00 3.85
1483 3255 1.282875 GCAAGGTCCGTTTGCTGAC 59.717 57.895 8.28 0.00 45.64 3.51
1500 3272 2.609459 CTGACGTTTCTGCTCTTGTGTT 59.391 45.455 0.00 0.00 0.00 3.32
1508 3280 1.002033 CTGCTCTTGTGTTGGTGCTTC 60.002 52.381 0.00 0.00 0.00 3.86
1586 3358 1.879380 CGGTTGCTTGGAATCTGTTGA 59.121 47.619 0.00 0.00 0.00 3.18
1645 3428 4.746702 GCATATTCCCTTGCAACCTAGCTA 60.747 45.833 0.00 0.00 38.72 3.32
1653 3436 0.462789 GCAACCTAGCTAGCCCGTTA 59.537 55.000 15.74 0.00 0.00 3.18
1711 3495 5.060446 CGGCATTTAACCTGAAATTTTCGTC 59.940 40.000 4.76 0.00 0.00 4.20
1716 3500 4.419522 AACCTGAAATTTTCGTCGGATG 57.580 40.909 14.87 0.00 0.00 3.51
1759 3543 4.631813 GCAGACGGAACTGATCTTGTTTAT 59.368 41.667 9.93 0.00 39.94 1.40
1809 3593 4.367450 GAGTCCTAGCAGAAGCATGTAAG 58.633 47.826 0.00 0.00 45.49 2.34
1840 3624 6.773200 AGCCCCTCTATTTATTTGCTAGAAAC 59.227 38.462 0.00 0.00 0.00 2.78
1881 3665 4.157656 TGCTTACCTGACCATAACAATTGC 59.842 41.667 5.05 0.00 0.00 3.56
1902 3686 6.441093 TGCTCAAATGGAAGTGATTACATC 57.559 37.500 0.00 0.00 0.00 3.06
1903 3687 5.945191 TGCTCAAATGGAAGTGATTACATCA 59.055 36.000 0.00 0.00 36.84 3.07
1948 3732 4.034048 CCGTGTGCTTGTACATAGGATTTC 59.966 45.833 0.00 0.00 34.94 2.17
1952 3736 2.221055 GCTTGTACATAGGATTTCGCCG 59.779 50.000 0.00 0.00 0.00 6.46
2004 3788 7.120726 TGCTTATGCATAATGATGATTCAGGAG 59.879 37.037 19.17 4.02 45.31 3.69
2154 3938 0.611896 AGAAACGGGCAAGGAATGGG 60.612 55.000 0.00 0.00 0.00 4.00
2432 4216 1.701847 AGAACCCAGCACTTCATCTGT 59.298 47.619 0.00 0.00 0.00 3.41
2497 4281 4.246458 GACTGATGCGGACTTTAGTTCTT 58.754 43.478 0.00 0.00 0.00 2.52
2625 4409 5.957842 TTCACATACAAAACCTGATGTCC 57.042 39.130 0.00 0.00 30.13 4.02
2628 4412 4.518590 CACATACAAAACCTGATGTCCACA 59.481 41.667 0.00 0.00 30.13 4.17
2630 4414 6.374053 CACATACAAAACCTGATGTCCACATA 59.626 38.462 0.00 0.00 36.57 2.29
2632 4416 4.724399 ACAAAACCTGATGTCCACATACA 58.276 39.130 0.00 0.00 36.57 2.29
2679 4463 9.383519 CTAGGCACAAATTCTCTTTTATACTCA 57.616 33.333 0.00 0.00 0.00 3.41
2741 4532 4.033587 GTCTTTGAAGTGCACTGAACGTAA 59.966 41.667 22.49 11.69 0.00 3.18
2794 4585 6.535508 GTGAGTCCATATCAAAGTGGTACTTC 59.464 42.308 0.00 0.00 37.47 3.01
2875 4666 4.079958 ACTTGGAACGCCCTAGGATAAATT 60.080 41.667 11.48 0.00 41.31 1.82
2876 4667 3.815809 TGGAACGCCCTAGGATAAATTG 58.184 45.455 11.48 0.00 35.38 2.32
2877 4668 3.456644 TGGAACGCCCTAGGATAAATTGA 59.543 43.478 11.48 0.00 35.38 2.57
2878 4669 4.104102 TGGAACGCCCTAGGATAAATTGAT 59.896 41.667 11.48 0.00 35.38 2.57
2879 4670 5.070685 GGAACGCCCTAGGATAAATTGATT 58.929 41.667 11.48 0.00 0.00 2.57
2880 4671 6.183361 TGGAACGCCCTAGGATAAATTGATTA 60.183 38.462 11.48 0.00 35.38 1.75
2881 4672 6.713450 GGAACGCCCTAGGATAAATTGATTAA 59.287 38.462 11.48 0.00 0.00 1.40
2882 4673 7.393515 GGAACGCCCTAGGATAAATTGATTAAT 59.606 37.037 11.48 0.00 0.00 1.40
2964 4755 5.538877 TCTCATCCTTACCTACCTTTGGAT 58.461 41.667 0.00 0.00 34.98 3.41
3005 4796 5.584649 TCGCTTTACAAATGGACTCCTTATG 59.415 40.000 0.00 0.00 0.00 1.90
3006 4797 5.584649 CGCTTTACAAATGGACTCCTTATGA 59.415 40.000 0.00 0.00 0.00 2.15
3007 4798 6.260936 CGCTTTACAAATGGACTCCTTATGAT 59.739 38.462 0.00 0.00 0.00 2.45
3008 4799 7.441157 CGCTTTACAAATGGACTCCTTATGATA 59.559 37.037 0.00 0.00 0.00 2.15
3009 4800 9.289782 GCTTTACAAATGGACTCCTTATGATAT 57.710 33.333 0.00 0.00 0.00 1.63
3013 4804 8.915057 ACAAATGGACTCCTTATGATATTCTG 57.085 34.615 0.00 0.00 0.00 3.02
3014 4805 8.717717 ACAAATGGACTCCTTATGATATTCTGA 58.282 33.333 0.00 0.00 0.00 3.27
3015 4806 9.565090 CAAATGGACTCCTTATGATATTCTGAA 57.435 33.333 0.00 0.00 0.00 3.02
3016 4807 9.790344 AAATGGACTCCTTATGATATTCTGAAG 57.210 33.333 0.00 0.00 0.00 3.02
3017 4808 6.763355 TGGACTCCTTATGATATTCTGAAGC 58.237 40.000 0.00 0.00 0.00 3.86
3018 4809 6.169800 GGACTCCTTATGATATTCTGAAGCC 58.830 44.000 0.00 0.00 0.00 4.35
3019 4810 6.239714 GGACTCCTTATGATATTCTGAAGCCA 60.240 42.308 0.00 0.00 0.00 4.75
3020 4811 6.529220 ACTCCTTATGATATTCTGAAGCCAC 58.471 40.000 0.00 0.00 0.00 5.01
3021 4812 6.100279 ACTCCTTATGATATTCTGAAGCCACA 59.900 38.462 0.00 0.00 0.00 4.17
3022 4813 7.083062 TCCTTATGATATTCTGAAGCCACAT 57.917 36.000 0.00 2.59 0.00 3.21
3023 4814 7.520798 TCCTTATGATATTCTGAAGCCACATT 58.479 34.615 0.00 0.00 0.00 2.71
3024 4815 8.000709 TCCTTATGATATTCTGAAGCCACATTT 58.999 33.333 0.00 0.00 0.00 2.32
3025 4816 8.080417 CCTTATGATATTCTGAAGCCACATTTG 58.920 37.037 0.00 0.00 0.00 2.32
3026 4817 5.252969 TGATATTCTGAAGCCACATTTGC 57.747 39.130 0.00 0.00 0.00 3.68
3027 4818 4.705991 TGATATTCTGAAGCCACATTTGCA 59.294 37.500 0.00 0.00 0.00 4.08
3028 4819 5.185442 TGATATTCTGAAGCCACATTTGCAA 59.815 36.000 0.00 0.00 0.00 4.08
3029 4820 2.798976 TCTGAAGCCACATTTGCAAC 57.201 45.000 0.00 0.00 0.00 4.17
3030 4821 2.309613 TCTGAAGCCACATTTGCAACT 58.690 42.857 0.00 0.00 0.00 3.16
3031 4822 2.694628 TCTGAAGCCACATTTGCAACTT 59.305 40.909 0.00 0.00 0.00 2.66
3032 4823 2.798283 CTGAAGCCACATTTGCAACTTG 59.202 45.455 0.00 2.46 0.00 3.16
3033 4824 1.528161 GAAGCCACATTTGCAACTTGC 59.472 47.619 6.82 6.82 45.29 4.01
3057 4848 8.719478 GCATTTTGATGCATATGTAGTTACTC 57.281 34.615 0.00 0.00 46.25 2.59
3058 4849 8.562892 GCATTTTGATGCATATGTAGTTACTCT 58.437 33.333 0.00 0.00 46.25 3.24
3063 4854 8.437360 TGATGCATATGTAGTTACTCTTTTGG 57.563 34.615 0.00 0.00 0.00 3.28
3064 4855 8.264347 TGATGCATATGTAGTTACTCTTTTGGA 58.736 33.333 0.00 0.00 0.00 3.53
3065 4856 7.843490 TGCATATGTAGTTACTCTTTTGGAC 57.157 36.000 4.29 0.00 0.00 4.02
3066 4857 7.620880 TGCATATGTAGTTACTCTTTTGGACT 58.379 34.615 4.29 0.00 0.00 3.85
3067 4858 8.100791 TGCATATGTAGTTACTCTTTTGGACTT 58.899 33.333 4.29 0.00 0.00 3.01
3068 4859 8.391106 GCATATGTAGTTACTCTTTTGGACTTG 58.609 37.037 4.29 0.00 0.00 3.16
3069 4860 9.436957 CATATGTAGTTACTCTTTTGGACTTGT 57.563 33.333 0.00 0.00 0.00 3.16
3070 4861 7.730364 ATGTAGTTACTCTTTTGGACTTGTG 57.270 36.000 0.00 0.00 0.00 3.33
3071 4862 6.053005 TGTAGTTACTCTTTTGGACTTGTGG 58.947 40.000 0.00 0.00 0.00 4.17
3072 4863 5.112129 AGTTACTCTTTTGGACTTGTGGT 57.888 39.130 0.00 0.00 0.00 4.16
3073 4864 4.881850 AGTTACTCTTTTGGACTTGTGGTG 59.118 41.667 0.00 0.00 0.00 4.17
3074 4865 3.644966 ACTCTTTTGGACTTGTGGTGA 57.355 42.857 0.00 0.00 0.00 4.02
3075 4866 3.279434 ACTCTTTTGGACTTGTGGTGAC 58.721 45.455 0.00 0.00 0.00 3.67
3076 4867 3.278574 CTCTTTTGGACTTGTGGTGACA 58.721 45.455 0.00 0.00 38.70 3.58
3077 4868 3.278574 TCTTTTGGACTTGTGGTGACAG 58.721 45.455 0.00 0.00 44.46 3.51
3078 4869 2.799126 TTTGGACTTGTGGTGACAGT 57.201 45.000 0.00 0.00 44.46 3.55
3079 4870 3.916359 TTTGGACTTGTGGTGACAGTA 57.084 42.857 0.00 0.00 44.46 2.74
3080 4871 3.469008 TTGGACTTGTGGTGACAGTAG 57.531 47.619 0.00 0.00 44.46 2.57
3081 4872 2.394632 TGGACTTGTGGTGACAGTAGT 58.605 47.619 0.00 0.00 44.46 2.73
3082 4873 2.769663 TGGACTTGTGGTGACAGTAGTT 59.230 45.455 0.00 0.00 44.46 2.24
3083 4874 3.181469 TGGACTTGTGGTGACAGTAGTTC 60.181 47.826 0.00 0.00 44.46 3.01
3084 4875 3.050619 GACTTGTGGTGACAGTAGTTCG 58.949 50.000 0.00 0.00 44.46 3.95
3085 4876 1.792949 CTTGTGGTGACAGTAGTTCGC 59.207 52.381 0.00 0.00 44.46 4.70
3086 4877 1.037493 TGTGGTGACAGTAGTTCGCT 58.963 50.000 0.00 0.00 44.46 4.93
3087 4878 1.411246 TGTGGTGACAGTAGTTCGCTT 59.589 47.619 0.00 0.00 44.46 4.68
3088 4879 2.159014 TGTGGTGACAGTAGTTCGCTTT 60.159 45.455 0.00 0.00 44.46 3.51
3089 4880 3.068448 TGTGGTGACAGTAGTTCGCTTTA 59.932 43.478 0.00 0.00 44.46 1.85
3090 4881 3.427863 GTGGTGACAGTAGTTCGCTTTAC 59.572 47.826 0.00 0.00 44.46 2.01
3091 4882 3.068448 TGGTGACAGTAGTTCGCTTTACA 59.932 43.478 0.00 0.00 35.01 2.41
3092 4883 4.053295 GGTGACAGTAGTTCGCTTTACAA 58.947 43.478 0.00 0.00 0.00 2.41
3093 4884 4.508861 GGTGACAGTAGTTCGCTTTACAAA 59.491 41.667 0.00 0.00 0.00 2.83
3094 4885 5.178809 GGTGACAGTAGTTCGCTTTACAAAT 59.821 40.000 0.00 0.00 0.00 2.32
3095 4886 6.071463 GTGACAGTAGTTCGCTTTACAAATG 58.929 40.000 0.00 0.00 0.00 2.32
3096 4887 5.178623 TGACAGTAGTTCGCTTTACAAATGG 59.821 40.000 0.00 0.00 0.00 3.16
3097 4888 5.302360 ACAGTAGTTCGCTTTACAAATGGA 58.698 37.500 0.00 0.00 0.00 3.41
3098 4889 5.178809 ACAGTAGTTCGCTTTACAAATGGAC 59.821 40.000 0.00 0.00 0.00 4.02
3099 4890 5.408604 CAGTAGTTCGCTTTACAAATGGACT 59.591 40.000 0.00 0.00 0.00 3.85
3100 4891 5.638234 AGTAGTTCGCTTTACAAATGGACTC 59.362 40.000 0.00 0.00 0.00 3.36
3101 4892 3.751698 AGTTCGCTTTACAAATGGACTCC 59.248 43.478 0.00 0.00 0.00 3.85
3102 4893 3.695830 TCGCTTTACAAATGGACTCCT 57.304 42.857 0.00 0.00 0.00 3.69
3103 4894 4.015872 TCGCTTTACAAATGGACTCCTT 57.984 40.909 0.00 0.00 0.00 3.36
3104 4895 5.155278 TCGCTTTACAAATGGACTCCTTA 57.845 39.130 0.00 0.00 0.00 2.69
3105 4896 5.741011 TCGCTTTACAAATGGACTCCTTAT 58.259 37.500 0.00 0.00 0.00 1.73
3227 5018 8.147244 ACAGTGTATATTTAACTCCCTTCACT 57.853 34.615 0.00 0.00 33.62 3.41
3228 5019 9.263446 ACAGTGTATATTTAACTCCCTTCACTA 57.737 33.333 0.00 0.00 32.42 2.74
3425 5222 2.444706 CTCCCGGGAGCATCTGGA 60.445 66.667 36.90 4.87 35.31 3.86
3435 5247 0.694771 AGCATCTGGACCACATGTGT 59.305 50.000 23.79 12.31 0.00 3.72
3439 5251 1.127343 TCTGGACCACATGTGTGTCA 58.873 50.000 31.11 21.83 44.21 3.58
3654 5468 4.974721 AACCCAAGCCAGCCACCG 62.975 66.667 0.00 0.00 0.00 4.94
3872 5686 7.306925 GCATAAACTTTAAGGGGAAACAAAACG 60.307 37.037 0.00 0.00 0.00 3.60
3968 5782 7.093988 CCACCCAAAATGATACACTTCAACATA 60.094 37.037 0.00 0.00 0.00 2.29
4020 5836 5.230942 GTCTTCTTCTTCGTCCTTCATGAA 58.769 41.667 8.12 8.12 0.00 2.57
4052 5868 1.300963 GCCCTGTTCTCCTGCATCA 59.699 57.895 0.00 0.00 0.00 3.07
4056 5872 2.356432 CCCTGTTCTCCTGCATCATCAA 60.356 50.000 0.00 0.00 0.00 2.57
4111 5927 1.051008 ATCTGGCTCTGTCACACACA 58.949 50.000 0.00 0.00 0.00 3.72
4115 5931 3.070878 TCTGGCTCTGTCACACACAATAA 59.929 43.478 0.00 0.00 33.31 1.40
4121 5937 5.408299 GCTCTGTCACACACAATAACACATA 59.592 40.000 0.00 0.00 33.31 2.29
4127 5943 6.307800 GTCACACACAATAACACATATTTGGC 59.692 38.462 0.00 0.00 31.69 4.52
4224 6040 3.576550 GACAGACTCTGAACTTTCTCCCT 59.423 47.826 13.25 0.00 35.18 4.20
4244 6060 5.706369 TCCCTCGTGTATTCTCTAAGATAGC 59.294 44.000 0.00 0.00 0.00 2.97
4284 6100 0.329261 TCTTCCCTGGTCAAGCATGG 59.671 55.000 0.00 0.00 0.00 3.66
4345 6162 1.951602 GTTACCCCAGTCAACCACAAC 59.048 52.381 0.00 0.00 0.00 3.32
4351 6176 2.422235 CCCAGTCAACCACAACTAACCA 60.422 50.000 0.00 0.00 0.00 3.67
4352 6177 3.283751 CCAGTCAACCACAACTAACCAA 58.716 45.455 0.00 0.00 0.00 3.67
4448 8554 6.683974 AAATAGATTGCAGAATTACACGCT 57.316 33.333 0.00 0.00 0.00 5.07
4457 8563 4.026475 GCAGAATTACACGCTGTACTCATC 60.026 45.833 0.00 0.00 31.69 2.92
4458 8564 4.205181 CAGAATTACACGCTGTACTCATCG 59.795 45.833 0.00 0.00 38.82 3.84
4459 8565 2.554806 TTACACGCTGTACTCATCGG 57.445 50.000 0.00 0.00 37.48 4.18
4507 8613 1.603739 GTCCAACCTGGGGCTTGTC 60.604 63.158 0.00 0.00 38.32 3.18
4518 8624 1.134946 GGGGCTTGTCGATCCATTTTG 59.865 52.381 0.00 0.00 0.00 2.44
4619 8725 2.436824 GGCGTCCCCTTTCTCAGC 60.437 66.667 0.00 0.00 0.00 4.26
4628 8734 0.036010 CCTTTCTCAGCCACATCCGT 60.036 55.000 0.00 0.00 0.00 4.69
4665 8771 5.411053 GCTCTTACTGAAATCAGAAGCTGTT 59.589 40.000 16.93 0.00 46.59 3.16
4687 8793 1.529226 CCAACCGGCATCAACACTTA 58.471 50.000 0.00 0.00 0.00 2.24
4695 8801 3.119884 CGGCATCAACACTTATTTGCTCA 60.120 43.478 0.00 0.00 0.00 4.26
4736 8842 0.541998 TGGACGAGACCATGACCACT 60.542 55.000 0.00 0.00 34.77 4.00
4788 8894 2.907892 TCATCCATCCCCATCCTAGAC 58.092 52.381 0.00 0.00 0.00 2.59
4791 8897 0.194587 CCATCCCCATCCTAGACCCT 59.805 60.000 0.00 0.00 0.00 4.34
4793 8899 1.150986 CATCCCCATCCTAGACCCTCT 59.849 57.143 0.00 0.00 0.00 3.69
4816 8922 2.224621 CCGGAATGCCCTATTGACTGAT 60.225 50.000 0.00 0.00 0.00 2.90
4826 8933 4.837298 CCCTATTGACTGATCTCCATCTCA 59.163 45.833 0.00 0.00 0.00 3.27
4838 8945 3.012518 CTCCATCTCACACCATTTCCAC 58.987 50.000 0.00 0.00 0.00 4.02
4890 8997 4.320870 AGTAAATCGGTAAACTGTGGGTG 58.679 43.478 0.00 0.00 0.00 4.61
4919 9026 3.192944 TCCAGAAATCAGATCCCCAACT 58.807 45.455 0.00 0.00 0.00 3.16
4964 9074 3.264450 CGGGATTTGGAGGATAAGGCTAT 59.736 47.826 0.00 0.00 0.00 2.97
4988 9098 1.329256 ACCTGTCGACTGCAGTTACT 58.671 50.000 22.65 4.42 32.41 2.24
4997 9107 3.010420 GACTGCAGTTACTGGGAATTCC 58.990 50.000 22.65 16.74 31.21 3.01
5007 9117 2.715624 GGAATTCCGTCGCCATGC 59.284 61.111 9.17 0.00 0.00 4.06
5033 9143 1.664965 GTCGCGGTGATCTATGCCC 60.665 63.158 6.13 0.00 0.00 5.36
5034 9144 2.131067 TCGCGGTGATCTATGCCCA 61.131 57.895 6.13 0.00 0.00 5.36
5037 9147 0.179045 GCGGTGATCTATGCCCAGTT 60.179 55.000 0.00 0.00 0.00 3.16
5142 9462 3.055240 CACTCCCTCTGCTGAGAAAATCT 60.055 47.826 21.10 0.00 42.73 2.40
5167 9487 2.027469 CAGTAGAACTAACCCCCACCAC 60.027 54.545 0.00 0.00 0.00 4.16
5356 9678 1.197910 GCGCCAGTGTATACTTCGTC 58.802 55.000 4.17 3.02 34.07 4.20
5402 9724 3.380995 TGTGCGGCACAGATCTCT 58.619 55.556 30.40 0.00 39.62 3.10
5405 9727 0.173481 GTGCGGCACAGATCTCTACA 59.827 55.000 27.10 0.00 34.08 2.74
5444 9766 1.057851 TTCCGGGTTCAACTGGACCT 61.058 55.000 0.00 0.00 45.36 3.85
5458 9780 2.520741 ACCTGGGTGCCAAAACGG 60.521 61.111 0.00 0.00 30.80 4.44
5467 9793 2.642700 CCAAAACGGCCCGAAGTG 59.357 61.111 11.71 3.74 0.00 3.16
5715 10054 2.386661 ACGCATCTTGGTCCTGTAAG 57.613 50.000 0.00 0.00 0.00 2.34
5839 10178 4.631813 ACGATTGACTTACATTGAAGGCTC 59.368 41.667 0.00 0.00 35.29 4.70
5890 10230 3.433615 GTCACAGGCATTCAGTGTTCTAC 59.566 47.826 0.00 0.00 34.94 2.59
5913 10253 3.685139 ATTTTCCGCTCTCTTCTGACA 57.315 42.857 0.00 0.00 0.00 3.58
5968 10308 5.208463 TCACCCAAAAATGGCTTCTTTAC 57.792 39.130 0.00 0.00 0.00 2.01
5998 10338 4.905429 ACTGCACAATACTACAATCACCA 58.095 39.130 0.00 0.00 0.00 4.17
6010 10350 7.502120 ACTACAATCACCAGATAATTGCATC 57.498 36.000 0.00 0.00 34.47 3.91
6073 10413 9.308318 GTGTTTTATTTTGCTTCTAACCTGAAA 57.692 29.630 0.00 0.00 0.00 2.69
6076 10416 8.532977 TTTATTTTGCTTCTAACCTGAAATGC 57.467 30.769 0.00 0.00 0.00 3.56
6087 10427 5.717038 AACCTGAAATGCTTTTGTTTTCG 57.283 34.783 1.76 0.00 33.15 3.46
6102 10442 1.933021 TTTCGGCCTCTCAGGAACTA 58.067 50.000 0.00 0.00 37.67 2.24
6105 10445 0.741915 CGGCCTCTCAGGAACTACTC 59.258 60.000 0.00 0.00 37.67 2.59
6106 10446 1.116308 GGCCTCTCAGGAACTACTCC 58.884 60.000 0.00 0.00 45.81 3.85
6128 10468 1.186200 TGCGAGAGGTGCATAGAGTT 58.814 50.000 0.00 0.00 37.44 3.01
6225 10565 3.880047 TGGAAGGTGGACTTATGTACG 57.120 47.619 0.00 0.00 40.21 3.67
6234 10574 6.261826 AGGTGGACTTATGTACGTACTCATAC 59.738 42.308 25.12 15.26 0.00 2.39
6251 10591 4.832248 TCATACCCAAAGCTGTAGACAAG 58.168 43.478 0.00 0.00 0.00 3.16
6282 10644 8.738645 TTTTTGTTGCATAAAATGGTTAACCT 57.261 26.923 24.78 7.74 36.82 3.50
6340 10702 1.497161 AGGGCGAGCCAAGTTACTAT 58.503 50.000 16.65 0.00 37.98 2.12
6341 10703 1.838077 AGGGCGAGCCAAGTTACTATT 59.162 47.619 16.65 0.00 37.98 1.73
6342 10704 3.036091 AGGGCGAGCCAAGTTACTATTA 58.964 45.455 16.65 0.00 37.98 0.98
6352 10714 7.736893 AGCCAAGTTACTATTACTGGATTAGG 58.263 38.462 4.38 0.00 0.00 2.69
6379 10741 8.594550 CCTAGGGTGTATAACATAAGCATAACT 58.405 37.037 0.00 0.00 0.00 2.24
6381 10743 8.677148 AGGGTGTATAACATAAGCATAACTTG 57.323 34.615 0.00 0.00 39.58 3.16
6462 10824 2.499289 AGCGATCTTCTCTTCATGTGGT 59.501 45.455 0.00 0.00 0.00 4.16
6609 10972 3.742327 CGCAGGAAGATTTAGCATCCAGA 60.742 47.826 0.00 0.00 34.30 3.86
6675 11038 2.216898 GAGCACTGAATCCTGTATGCC 58.783 52.381 0.00 0.00 0.00 4.40
6690 11053 3.423154 GCCTTGGTGACTTCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
6727 11091 4.744316 AACGTGGTCGGTCTTGTC 57.256 55.556 0.00 0.00 41.85 3.18
6728 11092 1.817881 AACGTGGTCGGTCTTGTCA 59.182 52.632 0.00 0.00 41.85 3.58
6729 11093 0.391597 AACGTGGTCGGTCTTGTCAT 59.608 50.000 0.00 0.00 41.85 3.06
6730 11094 0.038526 ACGTGGTCGGTCTTGTCATC 60.039 55.000 0.00 0.00 41.85 2.92
6789 11153 1.725641 TGCTATCACTGCCTTGTTCG 58.274 50.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.582636 ACAATGTATGTATAGTGGACCTGTG 58.417 40.000 0.00 0.00 41.63 3.66
1 2 6.808321 ACAATGTATGTATAGTGGACCTGT 57.192 37.500 0.00 0.00 41.63 4.00
2 3 7.500992 AGAACAATGTATGTATAGTGGACCTG 58.499 38.462 0.00 0.00 42.99 4.00
3 4 7.676683 AGAACAATGTATGTATAGTGGACCT 57.323 36.000 0.00 0.00 42.99 3.85
4 5 8.639761 ACTAGAACAATGTATGTATAGTGGACC 58.360 37.037 0.00 0.00 42.99 4.46
47 48 0.468226 TCCCGTCTGGACAATATGCC 59.532 55.000 1.63 0.00 38.61 4.40
58 59 5.584649 TGCAATAATAGTTTCTTCCCGTCTG 59.415 40.000 0.00 0.00 0.00 3.51
60 61 6.128117 TGTTGCAATAATAGTTTCTTCCCGTC 60.128 38.462 0.59 0.00 0.00 4.79
63 89 8.872845 CAAATGTTGCAATAATAGTTTCTTCCC 58.127 33.333 0.59 0.00 0.00 3.97
77 103 4.679373 TTGTGTACCCAAATGTTGCAAT 57.321 36.364 0.59 0.00 0.00 3.56
83 109 4.027437 ACCAGTTTTGTGTACCCAAATGT 58.973 39.130 4.29 0.00 34.50 2.71
100 126 3.066760 GCAAAGTAGCTCACAAAACCAGT 59.933 43.478 0.00 0.00 0.00 4.00
101 127 3.632189 GCAAAGTAGCTCACAAAACCAG 58.368 45.455 0.00 0.00 0.00 4.00
102 128 2.032799 CGCAAAGTAGCTCACAAAACCA 59.967 45.455 0.00 0.00 0.00 3.67
104 130 3.602390 TCGCAAAGTAGCTCACAAAAC 57.398 42.857 0.00 0.00 0.00 2.43
105 131 5.641636 TGATATCGCAAAGTAGCTCACAAAA 59.358 36.000 0.00 0.00 0.00 2.44
107 133 4.754322 TGATATCGCAAAGTAGCTCACAA 58.246 39.130 0.00 0.00 0.00 3.33
108 134 4.385358 TGATATCGCAAAGTAGCTCACA 57.615 40.909 0.00 0.00 0.00 3.58
109 135 4.387256 GGATGATATCGCAAAGTAGCTCAC 59.613 45.833 0.00 0.00 0.00 3.51
110 136 4.039124 TGGATGATATCGCAAAGTAGCTCA 59.961 41.667 0.00 0.00 0.00 4.26
144 170 1.003839 CGTCAAGCAAGGGTAGCCA 60.004 57.895 14.62 0.00 0.00 4.75
147 173 2.972625 TCAATCGTCAAGCAAGGGTAG 58.027 47.619 0.00 0.00 0.00 3.18
148 174 3.627395 ATCAATCGTCAAGCAAGGGTA 57.373 42.857 0.00 0.00 0.00 3.69
149 175 2.496899 ATCAATCGTCAAGCAAGGGT 57.503 45.000 0.00 0.00 0.00 4.34
150 176 2.098117 GGAATCAATCGTCAAGCAAGGG 59.902 50.000 0.00 0.00 0.00 3.95
151 177 2.749076 TGGAATCAATCGTCAAGCAAGG 59.251 45.455 0.00 0.00 0.00 3.61
152 178 4.424061 TTGGAATCAATCGTCAAGCAAG 57.576 40.909 0.00 0.00 0.00 4.01
188 214 0.109532 TGGAATCGTCAGGCAACCAA 59.890 50.000 0.00 0.00 37.17 3.67
245 281 4.446413 AATCCCACGGACGGCGTC 62.446 66.667 30.72 30.72 32.98 5.19
331 381 9.524106 CACGTACATATAAGTTATTGAAGGTCA 57.476 33.333 0.00 0.00 0.00 4.02
332 382 9.740239 TCACGTACATATAAGTTATTGAAGGTC 57.260 33.333 0.00 0.00 0.00 3.85
347 397 8.771920 TTGAAAAGAAGACATCACGTACATAT 57.228 30.769 0.00 0.00 0.00 1.78
352 402 7.925993 ACATTTTGAAAAGAAGACATCACGTA 58.074 30.769 0.00 0.00 0.00 3.57
353 403 6.795399 ACATTTTGAAAAGAAGACATCACGT 58.205 32.000 0.00 0.00 0.00 4.49
354 404 8.843733 CATACATTTTGAAAAGAAGACATCACG 58.156 33.333 0.00 0.00 0.00 4.35
355 405 9.132521 CCATACATTTTGAAAAGAAGACATCAC 57.867 33.333 0.00 0.00 0.00 3.06
356 406 8.859090 ACCATACATTTTGAAAAGAAGACATCA 58.141 29.630 0.00 0.00 0.00 3.07
357 407 9.132521 CACCATACATTTTGAAAAGAAGACATC 57.867 33.333 0.00 0.00 0.00 3.06
358 408 7.599998 GCACCATACATTTTGAAAAGAAGACAT 59.400 33.333 0.00 0.00 0.00 3.06
359 409 6.922957 GCACCATACATTTTGAAAAGAAGACA 59.077 34.615 0.00 0.00 0.00 3.41
360 410 6.922957 TGCACCATACATTTTGAAAAGAAGAC 59.077 34.615 0.00 0.00 0.00 3.01
361 411 7.048629 TGCACCATACATTTTGAAAAGAAGA 57.951 32.000 0.00 0.00 0.00 2.87
362 412 7.712264 TTGCACCATACATTTTGAAAAGAAG 57.288 32.000 0.00 0.00 0.00 2.85
363 413 8.674263 AATTGCACCATACATTTTGAAAAGAA 57.326 26.923 0.00 0.00 0.00 2.52
364 414 8.674263 AAATTGCACCATACATTTTGAAAAGA 57.326 26.923 0.00 0.00 0.00 2.52
365 415 9.733219 AAAAATTGCACCATACATTTTGAAAAG 57.267 25.926 5.52 0.00 0.00 2.27
412 463 0.467290 AATGTGCGGTGTTCCCAAGT 60.467 50.000 0.00 0.00 0.00 3.16
413 464 0.673437 AAATGTGCGGTGTTCCCAAG 59.327 50.000 0.00 0.00 0.00 3.61
425 476 1.266178 AGTAGGCCCCAAAAATGTGC 58.734 50.000 0.00 0.00 0.00 4.57
435 486 2.485657 GCTCTGTGATTTAGTAGGCCCC 60.486 54.545 0.00 0.00 0.00 5.80
439 490 5.587289 GAGTGAGCTCTGTGATTTAGTAGG 58.413 45.833 16.19 0.00 38.66 3.18
441 492 4.438880 GCGAGTGAGCTCTGTGATTTAGTA 60.439 45.833 16.19 0.00 39.53 1.82
442 493 3.674682 GCGAGTGAGCTCTGTGATTTAGT 60.675 47.826 16.19 0.00 39.53 2.24
443 494 2.857152 GCGAGTGAGCTCTGTGATTTAG 59.143 50.000 16.19 0.00 39.53 1.85
444 495 2.231235 TGCGAGTGAGCTCTGTGATTTA 59.769 45.455 16.19 0.00 39.53 1.40
445 496 1.001293 TGCGAGTGAGCTCTGTGATTT 59.999 47.619 16.19 0.00 39.53 2.17
462 515 1.616872 GCGGGTGCTTTTGATTTGCG 61.617 55.000 0.00 0.00 38.39 4.85
463 516 0.599728 TGCGGGTGCTTTTGATTTGC 60.600 50.000 0.00 0.00 43.34 3.68
479 532 6.837307 CAACAGAACAAACATATAGTTGCG 57.163 37.500 0.00 0.00 41.19 4.85
485 538 8.487313 AGATAACGCAACAGAACAAACATATA 57.513 30.769 0.00 0.00 0.00 0.86
486 539 7.334421 AGAGATAACGCAACAGAACAAACATAT 59.666 33.333 0.00 0.00 0.00 1.78
502 555 5.533482 ACATGGATGTTCTAGAGATAACGC 58.467 41.667 0.00 0.00 37.90 4.84
533 591 4.022242 TCTCTCTTGTTTTCCTCTACGTGG 60.022 45.833 0.00 0.00 0.00 4.94
543 601 4.810790 TGGATCGTCTCTCTCTTGTTTTC 58.189 43.478 0.00 0.00 0.00 2.29
547 605 4.753233 CAAATGGATCGTCTCTCTCTTGT 58.247 43.478 0.00 0.00 0.00 3.16
553 611 1.202417 TCGGCAAATGGATCGTCTCTC 60.202 52.381 0.00 0.00 0.00 3.20
559 617 2.079158 AGCATATCGGCAAATGGATCG 58.921 47.619 0.00 0.00 35.83 3.69
575 633 0.034756 TGTGTACTTCGTGGCAGCAT 59.965 50.000 0.00 0.00 0.00 3.79
591 649 1.620323 TGGTGACATGAGAGGAGTGTG 59.380 52.381 0.00 0.00 33.40 3.82
607 665 1.331447 GCCTTTTGCAAGCTTTTGGTG 59.669 47.619 0.00 0.00 40.77 4.17
610 668 2.033492 CGAAGCCTTTTGCAAGCTTTTG 60.033 45.455 21.18 14.72 44.83 2.44
615 673 0.244721 ATCCGAAGCCTTTTGCAAGC 59.755 50.000 0.00 0.00 44.83 4.01
635 693 3.005472 TCTGGATCGTCTTTCACTTCGTT 59.995 43.478 0.00 0.00 0.00 3.85
638 699 4.564769 GTGATCTGGATCGTCTTTCACTTC 59.435 45.833 6.17 0.00 40.63 3.01
649 710 3.801698 ACTGGAATTGTGATCTGGATCG 58.198 45.455 6.17 0.00 40.63 3.69
653 714 6.381801 GTGTTTTACTGGAATTGTGATCTGG 58.618 40.000 0.00 0.00 0.00 3.86
657 718 6.627395 TTCGTGTTTTACTGGAATTGTGAT 57.373 33.333 0.00 0.00 0.00 3.06
658 719 6.485313 AGATTCGTGTTTTACTGGAATTGTGA 59.515 34.615 0.00 0.00 0.00 3.58
659 720 6.668323 AGATTCGTGTTTTACTGGAATTGTG 58.332 36.000 0.00 0.00 0.00 3.33
661 722 6.898041 TGAGATTCGTGTTTTACTGGAATTG 58.102 36.000 0.00 0.00 0.00 2.32
662 723 6.710744 ACTGAGATTCGTGTTTTACTGGAATT 59.289 34.615 0.00 0.00 0.00 2.17
663 724 6.231211 ACTGAGATTCGTGTTTTACTGGAAT 58.769 36.000 0.00 0.00 0.00 3.01
664 725 5.607477 ACTGAGATTCGTGTTTTACTGGAA 58.393 37.500 0.00 0.00 0.00 3.53
666 727 5.060569 CGTACTGAGATTCGTGTTTTACTGG 59.939 44.000 0.00 0.00 0.00 4.00
667 728 5.442909 GCGTACTGAGATTCGTGTTTTACTG 60.443 44.000 0.00 0.00 0.00 2.74
668 729 4.620184 GCGTACTGAGATTCGTGTTTTACT 59.380 41.667 0.00 0.00 0.00 2.24
669 730 4.620184 AGCGTACTGAGATTCGTGTTTTAC 59.380 41.667 0.00 0.00 0.00 2.01
671 732 3.650139 AGCGTACTGAGATTCGTGTTTT 58.350 40.909 0.00 0.00 0.00 2.43
672 733 3.057456 AGAGCGTACTGAGATTCGTGTTT 60.057 43.478 0.00 0.00 0.00 2.83
673 734 2.488545 AGAGCGTACTGAGATTCGTGTT 59.511 45.455 0.00 0.00 0.00 3.32
675 736 2.834574 AGAGCGTACTGAGATTCGTG 57.165 50.000 0.00 0.00 0.00 4.35
676 737 3.011119 AGAAGAGCGTACTGAGATTCGT 58.989 45.455 0.00 0.00 0.00 3.85
677 738 3.358775 CAGAAGAGCGTACTGAGATTCG 58.641 50.000 0.00 0.00 34.07 3.34
679 740 2.757868 AGCAGAAGAGCGTACTGAGATT 59.242 45.455 0.00 0.00 40.15 2.40
680 741 2.357637 GAGCAGAAGAGCGTACTGAGAT 59.642 50.000 0.00 0.00 40.15 2.75
681 742 1.740585 GAGCAGAAGAGCGTACTGAGA 59.259 52.381 0.00 0.00 40.15 3.27
682 743 1.202245 GGAGCAGAAGAGCGTACTGAG 60.202 57.143 0.00 0.00 40.15 3.35
683 744 0.811915 GGAGCAGAAGAGCGTACTGA 59.188 55.000 0.00 0.00 40.15 3.41
684 745 0.814457 AGGAGCAGAAGAGCGTACTG 59.186 55.000 0.00 0.00 40.15 2.74
685 746 2.018515 GTAGGAGCAGAAGAGCGTACT 58.981 52.381 0.00 0.00 40.15 2.73
686 747 1.268133 CGTAGGAGCAGAAGAGCGTAC 60.268 57.143 0.00 0.00 40.15 3.67
687 748 1.015109 CGTAGGAGCAGAAGAGCGTA 58.985 55.000 0.00 0.00 40.15 4.42
689 750 1.015109 TACGTAGGAGCAGAAGAGCG 58.985 55.000 0.00 0.00 40.15 5.03
690 751 1.743958 TGTACGTAGGAGCAGAAGAGC 59.256 52.381 0.00 0.00 0.00 4.09
691 752 4.142359 ACATTGTACGTAGGAGCAGAAGAG 60.142 45.833 0.00 0.00 0.00 2.85
692 753 3.762288 ACATTGTACGTAGGAGCAGAAGA 59.238 43.478 0.00 0.00 0.00 2.87
693 754 4.111375 ACATTGTACGTAGGAGCAGAAG 57.889 45.455 0.00 0.00 0.00 2.85
694 755 4.530710 AACATTGTACGTAGGAGCAGAA 57.469 40.909 0.00 0.00 0.00 3.02
695 756 4.021807 TCAAACATTGTACGTAGGAGCAGA 60.022 41.667 0.00 0.00 0.00 4.26
696 757 4.242475 TCAAACATTGTACGTAGGAGCAG 58.758 43.478 0.00 0.00 0.00 4.24
697 758 4.260139 TCAAACATTGTACGTAGGAGCA 57.740 40.909 0.00 0.00 0.00 4.26
698 759 4.435651 GCTTCAAACATTGTACGTAGGAGC 60.436 45.833 0.00 0.00 0.00 4.70
699 760 4.929808 AGCTTCAAACATTGTACGTAGGAG 59.070 41.667 0.00 0.00 0.00 3.69
700 761 4.688879 CAGCTTCAAACATTGTACGTAGGA 59.311 41.667 0.00 0.00 0.00 2.94
701 762 4.688879 TCAGCTTCAAACATTGTACGTAGG 59.311 41.667 0.00 0.00 0.00 3.18
702 763 5.839262 TCAGCTTCAAACATTGTACGTAG 57.161 39.130 0.00 0.00 0.00 3.51
703 764 5.756347 AGTTCAGCTTCAAACATTGTACGTA 59.244 36.000 0.00 0.00 0.00 3.57
705 766 5.095691 AGTTCAGCTTCAAACATTGTACG 57.904 39.130 6.26 0.00 0.00 3.67
706 767 5.452777 GGAGTTCAGCTTCAAACATTGTAC 58.547 41.667 6.26 0.00 0.00 2.90
707 768 4.213270 CGGAGTTCAGCTTCAAACATTGTA 59.787 41.667 6.26 0.00 0.00 2.41
709 770 3.558505 CGGAGTTCAGCTTCAAACATTG 58.441 45.455 6.26 0.00 0.00 2.82
710 771 2.554032 CCGGAGTTCAGCTTCAAACATT 59.446 45.455 0.00 0.00 0.00 2.71
711 772 2.154462 CCGGAGTTCAGCTTCAAACAT 58.846 47.619 0.00 0.00 0.00 2.71
712 773 1.593196 CCGGAGTTCAGCTTCAAACA 58.407 50.000 0.00 0.00 0.00 2.83
713 774 0.238553 GCCGGAGTTCAGCTTCAAAC 59.761 55.000 5.05 0.00 0.00 2.93
714 775 1.227999 CGCCGGAGTTCAGCTTCAAA 61.228 55.000 5.05 0.00 0.00 2.69
716 777 2.048222 CGCCGGAGTTCAGCTTCA 60.048 61.111 5.05 0.00 0.00 3.02
717 778 3.491652 GCGCCGGAGTTCAGCTTC 61.492 66.667 5.05 0.00 0.00 3.86
721 2456 2.507992 CTCTGCGCCGGAGTTCAG 60.508 66.667 5.05 5.99 32.64 3.02
736 2471 1.921230 GGCTCGATTCGTCTGAAACTC 59.079 52.381 5.89 0.00 37.71 3.01
744 2479 1.065358 TTTGAACGGCTCGATTCGTC 58.935 50.000 12.41 7.88 38.78 4.20
746 2481 1.865725 GTTTTGAACGGCTCGATTCG 58.134 50.000 0.00 0.00 0.00 3.34
778 2513 0.933700 CCCTCTCCCCTTCTCTCTCT 59.066 60.000 0.00 0.00 0.00 3.10
783 2518 0.034960 GCAAACCCTCTCCCCTTCTC 60.035 60.000 0.00 0.00 0.00 2.87
784 2519 0.476611 AGCAAACCCTCTCCCCTTCT 60.477 55.000 0.00 0.00 0.00 2.85
785 2520 0.405973 AAGCAAACCCTCTCCCCTTC 59.594 55.000 0.00 0.00 0.00 3.46
786 2521 0.113190 CAAGCAAACCCTCTCCCCTT 59.887 55.000 0.00 0.00 0.00 3.95
787 2522 1.770324 CAAGCAAACCCTCTCCCCT 59.230 57.895 0.00 0.00 0.00 4.79
788 2523 1.979155 GCAAGCAAACCCTCTCCCC 60.979 63.158 0.00 0.00 0.00 4.81
789 2524 1.979155 GGCAAGCAAACCCTCTCCC 60.979 63.158 0.00 0.00 0.00 4.30
790 2525 0.613012 ATGGCAAGCAAACCCTCTCC 60.613 55.000 0.00 0.00 0.00 3.71
791 2526 1.260544 AATGGCAAGCAAACCCTCTC 58.739 50.000 0.00 0.00 0.00 3.20
792 2527 1.720781 AAATGGCAAGCAAACCCTCT 58.279 45.000 0.00 0.00 0.00 3.69
793 2528 2.037641 AGAAAATGGCAAGCAAACCCTC 59.962 45.455 0.00 0.00 0.00 4.30
794 2529 2.049372 AGAAAATGGCAAGCAAACCCT 58.951 42.857 0.00 0.00 0.00 4.34
795 2530 2.145536 CAGAAAATGGCAAGCAAACCC 58.854 47.619 0.00 0.00 0.00 4.11
796 2531 3.110447 TCAGAAAATGGCAAGCAAACC 57.890 42.857 0.00 0.00 0.00 3.27
808 2543 6.070021 GGATTTGGGGAGGATTTTCAGAAAAT 60.070 38.462 19.26 19.26 43.43 1.82
809 2544 5.248248 GGATTTGGGGAGGATTTTCAGAAAA 59.752 40.000 10.80 10.80 34.41 2.29
813 2548 3.033909 GGGATTTGGGGAGGATTTTCAG 58.966 50.000 0.00 0.00 0.00 3.02
814 2549 2.292851 GGGGATTTGGGGAGGATTTTCA 60.293 50.000 0.00 0.00 0.00 2.69
847 2582 4.886121 GGTCGATTCCCCGTCGGC 62.886 72.222 5.50 0.00 42.56 5.54
884 2631 4.590553 TGTGGGCTGTGGGAGGGA 62.591 66.667 0.00 0.00 0.00 4.20
905 2652 4.185286 GGGGAGGCGGGCGTTTAT 62.185 66.667 0.00 0.00 0.00 1.40
964 2712 2.576847 GGCCGCGCGATTTGAAAG 60.577 61.111 34.63 13.18 0.00 2.62
1251 3015 7.439955 CGGCCTAATTAATCCCCAAATAAAAAC 59.560 37.037 0.00 0.00 0.00 2.43
1269 3033 0.464452 CTCGGGTTCTTCGGCCTAAT 59.536 55.000 0.00 0.00 0.00 1.73
1460 3232 1.597027 CAAACGGACCTTGCGGAGT 60.597 57.895 0.00 0.00 34.75 3.85
1476 3248 1.599071 CAAGAGCAGAAACGTCAGCAA 59.401 47.619 0.00 0.00 38.69 3.91
1483 3255 1.670811 ACCAACACAAGAGCAGAAACG 59.329 47.619 0.00 0.00 0.00 3.60
1500 3272 3.394674 TCGTAGACATTTGAAGCACCA 57.605 42.857 0.00 0.00 0.00 4.17
1508 3280 4.253685 ACAGGTGGAATCGTAGACATTTG 58.746 43.478 0.00 0.00 42.51 2.32
1586 3358 5.614324 TCTTATAGCCTAGTGCACACAAT 57.386 39.130 21.04 0.00 44.83 2.71
1645 3428 2.227194 CCAAGTTTCAGTTAACGGGCT 58.773 47.619 5.89 0.19 33.26 5.19
1670 3454 2.036089 TGCCGTTAACCCCAAAATCAAC 59.964 45.455 0.00 0.00 0.00 3.18
1711 3495 2.267426 TGTTAATGACGACAGCATCCG 58.733 47.619 0.00 0.00 0.00 4.18
1716 3500 3.163594 GCACATTGTTAATGACGACAGC 58.836 45.455 8.41 0.00 41.46 4.40
1809 3593 7.225011 AGCAAATAAATAGAGGGGCTACTAAC 58.775 38.462 0.00 0.00 0.00 2.34
1853 3637 6.747414 TGTTATGGTCAGGTAAGCAGATAT 57.253 37.500 0.00 0.00 0.00 1.63
1948 3732 1.071239 CATCTAGCGTTTGATTCGGCG 60.071 52.381 0.00 0.00 0.00 6.46
2004 3788 3.859386 CCTTTGCAACAAGTTCTTCACAC 59.141 43.478 0.00 0.00 0.00 3.82
2193 3977 3.851458 AGAGCACTCATGATGGCATTA 57.149 42.857 17.78 0.00 30.68 1.90
2432 4216 2.417379 GCTCGTGCTGGAACTTGAGATA 60.417 50.000 1.41 0.00 36.03 1.98
2497 4281 1.813862 GCAAGCACTACACTCCCACAA 60.814 52.381 0.00 0.00 0.00 3.33
2625 4409 1.167851 CTGGCCACCAAGTGTATGTG 58.832 55.000 0.00 0.00 30.80 3.21
2628 4412 0.035056 GAGCTGGCCACCAAGTGTAT 60.035 55.000 0.00 0.00 30.80 2.29
2630 4414 1.999634 AAGAGCTGGCCACCAAGTGT 62.000 55.000 0.00 0.00 30.80 3.55
2632 4416 1.073897 GAAGAGCTGGCCACCAAGT 59.926 57.895 0.00 0.00 30.80 3.16
2679 4463 1.002544 GAACCAGCTAGAACCAGCACT 59.997 52.381 0.00 0.00 44.35 4.40
2741 4532 3.630312 GTGCGAACCATTTACATACCCAT 59.370 43.478 0.00 0.00 0.00 4.00
2794 4585 5.798125 TGGATAAGTCTAATCTGCTCTGG 57.202 43.478 0.00 0.00 0.00 3.86
2854 4645 4.080243 TCAATTTATCCTAGGGCGTTCCAA 60.080 41.667 9.46 0.00 38.24 3.53
3005 4796 5.252969 TGCAAATGTGGCTTCAGAATATC 57.747 39.130 0.00 0.00 0.00 1.63
3006 4797 5.186409 AGTTGCAAATGTGGCTTCAGAATAT 59.814 36.000 0.00 0.00 0.00 1.28
3007 4798 4.523943 AGTTGCAAATGTGGCTTCAGAATA 59.476 37.500 0.00 0.00 0.00 1.75
3008 4799 3.322828 AGTTGCAAATGTGGCTTCAGAAT 59.677 39.130 0.00 0.00 0.00 2.40
3009 4800 2.694628 AGTTGCAAATGTGGCTTCAGAA 59.305 40.909 0.00 0.00 0.00 3.02
3010 4801 2.309613 AGTTGCAAATGTGGCTTCAGA 58.690 42.857 0.00 0.00 0.00 3.27
3011 4802 2.798283 CAAGTTGCAAATGTGGCTTCAG 59.202 45.455 0.00 0.00 0.00 3.02
3012 4803 2.823984 CAAGTTGCAAATGTGGCTTCA 58.176 42.857 0.00 0.00 0.00 3.02
3013 4804 1.528161 GCAAGTTGCAAATGTGGCTTC 59.472 47.619 22.90 0.00 44.26 3.86
3014 4805 1.585297 GCAAGTTGCAAATGTGGCTT 58.415 45.000 22.90 0.00 44.26 4.35
3015 4806 3.294079 GCAAGTTGCAAATGTGGCT 57.706 47.368 22.90 0.00 44.26 4.75
3037 4828 8.892723 CCAAAAGAGTAACTACATATGCATCAA 58.107 33.333 0.19 0.00 0.00 2.57
3038 4829 8.264347 TCCAAAAGAGTAACTACATATGCATCA 58.736 33.333 0.19 0.00 0.00 3.07
3039 4830 8.552034 GTCCAAAAGAGTAACTACATATGCATC 58.448 37.037 0.19 0.00 0.00 3.91
3040 4831 8.267894 AGTCCAAAAGAGTAACTACATATGCAT 58.732 33.333 3.79 3.79 0.00 3.96
3041 4832 7.620880 AGTCCAAAAGAGTAACTACATATGCA 58.379 34.615 1.58 0.00 0.00 3.96
3042 4833 8.391106 CAAGTCCAAAAGAGTAACTACATATGC 58.609 37.037 1.58 0.00 0.00 3.14
3043 4834 9.436957 ACAAGTCCAAAAGAGTAACTACATATG 57.563 33.333 0.00 0.00 0.00 1.78
3044 4835 9.436957 CACAAGTCCAAAAGAGTAACTACATAT 57.563 33.333 0.00 0.00 0.00 1.78
3045 4836 7.876068 CCACAAGTCCAAAAGAGTAACTACATA 59.124 37.037 0.00 0.00 0.00 2.29
3046 4837 6.710744 CCACAAGTCCAAAAGAGTAACTACAT 59.289 38.462 0.00 0.00 0.00 2.29
3047 4838 6.053005 CCACAAGTCCAAAAGAGTAACTACA 58.947 40.000 0.00 0.00 0.00 2.74
3048 4839 6.018180 CACCACAAGTCCAAAAGAGTAACTAC 60.018 42.308 0.00 0.00 0.00 2.73
3049 4840 6.053005 CACCACAAGTCCAAAAGAGTAACTA 58.947 40.000 0.00 0.00 0.00 2.24
3050 4841 4.881850 CACCACAAGTCCAAAAGAGTAACT 59.118 41.667 0.00 0.00 0.00 2.24
3051 4842 4.879545 TCACCACAAGTCCAAAAGAGTAAC 59.120 41.667 0.00 0.00 0.00 2.50
3052 4843 4.879545 GTCACCACAAGTCCAAAAGAGTAA 59.120 41.667 0.00 0.00 0.00 2.24
3053 4844 4.080807 TGTCACCACAAGTCCAAAAGAGTA 60.081 41.667 0.00 0.00 0.00 2.59
3054 4845 3.279434 GTCACCACAAGTCCAAAAGAGT 58.721 45.455 0.00 0.00 0.00 3.24
3055 4846 3.278574 TGTCACCACAAGTCCAAAAGAG 58.721 45.455 0.00 0.00 0.00 2.85
3056 4847 3.278574 CTGTCACCACAAGTCCAAAAGA 58.721 45.455 0.00 0.00 29.82 2.52
3057 4848 3.016736 ACTGTCACCACAAGTCCAAAAG 58.983 45.455 0.00 0.00 29.82 2.27
3058 4849 3.080300 ACTGTCACCACAAGTCCAAAA 57.920 42.857 0.00 0.00 29.82 2.44
3059 4850 2.799126 ACTGTCACCACAAGTCCAAA 57.201 45.000 0.00 0.00 29.82 3.28
3060 4851 2.769663 ACTACTGTCACCACAAGTCCAA 59.230 45.455 0.00 0.00 29.82 3.53
3061 4852 2.394632 ACTACTGTCACCACAAGTCCA 58.605 47.619 0.00 0.00 29.82 4.02
3062 4853 3.391049 GAACTACTGTCACCACAAGTCC 58.609 50.000 0.00 0.00 29.82 3.85
3063 4854 3.050619 CGAACTACTGTCACCACAAGTC 58.949 50.000 0.00 0.00 29.82 3.01
3064 4855 2.802057 GCGAACTACTGTCACCACAAGT 60.802 50.000 0.00 0.00 29.82 3.16
3065 4856 1.792949 GCGAACTACTGTCACCACAAG 59.207 52.381 0.00 0.00 29.82 3.16
3066 4857 1.411246 AGCGAACTACTGTCACCACAA 59.589 47.619 0.00 0.00 29.82 3.33
3067 4858 1.037493 AGCGAACTACTGTCACCACA 58.963 50.000 0.00 0.00 0.00 4.17
3068 4859 2.150397 AAGCGAACTACTGTCACCAC 57.850 50.000 0.00 0.00 0.00 4.16
3069 4860 2.902705 AAAGCGAACTACTGTCACCA 57.097 45.000 0.00 0.00 0.00 4.17
3070 4861 3.645884 TGTAAAGCGAACTACTGTCACC 58.354 45.455 0.00 0.00 0.00 4.02
3071 4862 5.646467 TTTGTAAAGCGAACTACTGTCAC 57.354 39.130 0.00 0.00 0.00 3.67
3072 4863 5.178623 CCATTTGTAAAGCGAACTACTGTCA 59.821 40.000 0.00 0.00 0.00 3.58
3073 4864 5.407387 TCCATTTGTAAAGCGAACTACTGTC 59.593 40.000 0.00 0.00 0.00 3.51
3074 4865 5.178809 GTCCATTTGTAAAGCGAACTACTGT 59.821 40.000 0.00 0.00 0.00 3.55
3075 4866 5.408604 AGTCCATTTGTAAAGCGAACTACTG 59.591 40.000 0.00 0.00 0.00 2.74
3076 4867 5.548406 AGTCCATTTGTAAAGCGAACTACT 58.452 37.500 0.00 0.00 0.00 2.57
3077 4868 5.163884 GGAGTCCATTTGTAAAGCGAACTAC 60.164 44.000 3.60 0.00 0.00 2.73
3078 4869 4.933400 GGAGTCCATTTGTAAAGCGAACTA 59.067 41.667 3.60 0.00 0.00 2.24
3079 4870 3.751698 GGAGTCCATTTGTAAAGCGAACT 59.248 43.478 3.60 0.00 0.00 3.01
3080 4871 3.751698 AGGAGTCCATTTGTAAAGCGAAC 59.248 43.478 12.86 0.00 0.00 3.95
3081 4872 4.015872 AGGAGTCCATTTGTAAAGCGAA 57.984 40.909 12.86 0.00 0.00 4.70
3082 4873 3.695830 AGGAGTCCATTTGTAAAGCGA 57.304 42.857 12.86 0.00 0.00 4.93
3083 4874 5.584649 TCATAAGGAGTCCATTTGTAAAGCG 59.415 40.000 12.86 0.00 0.00 4.68
3084 4875 7.573968 ATCATAAGGAGTCCATTTGTAAAGC 57.426 36.000 12.86 0.00 0.00 3.51
3089 4880 8.717717 TCAGAATATCATAAGGAGTCCATTTGT 58.282 33.333 12.86 0.00 0.00 2.83
3090 4881 9.565090 TTCAGAATATCATAAGGAGTCCATTTG 57.435 33.333 12.86 5.16 0.00 2.32
3091 4882 9.790344 CTTCAGAATATCATAAGGAGTCCATTT 57.210 33.333 12.86 0.00 0.00 2.32
3092 4883 7.882271 GCTTCAGAATATCATAAGGAGTCCATT 59.118 37.037 12.86 5.57 0.00 3.16
3093 4884 7.393216 GCTTCAGAATATCATAAGGAGTCCAT 58.607 38.462 12.86 0.97 0.00 3.41
3094 4885 6.239714 GGCTTCAGAATATCATAAGGAGTCCA 60.240 42.308 12.86 0.00 0.00 4.02
3095 4886 6.169800 GGCTTCAGAATATCATAAGGAGTCC 58.830 44.000 0.00 0.00 0.00 3.85
3096 4887 6.648725 GTGGCTTCAGAATATCATAAGGAGTC 59.351 42.308 0.00 0.00 0.00 3.36
3097 4888 6.100279 TGTGGCTTCAGAATATCATAAGGAGT 59.900 38.462 0.00 0.00 0.00 3.85
3098 4889 6.528321 TGTGGCTTCAGAATATCATAAGGAG 58.472 40.000 0.00 0.00 0.00 3.69
3099 4890 6.499106 TGTGGCTTCAGAATATCATAAGGA 57.501 37.500 0.00 0.00 0.00 3.36
3100 4891 7.756395 AATGTGGCTTCAGAATATCATAAGG 57.244 36.000 0.00 0.00 0.00 2.69
3101 4892 7.594015 GCAAATGTGGCTTCAGAATATCATAAG 59.406 37.037 0.00 0.00 0.00 1.73
3102 4893 7.068470 TGCAAATGTGGCTTCAGAATATCATAA 59.932 33.333 0.00 0.00 0.00 1.90
3103 4894 6.546772 TGCAAATGTGGCTTCAGAATATCATA 59.453 34.615 0.00 0.00 0.00 2.15
3104 4895 5.361571 TGCAAATGTGGCTTCAGAATATCAT 59.638 36.000 0.00 0.00 0.00 2.45
3105 4896 4.705991 TGCAAATGTGGCTTCAGAATATCA 59.294 37.500 0.00 0.00 0.00 2.15
3416 5213 0.694771 ACACATGTGGTCCAGATGCT 59.305 50.000 28.64 12.19 38.47 3.79
3417 5214 0.806868 CACACATGTGGTCCAGATGC 59.193 55.000 28.64 0.00 38.47 3.91
3435 5247 5.728637 ACTAGTCTGTGTGAATCATGACA 57.271 39.130 0.00 0.00 36.02 3.58
3439 5251 8.072321 AGTGAATACTAGTCTGTGTGAATCAT 57.928 34.615 0.00 0.00 34.74 2.45
3503 5317 0.037697 TCGCTGCCGTACAACTGATT 60.038 50.000 0.00 0.00 35.54 2.57
3578 5392 2.031163 GTCCAGTTGTGGCGCTCT 59.969 61.111 7.64 0.00 44.60 4.09
3654 5468 2.194326 GCAGAGGAAGGGGATGGC 59.806 66.667 0.00 0.00 0.00 4.40
3872 5686 1.382692 GGGGAATTGCAGCTGAGAGC 61.383 60.000 20.43 1.45 42.84 4.09
3968 5782 3.185455 AGACTTAGATGCCAGAGGGTTT 58.815 45.455 0.00 0.00 36.17 3.27
4052 5868 2.554032 GCTTGTGTACCAGCTTGTTGAT 59.446 45.455 0.00 0.00 0.00 2.57
4056 5872 0.105964 TCGCTTGTGTACCAGCTTGT 59.894 50.000 6.54 0.00 0.00 3.16
4111 5927 3.387699 GGGCTGGCCAAATATGTGTTATT 59.612 43.478 16.34 0.00 37.98 1.40
4115 5931 0.687427 GGGGCTGGCCAAATATGTGT 60.687 55.000 22.68 0.00 37.98 3.72
4121 5937 1.809939 TAGGTTGGGGCTGGCCAAAT 61.810 55.000 22.68 5.65 37.98 2.32
4127 5943 0.111253 GATCCATAGGTTGGGGCTGG 59.889 60.000 0.00 0.00 46.45 4.85
4224 6040 4.514066 TGCGCTATCTTAGAGAATACACGA 59.486 41.667 9.73 0.00 0.00 4.35
4244 6060 0.612229 AGCTGGATCTATGGGATGCG 59.388 55.000 0.00 0.00 44.29 4.73
4345 6162 6.346518 CGCAAAAACTAGGCAAAATTGGTTAG 60.347 38.462 0.00 0.00 0.00 2.34
4351 6176 6.670077 TTTTCGCAAAAACTAGGCAAAATT 57.330 29.167 0.00 0.00 29.44 1.82
4352 6177 6.670077 TTTTTCGCAAAAACTAGGCAAAAT 57.330 29.167 0.00 0.00 35.57 1.82
4448 8554 5.914898 TGAATTCTCTTCCGATGAGTACA 57.085 39.130 7.05 5.36 33.59 2.90
4457 8563 7.464358 ACAATAATTCGTTGAATTCTCTTCCG 58.536 34.615 7.05 2.27 40.77 4.30
4507 8613 1.948104 TCTACGGGCAAAATGGATCG 58.052 50.000 0.00 0.00 0.00 3.69
4518 8624 0.249657 CCTCAGCTCATTCTACGGGC 60.250 60.000 0.00 0.00 0.00 6.13
4628 8734 4.948004 TCAGTAAGAGCGAAGGAGATAACA 59.052 41.667 0.00 0.00 0.00 2.41
4665 8771 2.034999 GTTGATGCCGGTTGGGGA 59.965 61.111 1.90 0.00 42.12 4.81
4695 8801 0.682852 TTAGTGGTGCTGCTTACGGT 59.317 50.000 0.00 0.00 0.00 4.83
4736 8842 1.076549 GGTGTTGGGGGATTCAGCA 59.923 57.895 0.00 0.00 0.00 4.41
4788 8894 4.883354 GGGCATTCCGGCAGAGGG 62.883 72.222 0.00 0.00 43.60 4.30
4791 8897 0.179020 CAATAGGGCATTCCGGCAGA 60.179 55.000 0.00 0.00 43.60 4.26
4793 8899 0.465460 GTCAATAGGGCATTCCGGCA 60.465 55.000 0.00 0.00 43.60 5.69
4816 8922 2.912295 TGGAAATGGTGTGAGATGGAGA 59.088 45.455 0.00 0.00 0.00 3.71
4826 8933 6.569610 CGCTACAATTTTAGTGGAAATGGTGT 60.570 38.462 4.56 0.00 34.77 4.16
4838 8945 2.430956 CGTGCAGCGCTACAATTTTAG 58.569 47.619 12.92 0.00 0.00 1.85
4870 8977 3.327172 TCCACCCACAGTTTACCGATTTA 59.673 43.478 0.00 0.00 0.00 1.40
4919 9026 7.415765 CCCGTGGTTGTTAAATATTTAGATGCA 60.416 37.037 7.91 0.00 0.00 3.96
4964 9074 4.530710 AACTGCAGTCGACAGGTAAATA 57.469 40.909 21.95 0.00 39.55 1.40
4988 9098 1.451207 CATGGCGACGGAATTCCCA 60.451 57.895 19.01 10.63 34.14 4.37
5017 9127 1.665916 CTGGGCATAGATCACCGCG 60.666 63.158 0.00 0.00 0.00 6.46
5055 9165 0.603975 AGAGGTGCGTCTTTGAAGCC 60.604 55.000 3.37 0.00 36.29 4.35
5142 9462 1.631898 GGGGGTTAGTTCTACTGCCAA 59.368 52.381 0.00 0.00 0.00 4.52
5167 9487 1.496934 AAAAGAAAATGTTGGGCGCG 58.503 45.000 0.00 0.00 0.00 6.86
5194 9515 1.327303 GTTTGTCTGGCCCACATGAA 58.673 50.000 0.00 0.00 0.00 2.57
5195 9516 0.888736 CGTTTGTCTGGCCCACATGA 60.889 55.000 0.00 0.00 0.00 3.07
5356 9678 7.600375 ACTGTCATGCGAATACAGGAATATTAG 59.400 37.037 14.07 0.00 43.91 1.73
5402 9724 0.392706 CAGCCGCCCAGATATGTGTA 59.607 55.000 0.00 0.00 0.00 2.90
5405 9727 1.146930 CACAGCCGCCCAGATATGT 59.853 57.895 0.00 0.00 0.00 2.29
5458 9780 2.693267 AAAGGAGTATCACTTCGGGC 57.307 50.000 0.00 0.00 36.25 6.13
5462 9788 9.237846 CAAAAACAAGAAAAGGAGTATCACTTC 57.762 33.333 0.00 0.00 36.25 3.01
5467 9793 6.978080 TGTGCAAAAACAAGAAAAGGAGTATC 59.022 34.615 0.00 0.00 0.00 2.24
5715 10054 2.411904 CAGTTCTCCAGAGTGCAGAAC 58.588 52.381 2.98 2.98 44.33 3.01
5839 10178 8.488651 AATAAACTCCACTTACGTATTCTTGG 57.511 34.615 0.00 1.10 0.00 3.61
5860 10200 5.643348 CACTGAATGCCTGTGACAGTAATAA 59.357 40.000 12.15 0.00 44.50 1.40
5890 10230 4.214119 TGTCAGAAGAGAGCGGAAAATTTG 59.786 41.667 0.00 0.00 0.00 2.32
5913 10253 6.096423 TGTTAATACAGGAGTAACATCGCTCT 59.904 38.462 1.31 0.00 42.18 4.09
5968 10308 8.654230 ATTGTAGTATTGTGCAGTTATCTCTG 57.346 34.615 0.00 0.00 38.35 3.35
5998 10338 9.794685 CATACTATCGTACTGATGCAATTATCT 57.205 33.333 9.52 0.00 37.99 1.98
6010 10350 3.243737 TGCTTGGGCATACTATCGTACTG 60.244 47.826 0.00 0.00 44.28 2.74
6073 10413 1.963515 AGAGGCCGAAAACAAAAGCAT 59.036 42.857 0.00 0.00 0.00 3.79
6076 10416 2.030805 CCTGAGAGGCCGAAAACAAAAG 60.031 50.000 0.00 0.00 0.00 2.27
6087 10427 1.116308 GGAGTAGTTCCTGAGAGGCC 58.884 60.000 0.00 0.00 43.16 5.19
6102 10442 0.684479 TGCACCTCTCGCATAGGAGT 60.684 55.000 3.15 0.00 37.57 3.85
6111 10451 2.949451 ACAACTCTATGCACCTCTCG 57.051 50.000 0.00 0.00 0.00 4.04
6128 10468 6.769512 AGTGGTTTAGCTCTATCAAGAAACA 58.230 36.000 0.00 0.00 0.00 2.83
6225 10565 5.105473 TGTCTACAGCTTTGGGTATGAGTAC 60.105 44.000 0.00 0.00 0.00 2.73
6234 10574 1.168714 GGCTTGTCTACAGCTTTGGG 58.831 55.000 0.00 0.00 0.00 4.12
6261 10601 5.336055 CCGAGGTTAACCATTTTATGCAACA 60.336 40.000 26.26 0.00 38.89 3.33
6262 10602 5.099575 CCGAGGTTAACCATTTTATGCAAC 58.900 41.667 26.26 0.00 38.89 4.17
6264 10604 4.590918 TCCGAGGTTAACCATTTTATGCA 58.409 39.130 26.26 0.00 38.89 3.96
6265 10605 5.570234 TTCCGAGGTTAACCATTTTATGC 57.430 39.130 26.26 4.46 38.89 3.14
6267 10607 7.123383 AGGATTTCCGAGGTTAACCATTTTAT 58.877 34.615 26.26 11.76 42.08 1.40
6268 10608 6.486941 AGGATTTCCGAGGTTAACCATTTTA 58.513 36.000 26.26 7.52 42.08 1.52
6273 10635 3.839490 TGTAGGATTTCCGAGGTTAACCA 59.161 43.478 26.26 4.93 42.08 3.67
6282 10644 4.039973 ACTTCACAAGTGTAGGATTTCCGA 59.960 41.667 10.83 0.00 41.01 4.55
6319 10681 0.321653 AGTAACTTGGCTCGCCCTTG 60.322 55.000 5.33 0.00 34.56 3.61
6340 10702 3.311103 ACACCCTAGGCCTAATCCAGTAA 60.311 47.826 14.85 0.00 0.00 2.24
6341 10703 2.249214 ACACCCTAGGCCTAATCCAGTA 59.751 50.000 14.85 0.00 0.00 2.74
6342 10704 1.009675 ACACCCTAGGCCTAATCCAGT 59.990 52.381 14.85 6.34 0.00 4.00
6352 10714 5.223449 TGCTTATGTTATACACCCTAGGC 57.777 43.478 2.05 0.00 0.00 3.93
6379 10741 5.471556 AACATGTCAGGCAAATTCATCAA 57.528 34.783 0.00 0.00 0.00 2.57
6381 10743 8.483307 AATAAAACATGTCAGGCAAATTCATC 57.517 30.769 0.00 0.00 0.00 2.92
6462 10824 4.811557 CCAAAATTGTAAACCTGCGGAAAA 59.188 37.500 0.00 0.00 0.00 2.29
6540 10902 0.981183 TGGTACTTGGTAGGTGGCTG 59.019 55.000 0.00 0.00 0.00 4.85
6541 10903 0.981943 GTGGTACTTGGTAGGTGGCT 59.018 55.000 0.00 0.00 0.00 4.75
6609 10972 4.101448 GCCGACAGGTGCCCAGAT 62.101 66.667 0.00 0.00 40.50 2.90
6675 11038 3.777925 CGCGCGGAAGTCACCAAG 61.778 66.667 24.84 0.00 0.00 3.61
6690 11053 3.552604 TCTTTAAATCAGCAACCACGC 57.447 42.857 0.00 0.00 0.00 5.34
6700 11063 3.731089 ACCGACCACGTTCTTTAAATCA 58.269 40.909 0.00 0.00 37.88 2.57
6722 11086 4.092771 CATCCTTGCACAAGATGACAAG 57.907 45.455 11.94 9.40 40.79 3.16
6766 11130 2.430465 ACAAGGCAGTGATAGCAACTG 58.570 47.619 0.00 6.30 34.83 3.16
6778 11142 4.682787 TGTATATGAGACGAACAAGGCAG 58.317 43.478 0.00 0.00 0.00 4.85
6789 11153 5.278561 GGTGAGCCACTACTGTATATGAGAC 60.279 48.000 5.48 0.00 34.40 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.