Multiple sequence alignment - TraesCS7A01G154600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G154600 chr7A 100.000 3074 0 0 1 3074 107799852 107796779 0.000000e+00 5677.0
1 TraesCS7A01G154600 chr7A 86.223 421 40 9 310 714 195411706 195412124 1.010000e-119 440.0
2 TraesCS7A01G154600 chr7B 94.314 1530 55 12 711 2224 61114194 61112681 0.000000e+00 2314.0
3 TraesCS7A01G154600 chr7B 80.134 896 121 28 2209 3073 61111219 61110350 1.570000e-172 616.0
4 TraesCS7A01G154600 chr7B 91.667 48 4 0 266 313 61114241 61114194 1.980000e-07 67.6
5 TraesCS7A01G154600 chr2B 84.565 1069 127 20 986 2034 141282501 141283551 0.000000e+00 1026.0
6 TraesCS7A01G154600 chr2B 81.538 845 114 21 1040 1860 141156783 141155957 0.000000e+00 658.0
7 TraesCS7A01G154600 chr2B 79.254 858 137 28 1201 2041 141147578 141148411 7.440000e-156 560.0
8 TraesCS7A01G154600 chr2B 78.802 835 122 37 1195 2009 140852281 140853080 7.600000e-141 510.0
9 TraesCS7A01G154600 chr2A 84.091 1100 119 35 967 2034 88299417 88300492 0.000000e+00 1011.0
10 TraesCS7A01G154600 chr2A 82.886 1005 130 18 1039 2019 88288206 88287220 0.000000e+00 865.0
11 TraesCS7A01G154600 chr2A 79.931 867 131 33 1199 2044 88281026 88281870 5.670000e-167 597.0
12 TraesCS7A01G154600 chr2A 76.613 992 170 43 1039 1999 88117750 88118710 9.910000e-135 490.0
13 TraesCS7A01G154600 chr2A 88.620 413 33 7 308 707 732561562 732561151 9.910000e-135 490.0
14 TraesCS7A01G154600 chr2A 75.702 1033 169 55 1048 2042 88122036 88123024 2.810000e-120 442.0
15 TraesCS7A01G154600 chr2A 86.634 404 41 8 314 708 749635035 749634636 4.710000e-118 435.0
16 TraesCS7A01G154600 chr2A 76.505 864 141 38 1201 2042 88329506 88330329 6.130000e-112 414.0
17 TraesCS7A01G154600 chr2A 80.545 257 48 2 2818 3073 35375196 35375451 2.420000e-46 196.0
18 TraesCS7A01G154600 chr2D 85.285 999 104 19 1053 2034 88088274 88089246 0.000000e+00 990.0
19 TraesCS7A01G154600 chr2D 82.018 1001 134 30 1039 2013 87816459 87815479 0.000000e+00 809.0
20 TraesCS7A01G154600 chr2D 79.677 866 132 32 1199 2041 87806337 87807181 4.420000e-163 584.0
21 TraesCS7A01G154600 chr2D 78.631 833 127 31 1195 2009 87762343 87763142 3.540000e-139 505.0
22 TraesCS7A01G154600 chr2D 75.799 1033 171 51 1048 2042 87790642 87791633 1.680000e-122 449.0
23 TraesCS7A01G154600 chr2D 92.771 83 4 2 1 81 172858767 172858685 5.380000e-23 119.0
24 TraesCS7A01G154600 chr7D 88.235 408 30 8 314 707 48707559 48707156 3.590000e-129 472.0
25 TraesCS7A01G154600 chr7D 87.961 407 32 10 314 707 48751463 48751061 6.000000e-127 464.0
26 TraesCS7A01G154600 chr7D 92.718 206 15 0 1642 1847 611159101 611158896 6.440000e-77 298.0
27 TraesCS7A01G154600 chr4D 87.562 402 39 8 313 705 56313058 56312659 3.610000e-124 455.0
28 TraesCS7A01G154600 chr4D 97.143 70 2 0 1 70 509632943 509633012 5.380000e-23 119.0
29 TraesCS7A01G154600 chr3B 87.105 411 38 5 313 710 750348539 750348131 4.670000e-123 451.0
30 TraesCS7A01G154600 chr3B 86.835 395 31 14 312 697 693337181 693337563 3.660000e-114 422.0
31 TraesCS7A01G154600 chrUn 87.160 405 38 6 316 707 8122713 8123116 6.050000e-122 448.0
32 TraesCS7A01G154600 chr6A 98.592 71 1 0 1 71 371637012 371636942 3.220000e-25 126.0
33 TraesCS7A01G154600 chr1B 97.260 73 2 0 1 73 426561651 426561579 1.160000e-24 124.0
34 TraesCS7A01G154600 chr1B 97.297 74 1 1 1 73 626320983 626320910 1.160000e-24 124.0
35 TraesCS7A01G154600 chr1B 91.860 86 5 2 1 85 509158983 509158899 5.380000e-23 119.0
36 TraesCS7A01G154600 chr5D 91.011 89 6 2 1 87 97022250 97022162 5.380000e-23 119.0
37 TraesCS7A01G154600 chr1A 91.860 86 4 3 1 84 171294747 171294663 1.940000e-22 117.0
38 TraesCS7A01G154600 chr5A 89.362 94 7 3 1 94 240728390 240728480 6.970000e-22 115.0
39 TraesCS7A01G154600 chr6D 98.276 58 1 0 199 256 1020949 1020892 5.420000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G154600 chr7A 107796779 107799852 3073 True 5677.0 5677 100.0000 1 3074 1 chr7A.!!$R1 3073
1 TraesCS7A01G154600 chr7B 61110350 61114241 3891 True 999.2 2314 88.7050 266 3073 3 chr7B.!!$R1 2807
2 TraesCS7A01G154600 chr2B 141282501 141283551 1050 False 1026.0 1026 84.5650 986 2034 1 chr2B.!!$F3 1048
3 TraesCS7A01G154600 chr2B 141155957 141156783 826 True 658.0 658 81.5380 1040 1860 1 chr2B.!!$R1 820
4 TraesCS7A01G154600 chr2B 141147578 141148411 833 False 560.0 560 79.2540 1201 2041 1 chr2B.!!$F2 840
5 TraesCS7A01G154600 chr2B 140852281 140853080 799 False 510.0 510 78.8020 1195 2009 1 chr2B.!!$F1 814
6 TraesCS7A01G154600 chr2A 88299417 88300492 1075 False 1011.0 1011 84.0910 967 2034 1 chr2A.!!$F3 1067
7 TraesCS7A01G154600 chr2A 88287220 88288206 986 True 865.0 865 82.8860 1039 2019 1 chr2A.!!$R1 980
8 TraesCS7A01G154600 chr2A 88281026 88281870 844 False 597.0 597 79.9310 1199 2044 1 chr2A.!!$F2 845
9 TraesCS7A01G154600 chr2A 88117750 88123024 5274 False 466.0 490 76.1575 1039 2042 2 chr2A.!!$F5 1003
10 TraesCS7A01G154600 chr2A 88329506 88330329 823 False 414.0 414 76.5050 1201 2042 1 chr2A.!!$F4 841
11 TraesCS7A01G154600 chr2D 88088274 88089246 972 False 990.0 990 85.2850 1053 2034 1 chr2D.!!$F4 981
12 TraesCS7A01G154600 chr2D 87815479 87816459 980 True 809.0 809 82.0180 1039 2013 1 chr2D.!!$R1 974
13 TraesCS7A01G154600 chr2D 87806337 87807181 844 False 584.0 584 79.6770 1199 2041 1 chr2D.!!$F3 842
14 TraesCS7A01G154600 chr2D 87762343 87763142 799 False 505.0 505 78.6310 1195 2009 1 chr2D.!!$F1 814
15 TraesCS7A01G154600 chr2D 87790642 87791633 991 False 449.0 449 75.7990 1048 2042 1 chr2D.!!$F2 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 341 0.106719 CCTTTGGGTCCCGCATGTAT 60.107 55.0 2.65 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 6491 0.251354 ACACGGCTGCTCATCTCAAT 59.749 50.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.835027 CCTCTAGGGCGTATTTCCAAC 58.165 52.381 0.00 0.00 0.00 3.77
64 65 2.169769 CCTCTAGGGCGTATTTCCAACA 59.830 50.000 0.00 0.00 0.00 3.33
65 66 3.458189 CTCTAGGGCGTATTTCCAACAG 58.542 50.000 0.00 0.00 0.00 3.16
66 67 2.835764 TCTAGGGCGTATTTCCAACAGT 59.164 45.455 0.00 0.00 0.00 3.55
67 68 2.579410 AGGGCGTATTTCCAACAGTT 57.421 45.000 0.00 0.00 0.00 3.16
68 69 2.871453 AGGGCGTATTTCCAACAGTTT 58.129 42.857 0.00 0.00 0.00 2.66
69 70 3.227614 AGGGCGTATTTCCAACAGTTTT 58.772 40.909 0.00 0.00 0.00 2.43
70 71 4.400120 AGGGCGTATTTCCAACAGTTTTA 58.600 39.130 0.00 0.00 0.00 1.52
71 72 4.216902 AGGGCGTATTTCCAACAGTTTTAC 59.783 41.667 0.00 0.00 0.00 2.01
72 73 4.023021 GGGCGTATTTCCAACAGTTTTACA 60.023 41.667 0.00 0.00 0.00 2.41
73 74 5.151389 GGCGTATTTCCAACAGTTTTACAG 58.849 41.667 0.00 0.00 0.00 2.74
74 75 5.151389 GCGTATTTCCAACAGTTTTACAGG 58.849 41.667 0.00 0.00 0.00 4.00
75 76 5.278120 GCGTATTTCCAACAGTTTTACAGGT 60.278 40.000 0.00 0.00 0.00 4.00
76 77 6.368213 CGTATTTCCAACAGTTTTACAGGTC 58.632 40.000 0.00 0.00 0.00 3.85
77 78 6.017770 CGTATTTCCAACAGTTTTACAGGTCA 60.018 38.462 0.00 0.00 0.00 4.02
78 79 6.783708 ATTTCCAACAGTTTTACAGGTCAA 57.216 33.333 0.00 0.00 0.00 3.18
79 80 5.828299 TTCCAACAGTTTTACAGGTCAAG 57.172 39.130 0.00 0.00 0.00 3.02
80 81 4.850680 TCCAACAGTTTTACAGGTCAAGT 58.149 39.130 0.00 0.00 0.00 3.16
81 82 5.258051 TCCAACAGTTTTACAGGTCAAGTT 58.742 37.500 0.00 0.00 0.00 2.66
82 83 5.124776 TCCAACAGTTTTACAGGTCAAGTTG 59.875 40.000 0.00 0.00 35.03 3.16
83 84 5.339990 CAACAGTTTTACAGGTCAAGTTGG 58.660 41.667 2.34 0.00 32.50 3.77
84 85 4.850680 ACAGTTTTACAGGTCAAGTTGGA 58.149 39.130 2.34 0.00 0.00 3.53
85 86 5.445964 ACAGTTTTACAGGTCAAGTTGGAT 58.554 37.500 2.34 0.00 0.00 3.41
86 87 5.299279 ACAGTTTTACAGGTCAAGTTGGATG 59.701 40.000 2.34 2.48 0.00 3.51
87 88 4.827284 AGTTTTACAGGTCAAGTTGGATGG 59.173 41.667 2.34 0.00 0.00 3.51
88 89 4.447138 TTTACAGGTCAAGTTGGATGGT 57.553 40.909 2.34 0.19 0.00 3.55
89 90 5.570205 TTTACAGGTCAAGTTGGATGGTA 57.430 39.130 2.34 0.00 0.00 3.25
90 91 3.418684 ACAGGTCAAGTTGGATGGTAC 57.581 47.619 2.34 0.00 0.00 3.34
91 92 2.979678 ACAGGTCAAGTTGGATGGTACT 59.020 45.455 2.34 0.00 0.00 2.73
92 93 3.394606 ACAGGTCAAGTTGGATGGTACTT 59.605 43.478 2.34 0.00 35.06 2.24
93 94 4.141251 ACAGGTCAAGTTGGATGGTACTTT 60.141 41.667 2.34 0.00 32.50 2.66
94 95 4.827284 CAGGTCAAGTTGGATGGTACTTTT 59.173 41.667 2.34 0.00 32.50 2.27
95 96 5.048713 CAGGTCAAGTTGGATGGTACTTTTC 60.049 44.000 2.34 0.00 32.50 2.29
96 97 5.070685 GGTCAAGTTGGATGGTACTTTTCT 58.929 41.667 2.34 0.00 32.50 2.52
97 98 5.048713 GGTCAAGTTGGATGGTACTTTTCTG 60.049 44.000 2.34 0.00 32.50 3.02
98 99 5.531287 GTCAAGTTGGATGGTACTTTTCTGT 59.469 40.000 2.34 0.00 32.50 3.41
99 100 5.763204 TCAAGTTGGATGGTACTTTTCTGTC 59.237 40.000 2.34 0.00 32.50 3.51
100 101 4.652822 AGTTGGATGGTACTTTTCTGTCC 58.347 43.478 0.00 0.00 0.00 4.02
101 102 3.328382 TGGATGGTACTTTTCTGTCCG 57.672 47.619 0.00 0.00 0.00 4.79
102 103 2.635915 TGGATGGTACTTTTCTGTCCGT 59.364 45.455 0.00 0.00 0.00 4.69
103 104 3.000727 GGATGGTACTTTTCTGTCCGTG 58.999 50.000 0.00 0.00 0.00 4.94
104 105 1.873698 TGGTACTTTTCTGTCCGTGC 58.126 50.000 0.00 0.00 0.00 5.34
105 106 1.139256 TGGTACTTTTCTGTCCGTGCA 59.861 47.619 0.00 0.00 0.00 4.57
106 107 1.798813 GGTACTTTTCTGTCCGTGCAG 59.201 52.381 0.00 0.00 37.81 4.41
107 108 2.480845 GTACTTTTCTGTCCGTGCAGT 58.519 47.619 0.00 0.00 37.70 4.40
108 109 1.299541 ACTTTTCTGTCCGTGCAGTG 58.700 50.000 0.00 0.00 37.70 3.66
109 110 1.134521 ACTTTTCTGTCCGTGCAGTGA 60.135 47.619 0.00 0.00 37.70 3.41
110 111 1.261619 CTTTTCTGTCCGTGCAGTGAC 59.738 52.381 8.29 8.29 37.70 3.67
111 112 0.531974 TTTCTGTCCGTGCAGTGACC 60.532 55.000 11.83 0.00 37.70 4.02
112 113 2.693250 TTCTGTCCGTGCAGTGACCG 62.693 60.000 11.83 6.80 37.70 4.79
113 114 4.293648 TGTCCGTGCAGTGACCGG 62.294 66.667 13.10 13.10 43.03 5.28
115 116 3.986006 TCCGTGCAGTGACCGGAC 61.986 66.667 9.46 1.07 45.20 4.79
116 117 4.293648 CCGTGCAGTGACCGGACA 62.294 66.667 9.46 5.04 44.41 4.02
117 118 2.734723 CGTGCAGTGACCGGACAG 60.735 66.667 9.46 0.00 0.00 3.51
118 119 3.044305 GTGCAGTGACCGGACAGC 61.044 66.667 9.46 10.11 0.00 4.40
119 120 4.314440 TGCAGTGACCGGACAGCC 62.314 66.667 9.46 0.00 0.00 4.85
131 132 4.922026 ACAGCCGCCCGAACGTTT 62.922 61.111 0.46 0.00 0.00 3.60
132 133 4.383602 CAGCCGCCCGAACGTTTG 62.384 66.667 8.68 8.68 0.00 2.93
135 136 4.020378 CCGCCCGAACGTTTGGTG 62.020 66.667 28.80 23.56 0.00 4.17
136 137 4.676586 CGCCCGAACGTTTGGTGC 62.677 66.667 28.80 27.29 0.00 5.01
140 141 3.249999 CGAACGTTTGGTGCGGAT 58.750 55.556 7.72 0.00 44.34 4.18
141 142 2.447408 CGAACGTTTGGTGCGGATA 58.553 52.632 7.72 0.00 44.34 2.59
142 143 0.791422 CGAACGTTTGGTGCGGATAA 59.209 50.000 7.72 0.00 44.34 1.75
143 144 1.201877 CGAACGTTTGGTGCGGATAAG 60.202 52.381 7.72 0.00 44.34 1.73
144 145 1.129811 GAACGTTTGGTGCGGATAAGG 59.870 52.381 0.46 0.00 0.00 2.69
145 146 0.675522 ACGTTTGGTGCGGATAAGGG 60.676 55.000 0.00 0.00 0.00 3.95
146 147 1.373590 CGTTTGGTGCGGATAAGGGG 61.374 60.000 0.00 0.00 0.00 4.79
147 148 1.379309 TTTGGTGCGGATAAGGGGC 60.379 57.895 0.00 0.00 0.00 5.80
148 149 1.858739 TTTGGTGCGGATAAGGGGCT 61.859 55.000 0.00 0.00 0.00 5.19
149 150 2.111251 GGTGCGGATAAGGGGCTC 59.889 66.667 0.00 0.00 0.00 4.70
150 151 2.111251 GTGCGGATAAGGGGCTCC 59.889 66.667 0.00 0.00 0.00 4.70
154 155 2.447959 GGATAAGGGGCTCCGGGT 60.448 66.667 0.00 0.00 38.33 5.28
155 156 2.819284 GGATAAGGGGCTCCGGGTG 61.819 68.421 0.00 0.00 38.33 4.61
156 157 2.042261 ATAAGGGGCTCCGGGTGT 59.958 61.111 0.00 0.00 38.33 4.16
157 158 0.761702 GATAAGGGGCTCCGGGTGTA 60.762 60.000 0.00 0.00 38.33 2.90
158 159 0.763223 ATAAGGGGCTCCGGGTGTAG 60.763 60.000 0.00 0.00 38.33 2.74
159 160 1.877672 TAAGGGGCTCCGGGTGTAGA 61.878 60.000 0.00 0.00 38.33 2.59
160 161 2.446036 GGGGCTCCGGGTGTAGAT 60.446 66.667 0.00 0.00 0.00 1.98
161 162 2.808206 GGGGCTCCGGGTGTAGATG 61.808 68.421 0.00 0.00 0.00 2.90
162 163 2.109181 GGCTCCGGGTGTAGATGC 59.891 66.667 0.00 0.00 0.00 3.91
163 164 2.435693 GGCTCCGGGTGTAGATGCT 61.436 63.158 0.00 0.00 0.00 3.79
164 165 1.068250 GCTCCGGGTGTAGATGCTC 59.932 63.158 0.00 0.00 0.00 4.26
165 166 1.395826 GCTCCGGGTGTAGATGCTCT 61.396 60.000 0.00 0.00 0.00 4.09
166 167 1.982660 CTCCGGGTGTAGATGCTCTA 58.017 55.000 0.00 0.00 0.00 2.43
167 168 1.883275 CTCCGGGTGTAGATGCTCTAG 59.117 57.143 0.00 0.00 28.01 2.43
168 169 0.315568 CCGGGTGTAGATGCTCTAGC 59.684 60.000 0.00 0.00 42.50 3.42
188 189 1.078848 CTGCTAGACAGGGGTGTGC 60.079 63.158 0.00 0.00 43.19 4.57
189 190 2.125512 GCTAGACAGGGGTGTGCG 60.126 66.667 0.00 0.00 0.00 5.34
190 191 2.943978 GCTAGACAGGGGTGTGCGT 61.944 63.158 0.00 0.00 0.00 5.24
191 192 1.079819 CTAGACAGGGGTGTGCGTG 60.080 63.158 0.00 0.00 0.00 5.34
192 193 1.532078 TAGACAGGGGTGTGCGTGA 60.532 57.895 0.00 0.00 0.00 4.35
193 194 1.812686 TAGACAGGGGTGTGCGTGAC 61.813 60.000 0.00 0.00 0.00 3.67
194 195 4.250305 ACAGGGGTGTGCGTGACC 62.250 66.667 0.00 0.00 0.00 4.02
195 196 3.941188 CAGGGGTGTGCGTGACCT 61.941 66.667 0.00 0.00 33.58 3.85
196 197 3.168528 AGGGGTGTGCGTGACCTT 61.169 61.111 0.00 0.00 33.58 3.50
197 198 2.203294 GGGGTGTGCGTGACCTTT 60.203 61.111 0.00 0.00 33.58 3.11
198 199 1.826487 GGGGTGTGCGTGACCTTTT 60.826 57.895 0.00 0.00 33.58 2.27
199 200 1.388837 GGGGTGTGCGTGACCTTTTT 61.389 55.000 0.00 0.00 33.58 1.94
225 226 9.438228 TTTTTGAAACTTCGGGAAACTTTTATT 57.562 25.926 0.00 0.00 0.00 1.40
226 227 7.995463 TTGAAACTTCGGGAAACTTTTATTG 57.005 32.000 0.00 0.00 0.00 1.90
227 228 6.508777 TGAAACTTCGGGAAACTTTTATTGG 58.491 36.000 0.00 0.00 0.00 3.16
228 229 6.321690 TGAAACTTCGGGAAACTTTTATTGGA 59.678 34.615 0.00 0.00 0.00 3.53
229 230 6.911250 AACTTCGGGAAACTTTTATTGGAT 57.089 33.333 0.00 0.00 0.00 3.41
230 231 6.510879 ACTTCGGGAAACTTTTATTGGATC 57.489 37.500 0.00 0.00 0.00 3.36
231 232 6.007703 ACTTCGGGAAACTTTTATTGGATCA 58.992 36.000 0.00 0.00 0.00 2.92
232 233 6.492087 ACTTCGGGAAACTTTTATTGGATCAA 59.508 34.615 0.00 0.00 0.00 2.57
233 234 6.902771 TCGGGAAACTTTTATTGGATCAAA 57.097 33.333 0.00 0.00 0.00 2.69
234 235 6.683715 TCGGGAAACTTTTATTGGATCAAAC 58.316 36.000 0.00 0.00 0.00 2.93
235 236 5.867174 CGGGAAACTTTTATTGGATCAAACC 59.133 40.000 0.00 0.00 0.00 3.27
236 237 6.517529 CGGGAAACTTTTATTGGATCAAACCA 60.518 38.462 0.00 0.00 38.24 3.67
237 238 6.873605 GGGAAACTTTTATTGGATCAAACCAG 59.126 38.462 0.00 0.00 41.19 4.00
238 239 7.256154 GGGAAACTTTTATTGGATCAAACCAGA 60.256 37.037 0.00 0.00 41.19 3.86
239 240 7.814587 GGAAACTTTTATTGGATCAAACCAGAG 59.185 37.037 0.00 0.00 41.19 3.35
240 241 7.839680 AACTTTTATTGGATCAAACCAGAGT 57.160 32.000 0.00 0.00 41.19 3.24
241 242 7.839680 ACTTTTATTGGATCAAACCAGAGTT 57.160 32.000 0.00 0.00 41.19 3.01
242 243 8.934023 ACTTTTATTGGATCAAACCAGAGTTA 57.066 30.769 0.00 0.00 41.19 2.24
243 244 8.793592 ACTTTTATTGGATCAAACCAGAGTTAC 58.206 33.333 0.00 0.00 41.19 2.50
244 245 8.698973 TTTTATTGGATCAAACCAGAGTTACA 57.301 30.769 0.00 0.00 41.19 2.41
245 246 8.877864 TTTATTGGATCAAACCAGAGTTACAT 57.122 30.769 0.00 0.00 41.19 2.29
246 247 8.506168 TTATTGGATCAAACCAGAGTTACATC 57.494 34.615 0.00 0.00 41.19 3.06
247 248 5.497464 TGGATCAAACCAGAGTTACATCA 57.503 39.130 0.00 0.00 34.19 3.07
248 249 6.065976 TGGATCAAACCAGAGTTACATCAT 57.934 37.500 0.00 0.00 34.19 2.45
249 250 6.115446 TGGATCAAACCAGAGTTACATCATC 58.885 40.000 0.00 0.00 34.19 2.92
250 251 5.529060 GGATCAAACCAGAGTTACATCATCC 59.471 44.000 0.00 0.00 34.19 3.51
251 252 5.497464 TCAAACCAGAGTTACATCATCCA 57.503 39.130 0.00 0.00 34.19 3.41
252 253 5.245531 TCAAACCAGAGTTACATCATCCAC 58.754 41.667 0.00 0.00 34.19 4.02
253 254 5.013079 TCAAACCAGAGTTACATCATCCACT 59.987 40.000 0.00 0.00 34.19 4.00
254 255 6.212589 TCAAACCAGAGTTACATCATCCACTA 59.787 38.462 0.00 0.00 34.19 2.74
255 256 5.860941 ACCAGAGTTACATCATCCACTAG 57.139 43.478 0.00 0.00 0.00 2.57
256 257 5.519808 ACCAGAGTTACATCATCCACTAGA 58.480 41.667 0.00 0.00 0.00 2.43
257 258 5.361285 ACCAGAGTTACATCATCCACTAGAC 59.639 44.000 0.00 0.00 0.00 2.59
258 259 5.506483 CCAGAGTTACATCATCCACTAGACG 60.506 48.000 0.00 0.00 0.00 4.18
259 260 4.580995 AGAGTTACATCATCCACTAGACGG 59.419 45.833 0.00 0.00 0.00 4.79
260 261 3.637229 AGTTACATCATCCACTAGACGGG 59.363 47.826 0.00 0.00 0.00 5.28
261 262 1.414158 ACATCATCCACTAGACGGGG 58.586 55.000 0.00 0.00 0.00 5.73
262 263 0.681733 CATCATCCACTAGACGGGGG 59.318 60.000 0.00 0.00 0.00 5.40
263 264 0.264955 ATCATCCACTAGACGGGGGT 59.735 55.000 0.00 0.00 0.00 4.95
264 265 0.686441 TCATCCACTAGACGGGGGTG 60.686 60.000 0.00 0.00 34.02 4.61
265 266 0.976073 CATCCACTAGACGGGGGTGT 60.976 60.000 0.00 0.00 0.00 4.16
266 267 0.976073 ATCCACTAGACGGGGGTGTG 60.976 60.000 0.00 0.00 0.00 3.82
267 268 2.264794 CACTAGACGGGGGTGTGC 59.735 66.667 0.00 0.00 0.00 4.57
268 269 3.379445 ACTAGACGGGGGTGTGCG 61.379 66.667 0.00 0.00 0.00 5.34
269 270 3.379445 CTAGACGGGGGTGTGCGT 61.379 66.667 0.00 0.00 0.00 5.24
270 271 3.642778 CTAGACGGGGGTGTGCGTG 62.643 68.421 0.00 0.00 0.00 5.34
277 278 3.041940 GGGTGTGCGTGACCTTCG 61.042 66.667 0.00 0.00 33.58 3.79
280 281 1.299926 GTGTGCGTGACCTTCGAGT 60.300 57.895 0.00 0.00 0.00 4.18
310 311 6.808212 GTGTACGTGCTTATTGTTTAGGTAGA 59.192 38.462 4.97 0.00 0.00 2.59
312 313 5.416947 ACGTGCTTATTGTTTAGGTAGAGG 58.583 41.667 0.00 0.00 0.00 3.69
313 314 4.809426 CGTGCTTATTGTTTAGGTAGAGGG 59.191 45.833 0.00 0.00 0.00 4.30
314 315 5.123936 GTGCTTATTGTTTAGGTAGAGGGG 58.876 45.833 0.00 0.00 0.00 4.79
315 316 5.034200 TGCTTATTGTTTAGGTAGAGGGGA 58.966 41.667 0.00 0.00 0.00 4.81
316 317 5.489637 TGCTTATTGTTTAGGTAGAGGGGAA 59.510 40.000 0.00 0.00 0.00 3.97
317 318 6.012333 TGCTTATTGTTTAGGTAGAGGGGAAA 60.012 38.462 0.00 0.00 0.00 3.13
318 319 7.061054 GCTTATTGTTTAGGTAGAGGGGAAAT 58.939 38.462 0.00 0.00 0.00 2.17
319 320 8.215736 GCTTATTGTTTAGGTAGAGGGGAAATA 58.784 37.037 0.00 0.00 0.00 1.40
320 321 9.557061 CTTATTGTTTAGGTAGAGGGGAAATAC 57.443 37.037 0.00 0.00 0.00 1.89
321 322 5.963214 TGTTTAGGTAGAGGGGAAATACC 57.037 43.478 0.00 0.00 39.44 2.73
337 338 2.755469 CCCTTTGGGTCCCGCATG 60.755 66.667 2.65 0.00 38.25 4.06
338 339 2.035626 CCTTTGGGTCCCGCATGT 59.964 61.111 2.65 0.00 0.00 3.21
339 340 1.301623 CCTTTGGGTCCCGCATGTA 59.698 57.895 2.65 0.00 0.00 2.29
340 341 0.106719 CCTTTGGGTCCCGCATGTAT 60.107 55.000 2.65 0.00 0.00 2.29
341 342 1.142060 CCTTTGGGTCCCGCATGTATA 59.858 52.381 2.65 0.00 0.00 1.47
342 343 2.224769 CCTTTGGGTCCCGCATGTATAT 60.225 50.000 2.65 0.00 0.00 0.86
343 344 3.008594 CCTTTGGGTCCCGCATGTATATA 59.991 47.826 2.65 0.00 0.00 0.86
344 345 3.688694 TTGGGTCCCGCATGTATATAC 57.311 47.619 2.65 5.89 0.00 1.47
345 346 2.610873 TGGGTCCCGCATGTATATACA 58.389 47.619 17.65 17.65 40.98 2.29
346 347 2.300723 TGGGTCCCGCATGTATATACAC 59.699 50.000 17.69 5.64 39.30 2.90
347 348 2.565834 GGGTCCCGCATGTATATACACT 59.434 50.000 17.69 5.06 39.30 3.55
348 349 3.368116 GGGTCCCGCATGTATATACACTC 60.368 52.174 17.69 11.07 39.30 3.51
349 350 3.510360 GGTCCCGCATGTATATACACTCT 59.490 47.826 17.69 0.00 39.30 3.24
350 351 4.703575 GGTCCCGCATGTATATACACTCTA 59.296 45.833 17.69 0.00 39.30 2.43
351 352 5.360144 GGTCCCGCATGTATATACACTCTAT 59.640 44.000 17.69 0.00 39.30 1.98
352 353 6.544931 GGTCCCGCATGTATATACACTCTATA 59.455 42.308 17.69 0.79 39.30 1.31
353 354 7.230913 GGTCCCGCATGTATATACACTCTATAT 59.769 40.741 17.69 0.00 39.30 0.86
354 355 8.076781 GTCCCGCATGTATATACACTCTATATG 58.923 40.741 17.69 11.11 39.30 1.78
355 356 7.778382 TCCCGCATGTATATACACTCTATATGT 59.222 37.037 17.69 0.00 39.30 2.29
356 357 8.414003 CCCGCATGTATATACACTCTATATGTT 58.586 37.037 17.69 0.00 39.30 2.71
357 358 9.803315 CCGCATGTATATACACTCTATATGTTT 57.197 33.333 17.69 0.00 39.30 2.83
427 428 9.872757 TTTTAGATTAAACTTGACTTACTTGCG 57.127 29.630 0.00 0.00 0.00 4.85
428 429 5.928153 AGATTAAACTTGACTTACTTGCGC 58.072 37.500 0.00 0.00 0.00 6.09
429 430 5.468746 AGATTAAACTTGACTTACTTGCGCA 59.531 36.000 5.66 5.66 0.00 6.09
430 431 5.682943 TTAAACTTGACTTACTTGCGCAT 57.317 34.783 12.75 0.00 0.00 4.73
431 432 4.568152 AAACTTGACTTACTTGCGCATT 57.432 36.364 12.75 3.63 0.00 3.56
432 433 5.682943 AAACTTGACTTACTTGCGCATTA 57.317 34.783 12.75 2.42 0.00 1.90
433 434 4.928661 ACTTGACTTACTTGCGCATTAG 57.071 40.909 12.75 9.69 0.00 1.73
434 435 4.315803 ACTTGACTTACTTGCGCATTAGT 58.684 39.130 18.09 18.09 0.00 2.24
435 436 5.475719 ACTTGACTTACTTGCGCATTAGTA 58.524 37.500 12.75 14.87 0.00 1.82
436 437 5.347907 ACTTGACTTACTTGCGCATTAGTAC 59.652 40.000 19.03 10.34 0.00 2.73
437 438 4.811908 TGACTTACTTGCGCATTAGTACA 58.188 39.130 19.03 12.44 0.00 2.90
438 439 5.416083 TGACTTACTTGCGCATTAGTACAT 58.584 37.500 19.03 11.49 0.00 2.29
439 440 6.566141 TGACTTACTTGCGCATTAGTACATA 58.434 36.000 19.03 6.68 0.00 2.29
440 441 7.036829 TGACTTACTTGCGCATTAGTACATAA 58.963 34.615 19.03 7.92 0.00 1.90
441 442 7.546316 TGACTTACTTGCGCATTAGTACATAAA 59.454 33.333 19.03 7.60 0.00 1.40
442 443 8.433421 ACTTACTTGCGCATTAGTACATAAAT 57.567 30.769 19.03 0.00 0.00 1.40
443 444 9.537192 ACTTACTTGCGCATTAGTACATAAATA 57.463 29.630 19.03 4.84 0.00 1.40
468 469 6.949578 AAAAACAATGTTGACTTCACAGTG 57.050 33.333 0.00 0.00 35.84 3.66
469 470 5.895636 AAACAATGTTGACTTCACAGTGA 57.104 34.783 0.00 0.00 34.19 3.41
470 471 5.895636 AACAATGTTGACTTCACAGTGAA 57.104 34.783 15.39 15.39 34.19 3.18
471 472 5.895636 ACAATGTTGACTTCACAGTGAAA 57.104 34.783 16.85 1.61 35.73 2.69
472 473 6.266168 ACAATGTTGACTTCACAGTGAAAA 57.734 33.333 16.85 6.16 35.73 2.29
473 474 6.686630 ACAATGTTGACTTCACAGTGAAAAA 58.313 32.000 16.85 9.05 35.73 1.94
474 475 6.586082 ACAATGTTGACTTCACAGTGAAAAAC 59.414 34.615 16.85 18.71 35.73 2.43
475 476 5.697473 TGTTGACTTCACAGTGAAAAACA 57.303 34.783 22.89 22.89 35.73 2.83
476 477 6.266168 TGTTGACTTCACAGTGAAAAACAT 57.734 33.333 22.89 8.30 35.73 2.71
477 478 7.384439 TGTTGACTTCACAGTGAAAAACATA 57.616 32.000 22.89 10.76 35.73 2.29
478 479 7.821652 TGTTGACTTCACAGTGAAAAACATAA 58.178 30.769 22.89 10.58 35.73 1.90
479 480 8.300286 TGTTGACTTCACAGTGAAAAACATAAA 58.700 29.630 22.89 10.06 35.73 1.40
480 481 9.134734 GTTGACTTCACAGTGAAAAACATAAAA 57.865 29.630 16.85 1.70 35.73 1.52
481 482 9.868277 TTGACTTCACAGTGAAAAACATAAAAT 57.132 25.926 16.85 0.00 35.73 1.82
482 483 9.868277 TGACTTCACAGTGAAAAACATAAAATT 57.132 25.926 16.85 0.00 35.73 1.82
564 565 9.586435 TGAAAAGAAGTCAAAGAAGAATTTTCC 57.414 29.630 0.00 0.00 34.71 3.13
565 566 9.809096 GAAAAGAAGTCAAAGAAGAATTTTCCT 57.191 29.630 0.00 0.00 31.29 3.36
569 570 9.591792 AGAAGTCAAAGAAGAATTTTCCTTTTG 57.408 29.630 0.00 5.87 0.00 2.44
570 571 9.371136 GAAGTCAAAGAAGAATTTTCCTTTTGT 57.629 29.630 0.00 0.00 0.00 2.83
571 572 8.707938 AGTCAAAGAAGAATTTTCCTTTTGTG 57.292 30.769 0.00 0.00 0.00 3.33
572 573 8.531146 AGTCAAAGAAGAATTTTCCTTTTGTGA 58.469 29.630 0.00 0.00 0.00 3.58
573 574 9.150348 GTCAAAGAAGAATTTTCCTTTTGTGAA 57.850 29.630 0.00 0.00 0.00 3.18
574 575 9.717942 TCAAAGAAGAATTTTCCTTTTGTGAAA 57.282 25.926 0.00 0.00 0.00 2.69
575 576 9.759259 CAAAGAAGAATTTTCCTTTTGTGAAAC 57.241 29.630 0.00 0.00 31.78 2.78
576 577 9.725019 AAAGAAGAATTTTCCTTTTGTGAAACT 57.275 25.926 0.00 0.00 38.04 2.66
577 578 9.725019 AAGAAGAATTTTCCTTTTGTGAAACTT 57.275 25.926 0.00 0.00 38.04 2.66
578 579 9.725019 AGAAGAATTTTCCTTTTGTGAAACTTT 57.275 25.926 0.00 0.00 38.04 2.66
581 582 9.725019 AGAATTTTCCTTTTGTGAAACTTTTCT 57.275 25.926 3.48 0.00 38.02 2.52
582 583 9.973246 GAATTTTCCTTTTGTGAAACTTTTCTC 57.027 29.630 3.48 0.70 38.02 2.87
583 584 9.500785 AATTTTCCTTTTGTGAAACTTTTCTCA 57.499 25.926 3.48 3.23 38.46 3.27
584 585 7.883229 TTTCCTTTTGTGAAACTTTTCTCAC 57.117 32.000 6.07 0.00 39.51 3.51
585 586 6.834168 TCCTTTTGTGAAACTTTTCTCACT 57.166 33.333 6.07 0.00 42.06 3.41
586 587 7.931578 TCCTTTTGTGAAACTTTTCTCACTA 57.068 32.000 6.07 0.00 42.06 2.74
587 588 7.985476 TCCTTTTGTGAAACTTTTCTCACTAG 58.015 34.615 6.07 6.64 42.06 2.57
588 589 7.610305 TCCTTTTGTGAAACTTTTCTCACTAGT 59.390 33.333 6.07 0.00 42.06 2.57
589 590 8.889717 CCTTTTGTGAAACTTTTCTCACTAGTA 58.110 33.333 0.00 0.00 42.06 1.82
590 591 9.704098 CTTTTGTGAAACTTTTCTCACTAGTAC 57.296 33.333 0.00 0.00 42.06 2.73
591 592 8.780846 TTTGTGAAACTTTTCTCACTAGTACA 57.219 30.769 0.00 0.00 42.06 2.90
592 593 8.780846 TTGTGAAACTTTTCTCACTAGTACAA 57.219 30.769 0.00 0.00 42.06 2.41
593 594 8.958119 TGTGAAACTTTTCTCACTAGTACAAT 57.042 30.769 0.00 0.00 42.06 2.71
594 595 8.826710 TGTGAAACTTTTCTCACTAGTACAATG 58.173 33.333 0.00 0.00 42.06 2.82
595 596 9.042008 GTGAAACTTTTCTCACTAGTACAATGA 57.958 33.333 0.00 0.00 39.11 2.57
596 597 9.607988 TGAAACTTTTCTCACTAGTACAATGAA 57.392 29.630 0.00 0.00 38.02 2.57
599 600 8.608844 ACTTTTCTCACTAGTACAATGAAAGG 57.391 34.615 0.00 5.64 0.00 3.11
600 601 8.211629 ACTTTTCTCACTAGTACAATGAAAGGT 58.788 33.333 0.00 6.20 31.01 3.50
601 602 8.603242 TTTTCTCACTAGTACAATGAAAGGTC 57.397 34.615 0.00 0.00 0.00 3.85
602 603 6.911250 TCTCACTAGTACAATGAAAGGTCA 57.089 37.500 0.00 0.00 38.41 4.02
603 604 7.297936 TCTCACTAGTACAATGAAAGGTCAA 57.702 36.000 0.00 0.00 37.30 3.18
604 605 7.378966 TCTCACTAGTACAATGAAAGGTCAAG 58.621 38.462 0.00 0.00 37.30 3.02
605 606 7.015292 TCTCACTAGTACAATGAAAGGTCAAGT 59.985 37.037 0.00 0.00 37.30 3.16
606 607 7.506114 TCACTAGTACAATGAAAGGTCAAGTT 58.494 34.615 0.00 0.00 37.30 2.66
607 608 7.990886 TCACTAGTACAATGAAAGGTCAAGTTT 59.009 33.333 0.00 0.00 37.30 2.66
608 609 9.268268 CACTAGTACAATGAAAGGTCAAGTTTA 57.732 33.333 0.00 0.00 37.30 2.01
612 613 9.574516 AGTACAATGAAAGGTCAAGTTTATCTT 57.425 29.630 0.00 0.00 37.30 2.40
688 689 8.010697 TCCATATAGGATACATATGTACCCAGG 58.989 40.741 25.48 17.92 43.07 4.45
689 690 8.010697 CCATATAGGATACATATGTACCCAGGA 58.989 40.741 25.48 12.35 36.61 3.86
690 691 9.434275 CATATAGGATACATATGTACCCAGGAA 57.566 37.037 25.48 10.26 36.61 3.36
691 692 7.735326 ATAGGATACATATGTACCCAGGAAC 57.265 40.000 25.48 7.63 36.61 3.62
692 693 4.844655 AGGATACATATGTACCCAGGAACC 59.155 45.833 25.48 9.39 36.61 3.62
693 694 4.595781 GGATACATATGTACCCAGGAACCA 59.404 45.833 20.00 0.00 34.19 3.67
694 695 5.072600 GGATACATATGTACCCAGGAACCAA 59.927 44.000 20.00 0.00 34.19 3.67
695 696 4.938575 ACATATGTACCCAGGAACCAAA 57.061 40.909 6.56 0.00 0.00 3.28
696 697 4.595986 ACATATGTACCCAGGAACCAAAC 58.404 43.478 6.56 0.00 0.00 2.93
697 698 4.043561 ACATATGTACCCAGGAACCAAACA 59.956 41.667 6.56 0.00 0.00 2.83
698 699 3.825908 ATGTACCCAGGAACCAAACAT 57.174 42.857 0.00 0.00 0.00 2.71
699 700 3.603965 TGTACCCAGGAACCAAACATT 57.396 42.857 0.00 0.00 0.00 2.71
700 701 3.492337 TGTACCCAGGAACCAAACATTC 58.508 45.455 0.00 0.00 0.00 2.67
701 702 2.009681 ACCCAGGAACCAAACATTCC 57.990 50.000 0.00 0.00 45.23 3.01
702 703 1.266178 CCCAGGAACCAAACATTCCC 58.734 55.000 0.12 0.00 45.91 3.97
703 704 1.266178 CCAGGAACCAAACATTCCCC 58.734 55.000 0.12 0.00 45.91 4.81
704 705 1.203174 CCAGGAACCAAACATTCCCCT 60.203 52.381 0.12 0.00 45.91 4.79
705 706 2.171003 CAGGAACCAAACATTCCCCTC 58.829 52.381 0.12 0.00 45.91 4.30
706 707 1.077169 AGGAACCAAACATTCCCCTCC 59.923 52.381 0.12 0.00 45.91 4.30
707 708 1.557099 GAACCAAACATTCCCCTCCC 58.443 55.000 0.00 0.00 0.00 4.30
708 709 0.863956 AACCAAACATTCCCCTCCCA 59.136 50.000 0.00 0.00 0.00 4.37
709 710 1.092549 ACCAAACATTCCCCTCCCAT 58.907 50.000 0.00 0.00 0.00 4.00
796 801 7.222000 TGCGGGAATTGTTCTTATTTTAGTT 57.778 32.000 0.00 0.00 0.00 2.24
797 802 7.662897 TGCGGGAATTGTTCTTATTTTAGTTT 58.337 30.769 0.00 0.00 0.00 2.66
808 813 9.394477 GTTCTTATTTTAGTTTGGTAGCACTTG 57.606 33.333 0.00 0.00 0.00 3.16
841 847 7.315890 AGCAACTTGAAATAATTTACAGGAGC 58.684 34.615 0.00 0.00 0.00 4.70
845 851 6.719370 ACTTGAAATAATTTACAGGAGCACCA 59.281 34.615 2.07 0.00 38.94 4.17
895 901 8.736244 TGTAAATTACTAATTCTCTTTGGCCAC 58.264 33.333 3.88 0.00 0.00 5.01
954 961 3.578716 GCTGCTGTATCCCTGGACTAATA 59.421 47.826 0.00 0.00 0.00 0.98
973 980 2.082140 ACAGTCCACACTCCACACTA 57.918 50.000 0.00 0.00 0.00 2.74
988 995 3.491619 CCACACTATCAATCACCGAGGAG 60.492 52.174 0.00 0.00 0.00 3.69
1340 1381 2.881352 GGCTTCGCGTTCCTCTCG 60.881 66.667 5.77 0.00 0.00 4.04
1341 1382 2.881352 GCTTCGCGTTCCTCTCGG 60.881 66.667 5.77 0.00 0.00 4.63
1342 1383 2.202623 CTTCGCGTTCCTCTCGGG 60.203 66.667 5.77 0.00 41.36 5.14
1343 1384 4.430765 TTCGCGTTCCTCTCGGGC 62.431 66.667 5.77 0.00 40.19 6.13
1345 1386 4.856607 CGCGTTCCTCTCGGGCTC 62.857 72.222 0.00 0.00 34.88 4.70
1346 1387 3.453679 GCGTTCCTCTCGGGCTCT 61.454 66.667 0.00 0.00 34.39 4.09
1347 1388 2.802106 CGTTCCTCTCGGGCTCTC 59.198 66.667 0.00 0.00 34.39 3.20
1348 1389 2.802106 GTTCCTCTCGGGCTCTCG 59.198 66.667 0.00 0.00 34.39 4.04
1423 1464 2.175322 GTCGTCGTCTCCGTCACC 59.825 66.667 0.00 0.00 35.01 4.02
1424 1465 2.031616 TCGTCGTCTCCGTCACCT 59.968 61.111 0.00 0.00 35.01 4.00
1425 1466 2.031516 TCGTCGTCTCCGTCACCTC 61.032 63.158 0.00 0.00 35.01 3.85
1426 1467 2.322830 CGTCGTCTCCGTCACCTCA 61.323 63.158 0.00 0.00 35.01 3.86
1427 1468 1.209640 GTCGTCTCCGTCACCTCAC 59.790 63.158 0.00 0.00 35.01 3.51
1547 1594 4.753662 CCCGGTCGACCTCTCCCA 62.754 72.222 30.92 0.00 0.00 4.37
1875 1937 2.193786 GTGGTGGTCGGTGGGTTT 59.806 61.111 0.00 0.00 0.00 3.27
2056 6389 1.066573 AGAGCACCTCTTCCATTCACG 60.067 52.381 0.00 0.00 37.60 4.35
2082 6415 0.669318 CGGCTGCCTGAAACGAACTA 60.669 55.000 17.92 0.00 0.00 2.24
2091 6424 4.755411 CCTGAAACGAACTAGCATTCCTA 58.245 43.478 0.00 0.00 0.00 2.94
2098 6431 6.481434 ACGAACTAGCATTCCTATAAGGTT 57.519 37.500 0.00 0.00 36.53 3.50
2158 6491 4.153655 CGTCGAAGGATTATATCGGTGAGA 59.846 45.833 0.00 0.00 37.20 3.27
2178 6511 0.390340 TTGAGATGAGCAGCCGTGTC 60.390 55.000 0.00 0.00 0.00 3.67
2192 6525 1.335182 CCGTGTCATATCGCTGAGACT 59.665 52.381 7.69 0.00 37.30 3.24
2194 6527 2.032178 CGTGTCATATCGCTGAGACTGA 59.968 50.000 7.69 0.00 37.30 3.41
2195 6528 3.367607 GTGTCATATCGCTGAGACTGAC 58.632 50.000 14.73 14.73 41.55 3.51
2301 8113 4.308526 CAGCCGGCTGATTTCAGT 57.691 55.556 46.72 12.57 46.30 3.41
2302 8114 2.559785 CAGCCGGCTGATTTCAGTT 58.440 52.632 46.72 11.69 46.30 3.16
2306 8142 0.804989 CCGGCTGATTTCAGTTGTCC 59.195 55.000 9.21 1.48 45.45 4.02
2323 8159 1.275291 GTCCGATTCAGTCCCTCACAA 59.725 52.381 0.00 0.00 0.00 3.33
2344 8180 5.212194 CAACCGTTTGATTGGTCAACTTAG 58.788 41.667 0.00 0.00 43.72 2.18
2348 8184 5.643777 CCGTTTGATTGGTCAACTTAGAGAT 59.356 40.000 0.00 0.00 43.72 2.75
2361 8197 5.049398 ACTTAGAGATGTGTCGTTCTCAC 57.951 43.478 3.08 0.00 40.69 3.51
2391 8227 0.606604 TCTGCGTTGTTACCCTCCTC 59.393 55.000 0.00 0.00 0.00 3.71
2397 8233 1.891150 GTTGTTACCCTCCTCGTCTCA 59.109 52.381 0.00 0.00 0.00 3.27
2413 8249 2.854032 CACCCCCACACTCACCCT 60.854 66.667 0.00 0.00 0.00 4.34
2423 8260 2.065799 ACACTCACCCTCCTTTTCCAT 58.934 47.619 0.00 0.00 0.00 3.41
2431 8268 1.522668 CTCCTTTTCCATGCACACGA 58.477 50.000 0.00 0.00 0.00 4.35
2432 8269 1.466167 CTCCTTTTCCATGCACACGAG 59.534 52.381 0.00 0.00 0.00 4.18
2435 8272 1.879380 CTTTTCCATGCACACGAGGAA 59.121 47.619 0.00 0.00 38.31 3.36
2440 8277 3.268103 ATGCACACGAGGAACCCCC 62.268 63.158 0.00 0.00 0.00 5.40
2441 8278 3.948719 GCACACGAGGAACCCCCA 61.949 66.667 0.00 0.00 37.41 4.96
2444 8281 2.073716 ACACGAGGAACCCCCAACA 61.074 57.895 0.00 0.00 37.41 3.33
2451 8288 1.971695 GAACCCCCAACAAGCTCCG 60.972 63.158 0.00 0.00 0.00 4.63
2473 8310 0.036010 CGAGAGGCCATGAAGGTTGT 60.036 55.000 5.01 0.00 40.61 3.32
2476 8313 1.561542 AGAGGCCATGAAGGTTGTAGG 59.438 52.381 5.01 0.00 40.61 3.18
2477 8314 0.034089 AGGCCATGAAGGTTGTAGGC 60.034 55.000 5.01 0.00 40.61 3.93
2478 8315 2.493547 GCCATGAAGGTTGTAGGCC 58.506 57.895 0.00 0.00 40.61 5.19
2479 8316 0.034089 GCCATGAAGGTTGTAGGCCT 60.034 55.000 11.78 11.78 40.61 5.19
2480 8317 1.755179 CCATGAAGGTTGTAGGCCTG 58.245 55.000 17.99 0.00 36.30 4.85
2481 8318 1.098050 CATGAAGGTTGTAGGCCTGC 58.902 55.000 17.99 16.33 36.30 4.85
2482 8319 0.698238 ATGAAGGTTGTAGGCCTGCA 59.302 50.000 20.78 20.78 45.15 4.41
2483 8320 0.036732 TGAAGGTTGTAGGCCTGCAG 59.963 55.000 23.30 6.78 36.77 4.41
2484 8321 1.303643 AAGGTTGTAGGCCTGCAGC 60.304 57.895 26.06 26.06 42.60 5.25
2485 8322 3.127533 GGTTGTAGGCCTGCAGCG 61.128 66.667 26.66 2.70 45.17 5.18
2486 8323 3.804193 GTTGTAGGCCTGCAGCGC 61.804 66.667 23.30 13.33 45.17 5.92
2507 8344 0.527565 GTGATCCGCCTTGCAACAAT 59.472 50.000 0.00 0.00 0.00 2.71
2545 8382 4.781959 CGCCACCGCTGCAAATGG 62.782 66.667 8.93 8.93 35.17 3.16
2547 8384 4.440127 CCACCGCTGCAAATGGCC 62.440 66.667 0.00 0.00 43.89 5.36
2548 8385 4.781959 CACCGCTGCAAATGGCCG 62.782 66.667 0.00 0.00 43.89 6.13
2554 8391 3.652539 CTGCAAATGGCCGCCCTTG 62.653 63.158 7.03 11.59 43.89 3.61
2556 8393 3.693471 CAAATGGCCGCCCTTGCA 61.693 61.111 7.03 0.00 37.32 4.08
2557 8394 3.384532 AAATGGCCGCCCTTGCAG 61.385 61.111 7.03 0.00 37.32 4.41
2567 8404 4.335647 CCTTGCAGCACCCTCGGT 62.336 66.667 0.00 0.00 35.62 4.69
2586 8423 2.824041 CCTTCCCCCGCAACATCG 60.824 66.667 0.00 0.00 0.00 3.84
2587 8424 2.046314 CTTCCCCCGCAACATCGT 60.046 61.111 0.00 0.00 0.00 3.73
2627 8465 1.230149 TGTAGCCCCCTCCCACAAT 60.230 57.895 0.00 0.00 0.00 2.71
2631 8469 2.043652 CCCCCTCCCACAATGCAG 60.044 66.667 0.00 0.00 0.00 4.41
2633 8471 2.357836 CCCTCCCACAATGCAGCT 59.642 61.111 0.00 0.00 0.00 4.24
2637 8475 0.957395 CTCCCACAATGCAGCTTCGT 60.957 55.000 0.00 0.00 0.00 3.85
2640 8478 1.568612 CCACAATGCAGCTTCGTCGT 61.569 55.000 0.00 0.00 0.00 4.34
2643 8481 1.080772 AATGCAGCTTCGTCGTCGA 60.081 52.632 0.00 0.00 44.66 4.20
2653 8491 1.869574 CGTCGTCGAGTCATGGCAG 60.870 63.158 0.00 0.00 39.71 4.85
2665 8503 1.828595 TCATGGCAGCTCATTTGCAAT 59.171 42.857 0.00 0.00 43.28 3.56
2666 8504 1.933181 CATGGCAGCTCATTTGCAATG 59.067 47.619 0.00 1.04 44.12 2.82
2675 8513 1.894466 TCATTTGCAATGGACCACCTG 59.106 47.619 0.00 0.00 37.04 4.00
2681 8519 1.892329 GCAATGGACCACCTGTTCCAT 60.892 52.381 0.00 0.00 44.07 3.41
2689 8527 1.407437 CCACCTGTTCCATGTAGCTCC 60.407 57.143 0.00 0.00 0.00 4.70
2690 8528 1.278985 CACCTGTTCCATGTAGCTCCA 59.721 52.381 0.00 0.00 0.00 3.86
2691 8529 1.279271 ACCTGTTCCATGTAGCTCCAC 59.721 52.381 0.00 0.00 0.00 4.02
2695 8533 0.981183 TTCCATGTAGCTCCACCGTT 59.019 50.000 0.00 0.00 0.00 4.44
2696 8534 1.855295 TCCATGTAGCTCCACCGTTA 58.145 50.000 0.00 0.00 0.00 3.18
2699 8537 1.134818 CATGTAGCTCCACCGTTAGCA 60.135 52.381 0.00 0.00 41.32 3.49
2705 8543 0.676466 CTCCACCGTTAGCATGGCAA 60.676 55.000 0.00 0.00 33.20 4.52
2726 8564 2.305927 ACAACTGGTACCATTGCTAGCT 59.694 45.455 24.87 11.38 0.00 3.32
2746 8584 1.597854 CAACACAGCTCTTCCGCCA 60.598 57.895 0.00 0.00 0.00 5.69
2753 8591 3.207669 CTCTTCCGCCAGCCATGC 61.208 66.667 0.00 0.00 0.00 4.06
2754 8592 3.982316 CTCTTCCGCCAGCCATGCA 62.982 63.158 0.00 0.00 0.00 3.96
2755 8593 2.831742 CTTCCGCCAGCCATGCAT 60.832 61.111 0.00 0.00 0.00 3.96
2756 8594 3.133767 CTTCCGCCAGCCATGCATG 62.134 63.158 20.19 20.19 0.00 4.06
2784 8622 0.811915 TCGTAGCTCTCTCCTGTTGC 59.188 55.000 0.00 0.00 0.00 4.17
2796 8634 1.626654 CCTGTTGCAACGTAGCTCCG 61.627 60.000 23.79 0.00 34.99 4.63
2798 8636 0.942410 TGTTGCAACGTAGCTCCGTC 60.942 55.000 23.79 0.00 40.85 4.79
2803 8641 1.951510 AACGTAGCTCCGTCGTTGA 59.048 52.632 4.31 0.00 44.18 3.18
2805 8643 1.208358 CGTAGCTCCGTCGTTGACA 59.792 57.895 0.00 0.00 32.09 3.58
2809 8647 2.027073 GCTCCGTCGTTGACATGCA 61.027 57.895 0.00 0.00 32.09 3.96
2829 8667 0.108377 ACAATGTCGCCGTAGCATCA 60.108 50.000 0.00 0.00 39.83 3.07
2833 8671 1.314730 TGTCGCCGTAGCATCATCTA 58.685 50.000 0.00 0.00 39.83 1.98
2836 8674 1.266989 TCGCCGTAGCATCATCTACTG 59.733 52.381 0.00 0.00 39.83 2.74
2849 8687 3.937079 TCATCTACTGCAATGCAACTCTG 59.063 43.478 9.92 0.00 38.41 3.35
2881 8719 1.929836 GGCAACAACTCATAGCTCTCG 59.070 52.381 0.00 0.00 0.00 4.04
2890 8728 2.429767 ATAGCTCTCGCCTGCTGCA 61.430 57.895 0.88 0.88 41.33 4.41
2906 8744 2.465920 CAACGCAGCTTCGTCGTC 59.534 61.111 12.77 0.00 42.46 4.20
2907 8745 3.097728 AACGCAGCTTCGTCGTCG 61.098 61.111 12.77 0.00 42.46 5.12
2922 8760 1.672356 GTCGGTGTGGAGCAGCATT 60.672 57.895 0.00 0.00 45.25 3.56
2925 8763 1.878775 GGTGTGGAGCAGCATTGTC 59.121 57.895 0.00 0.00 44.44 3.18
2933 8771 1.260033 GAGCAGCATTGTCGTAGCATC 59.740 52.381 0.00 0.00 0.00 3.91
2939 8777 0.175760 ATTGTCGTAGCATCGCCTGT 59.824 50.000 0.00 0.00 0.00 4.00
2941 8779 0.735978 TGTCGTAGCATCGCCTGTTG 60.736 55.000 0.00 0.00 0.00 3.33
2949 8787 0.386352 CATCGCCTGTTGCAACACAG 60.386 55.000 27.96 21.67 43.46 3.66
2975 8813 4.809496 CCGGCCATGGAAGCAGCT 62.809 66.667 18.40 0.00 0.00 4.24
2998 8836 3.312973 CGTAGCCTCTCCTACTGTAACAG 59.687 52.174 0.00 0.00 36.41 3.16
2999 8837 3.741245 AGCCTCTCCTACTGTAACAGA 57.259 47.619 0.00 0.00 35.18 3.41
3014 8852 1.797933 CAGAGCTTCGTCGTCGGTG 60.798 63.158 1.55 0.00 37.69 4.94
3019 8857 3.834447 CTTCGTCGTCGGTGTGGCA 62.834 63.158 1.55 0.00 37.69 4.92
3020 8858 3.834447 TTCGTCGTCGGTGTGGCAG 62.834 63.158 1.55 0.00 37.69 4.85
3021 8859 4.640855 CGTCGTCGGTGTGGCAGT 62.641 66.667 0.00 0.00 0.00 4.40
3023 8861 1.443872 GTCGTCGGTGTGGCAGTAG 60.444 63.158 0.00 0.00 0.00 2.57
3030 8868 1.084370 GGTGTGGCAGTAGCGTCATC 61.084 60.000 0.00 0.00 43.41 2.92
3035 8873 0.935366 GGCAGTAGCGTCATCGTAGC 60.935 60.000 0.00 0.00 43.41 3.58
3058 8896 2.103042 CCTGCTGCAACGTAGCTCC 61.103 63.158 10.01 0.00 41.66 4.70
3059 8897 1.374631 CTGCTGCAACGTAGCTCCA 60.375 57.895 10.01 0.00 41.66 3.86
3061 8899 1.374758 GCTGCAACGTAGCTCCACT 60.375 57.895 1.49 0.00 38.14 4.00
3066 8904 3.296709 AACGTAGCTCCACTGCCGG 62.297 63.158 0.00 0.00 0.00 6.13
3068 8906 4.082523 GTAGCTCCACTGCCGGCA 62.083 66.667 30.59 30.59 0.00 5.69
3073 8911 3.925630 CTCCACTGCCGGCAATGGT 62.926 63.158 45.27 31.14 43.13 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 2.169769 TGTTGGAAATACGCCCTAGAGG 59.830 50.000 0.00 0.00 39.47 3.69
44 45 3.118738 ACTGTTGGAAATACGCCCTAGAG 60.119 47.826 0.00 0.00 0.00 2.43
45 46 2.835764 ACTGTTGGAAATACGCCCTAGA 59.164 45.455 0.00 0.00 0.00 2.43
46 47 3.261981 ACTGTTGGAAATACGCCCTAG 57.738 47.619 0.00 0.00 0.00 3.02
47 48 3.706600 AACTGTTGGAAATACGCCCTA 57.293 42.857 0.00 0.00 0.00 3.53
48 49 2.579410 AACTGTTGGAAATACGCCCT 57.421 45.000 0.00 0.00 0.00 5.19
49 50 3.653539 AAAACTGTTGGAAATACGCCC 57.346 42.857 0.00 0.00 0.00 6.13
50 51 5.110940 TGTAAAACTGTTGGAAATACGCC 57.889 39.130 0.00 0.00 0.00 5.68
51 52 5.151389 CCTGTAAAACTGTTGGAAATACGC 58.849 41.667 0.00 0.00 0.00 4.42
52 53 6.017770 TGACCTGTAAAACTGTTGGAAATACG 60.018 38.462 0.00 0.00 0.00 3.06
53 54 7.266922 TGACCTGTAAAACTGTTGGAAATAC 57.733 36.000 0.00 0.00 0.00 1.89
54 55 7.558444 ACTTGACCTGTAAAACTGTTGGAAATA 59.442 33.333 0.00 0.00 0.00 1.40
55 56 6.379988 ACTTGACCTGTAAAACTGTTGGAAAT 59.620 34.615 0.00 0.00 0.00 2.17
56 57 5.712917 ACTTGACCTGTAAAACTGTTGGAAA 59.287 36.000 0.00 0.00 0.00 3.13
57 58 5.258051 ACTTGACCTGTAAAACTGTTGGAA 58.742 37.500 0.00 0.00 0.00 3.53
58 59 4.850680 ACTTGACCTGTAAAACTGTTGGA 58.149 39.130 0.00 0.00 0.00 3.53
59 60 5.339990 CAACTTGACCTGTAAAACTGTTGG 58.660 41.667 0.00 0.00 31.67 3.77
60 61 5.124776 TCCAACTTGACCTGTAAAACTGTTG 59.875 40.000 0.00 0.00 34.07 3.33
61 62 5.258051 TCCAACTTGACCTGTAAAACTGTT 58.742 37.500 0.00 0.00 0.00 3.16
62 63 4.850680 TCCAACTTGACCTGTAAAACTGT 58.149 39.130 0.00 0.00 0.00 3.55
63 64 5.278463 CCATCCAACTTGACCTGTAAAACTG 60.278 44.000 0.00 0.00 0.00 3.16
64 65 4.827284 CCATCCAACTTGACCTGTAAAACT 59.173 41.667 0.00 0.00 0.00 2.66
65 66 4.583073 ACCATCCAACTTGACCTGTAAAAC 59.417 41.667 0.00 0.00 0.00 2.43
66 67 4.798882 ACCATCCAACTTGACCTGTAAAA 58.201 39.130 0.00 0.00 0.00 1.52
67 68 4.447138 ACCATCCAACTTGACCTGTAAA 57.553 40.909 0.00 0.00 0.00 2.01
68 69 4.595781 AGTACCATCCAACTTGACCTGTAA 59.404 41.667 0.00 0.00 0.00 2.41
69 70 4.164981 AGTACCATCCAACTTGACCTGTA 58.835 43.478 0.00 0.00 0.00 2.74
70 71 2.979678 AGTACCATCCAACTTGACCTGT 59.020 45.455 0.00 0.00 0.00 4.00
71 72 3.703001 AGTACCATCCAACTTGACCTG 57.297 47.619 0.00 0.00 0.00 4.00
72 73 4.724279 AAAGTACCATCCAACTTGACCT 57.276 40.909 0.00 0.00 36.12 3.85
73 74 5.048713 CAGAAAAGTACCATCCAACTTGACC 60.049 44.000 0.00 0.00 36.12 4.02
74 75 5.531287 ACAGAAAAGTACCATCCAACTTGAC 59.469 40.000 0.00 0.00 36.12 3.18
75 76 5.690865 ACAGAAAAGTACCATCCAACTTGA 58.309 37.500 0.00 0.00 36.12 3.02
76 77 5.048713 GGACAGAAAAGTACCATCCAACTTG 60.049 44.000 0.00 0.00 36.12 3.16
77 78 5.070685 GGACAGAAAAGTACCATCCAACTT 58.929 41.667 0.00 0.00 37.54 2.66
78 79 4.652822 GGACAGAAAAGTACCATCCAACT 58.347 43.478 0.00 0.00 0.00 3.16
79 80 3.435671 CGGACAGAAAAGTACCATCCAAC 59.564 47.826 0.00 0.00 0.00 3.77
80 81 3.071892 ACGGACAGAAAAGTACCATCCAA 59.928 43.478 0.00 0.00 0.00 3.53
81 82 2.635915 ACGGACAGAAAAGTACCATCCA 59.364 45.455 0.00 0.00 0.00 3.41
82 83 3.000727 CACGGACAGAAAAGTACCATCC 58.999 50.000 0.00 0.00 0.00 3.51
83 84 2.415512 GCACGGACAGAAAAGTACCATC 59.584 50.000 0.00 0.00 0.00 3.51
84 85 2.224426 TGCACGGACAGAAAAGTACCAT 60.224 45.455 0.00 0.00 0.00 3.55
85 86 1.139256 TGCACGGACAGAAAAGTACCA 59.861 47.619 0.00 0.00 0.00 3.25
86 87 1.798813 CTGCACGGACAGAAAAGTACC 59.201 52.381 0.94 0.00 40.25 3.34
87 88 2.221055 CACTGCACGGACAGAAAAGTAC 59.779 50.000 13.19 0.00 40.25 2.73
88 89 2.101750 TCACTGCACGGACAGAAAAGTA 59.898 45.455 13.19 0.00 40.25 2.24
89 90 1.134521 TCACTGCACGGACAGAAAAGT 60.135 47.619 13.19 0.00 40.25 2.66
90 91 1.261619 GTCACTGCACGGACAGAAAAG 59.738 52.381 13.19 1.88 40.25 2.27
91 92 1.295792 GTCACTGCACGGACAGAAAA 58.704 50.000 13.19 0.00 40.25 2.29
92 93 0.531974 GGTCACTGCACGGACAGAAA 60.532 55.000 13.19 0.00 40.25 2.52
93 94 1.069090 GGTCACTGCACGGACAGAA 59.931 57.895 13.19 0.00 40.25 3.02
94 95 2.734591 GGTCACTGCACGGACAGA 59.265 61.111 13.19 0.00 40.25 3.41
95 96 2.734723 CGGTCACTGCACGGACAG 60.735 66.667 13.36 5.50 43.59 3.51
100 101 2.734723 CTGTCCGGTCACTGCACG 60.735 66.667 0.00 0.00 0.00 5.34
101 102 3.044305 GCTGTCCGGTCACTGCAC 61.044 66.667 16.99 0.70 40.12 4.57
102 103 4.314440 GGCTGTCCGGTCACTGCA 62.314 66.667 21.42 0.00 41.67 4.41
114 115 4.922026 AAACGTTCGGGCGGCTGT 62.922 61.111 18.34 1.72 35.98 4.40
115 116 4.383602 CAAACGTTCGGGCGGCTG 62.384 66.667 12.43 12.43 35.98 4.85
118 119 4.020378 CACCAAACGTTCGGGCGG 62.020 66.667 10.61 4.82 35.98 6.13
119 120 4.676586 GCACCAAACGTTCGGGCG 62.677 66.667 10.61 6.42 37.94 6.13
120 121 4.676586 CGCACCAAACGTTCGGGC 62.677 66.667 10.61 11.13 0.00 6.13
121 122 4.020378 CCGCACCAAACGTTCGGG 62.020 66.667 10.61 13.32 46.20 5.14
123 124 0.791422 TTATCCGCACCAAACGTTCG 59.209 50.000 0.00 0.00 0.00 3.95
124 125 1.129811 CCTTATCCGCACCAAACGTTC 59.870 52.381 0.00 0.00 0.00 3.95
125 126 1.161843 CCTTATCCGCACCAAACGTT 58.838 50.000 0.00 0.00 0.00 3.99
126 127 0.675522 CCCTTATCCGCACCAAACGT 60.676 55.000 0.00 0.00 0.00 3.99
127 128 1.373590 CCCCTTATCCGCACCAAACG 61.374 60.000 0.00 0.00 0.00 3.60
128 129 1.663379 GCCCCTTATCCGCACCAAAC 61.663 60.000 0.00 0.00 0.00 2.93
129 130 1.379309 GCCCCTTATCCGCACCAAA 60.379 57.895 0.00 0.00 0.00 3.28
130 131 2.265467 GAGCCCCTTATCCGCACCAA 62.265 60.000 0.00 0.00 0.00 3.67
131 132 2.690881 AGCCCCTTATCCGCACCA 60.691 61.111 0.00 0.00 0.00 4.17
132 133 2.111251 GAGCCCCTTATCCGCACC 59.889 66.667 0.00 0.00 0.00 5.01
133 134 2.111251 GGAGCCCCTTATCCGCAC 59.889 66.667 0.00 0.00 0.00 5.34
137 138 2.447959 ACCCGGAGCCCCTTATCC 60.448 66.667 0.73 0.00 0.00 2.59
138 139 0.761702 TACACCCGGAGCCCCTTATC 60.762 60.000 0.73 0.00 0.00 1.75
139 140 0.763223 CTACACCCGGAGCCCCTTAT 60.763 60.000 0.73 0.00 0.00 1.73
140 141 1.382146 CTACACCCGGAGCCCCTTA 60.382 63.158 0.73 0.00 0.00 2.69
141 142 2.547123 ATCTACACCCGGAGCCCCTT 62.547 60.000 0.73 0.00 0.00 3.95
142 143 3.023045 ATCTACACCCGGAGCCCCT 62.023 63.158 0.73 0.00 0.00 4.79
143 144 2.446036 ATCTACACCCGGAGCCCC 60.446 66.667 0.73 0.00 0.00 5.80
144 145 2.822399 CATCTACACCCGGAGCCC 59.178 66.667 0.73 0.00 0.00 5.19
145 146 2.109181 GCATCTACACCCGGAGCC 59.891 66.667 0.73 0.00 0.00 4.70
146 147 1.068250 GAGCATCTACACCCGGAGC 59.932 63.158 0.73 0.00 0.00 4.70
165 166 0.041238 ACCCCTGTCTAGCAGTGCTA 59.959 55.000 23.14 23.14 43.55 3.49
166 167 1.229336 ACCCCTGTCTAGCAGTGCT 60.229 57.895 23.44 23.44 43.55 4.40
167 168 1.078848 CACCCCTGTCTAGCAGTGC 60.079 63.158 7.13 7.13 43.55 4.40
168 169 0.036952 CACACCCCTGTCTAGCAGTG 60.037 60.000 11.57 7.87 43.55 3.66
169 170 1.831652 GCACACCCCTGTCTAGCAGT 61.832 60.000 11.57 0.00 43.55 4.40
170 171 1.078848 GCACACCCCTGTCTAGCAG 60.079 63.158 7.07 7.07 44.63 4.24
171 172 2.942796 CGCACACCCCTGTCTAGCA 61.943 63.158 0.00 0.00 0.00 3.49
172 173 2.125512 CGCACACCCCTGTCTAGC 60.126 66.667 0.00 0.00 0.00 3.42
173 174 1.079819 CACGCACACCCCTGTCTAG 60.080 63.158 0.00 0.00 0.00 2.43
174 175 1.532078 TCACGCACACCCCTGTCTA 60.532 57.895 0.00 0.00 0.00 2.59
175 176 2.842462 TCACGCACACCCCTGTCT 60.842 61.111 0.00 0.00 0.00 3.41
176 177 2.665185 GTCACGCACACCCCTGTC 60.665 66.667 0.00 0.00 0.00 3.51
177 178 4.250305 GGTCACGCACACCCCTGT 62.250 66.667 0.00 0.00 0.00 4.00
178 179 2.958578 AAAGGTCACGCACACCCCTG 62.959 60.000 0.00 0.00 33.96 4.45
179 180 2.279037 AAAAGGTCACGCACACCCCT 62.279 55.000 0.00 0.00 33.96 4.79
180 181 1.388837 AAAAAGGTCACGCACACCCC 61.389 55.000 0.00 0.00 33.96 4.95
181 182 2.112029 AAAAAGGTCACGCACACCC 58.888 52.632 0.00 0.00 33.96 4.61
199 200 9.438228 AATAAAAGTTTCCCGAAGTTTCAAAAA 57.562 25.926 0.00 0.00 39.40 1.94
200 201 8.874816 CAATAAAAGTTTCCCGAAGTTTCAAAA 58.125 29.630 0.00 0.00 39.40 2.44
201 202 7.492994 CCAATAAAAGTTTCCCGAAGTTTCAAA 59.507 33.333 0.00 0.00 39.40 2.69
202 203 6.981559 CCAATAAAAGTTTCCCGAAGTTTCAA 59.018 34.615 0.00 0.00 39.40 2.69
203 204 6.321690 TCCAATAAAAGTTTCCCGAAGTTTCA 59.678 34.615 0.00 0.00 39.40 2.69
204 205 6.741109 TCCAATAAAAGTTTCCCGAAGTTTC 58.259 36.000 0.00 0.00 39.40 2.78
205 206 6.718522 TCCAATAAAAGTTTCCCGAAGTTT 57.281 33.333 0.00 0.00 41.51 2.66
206 207 6.492087 TGATCCAATAAAAGTTTCCCGAAGTT 59.508 34.615 0.00 0.00 32.23 2.66
207 208 6.007703 TGATCCAATAAAAGTTTCCCGAAGT 58.992 36.000 0.00 0.00 0.00 3.01
208 209 6.509418 TGATCCAATAAAAGTTTCCCGAAG 57.491 37.500 0.00 0.00 0.00 3.79
209 210 6.902771 TTGATCCAATAAAAGTTTCCCGAA 57.097 33.333 0.00 0.00 0.00 4.30
210 211 6.294843 GGTTTGATCCAATAAAAGTTTCCCGA 60.295 38.462 0.00 0.00 0.00 5.14
211 212 5.867174 GGTTTGATCCAATAAAAGTTTCCCG 59.133 40.000 0.00 0.00 0.00 5.14
212 213 6.764379 TGGTTTGATCCAATAAAAGTTTCCC 58.236 36.000 0.00 0.00 34.24 3.97
213 214 7.666623 TCTGGTTTGATCCAATAAAAGTTTCC 58.333 34.615 0.00 0.00 37.01 3.13
214 215 8.360390 ACTCTGGTTTGATCCAATAAAAGTTTC 58.640 33.333 0.00 0.00 37.01 2.78
215 216 8.250143 ACTCTGGTTTGATCCAATAAAAGTTT 57.750 30.769 0.00 0.00 37.01 2.66
216 217 7.839680 ACTCTGGTTTGATCCAATAAAAGTT 57.160 32.000 0.00 0.00 37.01 2.66
217 218 7.839680 AACTCTGGTTTGATCCAATAAAAGT 57.160 32.000 0.00 0.00 37.01 2.66
218 219 8.792633 TGTAACTCTGGTTTGATCCAATAAAAG 58.207 33.333 0.00 0.00 37.01 2.27
219 220 8.698973 TGTAACTCTGGTTTGATCCAATAAAA 57.301 30.769 0.00 0.00 37.01 1.52
220 221 8.877864 ATGTAACTCTGGTTTGATCCAATAAA 57.122 30.769 0.00 0.00 37.01 1.40
221 222 8.106462 TGATGTAACTCTGGTTTGATCCAATAA 58.894 33.333 0.00 0.00 37.01 1.40
222 223 7.629157 TGATGTAACTCTGGTTTGATCCAATA 58.371 34.615 0.00 0.00 37.01 1.90
223 224 6.484288 TGATGTAACTCTGGTTTGATCCAAT 58.516 36.000 0.00 0.00 37.01 3.16
224 225 5.875224 TGATGTAACTCTGGTTTGATCCAA 58.125 37.500 0.00 0.00 37.01 3.53
225 226 5.497464 TGATGTAACTCTGGTTTGATCCA 57.503 39.130 0.00 0.00 36.92 3.41
226 227 5.529060 GGATGATGTAACTCTGGTTTGATCC 59.471 44.000 0.00 0.00 36.92 3.36
227 228 6.037610 GTGGATGATGTAACTCTGGTTTGATC 59.962 42.308 0.00 0.00 36.92 2.92
228 229 5.882557 GTGGATGATGTAACTCTGGTTTGAT 59.117 40.000 0.00 0.00 36.92 2.57
229 230 5.013079 AGTGGATGATGTAACTCTGGTTTGA 59.987 40.000 0.00 0.00 36.92 2.69
230 231 5.248640 AGTGGATGATGTAACTCTGGTTTG 58.751 41.667 0.00 0.00 36.92 2.93
231 232 5.505181 AGTGGATGATGTAACTCTGGTTT 57.495 39.130 0.00 0.00 36.92 3.27
232 233 5.958380 TCTAGTGGATGATGTAACTCTGGTT 59.042 40.000 0.00 0.00 39.26 3.67
233 234 5.361285 GTCTAGTGGATGATGTAACTCTGGT 59.639 44.000 0.00 0.00 0.00 4.00
234 235 5.506483 CGTCTAGTGGATGATGTAACTCTGG 60.506 48.000 0.00 0.00 32.95 3.86
235 236 5.506483 CCGTCTAGTGGATGATGTAACTCTG 60.506 48.000 0.00 0.00 32.95 3.35
236 237 4.580995 CCGTCTAGTGGATGATGTAACTCT 59.419 45.833 0.00 0.00 32.95 3.24
237 238 4.261656 CCCGTCTAGTGGATGATGTAACTC 60.262 50.000 0.00 0.00 32.95 3.01
238 239 3.637229 CCCGTCTAGTGGATGATGTAACT 59.363 47.826 0.00 0.00 32.95 2.24
239 240 3.243771 CCCCGTCTAGTGGATGATGTAAC 60.244 52.174 0.00 0.00 32.95 2.50
240 241 2.963101 CCCCGTCTAGTGGATGATGTAA 59.037 50.000 0.00 0.00 32.95 2.41
241 242 2.594131 CCCCGTCTAGTGGATGATGTA 58.406 52.381 0.00 0.00 32.95 2.29
242 243 1.414158 CCCCGTCTAGTGGATGATGT 58.586 55.000 0.00 0.00 32.95 3.06
243 244 0.681733 CCCCCGTCTAGTGGATGATG 59.318 60.000 0.00 0.00 32.95 3.07
244 245 0.264955 ACCCCCGTCTAGTGGATGAT 59.735 55.000 0.00 0.00 32.95 2.45
245 246 0.686441 CACCCCCGTCTAGTGGATGA 60.686 60.000 0.00 0.00 32.95 2.92
246 247 0.976073 ACACCCCCGTCTAGTGGATG 60.976 60.000 5.49 0.00 35.79 3.51
247 248 0.976073 CACACCCCCGTCTAGTGGAT 60.976 60.000 5.49 0.00 35.79 3.41
248 249 1.608336 CACACCCCCGTCTAGTGGA 60.608 63.158 5.49 0.00 35.79 4.02
249 250 2.978824 CACACCCCCGTCTAGTGG 59.021 66.667 0.00 0.00 35.79 4.00
250 251 2.264794 GCACACCCCCGTCTAGTG 59.735 66.667 0.00 0.00 37.53 2.74
251 252 3.379445 CGCACACCCCCGTCTAGT 61.379 66.667 0.00 0.00 0.00 2.57
252 253 3.379445 ACGCACACCCCCGTCTAG 61.379 66.667 0.00 0.00 31.00 2.43
253 254 3.687102 CACGCACACCCCCGTCTA 61.687 66.667 0.00 0.00 35.17 2.59
258 259 4.265056 AAGGTCACGCACACCCCC 62.265 66.667 0.00 0.00 33.96 5.40
259 260 2.668550 GAAGGTCACGCACACCCC 60.669 66.667 0.00 0.00 33.96 4.95
260 261 3.041940 CGAAGGTCACGCACACCC 61.042 66.667 0.00 0.00 33.96 4.61
261 262 2.022129 CTCGAAGGTCACGCACACC 61.022 63.158 0.00 0.00 0.00 4.16
262 263 1.299926 ACTCGAAGGTCACGCACAC 60.300 57.895 0.00 0.00 0.00 3.82
263 264 1.299850 CACTCGAAGGTCACGCACA 60.300 57.895 0.00 0.00 0.00 4.57
264 265 2.022129 CCACTCGAAGGTCACGCAC 61.022 63.158 0.00 0.00 0.00 5.34
265 266 2.023414 AACCACTCGAAGGTCACGCA 62.023 55.000 9.43 0.00 38.76 5.24
266 267 1.300697 AACCACTCGAAGGTCACGC 60.301 57.895 9.43 0.00 38.76 5.34
267 268 0.249322 ACAACCACTCGAAGGTCACG 60.249 55.000 9.43 4.90 38.76 4.35
268 269 1.217882 CACAACCACTCGAAGGTCAC 58.782 55.000 9.43 0.00 38.76 3.67
269 270 0.828022 ACACAACCACTCGAAGGTCA 59.172 50.000 9.43 0.00 38.76 4.02
270 271 2.401351 GTACACAACCACTCGAAGGTC 58.599 52.381 9.43 0.00 38.76 3.85
277 278 1.578583 AAGCACGTACACAACCACTC 58.421 50.000 0.00 0.00 0.00 3.51
280 281 3.468770 ACAATAAGCACGTACACAACCA 58.531 40.909 0.00 0.00 0.00 3.67
321 322 0.106719 ATACATGCGGGACCCAAAGG 60.107 55.000 12.15 1.58 40.04 3.11
322 323 2.631160 TATACATGCGGGACCCAAAG 57.369 50.000 12.15 0.00 0.00 2.77
323 324 3.391626 TGTATATACATGCGGGACCCAAA 59.608 43.478 11.62 0.00 0.00 3.28
324 325 2.973406 TGTATATACATGCGGGACCCAA 59.027 45.455 11.62 0.00 0.00 4.12
325 326 2.300723 GTGTATATACATGCGGGACCCA 59.699 50.000 18.27 0.00 38.63 4.51
326 327 2.565834 AGTGTATATACATGCGGGACCC 59.434 50.000 18.27 0.00 38.63 4.46
327 328 3.510360 AGAGTGTATATACATGCGGGACC 59.490 47.826 18.27 3.62 38.63 4.46
328 329 4.785511 AGAGTGTATATACATGCGGGAC 57.214 45.455 18.27 4.31 38.63 4.46
329 330 7.778382 ACATATAGAGTGTATATACATGCGGGA 59.222 37.037 18.27 4.71 38.63 5.14
330 331 7.941919 ACATATAGAGTGTATATACATGCGGG 58.058 38.462 18.27 6.92 38.63 6.13
331 332 9.803315 AAACATATAGAGTGTATATACATGCGG 57.197 33.333 18.27 6.38 38.63 5.69
401 402 9.872757 CGCAAGTAAGTCAAGTTTAATCTAAAA 57.127 29.630 0.00 0.00 0.00 1.52
402 403 8.013378 GCGCAAGTAAGTCAAGTTTAATCTAAA 58.987 33.333 0.30 0.00 41.68 1.85
403 404 7.171848 TGCGCAAGTAAGTCAAGTTTAATCTAA 59.828 33.333 8.16 0.00 41.68 2.10
404 405 6.647481 TGCGCAAGTAAGTCAAGTTTAATCTA 59.353 34.615 8.16 0.00 41.68 1.98
405 406 5.468746 TGCGCAAGTAAGTCAAGTTTAATCT 59.531 36.000 8.16 0.00 41.68 2.40
406 407 5.685841 TGCGCAAGTAAGTCAAGTTTAATC 58.314 37.500 8.16 0.00 41.68 1.75
407 408 5.682943 TGCGCAAGTAAGTCAAGTTTAAT 57.317 34.783 8.16 0.00 41.68 1.40
408 409 5.682943 ATGCGCAAGTAAGTCAAGTTTAA 57.317 34.783 17.11 0.00 41.68 1.52
409 410 5.682943 AATGCGCAAGTAAGTCAAGTTTA 57.317 34.783 17.11 0.00 41.68 2.01
410 411 4.568152 AATGCGCAAGTAAGTCAAGTTT 57.432 36.364 17.11 0.00 41.68 2.66
411 412 4.755123 ACTAATGCGCAAGTAAGTCAAGTT 59.245 37.500 17.11 1.25 41.68 2.66
412 413 4.315803 ACTAATGCGCAAGTAAGTCAAGT 58.684 39.130 17.11 1.67 41.68 3.16
413 414 4.928661 ACTAATGCGCAAGTAAGTCAAG 57.071 40.909 17.11 0.99 41.68 3.02
414 415 5.231702 TGTACTAATGCGCAAGTAAGTCAA 58.768 37.500 20.50 8.65 41.68 3.18
415 416 4.811908 TGTACTAATGCGCAAGTAAGTCA 58.188 39.130 20.50 13.18 41.68 3.41
416 417 5.968387 ATGTACTAATGCGCAAGTAAGTC 57.032 39.130 20.50 11.10 41.68 3.01
417 418 7.837202 TTTATGTACTAATGCGCAAGTAAGT 57.163 32.000 20.50 18.89 41.68 2.24
445 446 6.686630 TCACTGTGAAGTCAACATTGTTTTT 58.313 32.000 8.27 0.00 0.00 1.94
446 447 6.266168 TCACTGTGAAGTCAACATTGTTTT 57.734 33.333 8.27 0.00 0.00 2.43
447 448 5.895636 TCACTGTGAAGTCAACATTGTTT 57.104 34.783 8.27 0.00 0.00 2.83
448 449 5.895636 TTCACTGTGAAGTCAACATTGTT 57.104 34.783 18.69 0.00 31.83 2.83
449 450 5.895636 TTTCACTGTGAAGTCAACATTGT 57.104 34.783 21.13 0.00 37.70 2.71
450 451 6.585702 TGTTTTTCACTGTGAAGTCAACATTG 59.414 34.615 25.38 0.00 37.70 2.82
451 452 6.686630 TGTTTTTCACTGTGAAGTCAACATT 58.313 32.000 25.38 0.00 37.70 2.71
452 453 6.266168 TGTTTTTCACTGTGAAGTCAACAT 57.734 33.333 25.38 0.00 37.70 2.71
453 454 5.697473 TGTTTTTCACTGTGAAGTCAACA 57.303 34.783 25.38 25.38 37.70 3.33
454 455 8.682128 TTTATGTTTTTCACTGTGAAGTCAAC 57.318 30.769 21.13 21.99 37.70 3.18
455 456 9.868277 ATTTTATGTTTTTCACTGTGAAGTCAA 57.132 25.926 21.13 11.77 37.70 3.18
456 457 9.868277 AATTTTATGTTTTTCACTGTGAAGTCA 57.132 25.926 21.13 19.68 37.70 3.41
538 539 9.586435 GGAAAATTCTTCTTTGACTTCTTTTCA 57.414 29.630 0.00 0.00 33.78 2.69
539 540 9.809096 AGGAAAATTCTTCTTTGACTTCTTTTC 57.191 29.630 0.00 0.00 32.22 2.29
543 544 9.591792 CAAAAGGAAAATTCTTCTTTGACTTCT 57.408 29.630 0.00 0.00 30.89 2.85
544 545 9.371136 ACAAAAGGAAAATTCTTCTTTGACTTC 57.629 29.630 15.43 0.00 30.89 3.01
545 546 9.154847 CACAAAAGGAAAATTCTTCTTTGACTT 57.845 29.630 15.43 0.00 30.89 3.01
546 547 8.531146 TCACAAAAGGAAAATTCTTCTTTGACT 58.469 29.630 15.43 0.00 30.89 3.41
547 548 8.702163 TCACAAAAGGAAAATTCTTCTTTGAC 57.298 30.769 15.43 0.00 30.89 3.18
548 549 9.717942 TTTCACAAAAGGAAAATTCTTCTTTGA 57.282 25.926 15.43 0.00 31.72 2.69
549 550 9.759259 GTTTCACAAAAGGAAAATTCTTCTTTG 57.241 29.630 0.00 10.65 36.14 2.77
550 551 9.725019 AGTTTCACAAAAGGAAAATTCTTCTTT 57.275 25.926 0.00 0.00 36.14 2.52
551 552 9.725019 AAGTTTCACAAAAGGAAAATTCTTCTT 57.275 25.926 0.00 0.00 37.86 2.52
552 553 9.725019 AAAGTTTCACAAAAGGAAAATTCTTCT 57.275 25.926 0.00 0.00 40.40 2.85
555 556 9.725019 AGAAAAGTTTCACAAAAGGAAAATTCT 57.275 25.926 6.56 0.00 40.40 2.40
556 557 9.973246 GAGAAAAGTTTCACAAAAGGAAAATTC 57.027 29.630 6.56 0.00 40.40 2.17
557 558 9.500785 TGAGAAAAGTTTCACAAAAGGAAAATT 57.499 25.926 6.56 0.00 42.30 1.82
558 559 8.935844 GTGAGAAAAGTTTCACAAAAGGAAAAT 58.064 29.630 5.63 0.00 42.47 1.82
559 560 8.147704 AGTGAGAAAAGTTTCACAAAAGGAAAA 58.852 29.630 8.50 0.00 44.72 2.29
560 561 7.666623 AGTGAGAAAAGTTTCACAAAAGGAAA 58.333 30.769 8.50 0.00 44.72 3.13
561 562 7.227049 AGTGAGAAAAGTTTCACAAAAGGAA 57.773 32.000 8.50 0.00 44.72 3.36
562 563 6.834168 AGTGAGAAAAGTTTCACAAAAGGA 57.166 33.333 8.50 0.00 44.72 3.36
563 564 7.762382 ACTAGTGAGAAAAGTTTCACAAAAGG 58.238 34.615 8.50 1.41 44.72 3.11
564 565 9.704098 GTACTAGTGAGAAAAGTTTCACAAAAG 57.296 33.333 5.39 8.29 44.72 2.27
565 566 9.221933 TGTACTAGTGAGAAAAGTTTCACAAAA 57.778 29.630 5.39 0.00 44.72 2.44
566 567 8.780846 TGTACTAGTGAGAAAAGTTTCACAAA 57.219 30.769 5.39 0.00 44.72 2.83
567 568 8.780846 TTGTACTAGTGAGAAAAGTTTCACAA 57.219 30.769 5.39 0.22 44.72 3.33
568 569 8.826710 CATTGTACTAGTGAGAAAAGTTTCACA 58.173 33.333 5.39 3.47 44.72 3.58
569 570 9.042008 TCATTGTACTAGTGAGAAAAGTTTCAC 57.958 33.333 5.39 0.87 43.08 3.18
570 571 9.607988 TTCATTGTACTAGTGAGAAAAGTTTCA 57.392 29.630 5.39 0.00 39.61 2.69
573 574 9.057089 CCTTTCATTGTACTAGTGAGAAAAGTT 57.943 33.333 5.39 0.00 0.00 2.66
574 575 8.211629 ACCTTTCATTGTACTAGTGAGAAAAGT 58.788 33.333 5.39 5.87 0.00 2.66
575 576 8.608844 ACCTTTCATTGTACTAGTGAGAAAAG 57.391 34.615 5.39 7.74 0.00 2.27
576 577 8.208224 TGACCTTTCATTGTACTAGTGAGAAAA 58.792 33.333 5.39 0.00 0.00 2.29
577 578 7.732025 TGACCTTTCATTGTACTAGTGAGAAA 58.268 34.615 5.39 7.55 0.00 2.52
578 579 7.297936 TGACCTTTCATTGTACTAGTGAGAA 57.702 36.000 5.39 0.00 0.00 2.87
579 580 6.911250 TGACCTTTCATTGTACTAGTGAGA 57.089 37.500 5.39 0.00 0.00 3.27
580 581 7.155328 ACTTGACCTTTCATTGTACTAGTGAG 58.845 38.462 5.39 0.00 0.00 3.51
581 582 7.062749 ACTTGACCTTTCATTGTACTAGTGA 57.937 36.000 5.39 0.00 0.00 3.41
582 583 7.730364 AACTTGACCTTTCATTGTACTAGTG 57.270 36.000 5.39 0.00 0.00 2.74
586 587 9.574516 AAGATAAACTTGACCTTTCATTGTACT 57.425 29.630 0.00 0.00 37.45 2.73
671 672 5.818678 TGGTTCCTGGGTACATATGTATC 57.181 43.478 18.27 17.37 32.54 2.24
672 673 6.069323 TGTTTGGTTCCTGGGTACATATGTAT 60.069 38.462 18.27 0.00 32.54 2.29
673 674 5.251005 TGTTTGGTTCCTGGGTACATATGTA 59.749 40.000 11.62 11.62 0.00 2.29
674 675 4.043561 TGTTTGGTTCCTGGGTACATATGT 59.956 41.667 13.93 13.93 0.00 2.29
675 676 4.594970 TGTTTGGTTCCTGGGTACATATG 58.405 43.478 0.00 0.00 0.00 1.78
676 677 4.938575 TGTTTGGTTCCTGGGTACATAT 57.061 40.909 0.00 0.00 0.00 1.78
677 678 4.938575 ATGTTTGGTTCCTGGGTACATA 57.061 40.909 0.00 0.00 0.00 2.29
678 679 3.825908 ATGTTTGGTTCCTGGGTACAT 57.174 42.857 0.00 0.00 0.00 2.29
679 680 3.492337 GAATGTTTGGTTCCTGGGTACA 58.508 45.455 0.00 0.00 0.00 2.90
680 681 2.823747 GGAATGTTTGGTTCCTGGGTAC 59.176 50.000 0.00 0.00 41.52 3.34
681 682 2.225167 GGGAATGTTTGGTTCCTGGGTA 60.225 50.000 5.04 0.00 43.70 3.69
682 683 1.482365 GGGAATGTTTGGTTCCTGGGT 60.482 52.381 5.04 0.00 43.70 4.51
683 684 1.266178 GGGAATGTTTGGTTCCTGGG 58.734 55.000 5.04 0.00 43.70 4.45
684 685 1.203174 AGGGGAATGTTTGGTTCCTGG 60.203 52.381 5.04 0.00 43.70 4.45
685 686 2.171003 GAGGGGAATGTTTGGTTCCTG 58.829 52.381 5.04 0.00 43.70 3.86
686 687 1.077169 GGAGGGGAATGTTTGGTTCCT 59.923 52.381 5.04 0.00 43.70 3.36
687 688 1.557099 GGAGGGGAATGTTTGGTTCC 58.443 55.000 0.00 0.00 43.52 3.62
688 689 1.203125 TGGGAGGGGAATGTTTGGTTC 60.203 52.381 0.00 0.00 0.00 3.62
689 690 0.863956 TGGGAGGGGAATGTTTGGTT 59.136 50.000 0.00 0.00 0.00 3.67
690 691 1.092549 ATGGGAGGGGAATGTTTGGT 58.907 50.000 0.00 0.00 0.00 3.67
691 692 1.273211 ACATGGGAGGGGAATGTTTGG 60.273 52.381 0.00 0.00 30.41 3.28
692 693 1.826720 CACATGGGAGGGGAATGTTTG 59.173 52.381 0.00 0.00 32.27 2.93
693 694 1.273211 CCACATGGGAGGGGAATGTTT 60.273 52.381 0.00 0.00 40.01 2.83
694 695 0.336048 CCACATGGGAGGGGAATGTT 59.664 55.000 0.00 0.00 40.01 2.71
695 696 0.850883 ACCACATGGGAGGGGAATGT 60.851 55.000 0.00 0.00 41.15 2.71
696 697 1.221635 TACCACATGGGAGGGGAATG 58.778 55.000 0.00 0.00 41.15 2.67
697 698 2.228978 ATACCACATGGGAGGGGAAT 57.771 50.000 0.00 0.00 41.15 3.01
698 699 1.994399 AATACCACATGGGAGGGGAA 58.006 50.000 0.00 0.00 41.15 3.97
699 700 2.899906 TAATACCACATGGGAGGGGA 57.100 50.000 0.00 0.00 41.15 4.81
700 701 3.963476 TTTAATACCACATGGGAGGGG 57.037 47.619 0.00 0.00 41.15 4.79
701 702 5.476945 GCTATTTTAATACCACATGGGAGGG 59.523 44.000 0.00 0.00 41.15 4.30
702 703 6.068010 TGCTATTTTAATACCACATGGGAGG 58.932 40.000 0.00 0.00 41.15 4.30
703 704 7.581213 TTGCTATTTTAATACCACATGGGAG 57.419 36.000 0.00 0.00 41.15 4.30
704 705 7.563188 ACATTGCTATTTTAATACCACATGGGA 59.437 33.333 0.00 0.00 41.15 4.37
705 706 7.725251 ACATTGCTATTTTAATACCACATGGG 58.275 34.615 2.32 0.00 44.81 4.00
706 707 9.033481 CAACATTGCTATTTTAATACCACATGG 57.967 33.333 0.00 0.00 42.17 3.66
756 761 7.883229 ATTCCCGCAAACAAATAAGTAAAAG 57.117 32.000 0.00 0.00 0.00 2.27
760 765 6.334102 ACAATTCCCGCAAACAAATAAGTA 57.666 33.333 0.00 0.00 0.00 2.24
761 766 5.208463 ACAATTCCCGCAAACAAATAAGT 57.792 34.783 0.00 0.00 0.00 2.24
762 767 5.925969 AGAACAATTCCCGCAAACAAATAAG 59.074 36.000 0.00 0.00 0.00 1.73
765 770 4.335400 AGAACAATTCCCGCAAACAAAT 57.665 36.364 0.00 0.00 0.00 2.32
767 772 3.810310 AAGAACAATTCCCGCAAACAA 57.190 38.095 0.00 0.00 0.00 2.83
769 774 6.779115 AAAATAAGAACAATTCCCGCAAAC 57.221 33.333 0.00 0.00 0.00 2.93
796 801 3.753272 GCTTTGAGATCAAGTGCTACCAA 59.247 43.478 12.37 0.00 37.15 3.67
797 802 3.244526 TGCTTTGAGATCAAGTGCTACCA 60.245 43.478 17.34 2.38 37.72 3.25
841 847 7.078969 GCATGTTGCACACAATAATGTGGTG 62.079 44.000 15.20 11.25 46.84 4.17
954 961 2.082140 TAGTGTGGAGTGTGGACTGT 57.918 50.000 0.00 0.00 30.16 3.55
959 966 3.935203 GTGATTGATAGTGTGGAGTGTGG 59.065 47.826 0.00 0.00 0.00 4.17
967 974 3.491619 CCTCCTCGGTGATTGATAGTGTG 60.492 52.174 0.00 0.00 0.00 3.82
973 980 1.418334 CTCCCTCCTCGGTGATTGAT 58.582 55.000 0.00 0.00 0.00 2.57
988 995 1.147153 CCTCCATTTCGCTCCTCCC 59.853 63.158 0.00 0.00 0.00 4.30
989 996 1.524849 GCCTCCATTTCGCTCCTCC 60.525 63.158 0.00 0.00 0.00 4.30
1528 1575 4.437587 GGAGAGGTCGACCGGGGA 62.438 72.222 28.26 0.00 42.08 4.81
1716 1778 3.112075 CGCATGTTCACGAGCGGT 61.112 61.111 7.67 0.00 45.83 5.68
1875 1937 2.519622 CCAGTCCTGCAGTGGGTCA 61.520 63.158 13.81 0.00 41.59 4.02
2074 6407 6.481434 ACCTTATAGGAATGCTAGTTCGTT 57.519 37.500 0.00 0.00 37.67 3.85
2082 6415 6.069615 ACCACTTACAACCTTATAGGAATGCT 60.070 38.462 0.00 0.00 37.67 3.79
2091 6424 3.007614 ACGCAGACCACTTACAACCTTAT 59.992 43.478 0.00 0.00 0.00 1.73
2098 6431 1.037493 AGTGACGCAGACCACTTACA 58.963 50.000 0.00 0.00 40.48 2.41
2136 6469 5.624344 TCTCACCGATATAATCCTTCGAC 57.376 43.478 0.00 0.00 34.92 4.20
2158 6491 0.251354 ACACGGCTGCTCATCTCAAT 59.749 50.000 0.00 0.00 0.00 2.57
2178 6511 3.427161 TGTGTCAGTCTCAGCGATATG 57.573 47.619 0.00 0.00 0.00 1.78
2228 8038 8.489489 AGTTATCAGGACATAATTCATGAGTGT 58.511 33.333 0.00 0.21 39.52 3.55
2249 8059 6.013639 AGCCGCCCTTACATATAGAAAGTTAT 60.014 38.462 0.00 0.00 0.00 1.89
2293 8105 4.093556 GGACTGAATCGGACAACTGAAATC 59.906 45.833 0.00 0.00 34.89 2.17
2298 8110 1.276421 AGGGACTGAATCGGACAACTG 59.724 52.381 0.00 0.00 37.18 3.16
2301 8113 1.275291 GTGAGGGACTGAATCGGACAA 59.725 52.381 0.00 0.00 41.55 3.18
2302 8114 0.895530 GTGAGGGACTGAATCGGACA 59.104 55.000 0.00 0.00 41.55 4.02
2306 8142 1.726853 GGTTGTGAGGGACTGAATCG 58.273 55.000 0.00 0.00 41.55 3.34
2323 8159 4.710324 TCTAAGTTGACCAATCAAACGGT 58.290 39.130 0.00 0.00 46.40 4.83
2344 8180 0.985549 GCGTGAGAACGACACATCTC 59.014 55.000 1.87 0.00 41.95 2.75
2348 8184 1.476235 CGTTGCGTGAGAACGACACA 61.476 55.000 1.87 0.00 42.75 3.72
2377 8213 1.891150 TGAGACGAGGAGGGTAACAAC 59.109 52.381 0.00 0.00 39.74 3.32
2379 8215 1.542492 GTGAGACGAGGAGGGTAACA 58.458 55.000 0.00 0.00 39.74 2.41
2391 8227 2.207229 TGAGTGTGGGGGTGAGACG 61.207 63.158 0.00 0.00 0.00 4.18
2397 8233 2.529389 GAGGGTGAGTGTGGGGGT 60.529 66.667 0.00 0.00 0.00 4.95
2413 8249 1.522668 CTCGTGTGCATGGAAAAGGA 58.477 50.000 0.00 0.00 0.00 3.36
2423 8260 3.948719 GGGGGTTCCTCGTGTGCA 61.949 66.667 0.00 0.00 0.00 4.57
2431 8268 1.460699 GAGCTTGTTGGGGGTTCCT 59.539 57.895 0.00 0.00 36.20 3.36
2432 8269 1.606601 GGAGCTTGTTGGGGGTTCC 60.607 63.158 0.00 0.00 0.00 3.62
2435 8272 3.966543 CCGGAGCTTGTTGGGGGT 61.967 66.667 0.00 0.00 0.00 4.95
2440 8277 3.121030 CTCGCCCGGAGCTTGTTG 61.121 66.667 0.73 0.00 40.39 3.33
2441 8278 3.302347 CTCTCGCCCGGAGCTTGTT 62.302 63.158 0.73 0.00 42.82 2.83
2458 8295 0.034089 GCCTACAACCTTCATGGCCT 60.034 55.000 3.32 0.00 40.22 5.19
2461 8298 1.755179 CAGGCCTACAACCTTCATGG 58.245 55.000 3.98 0.00 42.93 3.66
2486 8323 2.745884 TTGCAAGGCGGATCACGG 60.746 61.111 0.00 0.00 44.51 4.94
2488 8325 0.527565 ATTGTTGCAAGGCGGATCAC 59.472 50.000 0.00 0.00 0.00 3.06
2530 8367 4.440127 GGCCATTTGCAGCGGTGG 62.440 66.667 17.54 0.00 43.89 4.61
2536 8373 3.384532 AAGGGCGGCCATTTGCAG 61.385 61.111 31.59 0.00 43.89 4.41
2539 8376 3.652539 CTGCAAGGGCGGCCATTTG 62.653 63.158 31.59 25.83 45.35 2.32
2540 8377 3.384532 CTGCAAGGGCGGCCATTT 61.385 61.111 31.59 14.22 45.35 2.32
2566 8403 4.966787 TGTTGCGGGGGAAGGCAC 62.967 66.667 0.00 0.00 39.20 5.01
2567 8404 3.936772 GATGTTGCGGGGGAAGGCA 62.937 63.158 0.00 0.00 37.39 4.75
2568 8405 3.140814 GATGTTGCGGGGGAAGGC 61.141 66.667 0.00 0.00 0.00 4.35
2571 8408 2.046700 GACGATGTTGCGGGGGAA 60.047 61.111 0.00 0.00 35.12 3.97
2572 8409 4.444838 CGACGATGTTGCGGGGGA 62.445 66.667 0.00 0.00 35.12 4.81
2591 8428 2.590007 GCCTGGCTGCCATAGTCG 60.590 66.667 23.64 9.97 32.16 4.18
2592 8429 2.914289 AGCCTGGCTGCCATAGTC 59.086 61.111 23.64 11.23 37.57 2.59
2611 8449 2.689691 GCATTGTGGGAGGGGGCTA 61.690 63.158 0.00 0.00 0.00 3.93
2618 8456 0.957395 ACGAAGCTGCATTGTGGGAG 60.957 55.000 1.02 0.00 0.00 4.30
2622 8460 0.179240 GACGACGAAGCTGCATTGTG 60.179 55.000 0.00 0.00 0.00 3.33
2623 8461 1.617755 CGACGACGAAGCTGCATTGT 61.618 55.000 0.00 0.00 42.66 2.71
2637 8475 2.181777 GCTGCCATGACTCGACGA 59.818 61.111 0.00 0.00 0.00 4.20
2640 8478 0.538584 AATGAGCTGCCATGACTCGA 59.461 50.000 0.00 0.00 32.98 4.04
2643 8481 0.815734 GCAAATGAGCTGCCATGACT 59.184 50.000 0.00 0.00 33.51 3.41
2653 8491 1.404583 GGTGGTCCATTGCAAATGAGC 60.405 52.381 18.53 18.53 0.00 4.26
2675 8513 0.249398 ACGGTGGAGCTACATGGAAC 59.751 55.000 0.00 0.00 0.00 3.62
2681 8519 1.134818 CATGCTAACGGTGGAGCTACA 60.135 52.381 14.28 0.00 39.54 2.74
2689 8527 0.595588 TTGTTGCCATGCTAACGGTG 59.404 50.000 6.02 0.00 0.00 4.94
2690 8528 0.596082 GTTGTTGCCATGCTAACGGT 59.404 50.000 6.02 0.00 0.00 4.83
2691 8529 0.881118 AGTTGTTGCCATGCTAACGG 59.119 50.000 6.02 0.00 0.00 4.44
2695 8533 2.432444 GTACCAGTTGTTGCCATGCTA 58.568 47.619 0.00 0.00 0.00 3.49
2696 8534 1.247567 GTACCAGTTGTTGCCATGCT 58.752 50.000 0.00 0.00 0.00 3.79
2699 8537 2.562298 CAATGGTACCAGTTGTTGCCAT 59.438 45.455 21.41 0.00 40.80 4.40
2705 8543 2.305927 AGCTAGCAATGGTACCAGTTGT 59.694 45.455 21.41 9.48 0.00 3.32
2726 8564 2.253758 GCGGAAGAGCTGTGTTGCA 61.254 57.895 0.00 0.00 34.99 4.08
2733 8571 3.694058 ATGGCTGGCGGAAGAGCTG 62.694 63.158 0.00 0.00 35.42 4.24
2753 8591 2.532256 GCTACGAGCTGCTGCCATG 61.532 63.158 7.01 4.93 38.45 3.66
2754 8592 2.202987 GCTACGAGCTGCTGCCAT 60.203 61.111 7.01 0.52 38.45 4.40
2766 8604 0.528017 TGCAACAGGAGAGAGCTACG 59.472 55.000 0.00 0.00 0.00 3.51
2803 8641 1.209898 CGGCGACATTGTTGCATGT 59.790 52.632 26.26 1.68 44.12 3.21
2805 8643 0.726827 CTACGGCGACATTGTTGCAT 59.273 50.000 26.26 17.48 44.12 3.96
2809 8647 1.006832 GATGCTACGGCGACATTGTT 58.993 50.000 16.62 0.00 42.25 2.83
2819 8657 2.800881 TGCAGTAGATGATGCTACGG 57.199 50.000 0.00 0.00 44.21 4.02
2855 8693 2.954318 GCTATGAGTTGTTGCCATGGAT 59.046 45.455 18.40 0.00 0.00 3.41
2856 8694 2.025981 AGCTATGAGTTGTTGCCATGGA 60.026 45.455 18.40 0.00 0.00 3.41
2890 8728 3.097728 CGACGACGAAGCTGCGTT 61.098 61.111 23.29 6.07 45.72 4.84
2899 8737 4.034258 GCTCCACACCGACGACGA 62.034 66.667 9.28 0.00 42.66 4.20
2906 8744 1.915614 GACAATGCTGCTCCACACCG 61.916 60.000 0.00 0.00 0.00 4.94
2907 8745 1.878775 GACAATGCTGCTCCACACC 59.121 57.895 0.00 0.00 0.00 4.16
2922 8760 0.735978 CAACAGGCGATGCTACGACA 60.736 55.000 10.99 0.00 44.44 4.35
2925 8763 2.703409 GCAACAGGCGATGCTACG 59.297 61.111 5.19 0.00 37.89 3.51
2973 8811 0.948678 CAGTAGGAGAGGCTACGAGC 59.051 60.000 0.00 0.00 41.46 5.03
2975 8813 3.054875 TGTTACAGTAGGAGAGGCTACGA 60.055 47.826 0.00 0.00 0.00 3.43
2998 8836 2.081212 CACACCGACGACGAAGCTC 61.081 63.158 9.28 0.00 42.66 4.09
2999 8837 2.050351 CACACCGACGACGAAGCT 60.050 61.111 9.28 0.00 42.66 3.74
3014 8852 0.099968 TACGATGACGCTACTGCCAC 59.900 55.000 0.00 0.00 43.96 5.01
3019 8857 1.069838 CGATGCTACGATGACGCTACT 60.070 52.381 0.00 0.00 43.96 2.57
3020 8858 1.319172 CGATGCTACGATGACGCTAC 58.681 55.000 0.00 0.00 43.96 3.58
3021 8859 0.385598 GCGATGCTACGATGACGCTA 60.386 55.000 0.00 0.00 43.96 4.26
3023 8861 2.649257 GGCGATGCTACGATGACGC 61.649 63.158 0.00 0.00 43.96 5.19
3045 8883 1.667830 GCAGTGGAGCTACGTTGCA 60.668 57.895 23.41 0.00 34.99 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.