Multiple sequence alignment - TraesCS7A01G153700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G153700 chr7A 100.000 2525 0 0 1 2525 107148645 107146121 0.000000e+00 4663.0
1 TraesCS7A01G153700 chr7A 96.859 764 22 1 1764 2525 108789957 108790720 0.000000e+00 1277.0
2 TraesCS7A01G153700 chr7A 92.780 277 10 3 1 267 107080068 107079792 2.350000e-105 392.0
3 TraesCS7A01G153700 chr2A 97.251 764 19 1 1764 2525 66876295 66877058 0.000000e+00 1293.0
4 TraesCS7A01G153700 chr2A 97.124 765 19 2 1764 2525 678833934 678834698 0.000000e+00 1288.0
5 TraesCS7A01G153700 chr5A 96.997 766 19 3 1764 2525 426345863 426345098 0.000000e+00 1284.0
6 TraesCS7A01G153700 chr3A 96.993 765 20 2 1764 2525 38157678 38156914 0.000000e+00 1282.0
7 TraesCS7A01G153700 chr3A 96.993 765 19 3 1764 2525 723993445 723992682 0.000000e+00 1282.0
8 TraesCS7A01G153700 chr3A 96.863 765 21 2 1764 2525 5740736 5739972 0.000000e+00 1277.0
9 TraesCS7A01G153700 chrUn 96.863 765 22 1 1763 2525 221175169 221175933 0.000000e+00 1279.0
10 TraesCS7A01G153700 chrUn 88.542 96 6 5 630 723 104889328 104889236 7.380000e-21 111.0
11 TraesCS7A01G153700 chr4A 96.863 765 21 2 1764 2525 519091675 519092439 0.000000e+00 1277.0
12 TraesCS7A01G153700 chr4A 87.143 70 9 0 721 790 1875223 1875292 2.080000e-11 80.5
13 TraesCS7A01G153700 chr7B 91.528 602 40 2 930 1520 60480306 60479705 0.000000e+00 819.0
14 TraesCS7A01G153700 chr7B 90.989 566 45 4 58 620 60481176 60480614 0.000000e+00 758.0
15 TraesCS7A01G153700 chr7B 98.113 53 1 0 1 53 60481265 60481213 2.670000e-15 93.5
16 TraesCS7A01G153700 chr5D 87.755 98 9 3 628 724 439519187 439519282 7.380000e-21 111.0
17 TraesCS7A01G153700 chr4B 89.655 87 6 3 637 722 259929697 259929613 9.550000e-20 108.0
18 TraesCS7A01G153700 chr1A 88.889 90 7 3 637 726 351005548 351005462 9.550000e-20 108.0
19 TraesCS7A01G153700 chr6A 88.043 92 8 3 636 726 555730830 555730741 3.440000e-19 106.0
20 TraesCS7A01G153700 chr2D 88.636 88 7 3 636 722 426864618 426864533 1.240000e-18 104.0
21 TraesCS7A01G153700 chr2D 80.899 89 15 2 739 826 611770368 611770455 4.510000e-08 69.4
22 TraesCS7A01G153700 chr2B 85.714 98 10 4 633 728 193392270 193392175 1.600000e-17 100.0
23 TraesCS7A01G153700 chr4D 87.356 87 8 3 637 722 476207122 476207206 2.070000e-16 97.1
24 TraesCS7A01G153700 chr3D 84.158 101 10 6 629 726 8969930 8970027 2.670000e-15 93.5
25 TraesCS7A01G153700 chr7D 83.158 95 15 1 731 825 71315199 71315106 4.480000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G153700 chr7A 107146121 107148645 2524 True 4663.000000 4663 100.000000 1 2525 1 chr7A.!!$R2 2524
1 TraesCS7A01G153700 chr7A 108789957 108790720 763 False 1277.000000 1277 96.859000 1764 2525 1 chr7A.!!$F1 761
2 TraesCS7A01G153700 chr2A 66876295 66877058 763 False 1293.000000 1293 97.251000 1764 2525 1 chr2A.!!$F1 761
3 TraesCS7A01G153700 chr2A 678833934 678834698 764 False 1288.000000 1288 97.124000 1764 2525 1 chr2A.!!$F2 761
4 TraesCS7A01G153700 chr5A 426345098 426345863 765 True 1284.000000 1284 96.997000 1764 2525 1 chr5A.!!$R1 761
5 TraesCS7A01G153700 chr3A 38156914 38157678 764 True 1282.000000 1282 96.993000 1764 2525 1 chr3A.!!$R2 761
6 TraesCS7A01G153700 chr3A 723992682 723993445 763 True 1282.000000 1282 96.993000 1764 2525 1 chr3A.!!$R3 761
7 TraesCS7A01G153700 chr3A 5739972 5740736 764 True 1277.000000 1277 96.863000 1764 2525 1 chr3A.!!$R1 761
8 TraesCS7A01G153700 chrUn 221175169 221175933 764 False 1279.000000 1279 96.863000 1763 2525 1 chrUn.!!$F1 762
9 TraesCS7A01G153700 chr4A 519091675 519092439 764 False 1277.000000 1277 96.863000 1764 2525 1 chr4A.!!$F2 761
10 TraesCS7A01G153700 chr7B 60479705 60481265 1560 True 556.833333 819 93.543333 1 1520 3 chr7B.!!$R1 1519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 355 0.17576 ACACTCACACAACGTCTGCT 59.824 50.0 0.0 0.0 0.0 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 1917 0.101579 TGTGCAGTCGTCGTCTTCAA 59.898 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 85 5.979517 GCTTATCCCAAACAATAAGTGATGC 59.020 40.000 0.00 0.00 37.64 3.91
98 131 4.264253 CAGTGTCCTTATCTTTCATGCCA 58.736 43.478 0.00 0.00 0.00 4.92
105 138 8.980596 TGTCCTTATCTTTCATGCCATATTTTT 58.019 29.630 0.00 0.00 0.00 1.94
108 141 9.688592 CCTTATCTTTCATGCCATATTTTTCTC 57.311 33.333 0.00 0.00 0.00 2.87
112 145 9.947433 ATCTTTCATGCCATATTTTTCTCAAAA 57.053 25.926 0.00 0.00 36.30 2.44
164 197 9.562408 TGATCCACTATATATCGAGTATCCTTC 57.438 37.037 0.00 0.00 0.00 3.46
216 249 4.878439 TGTCAGAATATGTATACGCCACC 58.122 43.478 0.00 0.00 0.00 4.61
265 298 9.073475 GTCTAATCCAGATTGAGTAGATGTAGT 57.927 37.037 3.10 0.00 42.06 2.73
314 347 3.558006 CCGATTACAACACACTCACACAA 59.442 43.478 0.00 0.00 0.00 3.33
320 353 1.640428 ACACACTCACACAACGTCTG 58.360 50.000 0.00 0.00 0.00 3.51
322 355 0.175760 ACACTCACACAACGTCTGCT 59.824 50.000 0.00 0.00 0.00 4.24
323 356 0.855349 CACTCACACAACGTCTGCTC 59.145 55.000 0.00 0.00 0.00 4.26
328 361 1.933181 CACACAACGTCTGCTCAAGAA 59.067 47.619 0.00 0.00 36.40 2.52
338 371 4.478206 TCTGCTCAAGAATGGGTAGAAG 57.522 45.455 0.00 0.00 44.57 2.85
348 381 2.128771 TGGGTAGAAGATGCAAAGCC 57.871 50.000 0.00 0.00 0.00 4.35
360 393 5.012239 AGATGCAAAGCCTCAAGATTAACA 58.988 37.500 0.00 0.00 0.00 2.41
365 398 5.631096 GCAAAGCCTCAAGATTAACAAAGTC 59.369 40.000 0.00 0.00 0.00 3.01
367 400 5.948992 AGCCTCAAGATTAACAAAGTCAC 57.051 39.130 0.00 0.00 0.00 3.67
368 401 5.376625 AGCCTCAAGATTAACAAAGTCACA 58.623 37.500 0.00 0.00 0.00 3.58
370 403 5.915196 GCCTCAAGATTAACAAAGTCACAAC 59.085 40.000 0.00 0.00 0.00 3.32
372 405 7.479980 CCTCAAGATTAACAAAGTCACAACAA 58.520 34.615 0.00 0.00 0.00 2.83
381 414 5.624292 ACAAAGTCACAACAAACGTCTTAC 58.376 37.500 0.00 0.00 0.00 2.34
390 423 7.758076 TCACAACAAACGTCTTACTATAGATGG 59.242 37.037 6.78 0.00 35.83 3.51
406 439 1.298340 TGGAAACATCGCCGTCCAT 59.702 52.632 0.00 0.00 35.22 3.41
416 449 3.254470 TCGCCGTCCATTCAAAGAATA 57.746 42.857 0.00 0.00 0.00 1.75
435 468 7.602517 AGAATAAGCCGCAATAATGAGATAC 57.397 36.000 0.00 0.00 0.00 2.24
465 498 6.215845 CGTCAAACCTTGAAATTTGATTCCT 58.784 36.000 0.00 0.00 44.36 3.36
466 499 7.367285 CGTCAAACCTTGAAATTTGATTCCTA 58.633 34.615 0.00 0.00 44.36 2.94
467 500 7.326063 CGTCAAACCTTGAAATTTGATTCCTAC 59.674 37.037 0.00 0.00 44.36 3.18
499 532 6.739112 TGACCAAGAGATCTACATGTATTCG 58.261 40.000 5.91 0.00 0.00 3.34
519 552 2.417924 CGTGAGATCCCTCCAACTCAAG 60.418 54.545 0.00 0.00 40.30 3.02
526 559 8.401894 TGAGATCCCTCCAACTCAAGATATATA 58.598 37.037 0.00 0.00 38.66 0.86
527 560 9.432982 GAGATCCCTCCAACTCAAGATATATAT 57.567 37.037 0.00 0.00 33.30 0.86
644 677 8.465273 AATGTGGCTTTAAAATATACTCCCTC 57.535 34.615 0.00 0.00 0.00 4.30
645 678 6.053005 TGTGGCTTTAAAATATACTCCCTCG 58.947 40.000 0.00 0.00 0.00 4.63
646 679 5.469084 GTGGCTTTAAAATATACTCCCTCGG 59.531 44.000 0.00 0.00 0.00 4.63
647 680 5.131475 TGGCTTTAAAATATACTCCCTCGGT 59.869 40.000 0.00 0.00 0.00 4.69
648 681 6.327104 TGGCTTTAAAATATACTCCCTCGGTA 59.673 38.462 0.00 0.00 0.00 4.02
649 682 7.147514 TGGCTTTAAAATATACTCCCTCGGTAA 60.148 37.037 0.00 0.00 0.00 2.85
650 683 7.716560 GGCTTTAAAATATACTCCCTCGGTAAA 59.283 37.037 0.00 0.00 0.00 2.01
651 684 9.112725 GCTTTAAAATATACTCCCTCGGTAAAA 57.887 33.333 0.00 0.00 0.00 1.52
681 714 4.521130 TGAGCGTTCAGATCACTAAAGT 57.479 40.909 0.00 0.00 40.80 2.66
682 715 5.638596 TGAGCGTTCAGATCACTAAAGTA 57.361 39.130 0.00 0.00 40.80 2.24
683 716 5.641709 TGAGCGTTCAGATCACTAAAGTAG 58.358 41.667 0.00 0.00 40.80 2.57
684 717 5.183331 TGAGCGTTCAGATCACTAAAGTAGT 59.817 40.000 0.00 0.00 40.80 2.73
733 766 8.624367 TTACTGAGAGAGTACTATTAGGATGC 57.376 38.462 0.00 0.00 36.86 3.91
806 839 6.882610 TTAGTGAAGCATTGTTCAGAACAT 57.117 33.333 16.89 1.23 41.79 2.71
812 847 7.430502 GTGAAGCATTGTTCAGAACATTATAGC 59.569 37.037 16.89 14.89 41.79 2.97
813 848 7.121020 TGAAGCATTGTTCAGAACATTATAGCA 59.879 33.333 16.89 9.03 41.79 3.49
863 898 1.315257 CCAAAGGGCGGTGGAAGATG 61.315 60.000 0.00 0.00 37.03 2.90
866 901 2.825836 GGGCGGTGGAAGATGCTG 60.826 66.667 0.00 0.00 0.00 4.41
887 922 3.580658 CGAAATTTCGCCGTTCCTC 57.419 52.632 26.01 0.00 44.26 3.71
888 923 0.247145 CGAAATTTCGCCGTTCCTCG 60.247 55.000 26.01 1.00 44.26 4.63
889 924 0.520619 GAAATTTCGCCGTTCCTCGC 60.521 55.000 1.68 0.00 38.35 5.03
890 925 0.953960 AAATTTCGCCGTTCCTCGCT 60.954 50.000 0.00 0.00 38.35 4.93
891 926 1.635663 AATTTCGCCGTTCCTCGCTG 61.636 55.000 0.00 0.00 38.35 5.18
892 927 2.501223 ATTTCGCCGTTCCTCGCTGA 62.501 55.000 0.00 0.00 38.35 4.26
893 928 2.501223 TTTCGCCGTTCCTCGCTGAT 62.501 55.000 0.00 0.00 38.35 2.90
894 929 2.501223 TTCGCCGTTCCTCGCTGATT 62.501 55.000 0.00 0.00 38.35 2.57
895 930 2.517450 CGCCGTTCCTCGCTGATTC 61.517 63.158 0.00 0.00 38.35 2.52
896 931 1.447838 GCCGTTCCTCGCTGATTCA 60.448 57.895 0.00 0.00 38.35 2.57
897 932 1.696832 GCCGTTCCTCGCTGATTCAC 61.697 60.000 0.00 0.00 38.35 3.18
898 933 1.413767 CCGTTCCTCGCTGATTCACG 61.414 60.000 3.29 3.29 38.35 4.35
899 934 1.710339 GTTCCTCGCTGATTCACGC 59.290 57.895 4.46 2.20 0.00 5.34
900 935 1.447838 TTCCTCGCTGATTCACGCC 60.448 57.895 4.46 0.00 0.00 5.68
901 936 3.257561 CCTCGCTGATTCACGCCG 61.258 66.667 4.46 0.00 0.00 6.46
925 961 2.094700 CCTCGCTGTGCCGTATATATGT 60.095 50.000 0.00 0.00 0.00 2.29
955 1116 3.314541 GGTACACCAACCTACAGAGTG 57.685 52.381 0.00 0.00 36.53 3.51
969 1130 8.874744 ACCTACAGAGTGACACTAAATAGTAA 57.125 34.615 8.41 0.00 34.13 2.24
1056 1217 1.674764 CGTCTGCAGGCATCCTCTCT 61.675 60.000 20.11 0.00 0.00 3.10
1138 1299 3.680786 TGGACCTCACCAGCGACG 61.681 66.667 0.00 0.00 34.77 5.12
1207 1371 1.517257 CTCAAGCACCCGAGCTACG 60.517 63.158 0.00 0.00 45.89 3.51
1251 1415 1.883084 GGATTCGCGCGGAGACATT 60.883 57.895 31.69 5.07 0.00 2.71
1256 1420 2.792290 CGCGCGGAGACATTGTCAG 61.792 63.158 24.84 10.33 34.60 3.51
1260 1424 2.456119 CGGAGACATTGTCAGCGCC 61.456 63.158 18.57 12.24 34.60 6.53
1263 1427 4.505217 GACATTGTCAGCGCCGCG 62.505 66.667 8.83 8.83 32.09 6.46
1314 1486 1.207488 TACTGGGCCAGTGCAAGGAT 61.207 55.000 42.10 20.21 45.01 3.24
1347 1519 1.725164 GACTGTCGTCGTGGGATTTTC 59.275 52.381 0.00 0.00 0.00 2.29
1435 1607 9.751542 TCCGAAATTTCTGCAAAATTTTAGTAA 57.248 25.926 22.02 0.00 39.23 2.24
1447 1619 7.537306 GCAAAATTTTAGTAAGCTCGTCATTCA 59.463 33.333 2.44 0.00 0.00 2.57
1475 1647 7.095523 GCATGTATGGCATCCAAATAATTGTTC 60.096 37.037 1.65 0.00 36.95 3.18
1504 1676 5.044558 GCTACTTCTGGTATTGTCTAGCAC 58.955 45.833 0.00 0.00 0.00 4.40
1512 1684 2.680312 ATTGTCTAGCACGCTCATGT 57.320 45.000 0.00 0.00 0.00 3.21
1515 1687 1.405463 TGTCTAGCACGCTCATGTAGG 59.595 52.381 0.00 0.00 0.00 3.18
1520 1692 1.405821 AGCACGCTCATGTAGGAGTAC 59.594 52.381 0.00 0.00 37.24 2.73
1521 1693 1.860399 GCACGCTCATGTAGGAGTACG 60.860 57.143 0.00 0.00 37.24 3.67
1522 1694 1.400846 CACGCTCATGTAGGAGTACGT 59.599 52.381 0.00 0.00 35.13 3.57
1523 1695 2.610833 CACGCTCATGTAGGAGTACGTA 59.389 50.000 0.00 0.00 33.74 3.57
1524 1696 2.871022 ACGCTCATGTAGGAGTACGTAG 59.129 50.000 0.00 0.00 33.74 3.51
1525 1697 3.129109 CGCTCATGTAGGAGTACGTAGA 58.871 50.000 0.00 0.00 37.24 2.59
1526 1698 3.184783 CGCTCATGTAGGAGTACGTAGAG 59.815 52.174 0.00 0.00 37.24 2.43
1527 1699 4.128643 GCTCATGTAGGAGTACGTAGAGT 58.871 47.826 0.00 0.00 37.24 3.24
1528 1700 5.295950 GCTCATGTAGGAGTACGTAGAGTA 58.704 45.833 0.00 0.00 37.24 2.59
1529 1701 5.757320 GCTCATGTAGGAGTACGTAGAGTAA 59.243 44.000 0.00 0.00 37.02 2.24
1530 1702 6.427547 GCTCATGTAGGAGTACGTAGAGTAAT 59.572 42.308 0.00 0.00 37.02 1.89
1531 1703 7.360269 GCTCATGTAGGAGTACGTAGAGTAATC 60.360 44.444 0.00 0.00 46.38 1.75
1532 1704 7.733969 TCATGTAGGAGTACGTAGAGTAATCT 58.266 38.462 0.00 0.00 46.33 2.40
1533 1705 8.209584 TCATGTAGGAGTACGTAGAGTAATCTT 58.790 37.037 0.00 1.63 46.33 2.40
1534 1706 8.838365 CATGTAGGAGTACGTAGAGTAATCTTT 58.162 37.037 0.00 0.00 46.33 2.52
1536 1708 9.890629 TGTAGGAGTACGTAGAGTAATCTTTAA 57.109 33.333 0.00 0.00 46.33 1.52
1539 1711 8.351461 AGGAGTACGTAGAGTAATCTTTAATGC 58.649 37.037 0.00 0.00 46.33 3.56
1540 1712 8.133627 GGAGTACGTAGAGTAATCTTTAATGCA 58.866 37.037 0.00 0.00 46.33 3.96
1541 1713 9.512435 GAGTACGTAGAGTAATCTTTAATGCAA 57.488 33.333 0.00 0.00 44.43 4.08
1542 1714 9.865321 AGTACGTAGAGTAATCTTTAATGCAAA 57.135 29.630 0.00 0.00 37.02 3.68
1545 1717 9.378551 ACGTAGAGTAATCTTTAATGCAAATGA 57.621 29.630 0.00 0.00 0.00 2.57
1549 1721 9.412460 AGAGTAATCTTTAATGCAAATGATCCA 57.588 29.630 0.00 0.00 0.00 3.41
1593 1765 7.600960 TGAGTCTAATCAGATGATGAGTATGC 58.399 38.462 7.01 0.00 42.53 3.14
1594 1766 6.619744 AGTCTAATCAGATGATGAGTATGCG 58.380 40.000 7.01 0.00 42.53 4.73
1595 1767 6.432472 AGTCTAATCAGATGATGAGTATGCGA 59.568 38.462 7.01 0.00 42.53 5.10
1596 1768 7.122501 AGTCTAATCAGATGATGAGTATGCGAT 59.877 37.037 7.01 0.00 42.53 4.58
1597 1769 7.758980 GTCTAATCAGATGATGAGTATGCGATT 59.241 37.037 7.01 0.00 42.53 3.34
1598 1770 8.309656 TCTAATCAGATGATGAGTATGCGATTT 58.690 33.333 7.01 0.00 42.53 2.17
1599 1771 7.741027 AATCAGATGATGAGTATGCGATTTT 57.259 32.000 0.00 0.00 42.53 1.82
1600 1772 7.741027 ATCAGATGATGAGTATGCGATTTTT 57.259 32.000 0.00 0.00 42.53 1.94
1623 1795 5.734855 TTATTCGATTGCACTAAGAAGGC 57.265 39.130 0.00 0.00 0.00 4.35
1624 1796 2.760634 TCGATTGCACTAAGAAGGCA 57.239 45.000 0.00 0.00 35.41 4.75
1625 1797 3.266510 TCGATTGCACTAAGAAGGCAT 57.733 42.857 0.00 0.00 37.39 4.40
1626 1798 4.400529 TCGATTGCACTAAGAAGGCATA 57.599 40.909 0.00 0.00 37.39 3.14
1627 1799 4.960938 TCGATTGCACTAAGAAGGCATAT 58.039 39.130 0.00 0.00 37.39 1.78
1628 1800 4.991056 TCGATTGCACTAAGAAGGCATATC 59.009 41.667 0.00 0.00 37.39 1.63
1629 1801 4.993584 CGATTGCACTAAGAAGGCATATCT 59.006 41.667 0.00 0.00 37.39 1.98
1630 1802 6.015434 TCGATTGCACTAAGAAGGCATATCTA 60.015 38.462 0.00 0.00 37.39 1.98
1631 1803 6.309980 CGATTGCACTAAGAAGGCATATCTAG 59.690 42.308 0.00 0.00 37.39 2.43
1632 1804 6.731292 TTGCACTAAGAAGGCATATCTAGA 57.269 37.500 0.00 0.00 37.39 2.43
1633 1805 6.338214 TGCACTAAGAAGGCATATCTAGAG 57.662 41.667 0.00 0.00 31.58 2.43
1634 1806 5.835819 TGCACTAAGAAGGCATATCTAGAGT 59.164 40.000 0.00 0.00 31.58 3.24
1635 1807 7.004691 TGCACTAAGAAGGCATATCTAGAGTA 58.995 38.462 0.00 0.00 31.58 2.59
1636 1808 7.175816 TGCACTAAGAAGGCATATCTAGAGTAG 59.824 40.741 0.00 0.00 31.58 2.57
1637 1809 7.362574 GCACTAAGAAGGCATATCTAGAGTAGG 60.363 44.444 0.00 0.00 0.00 3.18
1638 1810 7.885922 CACTAAGAAGGCATATCTAGAGTAGGA 59.114 40.741 0.00 0.00 0.00 2.94
1639 1811 8.449625 ACTAAGAAGGCATATCTAGAGTAGGAA 58.550 37.037 0.00 0.00 0.00 3.36
1640 1812 9.303116 CTAAGAAGGCATATCTAGAGTAGGAAA 57.697 37.037 0.00 0.00 0.00 3.13
1641 1813 8.554490 AAGAAGGCATATCTAGAGTAGGAAAA 57.446 34.615 0.00 0.00 0.00 2.29
1642 1814 8.189119 AGAAGGCATATCTAGAGTAGGAAAAG 57.811 38.462 0.00 0.00 0.00 2.27
1643 1815 6.926630 AGGCATATCTAGAGTAGGAAAAGG 57.073 41.667 0.00 0.00 0.00 3.11
1644 1816 6.625267 AGGCATATCTAGAGTAGGAAAAGGA 58.375 40.000 0.00 0.00 0.00 3.36
1645 1817 6.723977 AGGCATATCTAGAGTAGGAAAAGGAG 59.276 42.308 0.00 0.00 0.00 3.69
1646 1818 6.394809 GCATATCTAGAGTAGGAAAAGGAGC 58.605 44.000 0.00 0.00 0.00 4.70
1647 1819 6.573485 GCATATCTAGAGTAGGAAAAGGAGCC 60.573 46.154 0.00 0.00 0.00 4.70
1648 1820 3.644335 TCTAGAGTAGGAAAAGGAGCCC 58.356 50.000 0.00 0.00 0.00 5.19
1649 1821 1.585895 AGAGTAGGAAAAGGAGCCCC 58.414 55.000 0.00 0.00 0.00 5.80
1650 1822 0.178301 GAGTAGGAAAAGGAGCCCCG 59.822 60.000 0.00 0.00 37.58 5.73
1651 1823 1.223763 GTAGGAAAAGGAGCCCCGG 59.776 63.158 0.00 0.00 37.58 5.73
1652 1824 1.229723 TAGGAAAAGGAGCCCCGGT 60.230 57.895 0.00 0.00 37.58 5.28
1653 1825 1.559065 TAGGAAAAGGAGCCCCGGTG 61.559 60.000 0.00 0.00 37.58 4.94
1654 1826 2.434774 GAAAAGGAGCCCCGGTGT 59.565 61.111 0.00 0.00 37.58 4.16
1655 1827 1.681076 GAAAAGGAGCCCCGGTGTA 59.319 57.895 0.00 0.00 37.58 2.90
1656 1828 0.392595 GAAAAGGAGCCCCGGTGTAG 60.393 60.000 0.00 0.00 37.58 2.74
1657 1829 0.838987 AAAAGGAGCCCCGGTGTAGA 60.839 55.000 0.00 0.00 37.58 2.59
1658 1830 1.551019 AAAGGAGCCCCGGTGTAGAC 61.551 60.000 0.00 0.00 37.58 2.59
1659 1831 2.363925 GGAGCCCCGGTGTAGACT 60.364 66.667 0.00 0.00 0.00 3.24
1660 1832 2.424733 GGAGCCCCGGTGTAGACTC 61.425 68.421 0.00 0.00 0.00 3.36
1661 1833 2.363925 AGCCCCGGTGTAGACTCC 60.364 66.667 0.00 0.00 0.00 3.85
1662 1834 2.363925 GCCCCGGTGTAGACTCCT 60.364 66.667 0.00 0.00 0.00 3.69
1663 1835 1.076485 GCCCCGGTGTAGACTCCTA 60.076 63.158 0.00 0.00 0.00 2.94
1664 1836 1.390383 GCCCCGGTGTAGACTCCTAC 61.390 65.000 0.00 0.00 44.26 3.18
1665 1837 0.754587 CCCCGGTGTAGACTCCTACC 60.755 65.000 0.00 0.00 43.56 3.18
1668 1840 3.187955 GGTGTAGACTCCTACCGCT 57.812 57.895 0.00 0.00 43.56 5.52
1669 1841 1.472188 GGTGTAGACTCCTACCGCTT 58.528 55.000 0.00 0.00 43.56 4.68
1670 1842 1.823610 GGTGTAGACTCCTACCGCTTT 59.176 52.381 0.00 0.00 43.56 3.51
1671 1843 2.159268 GGTGTAGACTCCTACCGCTTTC 60.159 54.545 0.00 0.00 43.56 2.62
1672 1844 2.754002 GTGTAGACTCCTACCGCTTTCT 59.246 50.000 0.00 0.00 43.56 2.52
1673 1845 3.193056 GTGTAGACTCCTACCGCTTTCTT 59.807 47.826 0.00 0.00 43.56 2.52
1674 1846 3.442977 TGTAGACTCCTACCGCTTTCTTC 59.557 47.826 0.00 0.00 43.56 2.87
1675 1847 1.473278 AGACTCCTACCGCTTTCTTCG 59.527 52.381 0.00 0.00 0.00 3.79
1682 1854 3.788766 CGCTTTCTTCGGGCGGTG 61.789 66.667 0.00 0.00 44.32 4.94
1683 1855 2.358247 GCTTTCTTCGGGCGGTGA 60.358 61.111 0.00 0.00 0.00 4.02
1684 1856 2.391389 GCTTTCTTCGGGCGGTGAG 61.391 63.158 0.00 0.00 0.00 3.51
1685 1857 1.741770 CTTTCTTCGGGCGGTGAGG 60.742 63.158 0.00 0.00 0.00 3.86
1686 1858 2.450479 CTTTCTTCGGGCGGTGAGGT 62.450 60.000 0.00 0.00 0.00 3.85
1687 1859 2.047213 TTTCTTCGGGCGGTGAGGTT 62.047 55.000 0.00 0.00 0.00 3.50
1688 1860 2.725203 TTCTTCGGGCGGTGAGGTTG 62.725 60.000 0.00 0.00 0.00 3.77
1689 1861 4.323477 TTCGGGCGGTGAGGTTGG 62.323 66.667 0.00 0.00 0.00 3.77
1692 1864 3.728373 GGGCGGTGAGGTTGGGAT 61.728 66.667 0.00 0.00 0.00 3.85
1693 1865 2.355115 GGCGGTGAGGTTGGGATT 59.645 61.111 0.00 0.00 0.00 3.01
1694 1866 1.304134 GGCGGTGAGGTTGGGATTT 60.304 57.895 0.00 0.00 0.00 2.17
1695 1867 1.313091 GGCGGTGAGGTTGGGATTTC 61.313 60.000 0.00 0.00 0.00 2.17
1696 1868 0.322546 GCGGTGAGGTTGGGATTTCT 60.323 55.000 0.00 0.00 0.00 2.52
1697 1869 1.886655 GCGGTGAGGTTGGGATTTCTT 60.887 52.381 0.00 0.00 0.00 2.52
1698 1870 1.812571 CGGTGAGGTTGGGATTTCTTG 59.187 52.381 0.00 0.00 0.00 3.02
1699 1871 2.814097 CGGTGAGGTTGGGATTTCTTGT 60.814 50.000 0.00 0.00 0.00 3.16
1700 1872 2.820197 GGTGAGGTTGGGATTTCTTGTC 59.180 50.000 0.00 0.00 0.00 3.18
1701 1873 3.486383 GTGAGGTTGGGATTTCTTGTCA 58.514 45.455 0.00 0.00 0.00 3.58
1702 1874 4.082125 GTGAGGTTGGGATTTCTTGTCAT 58.918 43.478 0.00 0.00 0.00 3.06
1703 1875 4.081406 TGAGGTTGGGATTTCTTGTCATG 58.919 43.478 0.00 0.00 0.00 3.07
1704 1876 4.082125 GAGGTTGGGATTTCTTGTCATGT 58.918 43.478 0.00 0.00 0.00 3.21
1705 1877 3.828451 AGGTTGGGATTTCTTGTCATGTG 59.172 43.478 0.00 0.00 0.00 3.21
1706 1878 3.056607 GGTTGGGATTTCTTGTCATGTGG 60.057 47.826 0.00 0.00 0.00 4.17
1707 1879 3.805066 TGGGATTTCTTGTCATGTGGA 57.195 42.857 0.00 0.00 0.00 4.02
1708 1880 3.689347 TGGGATTTCTTGTCATGTGGAG 58.311 45.455 0.00 0.00 0.00 3.86
1709 1881 3.330405 TGGGATTTCTTGTCATGTGGAGA 59.670 43.478 0.00 0.00 0.00 3.71
1710 1882 3.944015 GGGATTTCTTGTCATGTGGAGAG 59.056 47.826 0.00 0.00 0.00 3.20
1711 1883 4.323792 GGGATTTCTTGTCATGTGGAGAGA 60.324 45.833 0.00 0.00 0.00 3.10
1712 1884 5.435291 GGATTTCTTGTCATGTGGAGAGAT 58.565 41.667 0.00 0.00 0.00 2.75
1713 1885 5.884792 GGATTTCTTGTCATGTGGAGAGATT 59.115 40.000 0.00 0.00 0.00 2.40
1714 1886 6.376581 GGATTTCTTGTCATGTGGAGAGATTT 59.623 38.462 0.00 0.00 0.00 2.17
1715 1887 7.554118 GGATTTCTTGTCATGTGGAGAGATTTA 59.446 37.037 0.00 0.00 0.00 1.40
1716 1888 8.868522 ATTTCTTGTCATGTGGAGAGATTTAA 57.131 30.769 0.00 0.00 0.00 1.52
1717 1889 8.868522 TTTCTTGTCATGTGGAGAGATTTAAT 57.131 30.769 0.00 0.00 0.00 1.40
1718 1890 7.854557 TCTTGTCATGTGGAGAGATTTAATG 57.145 36.000 0.00 0.00 0.00 1.90
1719 1891 7.397221 TCTTGTCATGTGGAGAGATTTAATGT 58.603 34.615 0.00 0.00 0.00 2.71
1720 1892 7.550551 TCTTGTCATGTGGAGAGATTTAATGTC 59.449 37.037 0.00 0.00 0.00 3.06
1721 1893 6.710278 TGTCATGTGGAGAGATTTAATGTCA 58.290 36.000 4.93 0.00 0.00 3.58
1722 1894 6.820152 TGTCATGTGGAGAGATTTAATGTCAG 59.180 38.462 4.93 0.00 0.00 3.51
1723 1895 7.044181 GTCATGTGGAGAGATTTAATGTCAGA 58.956 38.462 4.93 0.00 0.00 3.27
1724 1896 7.714377 GTCATGTGGAGAGATTTAATGTCAGAT 59.286 37.037 4.93 0.00 0.00 2.90
1725 1897 7.713942 TCATGTGGAGAGATTTAATGTCAGATG 59.286 37.037 4.93 0.27 0.00 2.90
1726 1898 5.819379 TGTGGAGAGATTTAATGTCAGATGC 59.181 40.000 4.93 0.00 0.00 3.91
1727 1899 6.054295 GTGGAGAGATTTAATGTCAGATGCT 58.946 40.000 4.93 0.00 0.00 3.79
1728 1900 6.541641 GTGGAGAGATTTAATGTCAGATGCTT 59.458 38.462 4.93 0.00 0.00 3.91
1729 1901 6.765036 TGGAGAGATTTAATGTCAGATGCTTC 59.235 38.462 4.93 0.00 0.00 3.86
1730 1902 6.765036 GGAGAGATTTAATGTCAGATGCTTCA 59.235 38.462 4.93 0.00 0.00 3.02
1731 1903 7.041916 GGAGAGATTTAATGTCAGATGCTTCAG 60.042 40.741 4.93 0.00 0.00 3.02
1732 1904 6.766944 AGAGATTTAATGTCAGATGCTTCAGG 59.233 38.462 4.93 0.00 0.00 3.86
1733 1905 6.421485 AGATTTAATGTCAGATGCTTCAGGT 58.579 36.000 2.07 0.00 0.00 4.00
1734 1906 6.541641 AGATTTAATGTCAGATGCTTCAGGTC 59.458 38.462 2.07 0.00 0.00 3.85
1735 1907 3.996921 AATGTCAGATGCTTCAGGTCT 57.003 42.857 2.07 0.00 0.00 3.85
1736 1908 6.544928 TTAATGTCAGATGCTTCAGGTCTA 57.455 37.500 2.07 0.00 0.00 2.59
1737 1909 5.627182 AATGTCAGATGCTTCAGGTCTAT 57.373 39.130 2.07 0.00 0.00 1.98
1738 1910 4.397481 TGTCAGATGCTTCAGGTCTATG 57.603 45.455 2.07 0.00 0.00 2.23
1739 1911 3.129871 GTCAGATGCTTCAGGTCTATGC 58.870 50.000 2.07 0.00 0.00 3.14
1740 1912 2.767960 TCAGATGCTTCAGGTCTATGCA 59.232 45.455 2.07 0.00 38.05 3.96
1741 1913 3.198417 TCAGATGCTTCAGGTCTATGCAA 59.802 43.478 2.07 0.00 37.20 4.08
1742 1914 3.560481 CAGATGCTTCAGGTCTATGCAAG 59.440 47.826 2.07 0.00 37.20 4.01
1743 1915 2.408271 TGCTTCAGGTCTATGCAAGG 57.592 50.000 0.00 0.00 0.00 3.61
1744 1916 1.065199 TGCTTCAGGTCTATGCAAGGG 60.065 52.381 0.00 0.00 0.00 3.95
1745 1917 1.065126 GCTTCAGGTCTATGCAAGGGT 60.065 52.381 0.00 0.00 0.00 4.34
1746 1918 2.619074 GCTTCAGGTCTATGCAAGGGTT 60.619 50.000 0.00 0.00 0.00 4.11
1747 1919 2.787473 TCAGGTCTATGCAAGGGTTG 57.213 50.000 0.00 0.00 0.00 3.77
1748 1920 2.265367 TCAGGTCTATGCAAGGGTTGA 58.735 47.619 0.00 0.00 0.00 3.18
1749 1921 2.642311 TCAGGTCTATGCAAGGGTTGAA 59.358 45.455 0.00 0.00 0.00 2.69
1750 1922 3.012518 CAGGTCTATGCAAGGGTTGAAG 58.987 50.000 0.00 0.00 0.00 3.02
1751 1923 2.912956 AGGTCTATGCAAGGGTTGAAGA 59.087 45.455 0.00 0.00 0.00 2.87
1752 1924 3.010420 GGTCTATGCAAGGGTTGAAGAC 58.990 50.000 0.00 0.00 36.53 3.01
1753 1925 2.673368 GTCTATGCAAGGGTTGAAGACG 59.327 50.000 0.00 0.00 31.55 4.18
1754 1926 2.565391 TCTATGCAAGGGTTGAAGACGA 59.435 45.455 0.00 0.00 0.00 4.20
1755 1927 1.523758 ATGCAAGGGTTGAAGACGAC 58.476 50.000 0.00 0.00 0.00 4.34
1756 1928 0.878523 TGCAAGGGTTGAAGACGACG 60.879 55.000 0.00 0.00 0.00 5.12
1757 1929 0.599204 GCAAGGGTTGAAGACGACGA 60.599 55.000 0.00 0.00 0.00 4.20
1758 1930 1.137513 CAAGGGTTGAAGACGACGAC 58.862 55.000 0.00 0.00 0.00 4.34
1759 1931 1.038280 AAGGGTTGAAGACGACGACT 58.962 50.000 0.00 0.00 0.00 4.18
1760 1932 0.314302 AGGGTTGAAGACGACGACTG 59.686 55.000 0.00 0.00 0.00 3.51
1761 1933 1.282930 GGGTTGAAGACGACGACTGC 61.283 60.000 0.00 0.00 0.00 4.40
1796 1968 2.991540 GGCTTTGGTCCAGGCCAC 60.992 66.667 24.45 0.00 43.59 5.01
1865 2037 3.998672 GGTCCCGGTTCGTGAGCA 61.999 66.667 0.00 0.00 32.65 4.26
1945 2117 0.254747 GGTTGGTGGGATGAATCGGA 59.745 55.000 0.00 0.00 0.00 4.55
2035 2207 0.546598 CCCTTTAGTCCCGGCTCATT 59.453 55.000 0.00 0.00 0.00 2.57
2056 2228 0.538516 CACCAACCGGGACCAATGAA 60.539 55.000 6.32 0.00 41.15 2.57
2061 2233 1.303236 CCGGGACCAATGAAGTGCA 60.303 57.895 0.00 0.00 0.00 4.57
2296 2470 3.367743 CGTCCCCGTCTTCACCGA 61.368 66.667 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 85 4.264253 TGGCATGAAAGATAAGGACACTG 58.736 43.478 0.00 0.00 0.00 3.66
216 249 4.696479 AGGACTAATCAGCAACCCATAG 57.304 45.455 0.00 0.00 0.00 2.23
289 322 4.149396 GTGTGAGTGTGTTGTAATCGGTAC 59.851 45.833 0.00 0.00 0.00 3.34
314 347 0.687354 ACCCATTCTTGAGCAGACGT 59.313 50.000 0.00 0.00 0.00 4.34
320 353 3.563390 GCATCTTCTACCCATTCTTGAGC 59.437 47.826 0.00 0.00 0.00 4.26
322 355 4.842531 TGCATCTTCTACCCATTCTTGA 57.157 40.909 0.00 0.00 0.00 3.02
323 356 5.678107 GCTTTGCATCTTCTACCCATTCTTG 60.678 44.000 0.00 0.00 0.00 3.02
328 361 2.243221 AGGCTTTGCATCTTCTACCCAT 59.757 45.455 0.00 0.00 0.00 4.00
338 371 5.314923 TGTTAATCTTGAGGCTTTGCATC 57.685 39.130 0.00 0.00 39.95 3.91
348 381 8.798153 GTTTGTTGTGACTTTGTTAATCTTGAG 58.202 33.333 0.00 0.00 0.00 3.02
360 393 7.781548 ATAGTAAGACGTTTGTTGTGACTTT 57.218 32.000 0.00 0.00 0.00 2.66
365 398 7.758076 TCCATCTATAGTAAGACGTTTGTTGTG 59.242 37.037 0.00 0.00 0.00 3.33
367 400 8.697846 TTCCATCTATAGTAAGACGTTTGTTG 57.302 34.615 0.00 0.00 0.00 3.33
368 401 9.148104 GTTTCCATCTATAGTAAGACGTTTGTT 57.852 33.333 0.00 0.00 0.00 2.83
370 403 8.697846 TGTTTCCATCTATAGTAAGACGTTTG 57.302 34.615 0.00 0.00 0.00 2.93
372 405 7.861372 CGATGTTTCCATCTATAGTAAGACGTT 59.139 37.037 0.00 0.00 44.45 3.99
381 414 3.914312 ACGGCGATGTTTCCATCTATAG 58.086 45.455 16.62 0.00 44.45 1.31
390 423 1.083489 TGAATGGACGGCGATGTTTC 58.917 50.000 16.62 11.75 0.00 2.78
397 430 3.788797 GCTTATTCTTTGAATGGACGGCG 60.789 47.826 4.80 4.80 0.00 6.46
401 434 3.128589 TGCGGCTTATTCTTTGAATGGAC 59.871 43.478 0.00 0.00 0.00 4.02
402 435 3.351740 TGCGGCTTATTCTTTGAATGGA 58.648 40.909 0.00 0.00 0.00 3.41
406 439 7.066887 TCTCATTATTGCGGCTTATTCTTTGAA 59.933 33.333 0.00 0.00 0.00 2.69
416 449 4.085357 TGGTATCTCATTATTGCGGCTT 57.915 40.909 0.00 0.00 0.00 4.35
435 468 2.861462 TTCAAGGTTTGACGCTTTGG 57.139 45.000 0.00 0.00 39.87 3.28
465 498 5.575157 AGATCTCTTGGTCAAGTCTCAGTA 58.425 41.667 10.10 0.00 39.38 2.74
466 499 4.415596 AGATCTCTTGGTCAAGTCTCAGT 58.584 43.478 10.10 0.00 39.38 3.41
467 500 5.417266 TGTAGATCTCTTGGTCAAGTCTCAG 59.583 44.000 0.00 1.67 39.38 3.35
499 532 2.834549 TCTTGAGTTGGAGGGATCTCAC 59.165 50.000 0.00 0.00 41.69 3.51
544 577 7.711846 ACGTCTCTCCAGAATATATATGATGC 58.288 38.462 0.00 0.00 0.00 3.91
618 651 9.569122 GAGGGAGTATATTTTAAAGCCACATTA 57.431 33.333 0.00 0.00 0.00 1.90
619 652 7.228706 CGAGGGAGTATATTTTAAAGCCACATT 59.771 37.037 0.00 0.00 0.00 2.71
620 653 6.710744 CGAGGGAGTATATTTTAAAGCCACAT 59.289 38.462 0.00 0.00 0.00 3.21
621 654 6.053005 CGAGGGAGTATATTTTAAAGCCACA 58.947 40.000 0.00 0.00 0.00 4.17
622 655 5.469084 CCGAGGGAGTATATTTTAAAGCCAC 59.531 44.000 0.00 0.00 0.00 5.01
650 683 9.935241 AGTGATCTGAACGCTCATATATATTTT 57.065 29.630 0.00 0.00 0.00 1.82
655 688 8.580720 ACTTTAGTGATCTGAACGCTCATATAT 58.419 33.333 4.17 0.00 0.00 0.86
656 689 7.941919 ACTTTAGTGATCTGAACGCTCATATA 58.058 34.615 4.17 0.00 0.00 0.86
657 690 6.810911 ACTTTAGTGATCTGAACGCTCATAT 58.189 36.000 4.17 0.00 0.00 1.78
658 691 6.208988 ACTTTAGTGATCTGAACGCTCATA 57.791 37.500 4.17 0.00 0.00 2.15
659 692 5.078411 ACTTTAGTGATCTGAACGCTCAT 57.922 39.130 4.17 0.00 0.00 2.90
660 693 4.521130 ACTTTAGTGATCTGAACGCTCA 57.479 40.909 4.17 0.00 0.00 4.26
661 694 5.642686 ACTACTTTAGTGATCTGAACGCTC 58.357 41.667 4.17 0.00 37.69 5.03
662 695 5.646577 ACTACTTTAGTGATCTGAACGCT 57.353 39.130 6.26 6.26 37.69 5.07
707 740 9.069082 GCATCCTAATAGTACTCTCTCAGTAAA 57.931 37.037 0.00 0.00 39.44 2.01
708 741 8.441572 AGCATCCTAATAGTACTCTCTCAGTAA 58.558 37.037 0.00 0.00 39.44 2.24
709 742 7.980032 AGCATCCTAATAGTACTCTCTCAGTA 58.020 38.462 0.00 0.00 36.43 2.74
710 743 6.848069 AGCATCCTAATAGTACTCTCTCAGT 58.152 40.000 0.00 0.00 39.41 3.41
714 747 9.772973 CGATATAGCATCCTAATAGTACTCTCT 57.227 37.037 0.00 0.00 0.00 3.10
715 748 8.500773 GCGATATAGCATCCTAATAGTACTCTC 58.499 40.741 0.00 0.00 37.05 3.20
716 749 8.215050 AGCGATATAGCATCCTAATAGTACTCT 58.785 37.037 10.60 0.00 40.15 3.24
717 750 8.385898 AGCGATATAGCATCCTAATAGTACTC 57.614 38.462 10.60 0.00 40.15 2.59
718 751 8.215050 AGAGCGATATAGCATCCTAATAGTACT 58.785 37.037 10.60 0.00 40.15 2.73
719 752 8.385898 AGAGCGATATAGCATCCTAATAGTAC 57.614 38.462 10.60 0.00 40.15 2.73
786 819 7.430502 GCTATAATGTTCTGAACAATGCTTCAC 59.569 37.037 25.26 9.07 45.86 3.18
787 820 7.121020 TGCTATAATGTTCTGAACAATGCTTCA 59.879 33.333 25.26 16.28 45.86 3.02
788 821 7.475015 TGCTATAATGTTCTGAACAATGCTTC 58.525 34.615 25.26 14.27 45.86 3.86
826 861 8.637986 GCCCTTTGGTTATGTAATATGATTGAA 58.362 33.333 0.00 0.00 0.00 2.69
827 862 7.040755 CGCCCTTTGGTTATGTAATATGATTGA 60.041 37.037 0.00 0.00 0.00 2.57
829 864 6.208599 CCGCCCTTTGGTTATGTAATATGATT 59.791 38.462 0.00 0.00 0.00 2.57
830 865 5.710099 CCGCCCTTTGGTTATGTAATATGAT 59.290 40.000 0.00 0.00 0.00 2.45
831 866 5.067273 CCGCCCTTTGGTTATGTAATATGA 58.933 41.667 0.00 0.00 0.00 2.15
832 867 4.825085 ACCGCCCTTTGGTTATGTAATATG 59.175 41.667 0.00 0.00 35.82 1.78
833 868 4.825085 CACCGCCCTTTGGTTATGTAATAT 59.175 41.667 0.00 0.00 37.72 1.28
834 869 4.200874 CACCGCCCTTTGGTTATGTAATA 58.799 43.478 0.00 0.00 37.72 0.98
835 870 3.020984 CACCGCCCTTTGGTTATGTAAT 58.979 45.455 0.00 0.00 37.72 1.89
836 871 2.438411 CACCGCCCTTTGGTTATGTAA 58.562 47.619 0.00 0.00 37.72 2.41
837 872 1.340211 CCACCGCCCTTTGGTTATGTA 60.340 52.381 0.00 0.00 37.72 2.29
838 873 0.610785 CCACCGCCCTTTGGTTATGT 60.611 55.000 0.00 0.00 37.72 2.29
839 874 0.322997 TCCACCGCCCTTTGGTTATG 60.323 55.000 0.00 0.00 37.72 1.90
840 875 0.406361 TTCCACCGCCCTTTGGTTAT 59.594 50.000 0.00 0.00 37.72 1.89
847 882 2.044946 GCATCTTCCACCGCCCTT 60.045 61.111 0.00 0.00 0.00 3.95
881 916 1.696832 GGCGTGAATCAGCGAGGAAC 61.697 60.000 8.85 0.00 0.00 3.62
882 917 1.447838 GGCGTGAATCAGCGAGGAA 60.448 57.895 8.85 0.00 0.00 3.36
883 918 2.184322 GGCGTGAATCAGCGAGGA 59.816 61.111 8.85 0.00 0.00 3.71
884 919 3.257561 CGGCGTGAATCAGCGAGG 61.258 66.667 0.00 0.00 0.00 4.63
885 920 2.014093 GAACGGCGTGAATCAGCGAG 62.014 60.000 15.70 5.12 0.00 5.03
886 921 2.048597 AACGGCGTGAATCAGCGA 60.049 55.556 15.70 0.00 0.00 4.93
887 922 2.395690 GAACGGCGTGAATCAGCG 59.604 61.111 15.70 0.00 0.00 5.18
888 923 1.696832 GAGGAACGGCGTGAATCAGC 61.697 60.000 15.70 0.00 0.00 4.26
889 924 1.413767 CGAGGAACGGCGTGAATCAG 61.414 60.000 15.70 0.00 38.46 2.90
890 925 1.445410 CGAGGAACGGCGTGAATCA 60.445 57.895 15.70 0.00 38.46 2.57
891 926 2.799540 GCGAGGAACGGCGTGAATC 61.800 63.158 15.70 7.61 42.83 2.52
892 927 2.813908 GCGAGGAACGGCGTGAAT 60.814 61.111 15.70 1.15 42.83 2.57
893 928 3.986006 AGCGAGGAACGGCGTGAA 61.986 61.111 15.70 0.00 42.83 3.18
894 929 4.717629 CAGCGAGGAACGGCGTGA 62.718 66.667 15.70 0.00 42.83 4.35
900 935 2.884087 ATACGGCACAGCGAGGAACG 62.884 60.000 0.00 0.00 45.66 3.95
901 936 0.101759 TATACGGCACAGCGAGGAAC 59.898 55.000 0.00 0.00 0.00 3.62
955 1116 9.104965 TGGCATGTGTATTTACTATTTAGTGTC 57.895 33.333 0.45 0.00 37.10 3.67
969 1130 6.594788 AATCTTCAGTTTGGCATGTGTATT 57.405 33.333 0.00 0.00 0.00 1.89
1050 1211 1.067706 CGGAGCATGAGCATAGAGAGG 60.068 57.143 0.00 0.00 45.49 3.69
1097 1258 4.717629 CGCCGACTCGCACTGGAA 62.718 66.667 0.00 0.00 0.00 3.53
1152 1313 1.108776 CCATGGAAATGCAGGTGAGG 58.891 55.000 5.56 0.00 0.00 3.86
1228 1392 3.716539 CTCCGCGCGAATCCCTGAA 62.717 63.158 34.63 3.59 0.00 3.02
1263 1427 2.098770 AGGATCGAACTTACCAGCGTAC 59.901 50.000 0.00 0.00 0.00 3.67
1264 1428 2.098607 CAGGATCGAACTTACCAGCGTA 59.901 50.000 0.00 0.00 0.00 4.42
1270 1434 5.449304 CACAAAAACAGGATCGAACTTACC 58.551 41.667 0.00 0.00 0.00 2.85
1314 1486 2.165641 ACGACAGTCGCCATAGAATTCA 59.834 45.455 23.09 0.00 45.12 2.57
1339 1511 6.017934 GGTGCAAGAAAAGAAAAGAAAATCCC 60.018 38.462 0.00 0.00 0.00 3.85
1347 1519 6.147821 TCGATAGAGGTGCAAGAAAAGAAAAG 59.852 38.462 0.00 0.00 42.67 2.27
1435 1607 2.034104 ACATGCATGAATGACGAGCT 57.966 45.000 32.75 3.33 0.00 4.09
1475 1647 6.879400 AGACAATACCAGAAGTAGCCTAAAG 58.121 40.000 0.00 0.00 33.42 1.85
1504 1676 3.129109 TCTACGTACTCCTACATGAGCG 58.871 50.000 0.00 0.00 35.72 5.03
1515 1687 9.512435 TTGCATTAAAGATTACTCTACGTACTC 57.488 33.333 0.00 0.00 0.00 2.59
1523 1695 9.412460 TGGATCATTTGCATTAAAGATTACTCT 57.588 29.630 0.00 0.00 0.00 3.24
1567 1739 8.252417 GCATACTCATCATCTGATTAGACTCAT 58.748 37.037 8.07 0.00 35.34 2.90
1568 1740 7.574592 CGCATACTCATCATCTGATTAGACTCA 60.575 40.741 8.07 0.00 35.34 3.41
1569 1741 6.746822 CGCATACTCATCATCTGATTAGACTC 59.253 42.308 8.07 0.00 35.34 3.36
1570 1742 6.432472 TCGCATACTCATCATCTGATTAGACT 59.568 38.462 8.07 0.00 35.34 3.24
1571 1743 6.616017 TCGCATACTCATCATCTGATTAGAC 58.384 40.000 8.07 0.00 35.34 2.59
1572 1744 6.824305 TCGCATACTCATCATCTGATTAGA 57.176 37.500 8.07 0.00 37.35 2.10
1573 1745 8.476657 AAATCGCATACTCATCATCTGATTAG 57.523 34.615 0.84 0.84 33.26 1.73
1574 1746 8.837788 AAAATCGCATACTCATCATCTGATTA 57.162 30.769 0.00 0.00 32.10 1.75
1575 1747 7.741027 AAAATCGCATACTCATCATCTGATT 57.259 32.000 0.00 0.00 32.10 2.57
1576 1748 7.741027 AAAAATCGCATACTCATCATCTGAT 57.259 32.000 0.00 0.00 32.10 2.90
1598 1770 7.027161 GCCTTCTTAGTGCAATCGAATAAAAA 58.973 34.615 0.00 0.00 0.00 1.94
1599 1771 6.150307 TGCCTTCTTAGTGCAATCGAATAAAA 59.850 34.615 0.00 0.00 30.85 1.52
1600 1772 5.645929 TGCCTTCTTAGTGCAATCGAATAAA 59.354 36.000 0.00 0.00 30.85 1.40
1601 1773 5.182487 TGCCTTCTTAGTGCAATCGAATAA 58.818 37.500 0.00 0.00 30.85 1.40
1602 1774 4.765273 TGCCTTCTTAGTGCAATCGAATA 58.235 39.130 0.00 0.00 30.85 1.75
1603 1775 3.609853 TGCCTTCTTAGTGCAATCGAAT 58.390 40.909 0.00 0.00 30.85 3.34
1604 1776 3.052455 TGCCTTCTTAGTGCAATCGAA 57.948 42.857 0.00 0.00 30.85 3.71
1605 1777 2.760634 TGCCTTCTTAGTGCAATCGA 57.239 45.000 0.00 0.00 30.85 3.59
1606 1778 4.993584 AGATATGCCTTCTTAGTGCAATCG 59.006 41.667 0.00 0.00 38.69 3.34
1607 1779 7.382110 TCTAGATATGCCTTCTTAGTGCAATC 58.618 38.462 0.00 0.00 38.69 2.67
1608 1780 7.016072 ACTCTAGATATGCCTTCTTAGTGCAAT 59.984 37.037 0.00 0.00 38.69 3.56
1609 1781 6.325028 ACTCTAGATATGCCTTCTTAGTGCAA 59.675 38.462 0.00 0.00 38.69 4.08
1610 1782 5.835819 ACTCTAGATATGCCTTCTTAGTGCA 59.164 40.000 0.00 0.00 39.68 4.57
1611 1783 6.339587 ACTCTAGATATGCCTTCTTAGTGC 57.660 41.667 0.00 0.00 0.00 4.40
1612 1784 7.885922 TCCTACTCTAGATATGCCTTCTTAGTG 59.114 40.741 0.00 0.00 0.00 2.74
1613 1785 7.991174 TCCTACTCTAGATATGCCTTCTTAGT 58.009 38.462 0.00 0.00 0.00 2.24
1614 1786 8.871629 TTCCTACTCTAGATATGCCTTCTTAG 57.128 38.462 0.00 0.00 0.00 2.18
1615 1787 9.656323 TTTTCCTACTCTAGATATGCCTTCTTA 57.344 33.333 0.00 0.00 0.00 2.10
1616 1788 8.554490 TTTTCCTACTCTAGATATGCCTTCTT 57.446 34.615 0.00 0.00 0.00 2.52
1617 1789 7.234577 CCTTTTCCTACTCTAGATATGCCTTCT 59.765 40.741 0.00 0.00 0.00 2.85
1618 1790 7.233757 TCCTTTTCCTACTCTAGATATGCCTTC 59.766 40.741 0.00 0.00 0.00 3.46
1619 1791 7.076446 TCCTTTTCCTACTCTAGATATGCCTT 58.924 38.462 0.00 0.00 0.00 4.35
1620 1792 6.625267 TCCTTTTCCTACTCTAGATATGCCT 58.375 40.000 0.00 0.00 0.00 4.75
1621 1793 6.573485 GCTCCTTTTCCTACTCTAGATATGCC 60.573 46.154 0.00 0.00 0.00 4.40
1622 1794 6.394809 GCTCCTTTTCCTACTCTAGATATGC 58.605 44.000 0.00 0.00 0.00 3.14
1623 1795 6.071051 GGGCTCCTTTTCCTACTCTAGATATG 60.071 46.154 0.00 0.00 0.00 1.78
1624 1796 6.020389 GGGCTCCTTTTCCTACTCTAGATAT 58.980 44.000 0.00 0.00 0.00 1.63
1625 1797 5.395611 GGGCTCCTTTTCCTACTCTAGATA 58.604 45.833 0.00 0.00 0.00 1.98
1626 1798 4.228010 GGGCTCCTTTTCCTACTCTAGAT 58.772 47.826 0.00 0.00 0.00 1.98
1627 1799 3.630311 GGGGCTCCTTTTCCTACTCTAGA 60.630 52.174 0.00 0.00 0.00 2.43
1628 1800 2.701423 GGGGCTCCTTTTCCTACTCTAG 59.299 54.545 0.00 0.00 0.00 2.43
1629 1801 2.760581 GGGGCTCCTTTTCCTACTCTA 58.239 52.381 0.00 0.00 0.00 2.43
1630 1802 1.585895 GGGGCTCCTTTTCCTACTCT 58.414 55.000 0.00 0.00 0.00 3.24
1631 1803 0.178301 CGGGGCTCCTTTTCCTACTC 59.822 60.000 0.00 0.00 0.00 2.59
1632 1804 1.272554 CCGGGGCTCCTTTTCCTACT 61.273 60.000 0.00 0.00 0.00 2.57
1633 1805 1.223763 CCGGGGCTCCTTTTCCTAC 59.776 63.158 0.00 0.00 0.00 3.18
1634 1806 1.229723 ACCGGGGCTCCTTTTCCTA 60.230 57.895 6.32 0.00 0.00 2.94
1635 1807 2.531942 ACCGGGGCTCCTTTTCCT 60.532 61.111 6.32 0.00 0.00 3.36
1636 1808 1.844544 TACACCGGGGCTCCTTTTCC 61.845 60.000 1.73 0.00 0.00 3.13
1637 1809 0.392595 CTACACCGGGGCTCCTTTTC 60.393 60.000 1.73 0.00 0.00 2.29
1638 1810 0.838987 TCTACACCGGGGCTCCTTTT 60.839 55.000 1.73 0.00 0.00 2.27
1639 1811 1.229400 TCTACACCGGGGCTCCTTT 60.229 57.895 1.73 0.00 0.00 3.11
1640 1812 1.988406 GTCTACACCGGGGCTCCTT 60.988 63.158 1.73 0.00 0.00 3.36
1641 1813 2.363925 GTCTACACCGGGGCTCCT 60.364 66.667 1.73 0.00 0.00 3.69
1642 1814 2.363925 AGTCTACACCGGGGCTCC 60.364 66.667 1.73 0.00 0.00 4.70
1643 1815 2.424733 GGAGTCTACACCGGGGCTC 61.425 68.421 1.73 1.75 0.00 4.70
1644 1816 1.578215 TAGGAGTCTACACCGGGGCT 61.578 60.000 1.73 0.00 0.00 5.19
1645 1817 1.076485 TAGGAGTCTACACCGGGGC 60.076 63.158 1.73 0.00 0.00 5.80
1646 1818 0.754587 GGTAGGAGTCTACACCGGGG 60.755 65.000 0.00 0.00 45.76 5.73
1647 1819 1.099879 CGGTAGGAGTCTACACCGGG 61.100 65.000 6.32 0.00 45.76 5.73
1648 1820 1.722636 GCGGTAGGAGTCTACACCGG 61.723 65.000 22.97 0.00 45.76 5.28
1649 1821 0.747283 AGCGGTAGGAGTCTACACCG 60.747 60.000 19.70 19.70 45.76 4.94
1650 1822 1.472188 AAGCGGTAGGAGTCTACACC 58.528 55.000 5.99 0.00 45.76 4.16
1651 1823 2.754002 AGAAAGCGGTAGGAGTCTACAC 59.246 50.000 5.99 0.00 45.76 2.90
1652 1824 3.083122 AGAAAGCGGTAGGAGTCTACA 57.917 47.619 5.99 0.00 45.76 2.74
1653 1825 3.487209 CGAAGAAAGCGGTAGGAGTCTAC 60.487 52.174 0.00 0.00 43.82 2.59
1654 1826 2.681848 CGAAGAAAGCGGTAGGAGTCTA 59.318 50.000 0.00 0.00 0.00 2.59
1655 1827 1.473278 CGAAGAAAGCGGTAGGAGTCT 59.527 52.381 0.00 0.00 0.00 3.24
1656 1828 1.469423 CCGAAGAAAGCGGTAGGAGTC 60.469 57.143 0.00 0.00 43.66 3.36
1657 1829 0.531200 CCGAAGAAAGCGGTAGGAGT 59.469 55.000 0.00 0.00 43.66 3.85
1658 1830 3.347411 CCGAAGAAAGCGGTAGGAG 57.653 57.895 0.00 0.00 43.66 3.69
1666 1838 2.358247 TCACCGCCCGAAGAAAGC 60.358 61.111 0.00 0.00 0.00 3.51
1667 1839 1.741770 CCTCACCGCCCGAAGAAAG 60.742 63.158 0.00 0.00 0.00 2.62
1668 1840 2.047213 AACCTCACCGCCCGAAGAAA 62.047 55.000 0.00 0.00 0.00 2.52
1669 1841 2.513259 AACCTCACCGCCCGAAGAA 61.513 57.895 0.00 0.00 0.00 2.52
1670 1842 2.920912 AACCTCACCGCCCGAAGA 60.921 61.111 0.00 0.00 0.00 2.87
1671 1843 2.742372 CAACCTCACCGCCCGAAG 60.742 66.667 0.00 0.00 0.00 3.79
1672 1844 4.323477 CCAACCTCACCGCCCGAA 62.323 66.667 0.00 0.00 0.00 4.30
1675 1847 2.781431 AAATCCCAACCTCACCGCCC 62.781 60.000 0.00 0.00 0.00 6.13
1676 1848 1.304134 AAATCCCAACCTCACCGCC 60.304 57.895 0.00 0.00 0.00 6.13
1677 1849 0.322546 AGAAATCCCAACCTCACCGC 60.323 55.000 0.00 0.00 0.00 5.68
1678 1850 1.812571 CAAGAAATCCCAACCTCACCG 59.187 52.381 0.00 0.00 0.00 4.94
1679 1851 2.820197 GACAAGAAATCCCAACCTCACC 59.180 50.000 0.00 0.00 0.00 4.02
1680 1852 3.486383 TGACAAGAAATCCCAACCTCAC 58.514 45.455 0.00 0.00 0.00 3.51
1681 1853 3.874383 TGACAAGAAATCCCAACCTCA 57.126 42.857 0.00 0.00 0.00 3.86
1682 1854 4.082125 ACATGACAAGAAATCCCAACCTC 58.918 43.478 0.00 0.00 0.00 3.85
1683 1855 3.828451 CACATGACAAGAAATCCCAACCT 59.172 43.478 0.00 0.00 0.00 3.50
1684 1856 3.056607 CCACATGACAAGAAATCCCAACC 60.057 47.826 0.00 0.00 0.00 3.77
1685 1857 3.826157 TCCACATGACAAGAAATCCCAAC 59.174 43.478 0.00 0.00 0.00 3.77
1686 1858 4.081406 CTCCACATGACAAGAAATCCCAA 58.919 43.478 0.00 0.00 0.00 4.12
1687 1859 3.330405 TCTCCACATGACAAGAAATCCCA 59.670 43.478 0.00 0.00 0.00 4.37
1688 1860 3.944015 CTCTCCACATGACAAGAAATCCC 59.056 47.826 0.00 0.00 0.00 3.85
1689 1861 4.836825 TCTCTCCACATGACAAGAAATCC 58.163 43.478 0.00 0.00 0.00 3.01
1690 1862 6.998968 AATCTCTCCACATGACAAGAAATC 57.001 37.500 0.00 0.00 0.00 2.17
1691 1863 8.868522 TTAAATCTCTCCACATGACAAGAAAT 57.131 30.769 0.00 0.00 0.00 2.17
1692 1864 8.733458 CATTAAATCTCTCCACATGACAAGAAA 58.267 33.333 0.00 0.00 0.00 2.52
1693 1865 7.884877 ACATTAAATCTCTCCACATGACAAGAA 59.115 33.333 0.00 0.00 0.00 2.52
1694 1866 7.397221 ACATTAAATCTCTCCACATGACAAGA 58.603 34.615 0.00 0.00 0.00 3.02
1695 1867 7.335171 TGACATTAAATCTCTCCACATGACAAG 59.665 37.037 0.00 0.00 0.00 3.16
1696 1868 7.167535 TGACATTAAATCTCTCCACATGACAA 58.832 34.615 0.00 0.00 0.00 3.18
1697 1869 6.710278 TGACATTAAATCTCTCCACATGACA 58.290 36.000 0.00 0.00 0.00 3.58
1698 1870 7.044181 TCTGACATTAAATCTCTCCACATGAC 58.956 38.462 0.00 0.00 0.00 3.06
1699 1871 7.186570 TCTGACATTAAATCTCTCCACATGA 57.813 36.000 0.00 0.00 0.00 3.07
1700 1872 7.520131 GCATCTGACATTAAATCTCTCCACATG 60.520 40.741 0.00 0.00 0.00 3.21
1701 1873 6.485984 GCATCTGACATTAAATCTCTCCACAT 59.514 38.462 0.00 0.00 0.00 3.21
1702 1874 5.819379 GCATCTGACATTAAATCTCTCCACA 59.181 40.000 0.00 0.00 0.00 4.17
1703 1875 6.054295 AGCATCTGACATTAAATCTCTCCAC 58.946 40.000 0.00 0.00 0.00 4.02
1704 1876 6.244552 AGCATCTGACATTAAATCTCTCCA 57.755 37.500 0.00 0.00 0.00 3.86
1705 1877 6.765036 TGAAGCATCTGACATTAAATCTCTCC 59.235 38.462 0.00 0.00 0.00 3.71
1706 1878 7.041916 CCTGAAGCATCTGACATTAAATCTCTC 60.042 40.741 0.00 0.00 0.00 3.20
1707 1879 6.766944 CCTGAAGCATCTGACATTAAATCTCT 59.233 38.462 0.00 0.00 0.00 3.10
1708 1880 6.541641 ACCTGAAGCATCTGACATTAAATCTC 59.458 38.462 0.00 0.00 0.00 2.75
1709 1881 6.421485 ACCTGAAGCATCTGACATTAAATCT 58.579 36.000 0.00 0.00 0.00 2.40
1710 1882 6.541641 AGACCTGAAGCATCTGACATTAAATC 59.458 38.462 0.00 0.00 0.00 2.17
1711 1883 6.421485 AGACCTGAAGCATCTGACATTAAAT 58.579 36.000 0.00 0.00 0.00 1.40
1712 1884 5.809001 AGACCTGAAGCATCTGACATTAAA 58.191 37.500 0.00 0.00 0.00 1.52
1713 1885 5.426689 AGACCTGAAGCATCTGACATTAA 57.573 39.130 0.00 0.00 0.00 1.40
1714 1886 6.519382 CATAGACCTGAAGCATCTGACATTA 58.481 40.000 0.00 0.00 0.00 1.90
1715 1887 3.996921 AGACCTGAAGCATCTGACATT 57.003 42.857 0.00 0.00 0.00 2.71
1716 1888 4.743045 GCATAGACCTGAAGCATCTGACAT 60.743 45.833 0.00 0.00 0.00 3.06
1717 1889 3.431346 GCATAGACCTGAAGCATCTGACA 60.431 47.826 0.00 0.00 0.00 3.58
1718 1890 3.129871 GCATAGACCTGAAGCATCTGAC 58.870 50.000 0.00 0.00 0.00 3.51
1719 1891 2.767960 TGCATAGACCTGAAGCATCTGA 59.232 45.455 0.00 0.00 0.00 3.27
1720 1892 3.189618 TGCATAGACCTGAAGCATCTG 57.810 47.619 0.00 0.00 0.00 2.90
1721 1893 3.433314 CCTTGCATAGACCTGAAGCATCT 60.433 47.826 0.00 0.00 34.87 2.90
1722 1894 2.877168 CCTTGCATAGACCTGAAGCATC 59.123 50.000 0.00 0.00 34.87 3.91
1723 1895 2.422519 CCCTTGCATAGACCTGAAGCAT 60.423 50.000 0.00 0.00 34.87 3.79
1724 1896 1.065199 CCCTTGCATAGACCTGAAGCA 60.065 52.381 0.00 0.00 0.00 3.91
1725 1897 1.065126 ACCCTTGCATAGACCTGAAGC 60.065 52.381 0.00 0.00 0.00 3.86
1726 1898 3.012518 CAACCCTTGCATAGACCTGAAG 58.987 50.000 0.00 0.00 0.00 3.02
1727 1899 2.642311 TCAACCCTTGCATAGACCTGAA 59.358 45.455 0.00 0.00 0.00 3.02
1728 1900 2.265367 TCAACCCTTGCATAGACCTGA 58.735 47.619 0.00 0.00 0.00 3.86
1729 1901 2.787473 TCAACCCTTGCATAGACCTG 57.213 50.000 0.00 0.00 0.00 4.00
1730 1902 2.912956 TCTTCAACCCTTGCATAGACCT 59.087 45.455 0.00 0.00 0.00 3.85
1731 1903 3.010420 GTCTTCAACCCTTGCATAGACC 58.990 50.000 0.00 0.00 32.31 3.85
1732 1904 2.673368 CGTCTTCAACCCTTGCATAGAC 59.327 50.000 0.00 0.00 33.72 2.59
1733 1905 2.565391 TCGTCTTCAACCCTTGCATAGA 59.435 45.455 0.00 0.00 0.00 1.98
1734 1906 2.673368 GTCGTCTTCAACCCTTGCATAG 59.327 50.000 0.00 0.00 0.00 2.23
1735 1907 2.695359 GTCGTCTTCAACCCTTGCATA 58.305 47.619 0.00 0.00 0.00 3.14
1736 1908 1.523758 GTCGTCTTCAACCCTTGCAT 58.476 50.000 0.00 0.00 0.00 3.96
1737 1909 0.878523 CGTCGTCTTCAACCCTTGCA 60.879 55.000 0.00 0.00 0.00 4.08
1738 1910 0.599204 TCGTCGTCTTCAACCCTTGC 60.599 55.000 0.00 0.00 0.00 4.01
1739 1911 1.137513 GTCGTCGTCTTCAACCCTTG 58.862 55.000 0.00 0.00 0.00 3.61
1740 1912 1.038280 AGTCGTCGTCTTCAACCCTT 58.962 50.000 0.00 0.00 0.00 3.95
1741 1913 0.314302 CAGTCGTCGTCTTCAACCCT 59.686 55.000 0.00 0.00 0.00 4.34
1742 1914 1.282930 GCAGTCGTCGTCTTCAACCC 61.283 60.000 0.00 0.00 0.00 4.11
1743 1915 0.596600 TGCAGTCGTCGTCTTCAACC 60.597 55.000 0.00 0.00 0.00 3.77
1744 1916 0.503117 GTGCAGTCGTCGTCTTCAAC 59.497 55.000 0.00 0.00 0.00 3.18
1745 1917 0.101579 TGTGCAGTCGTCGTCTTCAA 59.898 50.000 0.00 0.00 0.00 2.69
1746 1918 0.594028 GTGTGCAGTCGTCGTCTTCA 60.594 55.000 0.00 0.00 0.00 3.02
1747 1919 0.317938 AGTGTGCAGTCGTCGTCTTC 60.318 55.000 0.00 0.00 0.00 2.87
1748 1920 0.949397 TAGTGTGCAGTCGTCGTCTT 59.051 50.000 0.00 0.00 0.00 3.01
1749 1921 0.517755 CTAGTGTGCAGTCGTCGTCT 59.482 55.000 0.00 0.00 0.00 4.18
1750 1922 0.237761 ACTAGTGTGCAGTCGTCGTC 59.762 55.000 0.00 0.00 0.00 4.20
1751 1923 1.463831 CTACTAGTGTGCAGTCGTCGT 59.536 52.381 5.39 0.00 0.00 4.34
1752 1924 1.730612 TCTACTAGTGTGCAGTCGTCG 59.269 52.381 5.39 0.00 0.00 5.12
1753 1925 3.826236 TTCTACTAGTGTGCAGTCGTC 57.174 47.619 5.39 0.00 0.00 4.20
1754 1926 4.202080 TGTTTTCTACTAGTGTGCAGTCGT 60.202 41.667 5.39 0.00 0.00 4.34
1755 1927 4.295870 TGTTTTCTACTAGTGTGCAGTCG 58.704 43.478 5.39 0.00 0.00 4.18
1756 1928 4.686554 CCTGTTTTCTACTAGTGTGCAGTC 59.313 45.833 5.39 0.00 0.00 3.51
1757 1929 4.503296 CCCTGTTTTCTACTAGTGTGCAGT 60.503 45.833 5.39 0.00 0.00 4.40
1758 1930 3.997021 CCCTGTTTTCTACTAGTGTGCAG 59.003 47.826 5.39 5.38 0.00 4.41
1759 1931 3.805807 GCCCTGTTTTCTACTAGTGTGCA 60.806 47.826 5.39 0.00 0.00 4.57
1760 1932 2.742589 GCCCTGTTTTCTACTAGTGTGC 59.257 50.000 5.39 0.00 0.00 4.57
1761 1933 4.273148 AGCCCTGTTTTCTACTAGTGTG 57.727 45.455 5.39 0.00 0.00 3.82
1796 1968 1.227263 CGGGACTAATGGGCTGACG 60.227 63.158 0.00 0.00 0.00 4.35
1945 2117 2.044946 GAGCGAGGCCCATTGGTT 60.045 61.111 0.00 0.00 0.00 3.67
2035 2207 2.157452 ATTGGTCCCGGTTGGTGGA 61.157 57.895 0.00 0.00 34.77 4.02
2056 2228 4.547671 AGCGAGGGGTATATATATGCACT 58.452 43.478 12.16 9.31 0.00 4.40
2061 2233 2.812591 CGCGAGCGAGGGGTATATATAT 59.187 50.000 12.58 0.00 42.83 0.86
2090 2262 4.103311 AGAGAAAAACAGAGCACTAGGGTT 59.897 41.667 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.