Multiple sequence alignment - TraesCS7A01G152100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G152100 chr7A 100.000 4132 0 0 1 4132 105510739 105514870 0.000000e+00 7631
1 TraesCS7A01G152100 chr7A 100.000 377 0 0 1465 1841 105512015 105512391 0.000000e+00 697
2 TraesCS7A01G152100 chr7A 100.000 377 0 0 1277 1653 105512203 105512579 0.000000e+00 697
3 TraesCS7A01G152100 chr7A 81.045 823 138 7 1 805 105502224 105503046 1.250000e-179 640
4 TraesCS7A01G152100 chr7A 84.009 469 59 13 2810 3263 105504919 105505386 1.760000e-118 436
5 TraesCS7A01G152100 chr7A 100.000 189 0 0 1653 1841 105512015 105512203 2.360000e-92 350
6 TraesCS7A01G152100 chr7A 100.000 189 0 0 1277 1465 105512391 105512579 2.360000e-92 350
7 TraesCS7A01G152100 chr7D 95.408 1764 70 9 1653 3407 101738326 101740087 0.000000e+00 2798
8 TraesCS7A01G152100 chr7D 93.092 1491 76 5 1 1468 101737031 101738517 0.000000e+00 2158
9 TraesCS7A01G152100 chr7D 82.320 1595 203 40 1711 3263 101732687 101734244 0.000000e+00 1310
10 TraesCS7A01G152100 chr7D 92.996 257 12 5 3405 3658 155292309 155292562 1.810000e-98 370
11 TraesCS7A01G152100 chr7D 92.742 248 14 3 3404 3650 218087595 218087351 5.080000e-94 355
12 TraesCS7A01G152100 chr7D 97.396 192 5 0 1465 1656 101738326 101738517 1.110000e-85 327
13 TraesCS7A01G152100 chr7D 91.282 195 12 3 3218 3407 101740702 101740896 1.140000e-65 261
14 TraesCS7A01G152100 chr7D 89.683 126 11 2 4007 4132 220635486 220635609 4.280000e-35 159
15 TraesCS7A01G152100 chr7D 88.889 81 8 1 4053 4132 220635895 220635975 9.450000e-17 99
16 TraesCS7A01G152100 chr7B 94.422 1470 72 5 1 1468 59071292 59072753 0.000000e+00 2252
17 TraesCS7A01G152100 chr7B 95.560 1374 49 5 1653 3023 59072566 59073930 0.000000e+00 2189
18 TraesCS7A01G152100 chr7B 86.735 490 46 11 3653 4132 59074272 59074752 1.020000e-145 527
19 TraesCS7A01G152100 chr7B 83.864 471 57 12 2810 3263 59067447 59067915 8.210000e-117 431
20 TraesCS7A01G152100 chr7B 96.354 192 3 1 1465 1656 59072566 59072753 3.100000e-81 313
21 TraesCS7A01G152100 chr5B 78.001 1441 276 33 1711 3130 531816979 531818399 0.000000e+00 867
22 TraesCS7A01G152100 chr5B 77.651 1405 253 41 1774 3134 533035342 533033955 0.000000e+00 798
23 TraesCS7A01G152100 chr5B 74.749 1196 256 37 1959 3135 533088870 533087702 1.030000e-135 494
24 TraesCS7A01G152100 chr5D 77.392 1411 251 45 1774 3140 438438712 438437326 0.000000e+00 776
25 TraesCS7A01G152100 chr5D 91.321 265 17 6 3394 3654 301730797 301731059 1.410000e-94 357
26 TraesCS7A01G152100 chr5D 76.852 324 68 5 2817 3135 438060469 438060790 4.250000e-40 176
27 TraesCS7A01G152100 chr5D 87.179 117 12 2 4017 4132 524330352 524330238 3.350000e-26 130
28 TraesCS7A01G152100 chr2A 76.017 1401 282 44 1767 3135 14730453 14729075 0.000000e+00 676
29 TraesCS7A01G152100 chr2A 75.302 1405 283 47 1768 3135 14740577 14739200 7.590000e-172 614
30 TraesCS7A01G152100 chr2A 78.064 971 177 27 1768 2715 14703616 14702659 7.700000e-162 580
31 TraesCS7A01G152100 chr2A 75.534 421 87 11 394 803 52765514 52765099 4.220000e-45 193
32 TraesCS7A01G152100 chr2A 85.950 121 13 3 4012 4132 423142464 423142348 4.340000e-25 126
33 TraesCS7A01G152100 chr2B 75.695 1403 281 44 1768 3135 20146561 20147938 0.000000e+00 647
34 TraesCS7A01G152100 chr2D 78.008 964 170 27 1776 2714 12632441 12631495 5.990000e-158 568
35 TraesCS7A01G152100 chr2D 90.037 271 19 6 3393 3658 106811787 106811520 1.100000e-90 344
36 TraesCS7A01G152100 chr2D 90.037 271 19 6 3393 3658 106814906 106814639 1.100000e-90 344
37 TraesCS7A01G152100 chr5A 75.000 1164 232 40 1996 3128 554060133 554058998 2.230000e-132 483
38 TraesCS7A01G152100 chr6D 93.443 244 12 3 3409 3650 376768781 376769022 3.930000e-95 359
39 TraesCS7A01G152100 chr6D 94.167 120 6 1 4013 4132 324558185 324558303 9.120000e-42 182
40 TraesCS7A01G152100 chr6B 90.842 273 17 7 3402 3669 374208266 374207997 3.930000e-95 359
41 TraesCS7A01G152100 chr3D 92.430 251 14 4 3402 3650 61595151 61595398 1.830000e-93 353
42 TraesCS7A01G152100 chr3A 90.706 269 19 5 3394 3658 411186335 411186601 1.830000e-93 353
43 TraesCS7A01G152100 chrUn 86.555 119 14 2 4013 4130 83085256 83085373 3.350000e-26 130
44 TraesCS7A01G152100 chr3B 84.615 130 16 3 4004 4132 425728478 425728604 4.340000e-25 126
45 TraesCS7A01G152100 chr4D 82.946 129 18 2 4000 4128 309847727 309847851 3.380000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G152100 chr7A 105510739 105514870 4131 False 1945.0 7631 100.0000 1 4132 5 chr7A.!!$F2 4131
1 TraesCS7A01G152100 chr7A 105502224 105505386 3162 False 538.0 640 82.5270 1 3263 2 chr7A.!!$F1 3262
2 TraesCS7A01G152100 chr7D 101732687 101740896 8209 False 1370.8 2798 91.8996 1 3407 5 chr7D.!!$F2 3406
3 TraesCS7A01G152100 chr7B 59067447 59074752 7305 False 1142.4 2252 91.3870 1 4132 5 chr7B.!!$F1 4131
4 TraesCS7A01G152100 chr5B 531816979 531818399 1420 False 867.0 867 78.0010 1711 3130 1 chr5B.!!$F1 1419
5 TraesCS7A01G152100 chr5B 533033955 533035342 1387 True 798.0 798 77.6510 1774 3134 1 chr5B.!!$R1 1360
6 TraesCS7A01G152100 chr5B 533087702 533088870 1168 True 494.0 494 74.7490 1959 3135 1 chr5B.!!$R2 1176
7 TraesCS7A01G152100 chr5D 438437326 438438712 1386 True 776.0 776 77.3920 1774 3140 1 chr5D.!!$R1 1366
8 TraesCS7A01G152100 chr2A 14729075 14730453 1378 True 676.0 676 76.0170 1767 3135 1 chr2A.!!$R2 1368
9 TraesCS7A01G152100 chr2A 14739200 14740577 1377 True 614.0 614 75.3020 1768 3135 1 chr2A.!!$R3 1367
10 TraesCS7A01G152100 chr2A 14702659 14703616 957 True 580.0 580 78.0640 1768 2715 1 chr2A.!!$R1 947
11 TraesCS7A01G152100 chr2B 20146561 20147938 1377 False 647.0 647 75.6950 1768 3135 1 chr2B.!!$F1 1367
12 TraesCS7A01G152100 chr2D 12631495 12632441 946 True 568.0 568 78.0080 1776 2714 1 chr2D.!!$R1 938
13 TraesCS7A01G152100 chr2D 106811520 106814906 3386 True 344.0 344 90.0370 3393 3658 2 chr2D.!!$R2 265
14 TraesCS7A01G152100 chr5A 554058998 554060133 1135 True 483.0 483 75.0000 1996 3128 1 chr5A.!!$R1 1132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 4827 0.250467 GGACAAGAAGGAGCACTGCA 60.25 55.0 3.3 0.0 0.0 4.41 F
1542 5717 0.110486 GAAGGCAAGAACAGGACCCA 59.89 55.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 6016 2.045926 CAAAGCCTCCCCGTCCAG 60.046 66.667 0.00 0.00 0.00 3.86 R
3277 13248 1.146957 TTTTCACCACCACGACGACG 61.147 55.000 5.58 5.58 45.75 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 3905 4.779733 GGCTCCGGAGACCCCTCA 62.780 72.222 35.69 0.00 41.20 3.86
186 4033 6.352222 CCAGGTCAAGAATGAGTACCAATACT 60.352 42.308 0.00 0.00 44.74 2.12
218 4065 3.054875 ACACCAGCGCCATCATGATATAT 60.055 43.478 8.15 0.00 0.00 0.86
221 4068 4.056740 CCAGCGCCATCATGATATATCTC 58.943 47.826 8.15 0.00 0.00 2.75
508 4373 1.124780 TTCTCAAAGGGGTGTCGACA 58.875 50.000 15.76 15.76 0.00 4.35
581 4446 1.011333 CACCGGACAAGTTCGTGTTT 58.989 50.000 9.46 0.00 0.00 2.83
605 4470 1.202604 GGAGACACGTTGTTGGAGGAA 60.203 52.381 0.00 0.00 0.00 3.36
871 4737 5.588246 TGTTTTAGATTGACAAGACACAGCA 59.412 36.000 0.00 0.00 0.00 4.41
897 4763 1.523938 GGGACGACCTTGGCTATGC 60.524 63.158 3.44 0.00 35.85 3.14
908 4774 6.649141 CGACCTTGGCTATGCATAATACTTTA 59.351 38.462 8.00 0.00 0.00 1.85
941 4814 3.549299 CTGCACAGCTAAAAGGACAAG 57.451 47.619 0.00 0.00 0.00 3.16
954 4827 0.250467 GGACAAGAAGGAGCACTGCA 60.250 55.000 3.30 0.00 0.00 4.41
1000 4873 5.194473 AGGAAGTAGTGTCCTGATACTCA 57.806 43.478 0.00 0.00 44.14 3.41
1045 4918 4.023536 TGAAATCCAAAGGTGCGTTTAGTC 60.024 41.667 0.00 0.00 0.00 2.59
1053 4943 3.858247 AGGTGCGTTTAGTCTACATTCC 58.142 45.455 0.00 0.00 0.00 3.01
1058 4948 5.865552 GTGCGTTTAGTCTACATTCCTTACA 59.134 40.000 0.00 0.00 0.00 2.41
1100 4990 7.792736 AGTTTCTGTATCTATTGTACCCCCATA 59.207 37.037 0.00 0.00 0.00 2.74
1104 4994 5.544948 TGTATCTATTGTACCCCCATACCAC 59.455 44.000 0.00 0.00 0.00 4.16
1119 5009 6.264518 CCCCATACCACGAAAGCTTTATAAAT 59.735 38.462 12.68 0.87 0.00 1.40
1122 5012 5.830000 ACCACGAAAGCTTTATAAATCCC 57.170 39.130 12.68 0.00 0.00 3.85
1146 5076 0.750850 AGATGCAAATCCATGCTGGC 59.249 50.000 0.00 0.00 46.54 4.85
1229 5223 1.298859 CTGCGCTGGTTGGGTTCTAC 61.299 60.000 9.73 0.00 0.00 2.59
1236 5230 2.233922 CTGGTTGGGTTCTACGAGTGAT 59.766 50.000 0.00 0.00 0.00 3.06
1357 5532 1.303643 GCAAGAACAGGACCCAGGG 60.304 63.158 2.85 2.85 0.00 4.45
1359 5534 0.771127 CAAGAACAGGACCCAGGGAA 59.229 55.000 14.54 0.00 0.00 3.97
1360 5535 1.144913 CAAGAACAGGACCCAGGGAAA 59.855 52.381 14.54 0.00 0.00 3.13
1385 5560 0.536006 AGAAGGCGCTATTGGATGGC 60.536 55.000 7.64 0.00 0.00 4.40
1411 5586 6.923199 AAGTGATCTTGAATTCCCATTTGT 57.077 33.333 2.27 0.00 32.09 2.83
1413 5588 8.421249 AAGTGATCTTGAATTCCCATTTGTAA 57.579 30.769 2.27 0.00 32.09 2.41
1414 5589 8.059798 AGTGATCTTGAATTCCCATTTGTAAG 57.940 34.615 2.27 0.00 0.00 2.34
1415 5590 7.890127 AGTGATCTTGAATTCCCATTTGTAAGA 59.110 33.333 2.27 3.22 0.00 2.10
1416 5591 8.689972 GTGATCTTGAATTCCCATTTGTAAGAT 58.310 33.333 11.20 11.20 34.22 2.40
1417 5592 9.258629 TGATCTTGAATTCCCATTTGTAAGATT 57.741 29.630 12.17 1.34 33.04 2.40
1419 5594 9.880157 ATCTTGAATTCCCATTTGTAAGATTTG 57.120 29.630 2.27 0.00 31.03 2.32
1420 5595 9.087871 TCTTGAATTCCCATTTGTAAGATTTGA 57.912 29.630 2.27 0.00 0.00 2.69
1421 5596 9.362539 CTTGAATTCCCATTTGTAAGATTTGAG 57.637 33.333 2.27 0.00 0.00 3.02
1422 5597 7.839907 TGAATTCCCATTTGTAAGATTTGAGG 58.160 34.615 2.27 0.00 0.00 3.86
1423 5598 7.673504 TGAATTCCCATTTGTAAGATTTGAGGA 59.326 33.333 2.27 0.00 0.00 3.71
1424 5599 7.651027 ATTCCCATTTGTAAGATTTGAGGAG 57.349 36.000 0.00 0.00 0.00 3.69
1425 5600 6.387192 TCCCATTTGTAAGATTTGAGGAGA 57.613 37.500 0.00 0.00 0.00 3.71
1426 5601 6.973642 TCCCATTTGTAAGATTTGAGGAGAT 58.026 36.000 0.00 0.00 0.00 2.75
1427 5602 7.413446 TCCCATTTGTAAGATTTGAGGAGATT 58.587 34.615 0.00 0.00 0.00 2.40
1428 5603 7.340232 TCCCATTTGTAAGATTTGAGGAGATTG 59.660 37.037 0.00 0.00 0.00 2.67
1429 5604 6.976925 CCATTTGTAAGATTTGAGGAGATTGC 59.023 38.462 0.00 0.00 0.00 3.56
1430 5605 6.515272 TTTGTAAGATTTGAGGAGATTGCC 57.485 37.500 0.00 0.00 0.00 4.52
1431 5606 4.526970 TGTAAGATTTGAGGAGATTGCCC 58.473 43.478 0.00 0.00 0.00 5.36
1432 5607 4.228210 TGTAAGATTTGAGGAGATTGCCCT 59.772 41.667 0.00 0.00 36.57 5.19
1433 5608 5.428457 TGTAAGATTTGAGGAGATTGCCCTA 59.572 40.000 0.00 0.00 33.36 3.53
1434 5609 4.703379 AGATTTGAGGAGATTGCCCTAG 57.297 45.455 0.00 0.00 33.36 3.02
1435 5610 2.717639 TTTGAGGAGATTGCCCTAGC 57.282 50.000 0.00 0.00 40.48 3.42
1450 5625 5.175090 GCCCTAGCAACACATAATTTCTC 57.825 43.478 0.00 0.00 39.53 2.87
1451 5626 4.260784 GCCCTAGCAACACATAATTTCTCG 60.261 45.833 0.00 0.00 39.53 4.04
1452 5627 4.273480 CCCTAGCAACACATAATTTCTCGG 59.727 45.833 0.00 0.00 0.00 4.63
1453 5628 5.116180 CCTAGCAACACATAATTTCTCGGA 58.884 41.667 0.00 0.00 0.00 4.55
1454 5629 5.584649 CCTAGCAACACATAATTTCTCGGAA 59.415 40.000 0.00 0.00 0.00 4.30
1455 5630 5.957842 AGCAACACATAATTTCTCGGAAA 57.042 34.783 2.25 2.25 0.00 3.13
1456 5631 5.699839 AGCAACACATAATTTCTCGGAAAC 58.300 37.500 1.85 0.00 0.00 2.78
1457 5632 5.240623 AGCAACACATAATTTCTCGGAAACA 59.759 36.000 1.85 0.00 0.00 2.83
1458 5633 6.071952 AGCAACACATAATTTCTCGGAAACAT 60.072 34.615 1.85 0.00 0.00 2.71
1459 5634 6.033831 GCAACACATAATTTCTCGGAAACATG 59.966 38.462 14.46 14.46 0.00 3.21
1460 5635 6.817765 ACACATAATTTCTCGGAAACATGT 57.182 33.333 15.23 15.23 0.00 3.21
1461 5636 7.915293 ACACATAATTTCTCGGAAACATGTA 57.085 32.000 17.89 0.00 0.00 2.29
1462 5637 8.506168 ACACATAATTTCTCGGAAACATGTAT 57.494 30.769 17.89 11.02 0.00 2.29
1463 5638 8.397906 ACACATAATTTCTCGGAAACATGTATG 58.602 33.333 17.89 15.28 0.00 2.39
1464 5639 8.611757 CACATAATTTCTCGGAAACATGTATGA 58.388 33.333 17.89 0.00 0.00 2.15
1465 5640 9.342308 ACATAATTTCTCGGAAACATGTATGAT 57.658 29.630 17.36 0.00 0.00 2.45
1468 5643 5.484173 TTCTCGGAAACATGTATGATTGC 57.516 39.130 0.00 0.00 0.00 3.56
1469 5644 4.512484 TCTCGGAAACATGTATGATTGCA 58.488 39.130 0.00 0.00 31.99 4.08
1470 5645 5.125356 TCTCGGAAACATGTATGATTGCAT 58.875 37.500 0.00 0.00 38.54 3.96
1471 5646 6.287525 TCTCGGAAACATGTATGATTGCATA 58.712 36.000 0.00 0.00 35.94 3.14
1472 5647 6.424812 TCTCGGAAACATGTATGATTGCATAG 59.575 38.462 0.00 0.00 37.65 2.23
1473 5648 6.054941 TCGGAAACATGTATGATTGCATAGT 58.945 36.000 0.00 0.00 37.65 2.12
1474 5649 7.213678 TCGGAAACATGTATGATTGCATAGTA 58.786 34.615 0.00 0.00 37.65 1.82
1475 5650 7.170828 TCGGAAACATGTATGATTGCATAGTAC 59.829 37.037 0.00 0.00 37.65 2.73
1476 5651 7.171508 CGGAAACATGTATGATTGCATAGTACT 59.828 37.037 0.00 0.00 37.65 2.73
1477 5652 9.489084 GGAAACATGTATGATTGCATAGTACTA 57.511 33.333 4.77 4.77 37.65 1.82
1509 5684 6.932356 TTACTGGAGAAGAAATGATCATGC 57.068 37.500 9.46 4.83 0.00 4.06
1510 5685 4.205587 ACTGGAGAAGAAATGATCATGCC 58.794 43.478 9.46 4.25 0.00 4.40
1511 5686 4.204799 CTGGAGAAGAAATGATCATGCCA 58.795 43.478 9.46 7.61 0.00 4.92
1512 5687 4.800023 TGGAGAAGAAATGATCATGCCAT 58.200 39.130 9.46 0.00 0.00 4.40
1513 5688 5.205821 TGGAGAAGAAATGATCATGCCATT 58.794 37.500 9.46 0.00 35.92 3.16
1514 5689 5.659525 TGGAGAAGAAATGATCATGCCATTT 59.340 36.000 19.13 19.13 44.23 2.32
1515 5690 6.155565 TGGAGAAGAAATGATCATGCCATTTT 59.844 34.615 19.69 0.00 42.35 1.82
1516 5691 6.479001 GGAGAAGAAATGATCATGCCATTTTG 59.521 38.462 19.69 0.00 42.35 2.44
1517 5692 6.942976 AGAAGAAATGATCATGCCATTTTGT 58.057 32.000 19.69 13.70 42.35 2.83
1518 5693 7.391620 AGAAGAAATGATCATGCCATTTTGTT 58.608 30.769 19.69 16.84 42.35 2.83
1519 5694 7.881232 AGAAGAAATGATCATGCCATTTTGTTT 59.119 29.630 19.69 15.72 42.35 2.83
1520 5695 7.372451 AGAAATGATCATGCCATTTTGTTTG 57.628 32.000 19.69 0.00 42.35 2.93
1521 5696 7.162761 AGAAATGATCATGCCATTTTGTTTGA 58.837 30.769 19.69 0.00 42.35 2.69
1522 5697 7.662258 AGAAATGATCATGCCATTTTGTTTGAA 59.338 29.630 19.69 0.00 42.35 2.69
1523 5698 6.978343 ATGATCATGCCATTTTGTTTGAAG 57.022 33.333 7.59 0.00 0.00 3.02
1524 5699 6.099159 TGATCATGCCATTTTGTTTGAAGA 57.901 33.333 0.00 0.00 0.00 2.87
1525 5700 6.522946 TGATCATGCCATTTTGTTTGAAGAA 58.477 32.000 0.00 0.00 0.00 2.52
1526 5701 6.647481 TGATCATGCCATTTTGTTTGAAGAAG 59.353 34.615 0.00 0.00 0.00 2.85
1527 5702 5.299148 TCATGCCATTTTGTTTGAAGAAGG 58.701 37.500 0.00 0.00 0.00 3.46
1528 5703 3.465871 TGCCATTTTGTTTGAAGAAGGC 58.534 40.909 0.00 0.00 39.95 4.35
1529 5704 3.118482 TGCCATTTTGTTTGAAGAAGGCA 60.118 39.130 0.00 0.00 46.31 4.75
1530 5705 3.876320 GCCATTTTGTTTGAAGAAGGCAA 59.124 39.130 0.00 0.00 39.35 4.52
1531 5706 4.024641 GCCATTTTGTTTGAAGAAGGCAAG 60.025 41.667 0.00 0.00 39.35 4.01
1532 5707 5.358922 CCATTTTGTTTGAAGAAGGCAAGA 58.641 37.500 0.00 0.00 0.00 3.02
1533 5708 5.816777 CCATTTTGTTTGAAGAAGGCAAGAA 59.183 36.000 0.00 0.00 0.00 2.52
1534 5709 6.238184 CCATTTTGTTTGAAGAAGGCAAGAAC 60.238 38.462 0.00 0.00 0.00 3.01
1535 5710 5.398603 TTTGTTTGAAGAAGGCAAGAACA 57.601 34.783 0.00 0.00 0.00 3.18
1536 5711 4.637483 TGTTTGAAGAAGGCAAGAACAG 57.363 40.909 0.00 0.00 0.00 3.16
1537 5712 3.381272 TGTTTGAAGAAGGCAAGAACAGG 59.619 43.478 0.00 0.00 0.00 4.00
1538 5713 3.576078 TTGAAGAAGGCAAGAACAGGA 57.424 42.857 0.00 0.00 0.00 3.86
1539 5714 2.851195 TGAAGAAGGCAAGAACAGGAC 58.149 47.619 0.00 0.00 0.00 3.85
1540 5715 2.155279 GAAGAAGGCAAGAACAGGACC 58.845 52.381 0.00 0.00 0.00 4.46
1541 5716 0.402121 AGAAGGCAAGAACAGGACCC 59.598 55.000 0.00 0.00 0.00 4.46
1542 5717 0.110486 GAAGGCAAGAACAGGACCCA 59.890 55.000 0.00 0.00 0.00 4.51
1543 5718 0.111253 AAGGCAAGAACAGGACCCAG 59.889 55.000 0.00 0.00 0.00 4.45
1544 5719 1.303643 GGCAAGAACAGGACCCAGG 60.304 63.158 0.00 0.00 0.00 4.45
1545 5720 1.303643 GCAAGAACAGGACCCAGGG 60.304 63.158 2.85 2.85 0.00 4.45
1546 5721 1.779061 GCAAGAACAGGACCCAGGGA 61.779 60.000 14.54 0.00 0.00 4.20
1547 5722 0.771127 CAAGAACAGGACCCAGGGAA 59.229 55.000 14.54 0.00 0.00 3.97
1548 5723 1.144913 CAAGAACAGGACCCAGGGAAA 59.855 52.381 14.54 0.00 0.00 3.13
1549 5724 1.068121 AGAACAGGACCCAGGGAAAG 58.932 55.000 14.54 1.12 0.00 2.62
1554 5729 1.152830 GGACCCAGGGAAAGCACAA 59.847 57.895 14.54 0.00 0.00 3.33
1559 5734 1.251251 CCAGGGAAAGCACAAGAAGG 58.749 55.000 0.00 0.00 0.00 3.46
1560 5735 0.600057 CAGGGAAAGCACAAGAAGGC 59.400 55.000 0.00 0.00 0.00 4.35
1563 5738 1.518903 GGAAAGCACAAGAAGGCGCT 61.519 55.000 7.64 0.00 35.90 5.92
1566 5741 1.826385 AAGCACAAGAAGGCGCTATT 58.174 45.000 7.64 2.03 33.45 1.73
1573 5748 0.536006 AGAAGGCGCTATTGGATGGC 60.536 55.000 7.64 0.00 0.00 4.40
1576 5751 1.227943 GGCGCTATTGGATGGCTCA 60.228 57.895 7.64 0.00 34.23 4.26
1620 5795 4.228210 TGTAAGATTTGAGGAGATTGCCCT 59.772 41.667 0.00 0.00 36.57 5.19
1621 5796 5.428457 TGTAAGATTTGAGGAGATTGCCCTA 59.572 40.000 0.00 0.00 33.36 3.53
1622 5797 4.703379 AGATTTGAGGAGATTGCCCTAG 57.297 45.455 0.00 0.00 33.36 3.02
1623 5798 2.717639 TTTGAGGAGATTGCCCTAGC 57.282 50.000 0.00 0.00 40.48 3.42
1638 5813 5.175090 GCCCTAGCAACACATAATTTCTC 57.825 43.478 0.00 0.00 39.53 2.87
1639 5814 4.260784 GCCCTAGCAACACATAATTTCTCG 60.261 45.833 0.00 0.00 39.53 4.04
1640 5815 4.273480 CCCTAGCAACACATAATTTCTCGG 59.727 45.833 0.00 0.00 0.00 4.63
1641 5816 5.116180 CCTAGCAACACATAATTTCTCGGA 58.884 41.667 0.00 0.00 0.00 4.55
1642 5817 5.584649 CCTAGCAACACATAATTTCTCGGAA 59.415 40.000 0.00 0.00 0.00 4.30
1643 5818 5.957842 AGCAACACATAATTTCTCGGAAA 57.042 34.783 2.25 2.25 0.00 3.13
1644 5819 5.699839 AGCAACACATAATTTCTCGGAAAC 58.300 37.500 1.85 0.00 0.00 2.78
1645 5820 5.240623 AGCAACACATAATTTCTCGGAAACA 59.759 36.000 1.85 0.00 0.00 2.83
1646 5821 6.071952 AGCAACACATAATTTCTCGGAAACAT 60.072 34.615 1.85 0.00 0.00 2.71
1647 5822 6.033831 GCAACACATAATTTCTCGGAAACATG 59.966 38.462 14.46 14.46 0.00 3.21
1648 5823 6.817765 ACACATAATTTCTCGGAAACATGT 57.182 33.333 15.23 15.23 0.00 3.21
1649 5824 7.915293 ACACATAATTTCTCGGAAACATGTA 57.085 32.000 17.89 0.00 0.00 2.29
1650 5825 8.506168 ACACATAATTTCTCGGAAACATGTAT 57.494 30.769 17.89 11.02 0.00 2.29
1651 5826 8.397906 ACACATAATTTCTCGGAAACATGTATG 58.602 33.333 17.89 15.28 0.00 2.39
1652 5827 8.611757 CACATAATTTCTCGGAAACATGTATGA 58.388 33.333 17.89 0.00 0.00 2.15
1653 5828 9.342308 ACATAATTTCTCGGAAACATGTATGAT 57.658 29.630 17.36 0.00 0.00 2.45
1656 5831 5.484173 TTCTCGGAAACATGTATGATTGC 57.516 39.130 0.00 0.00 0.00 3.56
1657 5832 4.512484 TCTCGGAAACATGTATGATTGCA 58.488 39.130 0.00 0.00 31.99 4.08
1658 5833 5.125356 TCTCGGAAACATGTATGATTGCAT 58.875 37.500 0.00 0.00 38.54 3.96
1659 5834 6.287525 TCTCGGAAACATGTATGATTGCATA 58.712 36.000 0.00 0.00 35.94 3.14
1660 5835 6.424812 TCTCGGAAACATGTATGATTGCATAG 59.575 38.462 0.00 0.00 37.65 2.23
1661 5836 6.054941 TCGGAAACATGTATGATTGCATAGT 58.945 36.000 0.00 0.00 37.65 2.12
1662 5837 7.213678 TCGGAAACATGTATGATTGCATAGTA 58.786 34.615 0.00 0.00 37.65 1.82
1663 5838 7.170828 TCGGAAACATGTATGATTGCATAGTAC 59.829 37.037 0.00 0.00 37.65 2.73
1664 5839 7.171508 CGGAAACATGTATGATTGCATAGTACT 59.828 37.037 0.00 0.00 37.65 2.73
1665 5840 9.489084 GGAAACATGTATGATTGCATAGTACTA 57.511 33.333 4.77 4.77 37.65 1.82
1697 5872 6.932356 TTACTGGAGAAGAAATGATCATGC 57.068 37.500 9.46 4.83 0.00 4.06
1698 5873 4.205587 ACTGGAGAAGAAATGATCATGCC 58.794 43.478 9.46 4.25 0.00 4.40
1699 5874 4.204799 CTGGAGAAGAAATGATCATGCCA 58.795 43.478 9.46 7.61 0.00 4.92
1700 5875 4.800023 TGGAGAAGAAATGATCATGCCAT 58.200 39.130 9.46 0.00 0.00 4.40
1701 5876 5.205821 TGGAGAAGAAATGATCATGCCATT 58.794 37.500 9.46 0.00 35.92 3.16
1702 5877 5.659525 TGGAGAAGAAATGATCATGCCATTT 59.340 36.000 19.13 19.13 44.23 2.32
1703 5878 6.155565 TGGAGAAGAAATGATCATGCCATTTT 59.844 34.615 19.69 0.00 42.35 1.82
1704 5879 6.479001 GGAGAAGAAATGATCATGCCATTTTG 59.521 38.462 19.69 0.00 42.35 2.44
1705 5880 6.942976 AGAAGAAATGATCATGCCATTTTGT 58.057 32.000 19.69 13.70 42.35 2.83
1706 5881 7.391620 AGAAGAAATGATCATGCCATTTTGTT 58.608 30.769 19.69 16.84 42.35 2.83
1707 5882 7.881232 AGAAGAAATGATCATGCCATTTTGTTT 59.119 29.630 19.69 15.72 42.35 2.83
1708 5883 7.372451 AGAAATGATCATGCCATTTTGTTTG 57.628 32.000 19.69 0.00 42.35 2.93
1709 5884 7.162761 AGAAATGATCATGCCATTTTGTTTGA 58.837 30.769 19.69 0.00 42.35 2.69
1712 5887 6.099159 TGATCATGCCATTTTGTTTGAAGA 57.901 33.333 0.00 0.00 0.00 2.87
1727 5902 2.851195 TGAAGAAGGCAAGAACAGGAC 58.149 47.619 0.00 0.00 0.00 3.85
1737 5912 1.068121 AGAACAGGACCCAGGGAAAG 58.932 55.000 14.54 1.12 0.00 2.62
1751 5926 1.518903 GGAAAGCACAAGAAGGCGCT 61.519 55.000 7.64 0.00 35.90 5.92
1761 5936 0.536006 AGAAGGCGCTATTGGATGGC 60.536 55.000 7.64 0.00 0.00 4.40
1800 5975 7.651027 ATTCCCATTTGTAAGATTTGAGGAG 57.349 36.000 0.00 0.00 0.00 3.69
1827 6002 4.260784 GCCCTAGCAACACATAATTTCTCG 60.261 45.833 0.00 0.00 39.53 4.04
1841 6016 8.612619 ACATAATTTCTCGGAAACATGTATGAC 58.387 33.333 17.36 0.00 0.00 3.06
1941 11836 9.889128 TTCACATGACAAATTCAGATCTACATA 57.111 29.630 0.00 0.00 37.77 2.29
2353 12269 4.661222 TCAAGGCTGACCATAATTCACAA 58.339 39.130 0.00 0.00 39.06 3.33
2548 12482 5.491323 TCCAAACCCCATTTCAAATAACC 57.509 39.130 0.00 0.00 0.00 2.85
2659 12595 0.727398 GGCGTGTTGCTATTGGAGAC 59.273 55.000 0.00 0.00 45.43 3.36
2701 12640 2.124403 CAGCAGTCCCATGGGCTC 60.124 66.667 27.41 20.29 33.60 4.70
2730 12669 4.770287 CCTCATAGCTTACGTACGTACAG 58.230 47.826 26.83 24.08 0.00 2.74
3024 12980 2.185350 CTACACTGCCAGCTCCCG 59.815 66.667 0.00 0.00 0.00 5.14
3130 13086 6.271857 ACTCTTACTGGTATAGAGGGTCGATA 59.728 42.308 16.38 0.00 39.73 2.92
3160 13116 9.669887 TGGTTCGGTACTTTTATATGTGTAATT 57.330 29.630 0.00 0.00 0.00 1.40
3174 13130 4.381411 TGTGTAATTCGATGTGTTGGACA 58.619 39.130 0.00 0.00 39.53 4.02
3181 13151 3.247442 TCGATGTGTTGGACATTACGTC 58.753 45.455 0.00 0.00 45.90 4.34
3274 13245 1.953559 ACTGAATGTGCTCGTGTGTT 58.046 45.000 0.00 0.00 0.00 3.32
3276 13247 2.032054 ACTGAATGTGCTCGTGTGTTTG 59.968 45.455 0.00 0.00 0.00 2.93
3277 13248 1.268488 TGAATGTGCTCGTGTGTTTGC 60.268 47.619 0.00 0.00 0.00 3.68
3280 13251 1.367665 GTGCTCGTGTGTTTGCGTC 60.368 57.895 0.00 0.00 0.00 5.19
3281 13252 2.128128 GCTCGTGTGTTTGCGTCG 60.128 61.111 0.00 0.00 0.00 5.12
3282 13253 2.867091 GCTCGTGTGTTTGCGTCGT 61.867 57.895 0.00 0.00 0.00 4.34
3283 13254 1.198397 CTCGTGTGTTTGCGTCGTC 59.802 57.895 0.00 0.00 0.00 4.20
3364 13340 8.627487 TGAGAACATCAAACACAAAATACAAC 57.373 30.769 0.00 0.00 34.02 3.32
3450 13561 5.258841 ACAGAATTGATGATGATGGTGTGT 58.741 37.500 0.00 0.00 0.00 3.72
3476 13587 1.717032 TCCTGCAATATAGGCCGTCT 58.283 50.000 0.00 0.00 35.23 4.18
3511 13622 8.528643 TCTGACGGATAGAAAGAAAAACTATGA 58.471 33.333 0.00 0.00 0.00 2.15
3559 13670 4.222588 CCCCTCTCCACATTTGCAAATAAA 59.777 41.667 23.69 9.09 0.00 1.40
3585 13696 3.173965 TCCCTCGTTCATCCTTTTCTCT 58.826 45.455 0.00 0.00 0.00 3.10
3622 13735 9.394767 ACTACTCATACAAATGCATTGATGTTA 57.605 29.630 19.10 13.46 41.85 2.41
3624 13737 7.188834 ACTCATACAAATGCATTGATGTTACG 58.811 34.615 19.10 10.10 41.85 3.18
3631 13744 2.291741 TGCATTGATGTTACGTGCAACA 59.708 40.909 6.37 6.37 42.22 3.33
3634 13747 3.326733 TTGATGTTACGTGCAACACAC 57.673 42.857 6.05 5.05 46.45 3.82
3695 13808 2.183478 TGGTGAATCGTGAAGCATGT 57.817 45.000 0.00 0.00 0.00 3.21
3748 13949 1.265635 TCGTTTCACCAATTCAAGCCG 59.734 47.619 0.00 0.00 0.00 5.52
3750 13951 2.665519 CGTTTCACCAATTCAAGCCGAG 60.666 50.000 0.00 0.00 0.00 4.63
3755 13956 1.073923 ACCAATTCAAGCCGAGGAAGT 59.926 47.619 0.00 0.00 0.00 3.01
3794 13995 1.301160 ACAAACCCCTTCCCCAACCT 61.301 55.000 0.00 0.00 0.00 3.50
3795 13996 0.781278 CAAACCCCTTCCCCAACCTA 59.219 55.000 0.00 0.00 0.00 3.08
3809 14014 0.333993 AACCTAGGGCGAGACACCTA 59.666 55.000 14.81 0.00 38.30 3.08
3821 14026 3.619979 CGAGACACCTAAGAGGCCAAATT 60.620 47.826 5.01 0.00 39.63 1.82
3824 14029 4.043435 AGACACCTAAGAGGCCAAATTTCT 59.957 41.667 5.01 0.00 39.63 2.52
3825 14030 4.336280 ACACCTAAGAGGCCAAATTTCTC 58.664 43.478 5.01 0.00 39.63 2.87
3870 14075 1.595109 CTTGAGCAGCACACCGACA 60.595 57.895 0.00 0.00 0.00 4.35
3886 14091 1.081892 GACAATGTCGATGCTGCTGT 58.918 50.000 0.00 0.00 0.00 4.40
3888 14093 0.098200 CAATGTCGATGCTGCTGTGG 59.902 55.000 0.00 0.00 0.00 4.17
3942 16225 3.316308 ACGTAGTATGTTCACCCGATACC 59.684 47.826 0.00 0.00 41.94 2.73
3943 16226 3.316029 CGTAGTATGTTCACCCGATACCA 59.684 47.826 0.00 0.00 0.00 3.25
3982 16265 9.185192 CAAATGTCAAACAGGAGAAATCTAAAC 57.815 33.333 0.00 0.00 0.00 2.01
4028 16860 6.296026 TGTATATTACTAGCAAAAGGGCCAG 58.704 40.000 6.18 0.00 0.00 4.85
4030 16862 2.489938 TACTAGCAAAAGGGCCAGTG 57.510 50.000 6.18 0.86 36.43 3.66
4031 16863 0.895559 ACTAGCAAAAGGGCCAGTGC 60.896 55.000 15.83 15.83 34.44 4.40
4033 16865 0.251742 TAGCAAAAGGGCCAGTGCAT 60.252 50.000 22.81 13.08 39.50 3.96
4034 16866 1.123246 AGCAAAAGGGCCAGTGCATT 61.123 50.000 22.81 5.68 39.50 3.56
4040 16872 2.431260 GGCCAGTGCATTGCAACG 60.431 61.111 13.94 7.23 41.47 4.10
4041 16873 2.431260 GCCAGTGCATTGCAACGG 60.431 61.111 13.94 16.92 41.47 4.44
4043 16875 2.267351 CCAGTGCATTGCAACGGGA 61.267 57.895 13.94 0.00 41.47 5.14
4044 16876 1.210931 CAGTGCATTGCAACGGGAG 59.789 57.895 13.94 0.00 41.47 4.30
4093 16925 4.693283 CCATGATCAGATTTTGCTGCATT 58.307 39.130 1.84 0.00 35.86 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 3869 0.541863 CTTTCCAGGATACCAGGCGT 59.458 55.000 0.00 0.00 32.51 5.68
186 4033 1.514678 GCGCTGGTGTTGGTCATCAA 61.515 55.000 0.00 0.00 36.67 2.57
240 4087 5.007332 CGCTAAATATTGCGTAGGTTTCCTT 59.993 40.000 11.00 0.00 46.09 3.36
293 4140 3.390521 CCGGAGTAGGCCAGCACA 61.391 66.667 5.01 0.00 0.00 4.57
508 4373 1.510480 GCAACGCAGTGCCTCTTTCT 61.510 55.000 10.11 0.00 45.00 2.52
560 4425 1.227438 CACGAACTTGTCCGGTGGT 60.227 57.895 0.00 0.00 0.00 4.16
581 4446 1.066071 TCCAACAACGTGTCTCCAACA 60.066 47.619 0.00 0.00 34.78 3.33
595 4460 1.971167 GCCGCACATTCCTCCAACA 60.971 57.895 0.00 0.00 0.00 3.33
650 4516 1.376543 CACTGCTCAGGTTGGCATAG 58.623 55.000 1.66 0.00 37.83 2.23
687 4553 0.249155 CACAACAAGCACCTTGGCAG 60.249 55.000 9.50 2.11 44.81 4.85
755 4621 0.173481 GCCGCAGATAGAGTGTGTCA 59.827 55.000 0.00 0.00 0.00 3.58
857 4723 2.279741 GAGTTGTGCTGTGTCTTGTCA 58.720 47.619 0.00 0.00 0.00 3.58
871 4737 1.835712 AAGGTCGTCCCCGAGTTGT 60.836 57.895 0.00 0.00 45.26 3.32
885 4751 8.940397 AATAAAGTATTATGCATAGCCAAGGT 57.060 30.769 6.50 0.00 32.06 3.50
929 4802 4.453819 CAGTGCTCCTTCTTGTCCTTTTAG 59.546 45.833 0.00 0.00 0.00 1.85
939 4812 0.761187 TCACTGCAGTGCTCCTTCTT 59.239 50.000 36.76 0.69 45.25 2.52
940 4813 0.761187 TTCACTGCAGTGCTCCTTCT 59.239 50.000 36.76 1.51 45.25 2.85
941 4814 1.155042 CTTCACTGCAGTGCTCCTTC 58.845 55.000 36.76 0.00 45.25 3.46
954 4827 4.357918 AACTGGCAGTACAATCTTCACT 57.642 40.909 22.37 0.00 0.00 3.41
1045 4918 5.878116 TGTTTCGGGAATGTAAGGAATGTAG 59.122 40.000 0.00 0.00 0.00 2.74
1053 4943 6.254281 ACTTGAATGTTTCGGGAATGTAAG 57.746 37.500 0.00 0.00 0.00 2.34
1079 4969 5.783360 TGGTATGGGGGTACAATAGATACAG 59.217 44.000 0.00 0.00 0.00 2.74
1100 4990 5.258051 TGGGATTTATAAAGCTTTCGTGGT 58.742 37.500 16.57 0.25 0.00 4.16
1104 4994 7.930217 TCTTCATGGGATTTATAAAGCTTTCG 58.070 34.615 16.57 1.35 0.00 3.46
1119 5009 3.385314 TGGATTTGCATCTTCATGGGA 57.615 42.857 0.00 0.00 0.00 4.37
1122 5012 4.051237 CAGCATGGATTTGCATCTTCATG 58.949 43.478 11.29 11.29 45.23 3.07
1146 5076 1.343789 TGAATTGCCACCACCACATTG 59.656 47.619 0.00 0.00 0.00 2.82
1197 5127 2.286872 CAGCGCAGGATCAAGAGAAAT 58.713 47.619 11.47 0.00 0.00 2.17
1229 5223 3.642705 TGAACACTCAAGTCATCACTCG 58.357 45.455 0.00 0.00 29.93 4.18
1236 5230 4.407621 TCCCTTAGTTGAACACTCAAGTCA 59.592 41.667 0.00 0.00 42.97 3.41
1357 5532 4.541020 GCGCCTTCTTGTGCTTTC 57.459 55.556 0.00 0.00 38.69 2.62
1400 5575 7.413446 TCTCCTCAAATCTTACAAATGGGAAT 58.587 34.615 0.00 0.00 0.00 3.01
1401 5576 6.789268 TCTCCTCAAATCTTACAAATGGGAA 58.211 36.000 0.00 0.00 0.00 3.97
1402 5577 6.387192 TCTCCTCAAATCTTACAAATGGGA 57.613 37.500 0.00 0.00 0.00 4.37
1403 5578 7.486647 CAATCTCCTCAAATCTTACAAATGGG 58.513 38.462 0.00 0.00 0.00 4.00
1404 5579 6.976925 GCAATCTCCTCAAATCTTACAAATGG 59.023 38.462 0.00 0.00 0.00 3.16
1405 5580 6.976925 GGCAATCTCCTCAAATCTTACAAATG 59.023 38.462 0.00 0.00 0.00 2.32
1406 5581 6.097412 GGGCAATCTCCTCAAATCTTACAAAT 59.903 38.462 0.00 0.00 0.00 2.32
1407 5582 5.418840 GGGCAATCTCCTCAAATCTTACAAA 59.581 40.000 0.00 0.00 0.00 2.83
1408 5583 4.949856 GGGCAATCTCCTCAAATCTTACAA 59.050 41.667 0.00 0.00 0.00 2.41
1409 5584 4.228210 AGGGCAATCTCCTCAAATCTTACA 59.772 41.667 0.00 0.00 0.00 2.41
1410 5585 4.786425 AGGGCAATCTCCTCAAATCTTAC 58.214 43.478 0.00 0.00 0.00 2.34
1411 5586 5.455326 GCTAGGGCAATCTCCTCAAATCTTA 60.455 44.000 0.00 0.00 38.54 2.10
1412 5587 4.688321 GCTAGGGCAATCTCCTCAAATCTT 60.688 45.833 0.00 0.00 38.54 2.40
1413 5588 3.181446 GCTAGGGCAATCTCCTCAAATCT 60.181 47.826 0.00 0.00 38.54 2.40
1414 5589 3.145286 GCTAGGGCAATCTCCTCAAATC 58.855 50.000 0.00 0.00 38.54 2.17
1415 5590 2.511218 TGCTAGGGCAATCTCCTCAAAT 59.489 45.455 0.00 0.00 46.36 2.32
1416 5591 1.915489 TGCTAGGGCAATCTCCTCAAA 59.085 47.619 0.00 0.00 46.36 2.69
1417 5592 1.583556 TGCTAGGGCAATCTCCTCAA 58.416 50.000 0.00 0.00 46.36 3.02
1418 5593 3.322501 TGCTAGGGCAATCTCCTCA 57.677 52.632 0.00 0.00 46.36 3.86
1428 5603 4.260784 CGAGAAATTATGTGTTGCTAGGGC 60.261 45.833 0.00 0.00 39.26 5.19
1429 5604 4.273480 CCGAGAAATTATGTGTTGCTAGGG 59.727 45.833 0.00 0.00 0.00 3.53
1430 5605 5.116180 TCCGAGAAATTATGTGTTGCTAGG 58.884 41.667 0.00 0.00 0.00 3.02
1431 5606 6.662414 TTCCGAGAAATTATGTGTTGCTAG 57.338 37.500 0.00 0.00 0.00 3.42
1432 5607 6.428465 TGTTTCCGAGAAATTATGTGTTGCTA 59.572 34.615 3.00 0.00 0.00 3.49
1433 5608 5.240623 TGTTTCCGAGAAATTATGTGTTGCT 59.759 36.000 3.00 0.00 0.00 3.91
1434 5609 5.457140 TGTTTCCGAGAAATTATGTGTTGC 58.543 37.500 3.00 0.00 0.00 4.17
1435 5610 7.083858 ACATGTTTCCGAGAAATTATGTGTTG 58.916 34.615 19.18 6.82 0.00 3.33
1436 5611 7.214467 ACATGTTTCCGAGAAATTATGTGTT 57.786 32.000 19.18 6.76 0.00 3.32
1437 5612 6.817765 ACATGTTTCCGAGAAATTATGTGT 57.182 33.333 19.18 11.22 0.00 3.72
1438 5613 8.611757 TCATACATGTTTCCGAGAAATTATGTG 58.388 33.333 23.34 16.01 0.00 3.21
1439 5614 8.731275 TCATACATGTTTCCGAGAAATTATGT 57.269 30.769 21.21 21.21 0.00 2.29
1442 5617 8.128582 GCAATCATACATGTTTCCGAGAAATTA 58.871 33.333 2.30 0.00 0.00 1.40
1443 5618 6.974622 GCAATCATACATGTTTCCGAGAAATT 59.025 34.615 2.30 0.00 0.00 1.82
1444 5619 6.095300 TGCAATCATACATGTTTCCGAGAAAT 59.905 34.615 2.30 0.00 0.00 2.17
1445 5620 5.414144 TGCAATCATACATGTTTCCGAGAAA 59.586 36.000 2.30 0.00 0.00 2.52
1446 5621 4.940654 TGCAATCATACATGTTTCCGAGAA 59.059 37.500 2.30 0.00 0.00 2.87
1447 5622 4.512484 TGCAATCATACATGTTTCCGAGA 58.488 39.130 2.30 0.00 0.00 4.04
1448 5623 4.880886 TGCAATCATACATGTTTCCGAG 57.119 40.909 2.30 0.00 0.00 4.63
1449 5624 6.054941 ACTATGCAATCATACATGTTTCCGA 58.945 36.000 2.30 0.00 34.22 4.55
1450 5625 6.304356 ACTATGCAATCATACATGTTTCCG 57.696 37.500 2.30 0.00 34.22 4.30
1451 5626 8.383318 AGTACTATGCAATCATACATGTTTCC 57.617 34.615 2.30 0.00 34.22 3.13
1483 5658 9.060347 GCATGATCATTTCTTCTCCAGTAAATA 57.940 33.333 5.16 0.00 0.00 1.40
1484 5659 7.014038 GGCATGATCATTTCTTCTCCAGTAAAT 59.986 37.037 5.16 0.00 0.00 1.40
1485 5660 6.319658 GGCATGATCATTTCTTCTCCAGTAAA 59.680 38.462 5.16 0.00 0.00 2.01
1486 5661 5.824624 GGCATGATCATTTCTTCTCCAGTAA 59.175 40.000 5.16 0.00 0.00 2.24
1487 5662 5.104402 TGGCATGATCATTTCTTCTCCAGTA 60.104 40.000 5.16 0.00 0.00 2.74
1488 5663 4.205587 GGCATGATCATTTCTTCTCCAGT 58.794 43.478 5.16 0.00 0.00 4.00
1489 5664 4.204799 TGGCATGATCATTTCTTCTCCAG 58.795 43.478 5.16 0.00 0.00 3.86
1490 5665 4.239428 TGGCATGATCATTTCTTCTCCA 57.761 40.909 5.16 2.56 0.00 3.86
1491 5666 5.786264 AATGGCATGATCATTTCTTCTCC 57.214 39.130 5.16 0.03 31.49 3.71
1492 5667 7.039882 ACAAAATGGCATGATCATTTCTTCTC 58.960 34.615 20.27 0.00 42.06 2.87
1493 5668 6.942976 ACAAAATGGCATGATCATTTCTTCT 58.057 32.000 20.27 8.50 42.06 2.85
1494 5669 7.605410 AACAAAATGGCATGATCATTTCTTC 57.395 32.000 20.27 0.00 42.06 2.87
1495 5670 7.662258 TCAAACAAAATGGCATGATCATTTCTT 59.338 29.630 20.27 14.42 42.06 2.52
1496 5671 7.162761 TCAAACAAAATGGCATGATCATTTCT 58.837 30.769 20.27 12.11 42.06 2.52
1497 5672 7.367159 TCAAACAAAATGGCATGATCATTTC 57.633 32.000 20.27 1.76 42.06 2.17
1498 5673 7.662258 TCTTCAAACAAAATGGCATGATCATTT 59.338 29.630 5.16 16.62 43.97 2.32
1499 5674 7.162761 TCTTCAAACAAAATGGCATGATCATT 58.837 30.769 5.16 2.74 36.50 2.57
1500 5675 6.703319 TCTTCAAACAAAATGGCATGATCAT 58.297 32.000 1.18 1.18 0.00 2.45
1501 5676 6.099159 TCTTCAAACAAAATGGCATGATCA 57.901 33.333 0.00 0.00 0.00 2.92
1502 5677 6.091713 CCTTCTTCAAACAAAATGGCATGATC 59.908 38.462 0.00 0.00 0.00 2.92
1503 5678 5.935789 CCTTCTTCAAACAAAATGGCATGAT 59.064 36.000 0.00 0.00 0.00 2.45
1504 5679 5.299148 CCTTCTTCAAACAAAATGGCATGA 58.701 37.500 0.00 0.00 0.00 3.07
1505 5680 4.083696 GCCTTCTTCAAACAAAATGGCATG 60.084 41.667 0.00 0.00 37.91 4.06
1506 5681 4.067192 GCCTTCTTCAAACAAAATGGCAT 58.933 39.130 0.00 0.00 37.91 4.40
1507 5682 3.118482 TGCCTTCTTCAAACAAAATGGCA 60.118 39.130 0.00 0.00 44.41 4.92
1508 5683 3.465871 TGCCTTCTTCAAACAAAATGGC 58.534 40.909 0.00 0.00 38.42 4.40
1509 5684 5.358922 TCTTGCCTTCTTCAAACAAAATGG 58.641 37.500 0.00 0.00 0.00 3.16
1510 5685 6.313411 TGTTCTTGCCTTCTTCAAACAAAATG 59.687 34.615 0.00 0.00 0.00 2.32
1511 5686 6.405538 TGTTCTTGCCTTCTTCAAACAAAAT 58.594 32.000 0.00 0.00 0.00 1.82
1512 5687 5.788450 TGTTCTTGCCTTCTTCAAACAAAA 58.212 33.333 0.00 0.00 0.00 2.44
1513 5688 5.398603 TGTTCTTGCCTTCTTCAAACAAA 57.601 34.783 0.00 0.00 0.00 2.83
1514 5689 4.142182 CCTGTTCTTGCCTTCTTCAAACAA 60.142 41.667 0.00 0.00 0.00 2.83
1515 5690 3.381272 CCTGTTCTTGCCTTCTTCAAACA 59.619 43.478 0.00 0.00 0.00 2.83
1516 5691 3.632145 TCCTGTTCTTGCCTTCTTCAAAC 59.368 43.478 0.00 0.00 0.00 2.93
1517 5692 3.632145 GTCCTGTTCTTGCCTTCTTCAAA 59.368 43.478 0.00 0.00 0.00 2.69
1518 5693 3.214328 GTCCTGTTCTTGCCTTCTTCAA 58.786 45.455 0.00 0.00 0.00 2.69
1519 5694 2.487265 GGTCCTGTTCTTGCCTTCTTCA 60.487 50.000 0.00 0.00 0.00 3.02
1520 5695 2.155279 GGTCCTGTTCTTGCCTTCTTC 58.845 52.381 0.00 0.00 0.00 2.87
1521 5696 1.202940 GGGTCCTGTTCTTGCCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
1522 5697 0.402121 GGGTCCTGTTCTTGCCTTCT 59.598 55.000 0.00 0.00 0.00 2.85
1523 5698 0.110486 TGGGTCCTGTTCTTGCCTTC 59.890 55.000 0.00 0.00 0.00 3.46
1524 5699 0.111253 CTGGGTCCTGTTCTTGCCTT 59.889 55.000 0.00 0.00 0.00 4.35
1525 5700 1.763770 CTGGGTCCTGTTCTTGCCT 59.236 57.895 0.00 0.00 0.00 4.75
1526 5701 1.303643 CCTGGGTCCTGTTCTTGCC 60.304 63.158 0.00 0.00 0.00 4.52
1527 5702 1.303643 CCCTGGGTCCTGTTCTTGC 60.304 63.158 3.97 0.00 0.00 4.01
1528 5703 0.771127 TTCCCTGGGTCCTGTTCTTG 59.229 55.000 13.56 0.00 0.00 3.02
1529 5704 1.425448 CTTTCCCTGGGTCCTGTTCTT 59.575 52.381 13.56 0.00 0.00 2.52
1530 5705 1.068121 CTTTCCCTGGGTCCTGTTCT 58.932 55.000 13.56 0.00 0.00 3.01
1531 5706 0.609406 GCTTTCCCTGGGTCCTGTTC 60.609 60.000 13.56 0.00 0.00 3.18
1532 5707 1.360393 TGCTTTCCCTGGGTCCTGTT 61.360 55.000 13.56 0.00 0.00 3.16
1533 5708 1.774217 TGCTTTCCCTGGGTCCTGT 60.774 57.895 13.56 0.00 0.00 4.00
1534 5709 1.303643 GTGCTTTCCCTGGGTCCTG 60.304 63.158 13.56 3.21 0.00 3.86
1535 5710 1.360393 TTGTGCTTTCCCTGGGTCCT 61.360 55.000 13.56 0.00 0.00 3.85
1536 5711 0.895559 CTTGTGCTTTCCCTGGGTCC 60.896 60.000 13.56 0.36 0.00 4.46
1537 5712 0.110486 TCTTGTGCTTTCCCTGGGTC 59.890 55.000 13.56 1.56 0.00 4.46
1538 5713 0.555769 TTCTTGTGCTTTCCCTGGGT 59.444 50.000 13.56 0.00 0.00 4.51
1539 5714 1.251251 CTTCTTGTGCTTTCCCTGGG 58.749 55.000 6.33 6.33 0.00 4.45
1540 5715 1.251251 CCTTCTTGTGCTTTCCCTGG 58.749 55.000 0.00 0.00 0.00 4.45
1541 5716 0.600057 GCCTTCTTGTGCTTTCCCTG 59.400 55.000 0.00 0.00 0.00 4.45
1542 5717 0.890996 CGCCTTCTTGTGCTTTCCCT 60.891 55.000 0.00 0.00 0.00 4.20
1543 5718 1.581447 CGCCTTCTTGTGCTTTCCC 59.419 57.895 0.00 0.00 0.00 3.97
1544 5719 1.081175 GCGCCTTCTTGTGCTTTCC 60.081 57.895 0.00 0.00 38.69 3.13
1545 5720 4.541020 GCGCCTTCTTGTGCTTTC 57.459 55.556 0.00 0.00 38.69 2.62
1549 5724 0.099436 CCAATAGCGCCTTCTTGTGC 59.901 55.000 2.29 0.00 42.02 4.57
1554 5729 0.536006 GCCATCCAATAGCGCCTTCT 60.536 55.000 2.29 0.00 0.00 2.85
1559 5734 0.590195 CTTGAGCCATCCAATAGCGC 59.410 55.000 0.00 0.00 0.00 5.92
1560 5735 1.600957 CACTTGAGCCATCCAATAGCG 59.399 52.381 0.00 0.00 0.00 4.26
1563 5738 5.378230 AAGATCACTTGAGCCATCCAATA 57.622 39.130 0.00 0.00 34.80 1.90
1576 5751 6.923199 ACAAATGGGAATTCAAGATCACTT 57.077 33.333 7.93 0.00 36.73 3.16
1620 5795 6.428465 TGTTTCCGAGAAATTATGTGTTGCTA 59.572 34.615 3.00 0.00 0.00 3.49
1621 5796 5.240623 TGTTTCCGAGAAATTATGTGTTGCT 59.759 36.000 3.00 0.00 0.00 3.91
1622 5797 5.457140 TGTTTCCGAGAAATTATGTGTTGC 58.543 37.500 3.00 0.00 0.00 4.17
1623 5798 7.083858 ACATGTTTCCGAGAAATTATGTGTTG 58.916 34.615 19.18 6.82 0.00 3.33
1624 5799 7.214467 ACATGTTTCCGAGAAATTATGTGTT 57.786 32.000 19.18 6.76 0.00 3.32
1625 5800 6.817765 ACATGTTTCCGAGAAATTATGTGT 57.182 33.333 19.18 11.22 0.00 3.72
1626 5801 8.611757 TCATACATGTTTCCGAGAAATTATGTG 58.388 33.333 23.34 16.01 0.00 3.21
1627 5802 8.731275 TCATACATGTTTCCGAGAAATTATGT 57.269 30.769 21.21 21.21 0.00 2.29
1630 5805 8.128582 GCAATCATACATGTTTCCGAGAAATTA 58.871 33.333 2.30 0.00 0.00 1.40
1631 5806 6.974622 GCAATCATACATGTTTCCGAGAAATT 59.025 34.615 2.30 0.00 0.00 1.82
1632 5807 6.095300 TGCAATCATACATGTTTCCGAGAAAT 59.905 34.615 2.30 0.00 0.00 2.17
1633 5808 5.414144 TGCAATCATACATGTTTCCGAGAAA 59.586 36.000 2.30 0.00 0.00 2.52
1634 5809 4.940654 TGCAATCATACATGTTTCCGAGAA 59.059 37.500 2.30 0.00 0.00 2.87
1635 5810 4.512484 TGCAATCATACATGTTTCCGAGA 58.488 39.130 2.30 0.00 0.00 4.04
1636 5811 4.880886 TGCAATCATACATGTTTCCGAG 57.119 40.909 2.30 0.00 0.00 4.63
1637 5812 6.054941 ACTATGCAATCATACATGTTTCCGA 58.945 36.000 2.30 0.00 34.22 4.55
1638 5813 6.304356 ACTATGCAATCATACATGTTTCCG 57.696 37.500 2.30 0.00 34.22 4.30
1639 5814 8.383318 AGTACTATGCAATCATACATGTTTCC 57.617 34.615 2.30 0.00 34.22 3.13
1671 5846 9.060347 GCATGATCATTTCTTCTCCAGTAAATA 57.940 33.333 5.16 0.00 0.00 1.40
1672 5847 7.014038 GGCATGATCATTTCTTCTCCAGTAAAT 59.986 37.037 5.16 0.00 0.00 1.40
1673 5848 6.319658 GGCATGATCATTTCTTCTCCAGTAAA 59.680 38.462 5.16 0.00 0.00 2.01
1674 5849 5.824624 GGCATGATCATTTCTTCTCCAGTAA 59.175 40.000 5.16 0.00 0.00 2.24
1675 5850 5.104402 TGGCATGATCATTTCTTCTCCAGTA 60.104 40.000 5.16 0.00 0.00 2.74
1676 5851 4.205587 GGCATGATCATTTCTTCTCCAGT 58.794 43.478 5.16 0.00 0.00 4.00
1677 5852 4.204799 TGGCATGATCATTTCTTCTCCAG 58.795 43.478 5.16 0.00 0.00 3.86
1678 5853 4.239428 TGGCATGATCATTTCTTCTCCA 57.761 40.909 5.16 2.56 0.00 3.86
1679 5854 5.786264 AATGGCATGATCATTTCTTCTCC 57.214 39.130 5.16 0.03 31.49 3.71
1680 5855 7.039882 ACAAAATGGCATGATCATTTCTTCTC 58.960 34.615 20.27 0.00 42.06 2.87
1681 5856 6.942976 ACAAAATGGCATGATCATTTCTTCT 58.057 32.000 20.27 8.50 42.06 2.85
1682 5857 7.605410 AACAAAATGGCATGATCATTTCTTC 57.395 32.000 20.27 0.00 42.06 2.87
1683 5858 7.662258 TCAAACAAAATGGCATGATCATTTCTT 59.338 29.630 20.27 14.42 42.06 2.52
1684 5859 7.162761 TCAAACAAAATGGCATGATCATTTCT 58.837 30.769 20.27 12.11 42.06 2.52
1685 5860 7.367159 TCAAACAAAATGGCATGATCATTTC 57.633 32.000 20.27 1.76 42.06 2.17
1686 5861 7.662258 TCTTCAAACAAAATGGCATGATCATTT 59.338 29.630 5.16 16.62 43.97 2.32
1687 5862 7.162761 TCTTCAAACAAAATGGCATGATCATT 58.837 30.769 5.16 2.74 36.50 2.57
1688 5863 6.703319 TCTTCAAACAAAATGGCATGATCAT 58.297 32.000 1.18 1.18 0.00 2.45
1689 5864 6.099159 TCTTCAAACAAAATGGCATGATCA 57.901 33.333 0.00 0.00 0.00 2.92
1690 5865 6.091713 CCTTCTTCAAACAAAATGGCATGATC 59.908 38.462 0.00 0.00 0.00 2.92
1691 5866 5.935789 CCTTCTTCAAACAAAATGGCATGAT 59.064 36.000 0.00 0.00 0.00 2.45
1692 5867 5.299148 CCTTCTTCAAACAAAATGGCATGA 58.701 37.500 0.00 0.00 0.00 3.07
1693 5868 4.083696 GCCTTCTTCAAACAAAATGGCATG 60.084 41.667 0.00 0.00 37.91 4.06
1694 5869 4.067192 GCCTTCTTCAAACAAAATGGCAT 58.933 39.130 0.00 0.00 37.91 4.40
1695 5870 3.118482 TGCCTTCTTCAAACAAAATGGCA 60.118 39.130 0.00 0.00 44.41 4.92
1696 5871 3.465871 TGCCTTCTTCAAACAAAATGGC 58.534 40.909 0.00 0.00 38.42 4.40
1697 5872 5.358922 TCTTGCCTTCTTCAAACAAAATGG 58.641 37.500 0.00 0.00 0.00 3.16
1698 5873 6.313411 TGTTCTTGCCTTCTTCAAACAAAATG 59.687 34.615 0.00 0.00 0.00 2.32
1699 5874 6.405538 TGTTCTTGCCTTCTTCAAACAAAAT 58.594 32.000 0.00 0.00 0.00 1.82
1700 5875 5.788450 TGTTCTTGCCTTCTTCAAACAAAA 58.212 33.333 0.00 0.00 0.00 2.44
1701 5876 5.398603 TGTTCTTGCCTTCTTCAAACAAA 57.601 34.783 0.00 0.00 0.00 2.83
1702 5877 4.142182 CCTGTTCTTGCCTTCTTCAAACAA 60.142 41.667 0.00 0.00 0.00 2.83
1703 5878 3.381272 CCTGTTCTTGCCTTCTTCAAACA 59.619 43.478 0.00 0.00 0.00 2.83
1704 5879 3.632145 TCCTGTTCTTGCCTTCTTCAAAC 59.368 43.478 0.00 0.00 0.00 2.93
1705 5880 3.632145 GTCCTGTTCTTGCCTTCTTCAAA 59.368 43.478 0.00 0.00 0.00 2.69
1706 5881 3.214328 GTCCTGTTCTTGCCTTCTTCAA 58.786 45.455 0.00 0.00 0.00 2.69
1707 5882 2.487265 GGTCCTGTTCTTGCCTTCTTCA 60.487 50.000 0.00 0.00 0.00 3.02
1708 5883 2.155279 GGTCCTGTTCTTGCCTTCTTC 58.845 52.381 0.00 0.00 0.00 2.87
1709 5884 1.202940 GGGTCCTGTTCTTGCCTTCTT 60.203 52.381 0.00 0.00 0.00 2.52
1712 5887 0.111253 CTGGGTCCTGTTCTTGCCTT 59.889 55.000 0.00 0.00 0.00 4.35
1727 5902 1.251251 CTTCTTGTGCTTTCCCTGGG 58.749 55.000 6.33 6.33 0.00 4.45
1737 5912 0.099436 CCAATAGCGCCTTCTTGTGC 59.901 55.000 2.29 0.00 42.02 4.57
1751 5926 5.378230 AAGATCACTTGAGCCATCCAATA 57.622 39.130 0.00 0.00 34.80 1.90
1827 6002 2.936498 CCGTCCAGTCATACATGTTTCC 59.064 50.000 2.30 0.00 0.00 3.13
1841 6016 2.045926 CAAAGCCTCCCCGTCCAG 60.046 66.667 0.00 0.00 0.00 3.86
2353 12269 6.661304 AAACATTTCCAGCTTTGAGATCTT 57.339 33.333 0.00 0.00 0.00 2.40
2548 12482 5.472148 TGCTTGATTATTTGACTTGCAAGG 58.528 37.500 29.18 12.28 37.87 3.61
2659 12595 4.113354 GCTTCTCTTCATACCGGTTACAG 58.887 47.826 15.04 4.25 0.00 2.74
2701 12640 3.150767 ACGTAAGCTATGAGGCTAGGAG 58.849 50.000 0.00 0.00 42.24 3.69
2730 12669 4.058721 AGTTGGGAACTTGAAAACATGC 57.941 40.909 0.00 0.00 39.04 4.06
3024 12980 2.098293 CAAAGTATGCAGGCCGGTC 58.902 57.895 0.00 0.00 0.00 4.79
3101 13057 7.255070 CGACCCTCTATACCAGTAAGAGTTAAC 60.255 44.444 0.00 0.00 35.93 2.01
3130 13086 9.016438 ACACATATAAAAGTACCGAACCATTTT 57.984 29.630 0.00 0.00 0.00 1.82
3160 13116 3.247442 GACGTAATGTCCAACACATCGA 58.753 45.455 0.00 0.00 45.77 3.59
3174 13130 4.082571 ACCACTAGCTACAAACGACGTAAT 60.083 41.667 0.00 0.00 0.00 1.89
3181 13151 2.993899 CCTTCACCACTAGCTACAAACG 59.006 50.000 0.00 0.00 0.00 3.60
3274 13245 4.210093 ACCACCACGACGACGCAA 62.210 61.111 7.30 0.00 43.96 4.85
3276 13247 4.634133 TCACCACCACGACGACGC 62.634 66.667 7.30 0.00 43.96 5.19
3277 13248 1.146957 TTTTCACCACCACGACGACG 61.147 55.000 5.58 5.58 45.75 5.12
3340 13312 8.627487 TGTTGTATTTTGTGTTTGATGTTCTC 57.373 30.769 0.00 0.00 0.00 2.87
3432 13543 3.630769 GCAGACACACCATCATCATCAAT 59.369 43.478 0.00 0.00 0.00 2.57
3436 13547 1.282738 TGGCAGACACACCATCATCAT 59.717 47.619 0.00 0.00 0.00 2.45
3450 13561 2.290514 GCCTATATTGCAGGATGGCAGA 60.291 50.000 12.68 0.00 45.88 4.26
3511 13622 6.259829 GTGTGGGTATCTTTTTGCAAAATTGT 59.740 34.615 24.39 14.99 0.00 2.71
3559 13670 0.618968 AGGATGAACGAGGGAAGGCT 60.619 55.000 0.00 0.00 0.00 4.58
3624 13737 5.090121 AGCAAGATGTCTGTGTGTTGCAC 62.090 47.826 9.39 0.00 44.32 4.57
3631 13744 7.411486 ACTATAACTAGCAAGATGTCTGTGT 57.589 36.000 0.00 0.00 0.00 3.72
3664 13777 4.984161 CACGATTCACCAAGCAAAGAAAAT 59.016 37.500 0.00 0.00 0.00 1.82
3669 13782 3.558505 CTTCACGATTCACCAAGCAAAG 58.441 45.455 0.00 0.00 0.00 2.77
3748 13949 1.742750 GCCGTGTAATCCCACTTCCTC 60.743 57.143 0.00 0.00 33.07 3.71
3750 13951 0.746923 GGCCGTGTAATCCCACTTCC 60.747 60.000 0.00 0.00 33.07 3.46
3794 13995 1.409802 CCTCTTAGGTGTCTCGCCCTA 60.410 57.143 0.00 0.00 33.99 3.53
3795 13996 0.684805 CCTCTTAGGTGTCTCGCCCT 60.685 60.000 0.00 0.00 33.99 5.19
3809 14014 1.354368 TCCGGAGAAATTTGGCCTCTT 59.646 47.619 0.00 0.00 0.00 2.85
3821 14026 4.261701 GCCTCTAGCTCCGGAGAA 57.738 61.111 35.69 20.22 38.99 2.87
3870 14075 0.036105 TCCACAGCAGCATCGACATT 60.036 50.000 0.00 0.00 0.00 2.71
3881 14086 0.835971 TACTTGCCCTCTCCACAGCA 60.836 55.000 0.00 0.00 0.00 4.41
3886 14091 0.984230 CCTGTTACTTGCCCTCTCCA 59.016 55.000 0.00 0.00 0.00 3.86
3888 14093 1.066071 GGACCTGTTACTTGCCCTCTC 60.066 57.143 0.00 0.00 0.00 3.20
3922 16205 4.924305 TGGTATCGGGTGAACATACTAC 57.076 45.455 0.00 0.00 0.00 2.73
3923 16206 5.141910 TCATGGTATCGGGTGAACATACTA 58.858 41.667 0.00 0.00 0.00 1.82
3929 16212 2.561569 CCTTCATGGTATCGGGTGAAC 58.438 52.381 0.00 0.00 0.00 3.18
3942 16225 7.490725 TGTTTGACATTTGTTTACACCTTCATG 59.509 33.333 0.00 0.00 0.00 3.07
3943 16226 7.551585 TGTTTGACATTTGTTTACACCTTCAT 58.448 30.769 0.00 0.00 0.00 2.57
3951 16234 8.871686 ATTTCTCCTGTTTGACATTTGTTTAC 57.128 30.769 0.00 0.00 0.00 2.01
3953 16236 7.785033 AGATTTCTCCTGTTTGACATTTGTTT 58.215 30.769 0.00 0.00 0.00 2.83
3956 16239 9.185192 GTTTAGATTTCTCCTGTTTGACATTTG 57.815 33.333 0.00 0.00 0.00 2.32
4028 16860 0.313672 TTTCTCCCGTTGCAATGCAC 59.686 50.000 7.72 2.39 38.71 4.57
4030 16862 2.147436 TTTTTCTCCCGTTGCAATGC 57.853 45.000 13.42 0.00 0.00 3.56
4058 16890 3.047857 TGATCATGGCCATTGGAGACTA 58.952 45.455 17.92 0.16 0.00 2.59
4060 16892 2.158711 TCTGATCATGGCCATTGGAGAC 60.159 50.000 17.92 10.25 0.00 3.36
4069 16901 2.802057 GCAGCAAAATCTGATCATGGCC 60.802 50.000 0.00 0.00 36.19 5.36
4093 16925 5.677567 TGTGAGTGATAGTGTATCTCGGTA 58.322 41.667 0.00 0.00 36.17 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.