Multiple sequence alignment - TraesCS7A01G151300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G151300 chr7A 100.000 3774 0 0 1 3774 105316893 105313120 0.000000e+00 6970.0
1 TraesCS7A01G151300 chr7A 100.000 3750 0 0 4004 7753 105312890 105309141 0.000000e+00 6926.0
2 TraesCS7A01G151300 chr7A 93.715 716 34 5 1 709 692508175 692508886 0.000000e+00 1062.0
3 TraesCS7A01G151300 chr7A 93.108 711 42 3 1 706 671820069 671820777 0.000000e+00 1035.0
4 TraesCS7A01G151300 chr7A 92.857 714 42 8 1 709 39327714 39327005 0.000000e+00 1027.0
5 TraesCS7A01G151300 chr7A 92.386 197 15 0 4643 4839 252171918 252172114 1.650000e-71 281.0
6 TraesCS7A01G151300 chr7A 89.119 193 19 2 4838 5029 424927667 424927476 1.010000e-58 239.0
7 TraesCS7A01G151300 chr7A 99.187 123 1 0 4213 4335 140763951 140764073 1.010000e-53 222.0
8 TraesCS7A01G151300 chr7A 99.187 123 1 0 4213 4335 141052842 141052964 1.010000e-53 222.0
9 TraesCS7A01G151300 chr7A 99.187 123 1 0 4213 4335 141307629 141307751 1.010000e-53 222.0
10 TraesCS7A01G151300 chr7A 99.187 123 1 0 4213 4335 141647620 141647742 1.010000e-53 222.0
11 TraesCS7A01G151300 chr7A 99.187 123 1 0 4213 4335 141898801 141898923 1.010000e-53 222.0
12 TraesCS7A01G151300 chr7A 99.187 123 1 0 4213 4335 222942450 222942328 1.010000e-53 222.0
13 TraesCS7A01G151300 chr7A 99.187 123 1 0 4213 4335 626604970 626605092 1.010000e-53 222.0
14 TraesCS7A01G151300 chr7A 96.241 133 4 1 4212 4343 245537034 245537166 4.710000e-52 217.0
15 TraesCS7A01G151300 chr7A 98.901 91 0 1 3685 3774 105312890 105312800 2.240000e-35 161.0
16 TraesCS7A01G151300 chr7A 98.901 91 0 1 4004 4094 105313209 105313120 2.240000e-35 161.0
17 TraesCS7A01G151300 chr7D 90.306 2383 171 29 706 3045 101586040 101583675 0.000000e+00 3066.0
18 TraesCS7A01G151300 chr7D 95.314 1878 52 12 4999 6874 101582190 101580347 0.000000e+00 2948.0
19 TraesCS7A01G151300 chr7D 91.304 621 35 9 3157 3774 101583679 101583075 0.000000e+00 830.0
20 TraesCS7A01G151300 chr7D 95.661 507 17 4 4337 4839 101582692 101582187 0.000000e+00 809.0
21 TraesCS7A01G151300 chr7D 89.722 467 26 7 7001 7451 101578135 101577675 1.880000e-160 577.0
22 TraesCS7A01G151300 chr7D 93.413 167 11 0 4838 5004 507853760 507853594 1.670000e-61 248.0
23 TraesCS7A01G151300 chr7D 91.209 182 12 4 4827 5007 448935986 448935808 2.160000e-60 244.0
24 TraesCS7A01G151300 chr7D 94.737 152 7 1 7602 7753 101577002 101576852 1.300000e-57 235.0
25 TraesCS7A01G151300 chr7D 93.103 145 7 2 4029 4170 101583142 101582998 7.880000e-50 209.0
26 TraesCS7A01G151300 chr7D 100.000 39 0 0 6967 7005 101580344 101580306 1.080000e-08 73.1
27 TraesCS7A01G151300 chr7B 92.320 1849 87 25 4999 6841 58729135 58727336 0.000000e+00 2577.0
28 TraesCS7A01G151300 chr7B 87.278 2248 169 47 689 2860 58734115 58731909 0.000000e+00 2459.0
29 TraesCS7A01G151300 chr7B 96.370 551 15 4 3157 3704 58730765 58730217 0.000000e+00 902.0
30 TraesCS7A01G151300 chr7B 95.446 505 21 1 4337 4839 58729759 58729255 0.000000e+00 804.0
31 TraesCS7A01G151300 chr7B 93.500 200 12 1 2846 3045 58730959 58730761 5.880000e-76 296.0
32 TraesCS7A01G151300 chr7B 93.452 168 11 0 4838 5005 427701930 427701763 4.640000e-62 250.0
33 TraesCS7A01G151300 chr7B 88.832 197 12 3 4643 4839 213451647 213451833 4.680000e-57 233.0
34 TraesCS7A01G151300 chr7B 98.374 123 2 0 4213 4335 537460871 537460993 4.710000e-52 217.0
35 TraesCS7A01G151300 chr7B 92.105 152 11 1 4064 4214 58729912 58729761 6.090000e-51 213.0
36 TraesCS7A01G151300 chr7B 91.391 151 7 3 7058 7207 58726358 58726213 1.320000e-47 202.0
37 TraesCS7A01G151300 chr7B 94.656 131 6 1 3041 3170 81424987 81425117 1.320000e-47 202.0
38 TraesCS7A01G151300 chr7B 95.181 83 4 0 7040 7122 58726440 58726358 1.760000e-26 132.0
39 TraesCS7A01G151300 chr7B 89.583 96 9 1 7345 7440 58725885 58725791 3.800000e-23 121.0
40 TraesCS7A01G151300 chr2A 93.863 717 34 4 1 709 750533997 750534711 0.000000e+00 1072.0
41 TraesCS7A01G151300 chr2A 96.748 123 4 0 3041 3163 78845691 78845569 1.020000e-48 206.0
42 TraesCS7A01G151300 chr2A 94.615 130 6 1 3033 3162 606523678 606523806 4.740000e-47 200.0
43 TraesCS7A01G151300 chr1A 93.602 719 34 7 1 712 107531969 107531256 0.000000e+00 1062.0
44 TraesCS7A01G151300 chr1A 92.837 712 44 3 1 708 459320575 459319867 0.000000e+00 1026.0
45 TraesCS7A01G151300 chr1A 96.800 125 4 0 4211 4335 24469138 24469014 7.880000e-50 209.0
46 TraesCS7A01G151300 chr1A 94.118 136 7 1 4212 4347 305333367 305333501 1.020000e-48 206.0
47 TraesCS7A01G151300 chr1A 96.667 120 4 0 3041 3160 208212531 208212650 4.740000e-47 200.0
48 TraesCS7A01G151300 chr1A 93.600 125 6 1 3043 3167 301777956 301777834 1.330000e-42 185.0
49 TraesCS7A01G151300 chr5A 93.689 713 35 5 1 708 671200728 671200021 0.000000e+00 1059.0
50 TraesCS7A01G151300 chr5A 93.137 714 41 4 1 708 502600769 502601480 0.000000e+00 1040.0
51 TraesCS7A01G151300 chr5A 93.452 168 11 0 4838 5005 435637329 435637162 4.640000e-62 250.0
52 TraesCS7A01G151300 chr5A 99.187 123 1 0 4213 4335 279670548 279670426 1.010000e-53 222.0
53 TraesCS7A01G151300 chr5A 98.374 123 2 0 4213 4335 64544590 64544468 4.710000e-52 217.0
54 TraesCS7A01G151300 chr5A 86.667 120 12 3 1680 1795 173527522 173527641 6.310000e-26 130.0
55 TraesCS7A01G151300 chr4A 93.662 710 38 3 1 706 685313084 685313790 0.000000e+00 1055.0
56 TraesCS7A01G151300 chr6D 94.118 170 8 2 4835 5003 293177407 293177239 2.780000e-64 257.0
57 TraesCS7A01G151300 chr6D 93.976 166 10 0 4837 5002 243032889 243033054 1.290000e-62 252.0
58 TraesCS7A01G151300 chr6D 97.561 123 3 0 4213 4335 379557154 379557276 2.190000e-50 211.0
59 TraesCS7A01G151300 chr6D 96.748 123 4 0 4213 4335 379534098 379534220 1.020000e-48 206.0
60 TraesCS7A01G151300 chr6D 92.683 82 3 1 1168 1249 367177586 367177664 1.770000e-21 115.0
61 TraesCS7A01G151300 chr6D 87.755 98 8 2 1168 1265 21515360 21515453 2.290000e-20 111.0
62 TraesCS7A01G151300 chr3A 94.048 168 10 0 4838 5005 649828473 649828306 9.980000e-64 255.0
63 TraesCS7A01G151300 chr1D 93.529 170 9 2 4833 5002 486393365 486393532 1.290000e-62 252.0
64 TraesCS7A01G151300 chr1D 92.899 169 12 0 4834 5002 121437159 121437327 6.010000e-61 246.0
65 TraesCS7A01G151300 chr1D 92.899 169 11 1 4838 5006 180851738 180851571 2.160000e-60 244.0
66 TraesCS7A01G151300 chr1D 92.398 171 12 1 4835 5005 360358390 360358221 7.770000e-60 243.0
67 TraesCS7A01G151300 chr1D 91.716 169 14 0 4834 5002 48888545 48888713 1.300000e-57 235.0
68 TraesCS7A01G151300 chr1D 91.329 173 13 2 4835 5006 128526226 128526397 1.300000e-57 235.0
69 TraesCS7A01G151300 chr1D 97.561 123 3 0 4213 4335 392951439 392951561 2.190000e-50 211.0
70 TraesCS7A01G151300 chr1D 96.774 124 4 0 4212 4335 436108213 436108090 2.840000e-49 207.0
71 TraesCS7A01G151300 chr1D 95.968 124 5 0 4212 4335 178459511 178459634 1.320000e-47 202.0
72 TraesCS7A01G151300 chr1D 95.935 123 5 0 4212 4334 330555402 330555524 4.740000e-47 200.0
73 TraesCS7A01G151300 chr1D 96.639 119 4 0 4216 4334 345741180 345741062 1.710000e-46 198.0
74 TraesCS7A01G151300 chr1D 96.610 118 4 0 3043 3160 116548340 116548457 6.140000e-46 196.0
75 TraesCS7A01G151300 chr1D 91.608 143 10 2 4213 4353 484166909 484167051 6.140000e-46 196.0
76 TraesCS7A01G151300 chr1D 94.444 126 7 0 3043 3168 20996004 20995879 2.210000e-45 195.0
77 TraesCS7A01G151300 chr1D 92.647 136 6 4 3044 3175 484565052 484564917 7.940000e-45 193.0
78 TraesCS7A01G151300 chr1D 94.355 124 7 0 3041 3164 308456537 308456414 2.860000e-44 191.0
79 TraesCS7A01G151300 chr1D 95.000 120 6 0 3041 3160 164437582 164437701 1.030000e-43 189.0
80 TraesCS7A01G151300 chr1D 91.912 136 9 2 3034 3167 470620836 470620971 1.030000e-43 189.0
81 TraesCS7A01G151300 chr1D 94.167 120 7 0 3041 3160 153773194 153773075 4.780000e-42 183.0
82 TraesCS7A01G151300 chr1D 94.167 120 7 0 3041 3160 182046803 182046684 4.780000e-42 183.0
83 TraesCS7A01G151300 chr1D 92.913 127 8 1 3043 3168 458432532 458432658 4.780000e-42 183.0
84 TraesCS7A01G151300 chr1D 93.388 121 6 1 3043 3161 307235408 307235528 2.220000e-40 178.0
85 TraesCS7A01G151300 chrUn 93.452 168 11 0 4838 5005 382102445 382102278 4.640000e-62 250.0
86 TraesCS7A01G151300 chrUn 91.525 177 14 1 4835 5010 250801059 250800883 7.770000e-60 243.0
87 TraesCS7A01G151300 chrUn 91.954 174 13 1 4835 5007 258351099 258351272 7.770000e-60 243.0
88 TraesCS7A01G151300 chrUn 91.525 177 14 1 4835 5010 366086326 366086150 7.770000e-60 243.0
89 TraesCS7A01G151300 chrUn 90.751 173 16 0 4838 5010 349616425 349616253 1.680000e-56 231.0
90 TraesCS7A01G151300 chrUn 90.751 173 15 1 4834 5006 67351180 67351009 6.050000e-56 230.0
91 TraesCS7A01G151300 chrUn 90.751 173 15 1 4834 5006 271436604 271436775 6.050000e-56 230.0
92 TraesCS7A01G151300 chrUn 91.515 165 14 0 4838 5002 8823163 8823327 2.180000e-55 228.0
93 TraesCS7A01G151300 chrUn 90.964 166 14 1 4838 5003 74544607 74544771 1.010000e-53 222.0
94 TraesCS7A01G151300 chrUn 90.909 165 15 0 4838 5002 108810997 108810833 1.010000e-53 222.0
95 TraesCS7A01G151300 chrUn 90.964 166 14 1 4838 5003 115400729 115400893 1.010000e-53 222.0
96 TraesCS7A01G151300 chrUn 90.909 165 15 0 4838 5002 358753915 358754079 1.010000e-53 222.0
97 TraesCS7A01G151300 chrUn 96.774 124 4 0 4212 4335 100201290 100201167 2.840000e-49 207.0
98 TraesCS7A01G151300 chrUn 95.968 124 5 0 4212 4335 263456492 263456369 1.320000e-47 202.0
99 TraesCS7A01G151300 chrUn 92.857 140 7 3 4213 4350 322720536 322720398 4.740000e-47 200.0
100 TraesCS7A01G151300 chrUn 95.276 127 5 1 4209 4335 404804048 404803923 4.740000e-47 200.0
101 TraesCS7A01G151300 chrUn 95.161 124 6 0 4212 4335 16890453 16890330 6.140000e-46 196.0
102 TraesCS7A01G151300 chrUn 94.355 124 7 0 4212 4335 16475963 16475840 2.860000e-44 191.0
103 TraesCS7A01G151300 chrUn 94.355 124 7 0 4212 4335 17025386 17025263 2.860000e-44 191.0
104 TraesCS7A01G151300 chrUn 94.355 124 7 0 4212 4335 17027619 17027496 2.860000e-44 191.0
105 TraesCS7A01G151300 chrUn 94.355 124 7 0 4212 4335 52994565 52994442 2.860000e-44 191.0
106 TraesCS7A01G151300 chrUn 94.355 124 7 0 4212 4335 292131060 292131183 2.860000e-44 191.0
107 TraesCS7A01G151300 chrUn 93.548 124 7 1 3043 3166 99244824 99244946 4.780000e-42 183.0
108 TraesCS7A01G151300 chrUn 94.068 118 7 0 3043 3160 112678693 112678810 6.180000e-41 180.0
109 TraesCS7A01G151300 chrUn 94.643 112 6 0 3049 3160 31381286 31381175 2.880000e-39 174.0
110 TraesCS7A01G151300 chrUn 92.437 119 9 0 3043 3161 49634089 49633971 3.720000e-38 171.0
111 TraesCS7A01G151300 chrUn 91.597 119 10 0 3042 3160 124590828 124590710 1.730000e-36 165.0
112 TraesCS7A01G151300 chrUn 91.525 118 10 0 3043 3160 321243257 321243140 6.220000e-36 163.0
113 TraesCS7A01G151300 chrUn 91.525 118 10 0 3043 3160 322420731 322420848 6.220000e-36 163.0
114 TraesCS7A01G151300 chrUn 90.756 119 11 0 3042 3160 371455487 371455369 8.050000e-35 159.0
115 TraesCS7A01G151300 chrUn 88.525 122 13 1 3041 3161 108929393 108929514 6.270000e-31 147.0
116 TraesCS7A01G151300 chr5D 92.941 170 12 0 4838 5007 241019684 241019853 1.670000e-61 248.0
117 TraesCS7A01G151300 chr5D 96.154 130 5 0 4212 4341 460650657 460650528 6.090000e-51 213.0
118 TraesCS7A01G151300 chr5D 97.561 123 3 0 4213 4335 460652760 460652882 2.190000e-50 211.0
119 TraesCS7A01G151300 chr5D 97.458 118 3 0 3043 3160 118840568 118840451 1.320000e-47 202.0
120 TraesCS7A01G151300 chr5D 93.284 134 9 0 4212 4345 455607928 455608061 1.710000e-46 198.0
121 TraesCS7A01G151300 chr5D 90.604 149 12 2 3021 3168 558380253 558380106 6.140000e-46 196.0
122 TraesCS7A01G151300 chr5D 90.714 140 12 1 3043 3182 492723288 492723150 1.330000e-42 185.0
123 TraesCS7A01G151300 chr3B 91.667 180 13 2 4827 5005 571539901 571540079 1.670000e-61 248.0
124 TraesCS7A01G151300 chr6B 90.476 189 15 3 4835 5022 17806237 17806051 6.010000e-61 246.0
125 TraesCS7A01G151300 chr4D 92.899 169 12 0 4834 5002 252819718 252819886 6.010000e-61 246.0
126 TraesCS7A01G151300 chr4D 92.727 165 12 0 4838 5002 122257054 122256890 1.010000e-58 239.0
127 TraesCS7A01G151300 chr4D 96.000 125 3 2 4212 4335 298539187 298539064 1.320000e-47 202.0
128 TraesCS7A01G151300 chr4D 96.639 119 4 0 3043 3161 367720887 367720769 1.710000e-46 198.0
129 TraesCS7A01G151300 chr4D 93.798 129 8 0 3034 3162 386751217 386751345 2.210000e-45 195.0
130 TraesCS7A01G151300 chr4D 95.798 119 5 0 3042 3160 55352440 55352558 7.940000e-45 193.0
131 TraesCS7A01G151300 chr4D 94.355 124 6 1 3038 3160 503358038 503357915 1.030000e-43 189.0
132 TraesCS7A01G151300 chr4D 93.023 129 8 1 3029 3157 51798188 51798061 3.690000e-43 187.0
133 TraesCS7A01G151300 chr4D 85.816 141 14 4 1660 1795 210025015 210025154 2.250000e-30 145.0
134 TraesCS7A01G151300 chr1B 93.452 168 7 4 4837 5002 423590760 423590925 6.010000e-61 246.0
135 TraesCS7A01G151300 chr1B 96.774 124 4 0 4212 4335 277456298 277456421 2.840000e-49 207.0
136 TraesCS7A01G151300 chr1B 91.892 148 9 3 4202 4346 623397423 623397570 3.670000e-48 204.0
137 TraesCS7A01G151300 chr1B 95.122 123 6 0 4213 4335 650050105 650049983 2.210000e-45 195.0
138 TraesCS7A01G151300 chr1B 91.912 136 11 0 3025 3160 334306813 334306678 2.860000e-44 191.0
139 TraesCS7A01G151300 chr4B 90.960 177 16 0 4831 5007 488893115 488893291 1.010000e-58 239.0
140 TraesCS7A01G151300 chr4B 94.776 134 6 1 4212 4344 546272569 546272702 2.840000e-49 207.0
141 TraesCS7A01G151300 chr5B 98.374 123 2 0 4213 4335 290816553 290816675 4.710000e-52 217.0
142 TraesCS7A01G151300 chr5B 98.374 123 2 0 4213 4335 658641938 658641816 4.710000e-52 217.0
143 TraesCS7A01G151300 chr5B 90.000 160 12 4 4200 4357 533628715 533628872 3.670000e-48 204.0
144 TraesCS7A01G151300 chr2B 96.800 125 4 0 3043 3167 643184735 643184611 7.880000e-50 209.0
145 TraesCS7A01G151300 chr2B 93.617 141 7 2 4202 4340 794689073 794688933 7.880000e-50 209.0
146 TraesCS7A01G151300 chr2B 93.617 141 7 2 4202 4340 794797974 794797834 7.880000e-50 209.0
147 TraesCS7A01G151300 chr2D 94.203 138 4 4 4213 4347 445188720 445188584 2.840000e-49 207.0
148 TraesCS7A01G151300 chr2D 97.479 119 3 0 3042 3160 12692239 12692357 3.670000e-48 204.0
149 TraesCS7A01G151300 chr2D 94.074 135 5 3 3042 3176 294973455 294973586 1.320000e-47 202.0
150 TraesCS7A01G151300 chr6A 96.748 123 4 0 4213 4335 6859971 6860093 1.020000e-48 206.0
151 TraesCS7A01G151300 chr6A 95.200 125 6 0 3043 3167 147303660 147303784 1.710000e-46 198.0
152 TraesCS7A01G151300 chr6A 89.888 89 6 1 1176 1264 47268926 47268841 2.290000e-20 111.0
153 TraesCS7A01G151300 chr3D 94.074 135 7 1 4201 4335 67064774 67064907 3.670000e-48 204.0
154 TraesCS7A01G151300 chr3D 91.096 146 11 2 4213 4357 448736599 448736455 6.140000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G151300 chr7A 105309141 105316893 7752 True 3554.500000 6970 99.450500 1 7753 4 chr7A.!!$R4 7752
1 TraesCS7A01G151300 chr7A 692508175 692508886 711 False 1062.000000 1062 93.715000 1 709 1 chr7A.!!$F10 708
2 TraesCS7A01G151300 chr7A 671820069 671820777 708 False 1035.000000 1035 93.108000 1 706 1 chr7A.!!$F9 705
3 TraesCS7A01G151300 chr7A 39327005 39327714 709 True 1027.000000 1027 92.857000 1 709 1 chr7A.!!$R1 708
4 TraesCS7A01G151300 chr7D 101576852 101586040 9188 True 1093.387500 3066 93.768375 706 7753 8 chr7D.!!$R3 7047
5 TraesCS7A01G151300 chr7B 58725791 58734115 8324 True 856.222222 2577 92.574889 689 7440 9 chr7B.!!$R2 6751
6 TraesCS7A01G151300 chr2A 750533997 750534711 714 False 1072.000000 1072 93.863000 1 709 1 chr2A.!!$F2 708
7 TraesCS7A01G151300 chr1A 107531256 107531969 713 True 1062.000000 1062 93.602000 1 712 1 chr1A.!!$R2 711
8 TraesCS7A01G151300 chr1A 459319867 459320575 708 True 1026.000000 1026 92.837000 1 708 1 chr1A.!!$R4 707
9 TraesCS7A01G151300 chr5A 671200021 671200728 707 True 1059.000000 1059 93.689000 1 708 1 chr5A.!!$R4 707
10 TraesCS7A01G151300 chr5A 502600769 502601480 711 False 1040.000000 1040 93.137000 1 708 1 chr5A.!!$F2 707
11 TraesCS7A01G151300 chr4A 685313084 685313790 706 False 1055.000000 1055 93.662000 1 706 1 chr4A.!!$F1 705

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
925 964 0.393808 CCACTTTATCCACACCCGGG 60.394 60.0 22.25 22.25 0.00 5.73 F
1747 1810 0.179020 TCATCGGGGTTGATGGATGC 60.179 55.0 4.11 0.00 44.68 3.91 F
3083 4144 0.110486 TTGTCCCAAGCTTGTCCCTC 59.890 55.0 24.35 10.65 0.00 4.30 F
3150 4211 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.0 0.00 0.00 0.00 4.79 F
4231 5557 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.00 44.66 2.17 F
4232 5558 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.00 44.66 1.40 F
4234 5560 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
6002 7463 0.036022 GGAGTCAGCTGAAAGTGCCT 59.964 55.0 20.19 10.20 35.30 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1871 0.383231 AGCCATTCAATAAGCGCTGC 59.617 50.000 12.58 6.57 0.00 5.25 R
3143 4204 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30 R
4215 5541 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4318 5644 0.618393 AACCCCTCCGTCCGGAAATA 60.618 55.000 5.23 0.00 44.66 1.40 R
5899 7360 0.337082 TACAGCACTAGCCCCTGGTA 59.663 55.000 9.00 0.00 43.56 3.25 R
6182 7643 0.460811 GTGCCATCAGTCGCTCATCA 60.461 55.000 0.00 0.00 0.00 3.07 R
6257 7718 2.112297 TCGTTTGGCTCGGGCTTT 59.888 55.556 7.48 0.00 38.73 3.51 R
7715 12919 0.182061 ATATGTGCACAGCTCAGGGG 59.818 55.000 25.84 0.00 35.55 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.467226 GATCCTTCACGCCCCGGA 61.467 66.667 0.73 0.00 0.00 5.14
197 202 1.134220 GCGAGAGAGAGGAGAAGGAGA 60.134 57.143 0.00 0.00 0.00 3.71
227 232 1.452289 CGAGAGAGAGGCGAGGGAA 60.452 63.158 0.00 0.00 0.00 3.97
490 495 1.407162 CCGAGAAGAGGGTAGAGTCGT 60.407 57.143 0.00 0.00 0.00 4.34
583 590 3.782443 GGTTCGGCCTGGATCCGT 61.782 66.667 7.39 0.00 46.49 4.69
630 637 0.474184 AAAATCGCGATCCTGGGGAT 59.526 50.000 23.92 0.04 46.28 3.85
920 959 1.029947 CCCCGCCACTTTATCCACAC 61.030 60.000 0.00 0.00 0.00 3.82
923 962 1.366111 CGCCACTTTATCCACACCCG 61.366 60.000 0.00 0.00 0.00 5.28
924 963 1.029947 GCCACTTTATCCACACCCGG 61.030 60.000 0.00 0.00 0.00 5.73
925 964 0.393808 CCACTTTATCCACACCCGGG 60.394 60.000 22.25 22.25 0.00 5.73
926 965 1.029947 CACTTTATCCACACCCGGGC 61.030 60.000 24.08 0.00 0.00 6.13
1053 1092 4.702274 CCCCCAAAGGCCACCCAG 62.702 72.222 5.01 0.00 0.00 4.45
1146 1197 3.749064 CCGCCGATCCGATCCGAT 61.749 66.667 8.19 0.00 0.00 4.18
1147 1198 2.258591 CGCCGATCCGATCCGATT 59.741 61.111 2.69 0.00 0.00 3.34
1152 1203 0.517755 CGATCCGATCCGATTCGACT 59.482 55.000 7.83 0.00 41.62 4.18
1155 1206 0.531311 TCCGATCCGATTCGACTCGA 60.531 55.000 24.66 12.15 41.62 4.04
1158 1209 0.661552 GATCCGATTCGACTCGACCA 59.338 55.000 24.66 9.77 41.12 4.02
1473 1527 2.360852 CTGGGGTTGCTCCTGCTG 60.361 66.667 0.00 0.00 40.48 4.41
1531 1585 2.280628 GGTTTTCTGTGCTATCGGGAG 58.719 52.381 0.00 0.00 0.00 4.30
1575 1631 3.619729 GTTACGCGTTTGATTTTGACCA 58.380 40.909 20.78 0.00 0.00 4.02
1577 1633 2.928694 ACGCGTTTGATTTTGACCATC 58.071 42.857 5.58 0.00 0.00 3.51
1643 1700 2.870435 GCGTGGATTAACTCAGTGGTGT 60.870 50.000 0.00 0.00 0.00 4.16
1657 1714 2.639327 GGTGTGGATTGCAGTGGCC 61.639 63.158 0.00 0.00 40.13 5.36
1658 1715 1.902918 GTGTGGATTGCAGTGGCCA 60.903 57.895 0.00 0.00 40.13 5.36
1675 1733 2.216898 GCCAAGCTGCTGTTATAGAGG 58.783 52.381 1.35 0.00 0.00 3.69
1680 1741 5.128919 CAAGCTGCTGTTATAGAGGGATTT 58.871 41.667 1.35 0.00 0.00 2.17
1714 1777 2.790433 ACAATGGGCATTCACGTTAGT 58.210 42.857 0.00 0.00 0.00 2.24
1720 1783 4.776349 TGGGCATTCACGTTAGTATTCAT 58.224 39.130 0.00 0.00 0.00 2.57
1732 1795 8.420945 CACGTTAGTATTCATTCTCGAATCATC 58.579 37.037 0.00 0.00 36.92 2.92
1741 1804 2.533266 CTCGAATCATCGGGGTTGAT 57.467 50.000 0.00 0.00 45.98 2.57
1746 1809 2.574006 ATCATCGGGGTTGATGGATG 57.426 50.000 4.11 0.00 44.68 3.51
1747 1810 0.179020 TCATCGGGGTTGATGGATGC 60.179 55.000 4.11 0.00 44.68 3.91
1778 1841 3.199946 TCCTGTTGATGTCCCTATGGTTC 59.800 47.826 0.00 0.00 0.00 3.62
1782 1845 3.035055 TGATGTCCCTATGGTTCGGTA 57.965 47.619 0.00 0.00 0.00 4.02
1784 1847 1.784358 TGTCCCTATGGTTCGGTAGG 58.216 55.000 0.00 0.00 37.74 3.18
1785 1848 1.007479 TGTCCCTATGGTTCGGTAGGT 59.993 52.381 0.00 0.00 36.54 3.08
1799 1862 2.689646 GGTAGGTTCACAGTCTGCTTC 58.310 52.381 0.00 0.00 0.00 3.86
1801 1864 3.510360 GGTAGGTTCACAGTCTGCTTCTA 59.490 47.826 0.00 0.00 0.00 2.10
1802 1865 3.951775 AGGTTCACAGTCTGCTTCTAG 57.048 47.619 0.00 0.00 0.00 2.43
1804 1867 2.300437 GGTTCACAGTCTGCTTCTAGGT 59.700 50.000 0.00 0.00 0.00 3.08
1806 1869 1.895798 TCACAGTCTGCTTCTAGGTGG 59.104 52.381 0.00 0.00 0.00 4.61
1807 1870 0.610687 ACAGTCTGCTTCTAGGTGGC 59.389 55.000 0.00 0.00 0.00 5.01
1808 1871 0.459237 CAGTCTGCTTCTAGGTGGCG 60.459 60.000 0.00 0.00 0.00 5.69
1809 1872 1.811679 GTCTGCTTCTAGGTGGCGC 60.812 63.158 0.00 0.00 0.00 6.53
1810 1873 2.265739 CTGCTTCTAGGTGGCGCA 59.734 61.111 10.83 0.00 0.00 6.09
1843 1906 0.179108 GGCTGGACGTGTATCTCCAC 60.179 60.000 0.00 0.00 32.84 4.02
1874 1937 3.368248 TGTAGAGGCTGGTATTACCGTT 58.632 45.455 8.32 0.00 42.58 4.44
1880 1943 3.008704 AGGCTGGTATTACCGTTTGACTT 59.991 43.478 8.32 0.00 42.58 3.01
1886 1949 1.886886 TTACCGTTTGACTTGGAGGC 58.113 50.000 0.00 0.00 0.00 4.70
1890 1953 1.515521 CGTTTGACTTGGAGGCCACC 61.516 60.000 13.09 13.09 30.78 4.61
1891 1954 0.178990 GTTTGACTTGGAGGCCACCT 60.179 55.000 20.77 0.00 36.03 4.00
1894 1957 1.222113 GACTTGGAGGCCACCTAGC 59.778 63.158 25.98 16.68 36.53 3.42
1952 2027 3.118702 TGACGGGTTGAGTCAACTTTGTA 60.119 43.478 29.89 14.76 44.56 2.41
1968 2043 4.217550 ACTTTGTATGGTTGGTCGATTTGG 59.782 41.667 0.00 0.00 0.00 3.28
1973 2048 1.683917 TGGTTGGTCGATTTGGTTTGG 59.316 47.619 0.00 0.00 0.00 3.28
2114 2207 3.733077 GCAGTTGCTGGTCAATTATCTGC 60.733 47.826 0.00 0.00 41.00 4.26
2136 2229 1.619654 AACATGCAAGGTGCTAAGCA 58.380 45.000 0.00 0.00 45.31 3.91
2166 2260 6.933521 CCTTCATAGAGTTTCATGGGATACAG 59.066 42.308 0.00 0.00 39.74 2.74
2186 2280 4.883083 CAGTAGGAGTTGCTACTGTTCAA 58.117 43.478 24.33 0.00 44.60 2.69
2196 2290 5.073311 TGCTACTGTTCAAGGTAGATGAC 57.927 43.478 0.00 0.00 38.03 3.06
2206 2300 1.202582 AGGTAGATGACGTCAGTGTGC 59.797 52.381 24.41 13.29 0.00 4.57
2212 2306 0.174617 TGACGTCAGTGTGCAAGTCA 59.825 50.000 15.76 0.00 36.43 3.41
2339 2435 6.137794 AGGTGTTTGTGATATCTAGTCTCG 57.862 41.667 3.98 0.00 0.00 4.04
2343 2439 7.133513 GTGTTTGTGATATCTAGTCTCGGTAG 58.866 42.308 3.98 0.00 0.00 3.18
2418 2516 8.728337 ATGATCGACATATTTGGGATTCATAG 57.272 34.615 0.00 0.00 37.46 2.23
2738 2836 6.799512 ACTTATTTATGACAATTCTGCCAGC 58.200 36.000 0.00 0.00 0.00 4.85
2745 2843 2.089980 ACAATTCTGCCAGCATCTGTC 58.910 47.619 0.00 0.00 0.00 3.51
2750 2848 2.156917 TCTGCCAGCATCTGTCTTTTG 58.843 47.619 0.00 0.00 0.00 2.44
2757 2855 4.154918 CCAGCATCTGTCTTTTGGTACTTC 59.845 45.833 0.00 0.00 0.00 3.01
2763 2861 4.341806 TCTGTCTTTTGGTACTTCGGTGTA 59.658 41.667 0.00 0.00 0.00 2.90
2785 2883 3.876309 TCTGTTTGGCCTTCTTTAGGT 57.124 42.857 3.32 0.00 46.61 3.08
2796 2894 4.082125 CCTTCTTTAGGTTTGATGCTGGT 58.918 43.478 0.00 0.00 39.39 4.00
2869 3930 7.609760 AAATTGTTGCTGTGACGATTCTATA 57.390 32.000 0.00 0.00 31.50 1.31
2899 3960 9.599322 CTGTAAAACTTTTAAGCTCATACACAG 57.401 33.333 0.00 0.00 0.00 3.66
3028 4089 7.831690 TGCCCAAAATTCAGTATCTGTATGTTA 59.168 33.333 0.00 0.00 32.61 2.41
3044 4105 9.529325 TCTGTATGTTAATGATTACTGCAGTAC 57.471 33.333 26.02 15.91 0.00 2.73
3045 4106 9.534565 CTGTATGTTAATGATTACTGCAGTACT 57.465 33.333 26.02 20.82 0.00 2.73
3046 4107 9.529325 TGTATGTTAATGATTACTGCAGTACTC 57.471 33.333 28.30 28.30 32.73 2.59
3047 4108 8.979574 GTATGTTAATGATTACTGCAGTACTCC 58.020 37.037 30.42 20.75 31.55 3.85
3048 4109 6.346096 TGTTAATGATTACTGCAGTACTCCC 58.654 40.000 30.42 18.83 31.55 4.30
3049 4110 6.156256 TGTTAATGATTACTGCAGTACTCCCT 59.844 38.462 30.42 22.45 31.55 4.20
3050 4111 4.946478 ATGATTACTGCAGTACTCCCTC 57.054 45.455 30.42 20.07 31.55 4.30
3051 4112 3.031736 TGATTACTGCAGTACTCCCTCC 58.968 50.000 30.42 14.46 31.55 4.30
3052 4113 1.471119 TTACTGCAGTACTCCCTCCG 58.529 55.000 26.02 0.00 0.00 4.63
3053 4114 0.330604 TACTGCAGTACTCCCTCCGT 59.669 55.000 22.67 0.00 0.00 4.69
3054 4115 0.542232 ACTGCAGTACTCCCTCCGTT 60.542 55.000 20.16 0.00 0.00 4.44
3055 4116 0.173708 CTGCAGTACTCCCTCCGTTC 59.826 60.000 5.25 0.00 0.00 3.95
3056 4117 1.139095 GCAGTACTCCCTCCGTTCG 59.861 63.158 0.00 0.00 0.00 3.95
3057 4118 1.310933 GCAGTACTCCCTCCGTTCGA 61.311 60.000 0.00 0.00 0.00 3.71
3058 4119 1.171308 CAGTACTCCCTCCGTTCGAA 58.829 55.000 0.00 0.00 0.00 3.71
3059 4120 1.542915 CAGTACTCCCTCCGTTCGAAA 59.457 52.381 0.00 0.00 0.00 3.46
3060 4121 2.029649 CAGTACTCCCTCCGTTCGAAAA 60.030 50.000 0.00 0.00 0.00 2.29
3061 4122 2.629617 AGTACTCCCTCCGTTCGAAAAA 59.370 45.455 0.00 0.00 0.00 1.94
3079 4140 3.801114 AAAACTTGTCCCAAGCTTGTC 57.199 42.857 24.35 14.49 0.00 3.18
3080 4141 1.692411 AACTTGTCCCAAGCTTGTCC 58.308 50.000 24.35 12.15 0.00 4.02
3081 4142 0.178990 ACTTGTCCCAAGCTTGTCCC 60.179 55.000 24.35 11.81 0.00 4.46
3082 4143 0.111253 CTTGTCCCAAGCTTGTCCCT 59.889 55.000 24.35 0.00 0.00 4.20
3083 4144 0.110486 TTGTCCCAAGCTTGTCCCTC 59.890 55.000 24.35 10.65 0.00 4.30
3084 4145 1.059584 TGTCCCAAGCTTGTCCCTCA 61.060 55.000 24.35 12.85 0.00 3.86
3085 4146 0.110486 GTCCCAAGCTTGTCCCTCAA 59.890 55.000 24.35 0.00 34.61 3.02
3086 4147 0.850100 TCCCAAGCTTGTCCCTCAAA 59.150 50.000 24.35 0.00 35.48 2.69
3087 4148 1.428912 TCCCAAGCTTGTCCCTCAAAT 59.571 47.619 24.35 0.00 35.48 2.32
3088 4149 1.547372 CCCAAGCTTGTCCCTCAAATG 59.453 52.381 24.35 5.47 35.48 2.32
3089 4150 1.547372 CCAAGCTTGTCCCTCAAATGG 59.453 52.381 24.35 1.81 35.48 3.16
3090 4151 2.517959 CAAGCTTGTCCCTCAAATGGA 58.482 47.619 18.65 0.00 35.48 3.41
3091 4152 3.094572 CAAGCTTGTCCCTCAAATGGAT 58.905 45.455 18.65 0.00 35.48 3.41
3092 4153 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3093 4154 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3094 4155 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3095 4156 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3096 4157 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3097 4158 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3098 4159 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3099 4160 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3100 4161 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3101 4162 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3102 4163 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3103 4164 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
3104 4165 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
3105 4166 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
3106 4167 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
3107 4168 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
3108 4169 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
3109 4170 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
3110 4171 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
3111 4172 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
3112 4173 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
3113 4174 5.995565 TGTATCTAGCACTAACTTGGTGT 57.004 39.130 7.08 0.00 37.07 4.16
3114 4175 6.354794 TGTATCTAGCACTAACTTGGTGTT 57.645 37.500 7.08 3.82 42.31 3.32
3115 4176 7.470935 TGTATCTAGCACTAACTTGGTGTTA 57.529 36.000 7.08 4.74 39.89 2.41
3129 4190 7.630242 ACTTGGTGTTAGATACATCCATTTG 57.370 36.000 0.00 0.00 37.04 2.32
3130 4191 7.402054 ACTTGGTGTTAGATACATCCATTTGA 58.598 34.615 0.00 0.00 37.04 2.69
3131 4192 7.554118 ACTTGGTGTTAGATACATCCATTTGAG 59.446 37.037 0.00 0.00 37.04 3.02
3132 4193 6.356556 TGGTGTTAGATACATCCATTTGAGG 58.643 40.000 0.00 0.00 37.04 3.86
3133 4194 5.765182 GGTGTTAGATACATCCATTTGAGGG 59.235 44.000 0.00 0.00 39.39 4.30
3134 4195 6.409234 GGTGTTAGATACATCCATTTGAGGGA 60.409 42.308 0.00 0.00 39.39 4.20
3135 4196 6.483640 GTGTTAGATACATCCATTTGAGGGAC 59.516 42.308 0.00 0.00 39.39 4.46
3136 4197 6.157820 TGTTAGATACATCCATTTGAGGGACA 59.842 38.462 0.00 0.00 37.23 4.02
3137 4198 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3138 4199 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3139 4200 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3140 4201 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3141 4202 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3142 4203 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3143 4204 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3144 4205 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
3145 4206 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
3146 4207 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
3147 4208 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
3148 4209 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
3149 4210 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
3150 4211 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
3151 4212 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
3152 4213 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
3153 4214 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
3154 4215 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
3155 4216 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
3156 4217 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
3157 4218 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
3198 4259 4.756642 TCAGTTGCATATATAACAGCCTGC 59.243 41.667 0.00 0.00 0.00 4.85
3236 4297 8.189119 TGGCCTTAACTGTCTTAATTTGATTT 57.811 30.769 3.32 0.00 0.00 2.17
3348 4409 6.004574 GGAAGGTGGTCTCAAGAGTAAAATT 58.995 40.000 0.00 0.00 0.00 1.82
3457 4518 8.734218 ATCCAGAAGATGCATATGCTTATTAG 57.266 34.615 27.13 18.24 42.66 1.73
3661 4724 8.862325 TGAACAGGTAAATGATTATTCAGTGT 57.138 30.769 0.00 0.00 34.73 3.55
3668 4731 9.369904 GGTAAATGATTATTCAGTGTTTTGCAT 57.630 29.630 0.00 0.00 34.73 3.96
3707 4772 5.014808 AGCTTCATGCAAAGTGTTCTTTT 57.985 34.783 0.00 0.00 45.94 2.27
3708 4773 5.422145 AGCTTCATGCAAAGTGTTCTTTTT 58.578 33.333 0.00 0.00 45.94 1.94
3738 4803 2.077687 GGGGGATGAAATCTGCATGT 57.922 50.000 0.00 0.00 44.71 3.21
3739 4804 2.391678 GGGGGATGAAATCTGCATGTT 58.608 47.619 0.00 0.00 44.71 2.71
3740 4805 3.565307 GGGGGATGAAATCTGCATGTTA 58.435 45.455 0.00 0.00 44.71 2.41
3741 4806 3.319122 GGGGGATGAAATCTGCATGTTAC 59.681 47.826 0.00 0.00 44.71 2.50
3742 4807 3.953612 GGGGATGAAATCTGCATGTTACA 59.046 43.478 0.00 0.00 44.71 2.41
3743 4808 4.037208 GGGGATGAAATCTGCATGTTACAG 59.963 45.833 0.00 0.00 44.71 2.74
3744 4809 4.641989 GGGATGAAATCTGCATGTTACAGT 59.358 41.667 0.00 0.00 44.71 3.55
3745 4810 5.822519 GGGATGAAATCTGCATGTTACAGTA 59.177 40.000 0.00 0.00 44.71 2.74
3746 4811 6.488006 GGGATGAAATCTGCATGTTACAGTAT 59.512 38.462 0.00 0.00 44.71 2.12
3747 4812 7.013655 GGGATGAAATCTGCATGTTACAGTATT 59.986 37.037 0.00 0.00 44.71 1.89
3748 4813 7.859377 GGATGAAATCTGCATGTTACAGTATTG 59.141 37.037 0.00 0.00 44.71 1.90
3749 4814 7.686438 TGAAATCTGCATGTTACAGTATTGT 57.314 32.000 0.00 0.00 41.39 2.71
3750 4815 8.785329 TGAAATCTGCATGTTACAGTATTGTA 57.215 30.769 0.00 0.00 38.76 2.41
3751 4816 8.882736 TGAAATCTGCATGTTACAGTATTGTAG 58.117 33.333 0.00 0.00 40.68 2.74
3752 4817 8.792830 AAATCTGCATGTTACAGTATTGTAGT 57.207 30.769 0.00 0.00 40.68 2.73
3753 4818 7.776933 ATCTGCATGTTACAGTATTGTAGTG 57.223 36.000 0.00 1.82 40.68 2.74
3754 4819 6.930731 TCTGCATGTTACAGTATTGTAGTGA 58.069 36.000 0.00 0.00 40.68 3.41
3755 4820 7.555965 TCTGCATGTTACAGTATTGTAGTGAT 58.444 34.615 0.00 0.00 40.68 3.06
3756 4821 8.040727 TCTGCATGTTACAGTATTGTAGTGATT 58.959 33.333 0.00 0.00 40.68 2.57
3757 4822 9.313118 CTGCATGTTACAGTATTGTAGTGATTA 57.687 33.333 0.00 0.00 40.68 1.75
3758 4823 9.830975 TGCATGTTACAGTATTGTAGTGATTAT 57.169 29.630 0.00 0.00 40.68 1.28
4024 5089 4.660789 AAGCTTCATGCAAAGTGTTCTT 57.339 36.364 0.00 0.00 45.94 2.52
4025 5090 4.660789 AGCTTCATGCAAAGTGTTCTTT 57.339 36.364 0.00 0.00 45.94 2.52
4026 5091 5.014808 AGCTTCATGCAAAGTGTTCTTTT 57.985 34.783 0.00 0.00 45.94 2.27
4027 5092 5.422145 AGCTTCATGCAAAGTGTTCTTTTT 58.578 33.333 0.00 0.00 45.94 1.94
4067 5132 7.013655 GGGATGAAATCTGCATGTTACAGTATT 59.986 37.037 0.00 0.00 44.71 1.89
4171 5237 3.485463 CAGGACTGGACTTTTGTACCA 57.515 47.619 0.00 0.00 30.36 3.25
4172 5238 3.403038 CAGGACTGGACTTTTGTACCAG 58.597 50.000 0.00 0.00 45.13 4.00
4173 5239 3.071023 CAGGACTGGACTTTTGTACCAGA 59.929 47.826 17.45 0.00 43.79 3.86
4174 5240 3.071167 AGGACTGGACTTTTGTACCAGAC 59.929 47.826 17.45 11.74 43.79 3.51
4175 5241 3.057734 GACTGGACTTTTGTACCAGACG 58.942 50.000 17.45 0.00 43.79 4.18
4176 5242 2.224209 ACTGGACTTTTGTACCAGACGG 60.224 50.000 17.45 0.00 43.79 4.79
4187 5513 2.332063 ACCAGACGGCCTGATATTTG 57.668 50.000 0.00 0.00 45.78 2.32
4194 5520 3.938963 GACGGCCTGATATTTGTTCAAGA 59.061 43.478 0.00 0.00 0.00 3.02
4214 5540 3.505293 AGACCACCTCTGTAGTTTCGTAC 59.495 47.826 0.00 0.00 0.00 3.67
4215 5541 3.494332 ACCACCTCTGTAGTTTCGTACT 58.506 45.455 0.00 0.00 41.04 2.73
4216 5542 3.505293 ACCACCTCTGTAGTTTCGTACTC 59.495 47.826 0.00 0.00 38.33 2.59
4217 5543 3.119566 CCACCTCTGTAGTTTCGTACTCC 60.120 52.174 0.00 0.00 38.33 3.85
4218 5544 3.087781 ACCTCTGTAGTTTCGTACTCCC 58.912 50.000 0.00 0.00 38.33 4.30
4219 5545 3.245193 ACCTCTGTAGTTTCGTACTCCCT 60.245 47.826 0.00 0.00 38.33 4.20
4220 5546 3.377798 CCTCTGTAGTTTCGTACTCCCTC 59.622 52.174 0.00 0.00 38.33 4.30
4221 5547 3.350833 TCTGTAGTTTCGTACTCCCTCC 58.649 50.000 0.00 0.00 38.33 4.30
4222 5548 2.086869 TGTAGTTTCGTACTCCCTCCG 58.913 52.381 0.00 0.00 38.33 4.63
4223 5549 2.087646 GTAGTTTCGTACTCCCTCCGT 58.912 52.381 0.00 0.00 38.33 4.69
4224 5550 1.172175 AGTTTCGTACTCCCTCCGTC 58.828 55.000 0.00 0.00 28.23 4.79
4225 5551 0.172127 GTTTCGTACTCCCTCCGTCC 59.828 60.000 0.00 0.00 0.00 4.79
4226 5552 1.308069 TTTCGTACTCCCTCCGTCCG 61.308 60.000 0.00 0.00 0.00 4.79
4227 5553 3.207669 CGTACTCCCTCCGTCCGG 61.208 72.222 0.00 0.00 0.00 5.14
4228 5554 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
4229 5555 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4230 5556 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4231 5557 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4232 5558 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4233 5559 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4234 5560 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4235 5561 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4236 5562 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4237 5563 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4238 5564 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4239 5565 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4240 5566 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4241 5567 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4242 5568 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4243 5569 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4244 5570 6.918800 CCGTCCGGAAATACTTGTCATCAAG 61.919 48.000 5.23 6.44 45.65 3.02
4245 5571 8.994207 CCGTCCGGAAATACTTGTCATCAAGA 62.994 46.154 5.23 0.31 44.37 3.02
4261 5587 7.828508 TCATCAAGATGAATAAAAGGGGATG 57.171 36.000 10.16 0.00 44.14 3.51
4262 5588 7.356680 TCATCAAGATGAATAAAAGGGGATGT 58.643 34.615 10.16 0.00 44.14 3.06
4263 5589 8.501904 TCATCAAGATGAATAAAAGGGGATGTA 58.498 33.333 10.16 0.00 44.14 2.29
4264 5590 9.305555 CATCAAGATGAATAAAAGGGGATGTAT 57.694 33.333 4.01 0.00 41.20 2.29
4265 5591 8.924511 TCAAGATGAATAAAAGGGGATGTATC 57.075 34.615 0.00 0.00 0.00 2.24
4266 5592 8.727149 TCAAGATGAATAAAAGGGGATGTATCT 58.273 33.333 0.00 0.00 0.00 1.98
4269 5595 9.621239 AGATGAATAAAAGGGGATGTATCTAGA 57.379 33.333 0.00 0.00 0.00 2.43
4272 5598 9.170890 TGAATAAAAGGGGATGTATCTAGATGT 57.829 33.333 15.79 1.25 0.00 3.06
4280 5606 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
4304 5630 8.778059 AGTTCTAGATACACCCATTTTTATCCA 58.222 33.333 0.00 0.00 0.00 3.41
4305 5631 9.574516 GTTCTAGATACACCCATTTTTATCCAT 57.425 33.333 0.00 0.00 0.00 3.41
4310 5636 9.265862 AGATACACCCATTTTTATCCATTTTGA 57.734 29.630 0.00 0.00 0.00 2.69
4312 5638 9.835389 ATACACCCATTTTTATCCATTTTGATG 57.165 29.630 0.00 0.00 0.00 3.07
4313 5639 7.915930 ACACCCATTTTTATCCATTTTGATGA 58.084 30.769 0.00 0.00 0.00 2.92
4314 5640 7.823799 ACACCCATTTTTATCCATTTTGATGAC 59.176 33.333 0.00 0.00 0.00 3.06
4315 5641 7.823310 CACCCATTTTTATCCATTTTGATGACA 59.177 33.333 0.00 0.00 0.00 3.58
4316 5642 8.381636 ACCCATTTTTATCCATTTTGATGACAA 58.618 29.630 0.00 0.00 0.00 3.18
4317 5643 8.885722 CCCATTTTTATCCATTTTGATGACAAG 58.114 33.333 0.00 0.00 37.32 3.16
4318 5644 9.439500 CCATTTTTATCCATTTTGATGACAAGT 57.561 29.630 0.00 0.00 37.32 3.16
4325 5651 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
4326 5652 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
4327 5653 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
4328 5654 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4329 5655 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4330 5656 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4331 5657 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4332 5658 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4333 5659 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4334 5660 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4335 5661 1.047034 AGTATTTCCGGACGGAGGGG 61.047 60.000 13.64 0.00 46.06 4.79
4439 5768 5.934921 GCTACATAGCTTTAAAACCAACGT 58.065 37.500 3.56 0.00 45.62 3.99
4444 5773 6.655848 ACATAGCTTTAAAACCAACGTGGATA 59.344 34.615 10.46 0.02 40.96 2.59
4480 5809 9.585099 CTCTTTAAATATCAGCCAGCTAGATAG 57.415 37.037 13.44 0.00 0.00 2.08
4519 5848 3.214697 TGAGCAAATTGCCAATACGTG 57.785 42.857 15.04 0.00 46.52 4.49
4598 5928 4.181051 GCCCTTGGCTCAACTGTT 57.819 55.556 0.00 0.00 46.69 3.16
4637 5967 2.431683 GTTGCTGTCCTGCCTCCA 59.568 61.111 0.00 0.00 0.00 3.86
4753 6083 1.302949 GGCTTCACCATGCCCTGTA 59.697 57.895 0.00 0.00 43.11 2.74
4761 6091 1.603842 CATGCCCTGTACTCTGCCA 59.396 57.895 0.00 0.00 0.00 4.92
4835 6165 7.452562 AGGAAGTTGGGTAAGTTAATTCGTTA 58.547 34.615 0.00 0.00 29.74 3.18
4836 6166 7.605309 AGGAAGTTGGGTAAGTTAATTCGTTAG 59.395 37.037 0.00 0.00 29.74 2.34
4837 6167 7.388776 GGAAGTTGGGTAAGTTAATTCGTTAGT 59.611 37.037 0.00 0.00 29.74 2.24
4838 6168 9.423061 GAAGTTGGGTAAGTTAATTCGTTAGTA 57.577 33.333 0.00 0.00 29.74 1.82
4839 6169 8.763049 AGTTGGGTAAGTTAATTCGTTAGTAC 57.237 34.615 0.00 0.00 0.00 2.73
4840 6170 8.588472 AGTTGGGTAAGTTAATTCGTTAGTACT 58.412 33.333 0.00 0.00 0.00 2.73
4841 6171 8.864024 GTTGGGTAAGTTAATTCGTTAGTACTC 58.136 37.037 0.00 0.00 0.00 2.59
4842 6172 7.547227 TGGGTAAGTTAATTCGTTAGTACTCC 58.453 38.462 0.00 0.00 0.00 3.85
4843 6173 6.980978 GGGTAAGTTAATTCGTTAGTACTCCC 59.019 42.308 0.00 0.00 0.00 4.30
4844 6174 7.147828 GGGTAAGTTAATTCGTTAGTACTCCCT 60.148 40.741 0.00 0.00 0.00 4.20
4845 6175 7.918033 GGTAAGTTAATTCGTTAGTACTCCCTC 59.082 40.741 0.00 0.00 0.00 4.30
4846 6176 6.462552 AGTTAATTCGTTAGTACTCCCTCC 57.537 41.667 0.00 0.00 0.00 4.30
4847 6177 5.067023 AGTTAATTCGTTAGTACTCCCTCCG 59.933 44.000 0.00 0.00 0.00 4.63
4848 6178 2.496899 TTCGTTAGTACTCCCTCCGT 57.503 50.000 0.00 0.00 0.00 4.69
4849 6179 2.496899 TCGTTAGTACTCCCTCCGTT 57.503 50.000 0.00 0.00 0.00 4.44
4850 6180 2.359900 TCGTTAGTACTCCCTCCGTTC 58.640 52.381 0.00 0.00 0.00 3.95
4851 6181 1.403323 CGTTAGTACTCCCTCCGTTCC 59.597 57.143 0.00 0.00 0.00 3.62
4852 6182 2.732763 GTTAGTACTCCCTCCGTTCCT 58.267 52.381 0.00 0.00 0.00 3.36
4853 6183 3.682718 CGTTAGTACTCCCTCCGTTCCTA 60.683 52.174 0.00 0.00 0.00 2.94
4854 6184 4.273318 GTTAGTACTCCCTCCGTTCCTAA 58.727 47.826 0.00 0.00 0.00 2.69
4855 6185 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4856 6186 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4857 6187 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4858 6188 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4859 6189 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
4860 6190 6.947158 AGTACTCCCTCCGTTCCTAAATATAG 59.053 42.308 0.00 0.00 0.00 1.31
4861 6191 5.961897 ACTCCCTCCGTTCCTAAATATAGA 58.038 41.667 0.00 0.00 0.00 1.98
4862 6192 6.563163 ACTCCCTCCGTTCCTAAATATAGAT 58.437 40.000 0.00 0.00 0.00 1.98
4863 6193 6.664384 ACTCCCTCCGTTCCTAAATATAGATC 59.336 42.308 0.00 0.00 0.00 2.75
4864 6194 6.801953 TCCCTCCGTTCCTAAATATAGATCT 58.198 40.000 0.00 0.00 0.00 2.75
4865 6195 7.246763 TCCCTCCGTTCCTAAATATAGATCTT 58.753 38.462 0.00 0.00 0.00 2.40
4866 6196 7.733501 TCCCTCCGTTCCTAAATATAGATCTTT 59.266 37.037 0.00 0.00 0.00 2.52
4867 6197 8.035984 CCCTCCGTTCCTAAATATAGATCTTTC 58.964 40.741 0.00 0.00 0.00 2.62
4868 6198 8.808092 CCTCCGTTCCTAAATATAGATCTTTCT 58.192 37.037 0.00 0.00 35.90 2.52
4883 6213 9.829507 ATAGATCTTTCTAGTGATTTCAACAGG 57.170 33.333 0.00 0.00 37.86 4.00
4884 6214 7.684529 AGATCTTTCTAGTGATTTCAACAGGT 58.315 34.615 0.00 0.00 0.00 4.00
4885 6215 7.605691 AGATCTTTCTAGTGATTTCAACAGGTG 59.394 37.037 0.00 0.00 0.00 4.00
4886 6216 6.826668 TCTTTCTAGTGATTTCAACAGGTGA 58.173 36.000 0.00 0.00 0.00 4.02
4887 6217 6.706270 TCTTTCTAGTGATTTCAACAGGTGAC 59.294 38.462 0.00 0.00 35.39 3.67
4888 6218 5.808366 TCTAGTGATTTCAACAGGTGACT 57.192 39.130 0.00 0.00 46.44 3.41
4889 6219 6.911250 TCTAGTGATTTCAACAGGTGACTA 57.089 37.500 0.00 0.00 40.21 2.59
4890 6220 6.688578 TCTAGTGATTTCAACAGGTGACTAC 58.311 40.000 0.00 0.00 40.21 2.73
4891 6221 5.290493 AGTGATTTCAACAGGTGACTACA 57.710 39.130 0.00 0.00 40.21 2.74
4892 6222 5.869579 AGTGATTTCAACAGGTGACTACAT 58.130 37.500 0.00 0.00 40.21 2.29
4893 6223 7.004555 AGTGATTTCAACAGGTGACTACATA 57.995 36.000 0.00 0.00 40.21 2.29
4894 6224 6.874134 AGTGATTTCAACAGGTGACTACATAC 59.126 38.462 0.00 0.00 40.21 2.39
4895 6225 5.867174 TGATTTCAACAGGTGACTACATACG 59.133 40.000 0.00 0.00 40.21 3.06
4896 6226 3.861276 TCAACAGGTGACTACATACGG 57.139 47.619 0.00 0.00 40.21 4.02
4897 6227 3.423749 TCAACAGGTGACTACATACGGA 58.576 45.455 0.00 0.00 40.21 4.69
4898 6228 3.442625 TCAACAGGTGACTACATACGGAG 59.557 47.826 0.00 0.00 40.21 4.63
4899 6229 3.083122 ACAGGTGACTACATACGGAGT 57.917 47.619 0.00 0.00 43.06 3.85
4900 6230 4.226427 ACAGGTGACTACATACGGAGTA 57.774 45.455 0.00 0.00 44.98 2.59
4901 6231 4.592942 ACAGGTGACTACATACGGAGTAA 58.407 43.478 0.00 0.00 44.16 2.24
4902 6232 5.012239 ACAGGTGACTACATACGGAGTAAA 58.988 41.667 0.00 0.00 44.16 2.01
4903 6233 5.477984 ACAGGTGACTACATACGGAGTAAAA 59.522 40.000 0.00 0.00 44.16 1.52
4904 6234 6.154021 ACAGGTGACTACATACGGAGTAAAAT 59.846 38.462 0.00 0.00 44.16 1.82
4905 6235 6.475727 CAGGTGACTACATACGGAGTAAAATG 59.524 42.308 0.00 0.00 44.16 2.32
4906 6236 6.379133 AGGTGACTACATACGGAGTAAAATGA 59.621 38.462 0.00 0.00 44.15 2.57
4907 6237 7.416438 AGGTGACTACATACGGAGTAAAATGAG 60.416 40.741 0.00 0.00 44.15 2.90
4919 6249 9.530633 ACGGAGTAAAATGAGTGAATCTATAAC 57.469 33.333 0.00 0.00 41.94 1.89
4920 6250 8.979574 CGGAGTAAAATGAGTGAATCTATAACC 58.020 37.037 0.00 0.00 0.00 2.85
4951 6281 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4953 6283 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
4954 6284 9.470399 TGTCTATATACATCCGTATGTGGTAAT 57.530 33.333 3.56 0.00 45.99 1.89
4955 6285 9.947669 GTCTATATACATCCGTATGTGGTAATC 57.052 37.037 3.56 0.00 45.99 1.75
4956 6286 9.916360 TCTATATACATCCGTATGTGGTAATCT 57.084 33.333 3.56 0.00 45.99 2.40
4961 6291 7.962964 ACATCCGTATGTGGTAATCTATTTG 57.037 36.000 0.00 0.00 44.79 2.32
4962 6292 7.732025 ACATCCGTATGTGGTAATCTATTTGA 58.268 34.615 0.00 0.00 44.79 2.69
4963 6293 8.208224 ACATCCGTATGTGGTAATCTATTTGAA 58.792 33.333 0.00 0.00 44.79 2.69
4964 6294 9.051679 CATCCGTATGTGGTAATCTATTTGAAA 57.948 33.333 0.00 0.00 0.00 2.69
4965 6295 9.793259 ATCCGTATGTGGTAATCTATTTGAAAT 57.207 29.630 0.00 0.00 0.00 2.17
4966 6296 9.268268 TCCGTATGTGGTAATCTATTTGAAATC 57.732 33.333 0.00 0.00 0.00 2.17
4967 6297 9.273016 CCGTATGTGGTAATCTATTTGAAATCT 57.727 33.333 0.00 0.00 0.00 2.40
4996 6326 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4997 6327 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5231 6688 7.453393 CCTTCATCTAATACCATGGCTCTTTA 58.547 38.462 13.04 4.02 0.00 1.85
5378 6835 5.200483 TCTTCAGTTTTTGAACCCAGATGT 58.800 37.500 0.00 0.00 40.82 3.06
5404 6861 2.710096 TTTGAGGATCCGGTGGAATC 57.290 50.000 5.98 0.00 34.34 2.52
5589 7046 1.177401 GTGAAAGCCAATGACCTCCC 58.823 55.000 0.00 0.00 0.00 4.30
5590 7047 1.075601 TGAAAGCCAATGACCTCCCT 58.924 50.000 0.00 0.00 0.00 4.20
5591 7048 1.004745 TGAAAGCCAATGACCTCCCTC 59.995 52.381 0.00 0.00 0.00 4.30
5592 7049 0.332972 AAAGCCAATGACCTCCCTCC 59.667 55.000 0.00 0.00 0.00 4.30
5593 7050 0.551131 AAGCCAATGACCTCCCTCCT 60.551 55.000 0.00 0.00 0.00 3.69
5594 7051 1.225704 GCCAATGACCTCCCTCCTG 59.774 63.158 0.00 0.00 0.00 3.86
5764 7221 3.947834 CCTCTTCCCGATTTAGTTGCAAT 59.052 43.478 0.59 0.00 0.00 3.56
5765 7222 5.123227 CCTCTTCCCGATTTAGTTGCAATA 58.877 41.667 0.59 0.00 0.00 1.90
5806 7265 4.681744 CCAACTTGTACACATTTGCAACT 58.318 39.130 0.00 0.00 0.00 3.16
5811 7270 7.328277 ACTTGTACACATTTGCAACTTTCTA 57.672 32.000 0.00 0.00 0.00 2.10
6002 7463 0.036022 GGAGTCAGCTGAAAGTGCCT 59.964 55.000 20.19 10.20 35.30 4.75
6026 7487 3.873952 GGCTTAGACCATCAATGTCAGTC 59.126 47.826 0.00 0.00 0.00 3.51
6125 7586 2.159517 GGTGCCTACAAAAGAATCGCTG 60.160 50.000 0.00 0.00 0.00 5.18
6249 7710 1.891060 GAAAGACACAGCGCCGACAG 61.891 60.000 2.29 0.00 0.00 3.51
6281 7742 2.665185 GAGCCAAACGACAGCGGT 60.665 61.111 0.00 0.00 43.17 5.68
6407 7868 1.137825 CTCGTTCGGAGACCTGCTC 59.862 63.158 0.00 0.00 46.23 4.26
6466 7927 5.129485 TCCTGTTCAAGATACCAGAGGATTC 59.871 44.000 0.00 0.00 0.00 2.52
6467 7928 5.359194 TGTTCAAGATACCAGAGGATTCC 57.641 43.478 0.00 0.00 0.00 3.01
6468 7929 4.141937 TGTTCAAGATACCAGAGGATTCCG 60.142 45.833 0.00 0.00 0.00 4.30
6469 7930 3.910989 TCAAGATACCAGAGGATTCCGA 58.089 45.455 0.00 0.00 0.00 4.55
6470 7931 3.891977 TCAAGATACCAGAGGATTCCGAG 59.108 47.826 0.00 0.00 0.00 4.63
6471 7932 3.885976 AGATACCAGAGGATTCCGAGA 57.114 47.619 0.00 0.00 0.00 4.04
6472 7933 4.186077 AGATACCAGAGGATTCCGAGAA 57.814 45.455 0.00 0.00 0.00 2.87
6473 7934 3.892588 AGATACCAGAGGATTCCGAGAAC 59.107 47.826 0.00 0.00 0.00 3.01
6474 7935 2.239681 ACCAGAGGATTCCGAGAACT 57.760 50.000 0.00 0.00 0.00 3.01
6475 7936 1.827969 ACCAGAGGATTCCGAGAACTG 59.172 52.381 0.00 4.03 0.00 3.16
6476 7937 2.103373 CCAGAGGATTCCGAGAACTGA 58.897 52.381 13.83 0.00 0.00 3.41
6477 7938 2.497675 CCAGAGGATTCCGAGAACTGAA 59.502 50.000 13.83 0.00 0.00 3.02
6478 7939 3.430098 CCAGAGGATTCCGAGAACTGAAG 60.430 52.174 13.83 0.00 0.00 3.02
6479 7940 2.167487 AGAGGATTCCGAGAACTGAAGC 59.833 50.000 0.00 0.00 0.00 3.86
6480 7941 2.167487 GAGGATTCCGAGAACTGAAGCT 59.833 50.000 0.00 0.00 0.00 3.74
6481 7942 2.093764 AGGATTCCGAGAACTGAAGCTG 60.094 50.000 0.00 0.00 0.00 4.24
6482 7943 2.093973 GGATTCCGAGAACTGAAGCTGA 60.094 50.000 0.00 0.00 0.00 4.26
6483 7944 3.431486 GGATTCCGAGAACTGAAGCTGAT 60.431 47.826 0.00 0.00 0.00 2.90
6484 7945 3.685139 TTCCGAGAACTGAAGCTGATT 57.315 42.857 0.00 0.00 0.00 2.57
6514 7975 0.610232 AAGCTGCACCCCAGATGAAC 60.610 55.000 1.02 0.00 44.64 3.18
6681 8143 6.096282 TCGAAGATTGTTCCTTGGTTCTTTTT 59.904 34.615 0.00 0.00 0.00 1.94
6683 8145 7.918562 CGAAGATTGTTCCTTGGTTCTTTTTAA 59.081 33.333 0.00 0.00 0.00 1.52
6684 8146 8.942338 AAGATTGTTCCTTGGTTCTTTTTAAC 57.058 30.769 0.00 0.00 0.00 2.01
6685 8147 8.306313 AGATTGTTCCTTGGTTCTTTTTAACT 57.694 30.769 0.00 0.00 0.00 2.24
6686 8148 8.414003 AGATTGTTCCTTGGTTCTTTTTAACTC 58.586 33.333 0.00 0.00 0.00 3.01
6687 8149 6.126568 TGTTCCTTGGTTCTTTTTAACTCG 57.873 37.500 0.00 0.00 0.00 4.18
6789 8251 8.029642 CCGTATTGGTTTCCAGTAATGATATC 57.970 38.462 0.00 0.00 33.81 1.63
6823 8285 2.919960 TTTGTCGGGGTCGTTGCGAA 62.920 55.000 0.00 0.00 37.72 4.70
6842 8304 0.536006 ACTTGTGGCTTCTGGTCTGC 60.536 55.000 0.00 0.00 0.00 4.26
6857 8319 1.468985 TCTGCTGAGTCAGACTAGGC 58.531 55.000 24.55 16.24 38.11 3.93
6858 8320 0.459489 CTGCTGAGTCAGACTAGGCC 59.541 60.000 24.55 0.00 36.19 5.19
6859 8321 0.251787 TGCTGAGTCAGACTAGGCCA 60.252 55.000 24.55 7.27 32.44 5.36
6874 8336 1.376553 GCCACCTCACCTTCTCAGC 60.377 63.158 0.00 0.00 0.00 4.26
6875 8337 1.079543 CCACCTCACCTTCTCAGCG 60.080 63.158 0.00 0.00 0.00 5.18
6876 8338 1.079543 CACCTCACCTTCTCAGCGG 60.080 63.158 0.00 0.00 0.00 5.52
6877 8339 1.534235 ACCTCACCTTCTCAGCGGT 60.534 57.895 0.00 0.00 0.00 5.68
6878 8340 1.216710 CCTCACCTTCTCAGCGGTC 59.783 63.158 0.00 0.00 0.00 4.79
6879 8341 1.153939 CTCACCTTCTCAGCGGTCG 60.154 63.158 0.00 0.00 0.00 4.79
6880 8342 1.587043 CTCACCTTCTCAGCGGTCGA 61.587 60.000 0.00 0.00 0.00 4.20
6881 8343 1.176619 TCACCTTCTCAGCGGTCGAA 61.177 55.000 0.00 0.00 0.00 3.71
6882 8344 1.009389 CACCTTCTCAGCGGTCGAAC 61.009 60.000 0.00 0.00 0.00 3.95
6883 8345 1.179814 ACCTTCTCAGCGGTCGAACT 61.180 55.000 0.00 0.00 0.00 3.01
6884 8346 0.734253 CCTTCTCAGCGGTCGAACTG 60.734 60.000 0.00 1.70 35.15 3.16
6892 8354 1.641577 GCGGTCGAACTGCTTTATCT 58.358 50.000 9.53 0.00 46.62 1.98
6893 8355 2.000447 GCGGTCGAACTGCTTTATCTT 59.000 47.619 9.53 0.00 46.62 2.40
6894 8356 2.415512 GCGGTCGAACTGCTTTATCTTT 59.584 45.455 9.53 0.00 46.62 2.52
6895 8357 3.483738 GCGGTCGAACTGCTTTATCTTTC 60.484 47.826 9.53 0.00 46.62 2.62
6896 8358 3.062234 CGGTCGAACTGCTTTATCTTTCC 59.938 47.826 0.00 0.00 0.00 3.13
6897 8359 3.374367 GGTCGAACTGCTTTATCTTTCCC 59.626 47.826 0.00 0.00 0.00 3.97
6898 8360 4.254492 GTCGAACTGCTTTATCTTTCCCT 58.746 43.478 0.00 0.00 0.00 4.20
6899 8361 4.330347 GTCGAACTGCTTTATCTTTCCCTC 59.670 45.833 0.00 0.00 0.00 4.30
6900 8362 3.307242 CGAACTGCTTTATCTTTCCCTCG 59.693 47.826 0.00 0.00 0.00 4.63
6901 8363 4.504858 GAACTGCTTTATCTTTCCCTCGA 58.495 43.478 0.00 0.00 0.00 4.04
6902 8364 4.762289 ACTGCTTTATCTTTCCCTCGAT 57.238 40.909 0.00 0.00 0.00 3.59
6903 8365 4.446371 ACTGCTTTATCTTTCCCTCGATG 58.554 43.478 0.00 0.00 0.00 3.84
6904 8366 4.162320 ACTGCTTTATCTTTCCCTCGATGA 59.838 41.667 0.00 0.00 0.00 2.92
6905 8367 5.097742 TGCTTTATCTTTCCCTCGATGAA 57.902 39.130 0.00 0.00 0.00 2.57
6906 8368 4.876107 TGCTTTATCTTTCCCTCGATGAAC 59.124 41.667 0.00 0.00 0.00 3.18
6907 8369 5.119694 GCTTTATCTTTCCCTCGATGAACT 58.880 41.667 0.00 0.00 0.00 3.01
6908 8370 5.586643 GCTTTATCTTTCCCTCGATGAACTT 59.413 40.000 0.00 0.00 0.00 2.66
6909 8371 6.761714 GCTTTATCTTTCCCTCGATGAACTTA 59.238 38.462 0.00 0.00 0.00 2.24
6910 8372 7.254488 GCTTTATCTTTCCCTCGATGAACTTAC 60.254 40.741 0.00 0.00 0.00 2.34
6911 8373 5.941555 ATCTTTCCCTCGATGAACTTACT 57.058 39.130 0.00 0.00 0.00 2.24
6912 8374 5.073311 TCTTTCCCTCGATGAACTTACTG 57.927 43.478 0.00 0.00 0.00 2.74
6913 8375 4.770531 TCTTTCCCTCGATGAACTTACTGA 59.229 41.667 0.00 0.00 0.00 3.41
6914 8376 5.422331 TCTTTCCCTCGATGAACTTACTGAT 59.578 40.000 0.00 0.00 0.00 2.90
6915 8377 4.655762 TCCCTCGATGAACTTACTGATG 57.344 45.455 0.00 0.00 0.00 3.07
6916 8378 4.023980 TCCCTCGATGAACTTACTGATGT 58.976 43.478 0.00 0.00 0.00 3.06
6917 8379 4.098044 TCCCTCGATGAACTTACTGATGTC 59.902 45.833 0.00 0.00 0.00 3.06
6918 8380 4.363999 CCTCGATGAACTTACTGATGTCC 58.636 47.826 0.00 0.00 0.00 4.02
6919 8381 4.098654 CCTCGATGAACTTACTGATGTCCT 59.901 45.833 0.00 0.00 0.00 3.85
6920 8382 5.250235 TCGATGAACTTACTGATGTCCTC 57.750 43.478 0.00 0.00 0.00 3.71
6921 8383 4.098044 TCGATGAACTTACTGATGTCCTCC 59.902 45.833 0.00 0.00 0.00 4.30
6922 8384 3.868757 TGAACTTACTGATGTCCTCCG 57.131 47.619 0.00 0.00 0.00 4.63
6923 8385 3.427573 TGAACTTACTGATGTCCTCCGA 58.572 45.455 0.00 0.00 0.00 4.55
6924 8386 3.192844 TGAACTTACTGATGTCCTCCGAC 59.807 47.826 0.00 0.00 39.66 4.79
6933 8395 1.627864 TGTCCTCCGACAACTCATCA 58.372 50.000 0.00 0.00 46.09 3.07
6934 8396 1.967779 TGTCCTCCGACAACTCATCAA 59.032 47.619 0.00 0.00 46.09 2.57
6935 8397 2.367241 TGTCCTCCGACAACTCATCAAA 59.633 45.455 0.00 0.00 46.09 2.69
6936 8398 2.996621 GTCCTCCGACAACTCATCAAAG 59.003 50.000 0.00 0.00 38.99 2.77
6939 8401 4.282449 TCCTCCGACAACTCATCAAAGTTA 59.718 41.667 0.00 0.00 37.38 2.24
6952 8414 9.886132 ACTCATCAAAGTTATATCGTTTTAGGT 57.114 29.630 0.00 0.00 0.00 3.08
6958 8420 8.875803 CAAAGTTATATCGTTTTAGGTGTAGCA 58.124 33.333 0.00 0.00 0.00 3.49
7038 10929 1.995484 CACACGTGCTTAGGTCATCTG 59.005 52.381 17.22 0.00 0.00 2.90
7122 11599 1.916181 GAAAAGGGAGGGACAGGATGA 59.084 52.381 0.00 0.00 39.69 2.92
7123 11600 2.293598 AAAGGGAGGGACAGGATGAT 57.706 50.000 0.00 0.00 39.69 2.45
7126 11603 1.348008 GGGAGGGACAGGATGATGCA 61.348 60.000 0.00 0.00 39.69 3.96
7128 11605 1.673168 GAGGGACAGGATGATGCAAC 58.327 55.000 0.00 0.00 39.69 4.17
7129 11606 0.257039 AGGGACAGGATGATGCAACC 59.743 55.000 0.00 0.00 39.69 3.77
7130 11607 1.097547 GGGACAGGATGATGCAACCG 61.098 60.000 0.00 0.00 39.69 4.44
7138 11615 2.545532 GGATGATGCAACCGAGAGAGAG 60.546 54.545 0.00 0.00 0.00 3.20
7219 11756 3.109547 GGATGTGCGCGTCGTCAA 61.110 61.111 20.49 0.00 0.00 3.18
7220 11757 2.452813 GGATGTGCGCGTCGTCAAT 61.453 57.895 20.49 3.98 0.00 2.57
7221 11758 1.419922 GATGTGCGCGTCGTCAATT 59.580 52.632 8.43 0.00 0.00 2.32
7222 11759 0.643310 GATGTGCGCGTCGTCAATTA 59.357 50.000 8.43 0.00 0.00 1.40
7223 11760 0.368907 ATGTGCGCGTCGTCAATTAC 59.631 50.000 8.43 0.00 0.00 1.89
7308 11845 1.392710 CGAGGGAGATAGGCAACGGT 61.393 60.000 0.00 0.00 46.39 4.83
7340 11877 0.758734 CTGACGAGCATAATGGGGGA 59.241 55.000 0.00 0.00 0.00 4.81
7365 12032 2.300152 TGAAAATGACAGAGCTCGTCCT 59.700 45.455 25.43 17.81 32.15 3.85
7373 12040 1.227946 GAGCTCGTCCTACCCTCCT 59.772 63.158 0.00 0.00 0.00 3.69
7442 12109 2.267174 AGATTCATGCGGGGATCAAG 57.733 50.000 0.00 0.00 0.00 3.02
7454 12170 1.095228 GGATCAAGCGGCCGATTCAA 61.095 55.000 33.48 20.14 0.00 2.69
7465 12181 2.546494 CGATTCAAGCGGGCCCATC 61.546 63.158 24.92 14.94 0.00 3.51
7466 12182 2.123726 ATTCAAGCGGGCCCATCC 60.124 61.111 24.92 9.50 0.00 3.51
7467 12183 2.909457 GATTCAAGCGGGCCCATCCA 62.909 60.000 24.92 0.00 36.21 3.41
7468 12184 2.512986 ATTCAAGCGGGCCCATCCAA 62.513 55.000 24.92 7.66 36.21 3.53
7469 12185 2.442643 CAAGCGGGCCCATCCAAT 60.443 61.111 24.92 0.00 36.21 3.16
7470 12186 2.059786 CAAGCGGGCCCATCCAATT 61.060 57.895 24.92 3.30 36.21 2.32
7471 12187 1.306056 AAGCGGGCCCATCCAATTT 60.306 52.632 24.92 1.42 36.21 1.82
7472 12188 1.329913 AAGCGGGCCCATCCAATTTC 61.330 55.000 24.92 0.00 36.21 2.17
7473 12189 1.758122 GCGGGCCCATCCAATTTCT 60.758 57.895 24.92 0.00 36.21 2.52
7474 12190 2.019897 GCGGGCCCATCCAATTTCTG 62.020 60.000 24.92 0.84 36.21 3.02
7475 12191 1.825341 GGGCCCATCCAATTTCTGC 59.175 57.895 19.95 0.00 36.21 4.26
7485 12201 0.697010 CAATTTCTGCGCGAACGTTG 59.303 50.000 12.10 15.16 42.83 4.10
7489 12205 4.430423 CTGCGCGAACGTTGGCTC 62.430 66.667 28.66 23.06 42.83 4.70
7493 12209 1.917921 CGCGAACGTTGGCTCTATC 59.082 57.895 28.66 1.66 33.53 2.08
7495 12211 0.645868 GCGAACGTTGGCTCTATCAC 59.354 55.000 25.59 0.00 0.00 3.06
7497 12213 2.333926 CGAACGTTGGCTCTATCACAA 58.666 47.619 5.00 0.00 0.00 3.33
7498 12214 2.092211 CGAACGTTGGCTCTATCACAAC 59.908 50.000 5.00 0.00 40.67 3.32
7499 12215 2.831685 ACGTTGGCTCTATCACAACA 57.168 45.000 0.00 0.00 43.38 3.33
7501 12217 3.002791 ACGTTGGCTCTATCACAACATG 58.997 45.455 0.00 0.00 43.38 3.21
7503 12219 2.042686 TGGCTCTATCACAACATGGC 57.957 50.000 0.00 0.00 0.00 4.40
7504 12220 1.281577 TGGCTCTATCACAACATGGCA 59.718 47.619 0.00 0.00 0.00 4.92
7505 12221 2.290832 TGGCTCTATCACAACATGGCAA 60.291 45.455 0.00 0.00 0.00 4.52
7506 12222 2.754552 GGCTCTATCACAACATGGCAAA 59.245 45.455 0.00 0.00 0.00 3.68
7508 12224 4.168760 GCTCTATCACAACATGGCAAAAC 58.831 43.478 0.00 0.00 0.00 2.43
7509 12225 4.737054 CTCTATCACAACATGGCAAAACC 58.263 43.478 0.00 0.00 39.84 3.27
7527 12663 9.267084 GGCAAAACCAGAAGTAAAATTTTCATA 57.733 29.630 6.72 0.00 38.86 2.15
7584 12788 7.093552 TGTTGTTATAGCTAAAATTGCCATGGT 60.094 33.333 14.67 0.00 0.00 3.55
7585 12789 8.410141 GTTGTTATAGCTAAAATTGCCATGGTA 58.590 33.333 14.67 5.86 0.00 3.25
7586 12790 8.526667 TGTTATAGCTAAAATTGCCATGGTAA 57.473 30.769 18.16 18.16 0.00 2.85
7587 12791 8.972127 TGTTATAGCTAAAATTGCCATGGTAAA 58.028 29.630 19.72 11.66 0.00 2.01
7594 12798 9.986833 GCTAAAATTGCCATGGTAAAATAAAAG 57.013 29.630 19.72 12.51 0.00 2.27
7653 12857 1.434696 CCATGGCAAATCTGACGGC 59.565 57.895 0.00 0.00 30.46 5.68
7680 12884 7.588143 TTTCGTTATAATTTGCCATGGTTTG 57.412 32.000 14.67 0.00 0.00 2.93
7715 12919 6.973229 ATGTGCAAAATAAAAAGATGGCTC 57.027 33.333 0.00 0.00 0.00 4.70
7720 12924 5.422145 CAAAATAAAAAGATGGCTCCCCTG 58.578 41.667 0.00 0.00 0.00 4.45
7730 12934 2.046507 CTCCCCTGAGCTGTGCAC 60.047 66.667 10.75 10.75 0.00 4.57
7746 12950 5.163963 GCTGTGCACATATTTAAACTTTGCC 60.164 40.000 22.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.415843 CGTCGGACATGCGGGTAT 59.584 61.111 9.10 0.00 0.00 2.73
158 159 2.959484 CGTCTCCAGCACCCATGGT 61.959 63.158 11.73 0.00 39.01 3.55
197 202 2.126965 CTCTCGCCGTCGTCGTTT 60.127 61.111 0.71 0.00 36.96 3.60
227 232 3.024782 CTCTCGCCGTCGTCGTTCT 62.025 63.158 0.71 0.00 36.96 3.01
334 339 4.135153 CGTCCCTCGCCCTCACTG 62.135 72.222 0.00 0.00 0.00 3.66
353 358 0.243907 CAGTGAAGACCGGATGACGT 59.756 55.000 9.46 0.00 42.24 4.34
383 388 1.783031 CTGCGCCATTGATGCCTCTC 61.783 60.000 4.18 0.00 0.00 3.20
384 389 1.822613 CTGCGCCATTGATGCCTCT 60.823 57.895 4.18 0.00 0.00 3.69
425 430 3.202001 CCCGCGGCGAATCAATGT 61.202 61.111 25.92 0.00 0.00 2.71
508 513 0.171455 TGTTTTGGCGCGAAACAGTT 59.829 45.000 26.68 0.00 41.19 3.16
509 514 1.803943 TGTTTTGGCGCGAAACAGT 59.196 47.368 26.68 0.00 41.19 3.55
618 625 2.029666 GTCGCATCCCCAGGATCG 59.970 66.667 0.00 1.77 40.98 3.69
620 627 2.446848 CCAGTCGCATCCCCAGGAT 61.447 63.158 0.00 0.00 44.21 3.24
630 637 1.582610 GAAAAATCGGCCCAGTCGCA 61.583 55.000 0.00 0.00 0.00 5.10
739 752 4.639824 GAAAACGTTTTCCCCCGC 57.360 55.556 33.63 15.37 40.41 6.13
779 797 4.615834 TCGCGTTTGCCGTTTGCC 62.616 61.111 5.77 0.00 40.16 4.52
786 804 3.578272 TGTGTGGTCGCGTTTGCC 61.578 61.111 5.77 5.41 38.08 4.52
1064 1103 0.456221 GCGAATGAGGAAGACGGAGA 59.544 55.000 0.00 0.00 0.00 3.71
1065 1104 0.867753 CGCGAATGAGGAAGACGGAG 60.868 60.000 0.00 0.00 0.00 4.63
1066 1105 1.138883 CGCGAATGAGGAAGACGGA 59.861 57.895 0.00 0.00 0.00 4.69
1146 1197 4.753877 CGCGCTGGTCGAGTCGAA 62.754 66.667 18.42 1.14 41.67 3.71
1471 1525 4.504916 CTCCTGCTCGACGCCCAG 62.505 72.222 7.38 7.38 38.05 4.45
1473 1527 4.200283 CTCTCCTGCTCGACGCCC 62.200 72.222 4.73 0.00 38.05 6.13
1512 1566 1.666189 GCTCCCGATAGCACAGAAAAC 59.334 52.381 4.33 0.00 42.30 2.43
1531 1585 3.491652 GCGAAAGGGCTCGACAGC 61.492 66.667 0.00 0.00 46.06 4.40
1643 1700 2.277591 GCTTGGCCACTGCAATCCA 61.278 57.895 21.16 0.00 40.13 3.41
1657 1714 3.827008 TCCCTCTATAACAGCAGCTTG 57.173 47.619 0.00 0.00 0.00 4.01
1658 1715 5.372373 GAAATCCCTCTATAACAGCAGCTT 58.628 41.667 0.00 0.00 0.00 3.74
1675 1733 6.424812 CCATTGTTCTCACAAAAAGGAAATCC 59.575 38.462 0.00 0.00 46.17 3.01
1680 1741 3.069443 GCCCATTGTTCTCACAAAAAGGA 59.931 43.478 5.89 0.00 46.17 3.36
1732 1795 0.680921 ACTTGCATCCATCAACCCCG 60.681 55.000 0.00 0.00 0.00 5.73
1736 1799 5.008415 CAGGATCTAACTTGCATCCATCAAC 59.992 44.000 3.24 0.00 38.95 3.18
1741 1804 4.019411 TCAACAGGATCTAACTTGCATCCA 60.019 41.667 3.24 0.00 38.95 3.41
1746 1809 4.333926 GGACATCAACAGGATCTAACTTGC 59.666 45.833 0.00 0.00 32.57 4.01
1747 1810 4.878397 GGGACATCAACAGGATCTAACTTG 59.122 45.833 0.00 0.00 32.57 3.16
1778 1841 0.603569 AGCAGACTGTGAACCTACCG 59.396 55.000 3.99 0.00 0.00 4.02
1782 1845 2.564947 CCTAGAAGCAGACTGTGAACCT 59.435 50.000 3.99 0.00 0.00 3.50
1784 1847 3.321497 CACCTAGAAGCAGACTGTGAAC 58.679 50.000 3.99 0.00 0.00 3.18
1785 1848 2.300152 CCACCTAGAAGCAGACTGTGAA 59.700 50.000 3.99 0.00 0.00 3.18
1807 1870 0.931662 GCCATTCAATAAGCGCTGCG 60.932 55.000 19.17 19.17 0.00 5.18
1808 1871 0.383231 AGCCATTCAATAAGCGCTGC 59.617 50.000 12.58 6.57 0.00 5.25
1809 1872 1.268896 CCAGCCATTCAATAAGCGCTG 60.269 52.381 12.58 0.00 39.04 5.18
1810 1873 1.027357 CCAGCCATTCAATAAGCGCT 58.973 50.000 2.64 2.64 0.00 5.92
1823 1886 0.613572 TGGAGATACACGTCCAGCCA 60.614 55.000 0.00 0.00 37.96 4.75
1843 1906 2.232452 CCAGCCTCTACATAGAATCCCG 59.768 54.545 0.00 0.00 0.00 5.14
1849 1912 5.008331 CGGTAATACCAGCCTCTACATAGA 58.992 45.833 10.40 0.00 38.47 1.98
1874 1937 0.984230 CTAGGTGGCCTCCAAGTCAA 59.016 55.000 25.36 3.21 34.18 3.18
1880 1943 0.621571 AGATTGCTAGGTGGCCTCCA 60.622 55.000 25.36 10.67 34.61 3.86
1886 1949 3.356529 AACCTTGAGATTGCTAGGTGG 57.643 47.619 0.00 0.00 41.99 4.61
1890 1953 7.275920 ACCTATGTAAACCTTGAGATTGCTAG 58.724 38.462 0.00 0.00 0.00 3.42
1891 1954 7.195374 ACCTATGTAAACCTTGAGATTGCTA 57.805 36.000 0.00 0.00 0.00 3.49
1894 1957 7.029563 GCAAACCTATGTAAACCTTGAGATTG 58.970 38.462 0.00 0.00 0.00 2.67
1952 2027 2.298729 CCAAACCAAATCGACCAACCAT 59.701 45.455 0.00 0.00 0.00 3.55
2136 2229 7.413446 TCCCATGAAACTCTATGAAGGATTTT 58.587 34.615 0.00 0.00 0.00 1.82
2166 2260 4.246458 CCTTGAACAGTAGCAACTCCTAC 58.754 47.826 0.00 0.00 38.34 3.18
2186 2280 1.202582 GCACACTGACGTCATCTACCT 59.797 52.381 20.40 0.00 0.00 3.08
2196 2290 1.570813 TCTTGACTTGCACACTGACG 58.429 50.000 0.00 0.00 0.00 4.35
2268 2364 2.758423 AGAATGCACCCCGGTAAATTTC 59.242 45.455 0.00 0.00 0.00 2.17
2403 2501 7.500892 ACGCATACAAACTATGAATCCCAAATA 59.499 33.333 0.00 0.00 0.00 1.40
2418 2516 5.092105 TGCAATTCATGTACGCATACAAAC 58.908 37.500 0.00 0.00 44.47 2.93
2716 2814 6.772360 TGCTGGCAGAATTGTCATAAATAA 57.228 33.333 20.86 0.00 38.45 1.40
2738 2836 4.152402 CACCGAAGTACCAAAAGACAGATG 59.848 45.833 0.00 0.00 0.00 2.90
2745 2843 5.699458 ACAGAATACACCGAAGTACCAAAAG 59.301 40.000 0.00 0.00 0.00 2.27
2750 2848 4.390909 CCAAACAGAATACACCGAAGTACC 59.609 45.833 0.00 0.00 0.00 3.34
2757 2855 1.821216 AGGCCAAACAGAATACACCG 58.179 50.000 5.01 0.00 0.00 4.94
2785 2883 5.185442 TCAATAAAGCATCACCAGCATCAAA 59.815 36.000 0.00 0.00 0.00 2.69
2796 2894 5.647658 CCAACTGTACCTCAATAAAGCATCA 59.352 40.000 0.00 0.00 0.00 3.07
2891 3952 7.596494 ACCAACATTTCAATTCTCTGTGTATG 58.404 34.615 0.00 0.00 0.00 2.39
2899 3960 8.330302 CAAACAAGAACCAACATTTCAATTCTC 58.670 33.333 0.00 0.00 0.00 2.87
2948 4009 5.163663 GCAAATTGGACAGGAATACATCGAA 60.164 40.000 0.00 0.00 0.00 3.71
3028 4089 4.101741 GGAGGGAGTACTGCAGTAATCATT 59.898 45.833 39.60 30.80 44.62 2.57
3035 4096 0.542232 AACGGAGGGAGTACTGCAGT 60.542 55.000 25.12 25.12 0.00 4.40
3063 4124 5.893518 TTGAGGGACAAGCTTGGGACAAG 62.894 52.174 29.18 3.71 37.48 3.16
3064 4125 4.092026 TTGAGGGACAAGCTTGGGACAA 62.092 50.000 29.18 21.59 37.48 3.18
3065 4126 1.059584 TGAGGGACAAGCTTGGGACA 61.060 55.000 29.18 17.71 0.00 4.02
3066 4127 0.110486 TTGAGGGACAAGCTTGGGAC 59.890 55.000 29.18 18.90 34.20 4.46
3067 4128 0.850100 TTTGAGGGACAAGCTTGGGA 59.150 50.000 29.18 4.51 39.77 4.37
3068 4129 1.547372 CATTTGAGGGACAAGCTTGGG 59.453 52.381 29.18 6.83 39.77 4.12
3069 4130 1.547372 CCATTTGAGGGACAAGCTTGG 59.453 52.381 29.18 12.28 39.77 3.61
3070 4131 2.517959 TCCATTTGAGGGACAAGCTTG 58.482 47.619 24.84 24.84 39.77 4.01
3071 4132 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3072 4133 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3073 4134 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3074 4135 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3075 4136 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3076 4137 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3077 4138 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3078 4139 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3079 4140 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3080 4141 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
3081 4142 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
3082 4143 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
3083 4144 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
3084 4145 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
3085 4146 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
3086 4147 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
3087 4148 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3088 4149 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3089 4150 6.574350 ACACCAAGTTAGTGCTAGATACATC 58.426 40.000 0.99 0.00 38.87 3.06
3090 4151 6.546428 ACACCAAGTTAGTGCTAGATACAT 57.454 37.500 0.99 0.00 38.87 2.29
3091 4152 5.995565 ACACCAAGTTAGTGCTAGATACA 57.004 39.130 0.99 0.00 38.87 2.29
3103 4164 9.173021 CAAATGGATGTATCTAACACCAAGTTA 57.827 33.333 0.00 0.00 42.09 2.24
3104 4165 7.888021 TCAAATGGATGTATCTAACACCAAGTT 59.112 33.333 0.00 0.00 42.09 2.66
3105 4166 7.402054 TCAAATGGATGTATCTAACACCAAGT 58.598 34.615 0.00 0.00 42.09 3.16
3106 4167 7.012704 CCTCAAATGGATGTATCTAACACCAAG 59.987 40.741 0.00 0.00 42.09 3.61
3107 4168 6.828273 CCTCAAATGGATGTATCTAACACCAA 59.172 38.462 0.00 0.00 42.09 3.67
3108 4169 6.356556 CCTCAAATGGATGTATCTAACACCA 58.643 40.000 0.00 0.00 42.09 4.17
3109 4170 5.765182 CCCTCAAATGGATGTATCTAACACC 59.235 44.000 0.00 0.00 42.09 4.16
3110 4171 6.483640 GTCCCTCAAATGGATGTATCTAACAC 59.516 42.308 0.00 0.00 42.09 3.32
3111 4172 6.157820 TGTCCCTCAAATGGATGTATCTAACA 59.842 38.462 0.00 0.00 43.86 2.41
3112 4173 6.591935 TGTCCCTCAAATGGATGTATCTAAC 58.408 40.000 0.00 0.00 33.65 2.34
3113 4174 6.823286 TGTCCCTCAAATGGATGTATCTAA 57.177 37.500 0.00 0.00 33.65 2.10
3114 4175 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3115 4176 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3116 4177 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3117 4178 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3118 4179 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3119 4180 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3120 4181 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3121 4182 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3122 4183 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3123 4184 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
3124 4185 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
3125 4186 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
3126 4187 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
3127 4188 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
3128 4189 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
3129 4190 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
3130 4191 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
3131 4192 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
3132 4193 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
3133 4194 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
3134 4195 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
3135 4196 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
3136 4197 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
3137 4198 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
3138 4199 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
3139 4200 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
3140 4201 1.273327 GTACTCCCTCCGTCCGAAAAA 59.727 52.381 0.00 0.00 0.00 1.94
3141 4202 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3142 4203 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
3143 4204 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
3144 4205 0.839277 TATGTACTCCCTCCGTCCGA 59.161 55.000 0.00 0.00 0.00 4.55
3145 4206 1.906990 ATATGTACTCCCTCCGTCCG 58.093 55.000 0.00 0.00 0.00 4.79
3146 4207 4.831710 AGTTAATATGTACTCCCTCCGTCC 59.168 45.833 0.00 0.00 0.00 4.79
3147 4208 6.714356 ACTAGTTAATATGTACTCCCTCCGTC 59.286 42.308 0.00 0.00 0.00 4.79
3148 4209 6.489361 CACTAGTTAATATGTACTCCCTCCGT 59.511 42.308 0.00 0.00 0.00 4.69
3149 4210 6.489361 ACACTAGTTAATATGTACTCCCTCCG 59.511 42.308 0.00 0.00 0.00 4.63
3150 4211 7.836479 ACACTAGTTAATATGTACTCCCTCC 57.164 40.000 0.00 0.00 0.00 4.30
3151 4212 8.910944 TGAACACTAGTTAATATGTACTCCCTC 58.089 37.037 0.00 0.00 38.30 4.30
3152 4213 8.834004 TGAACACTAGTTAATATGTACTCCCT 57.166 34.615 0.00 0.00 38.30 4.20
3153 4214 8.693625 ACTGAACACTAGTTAATATGTACTCCC 58.306 37.037 0.00 0.00 38.30 4.30
3156 4217 9.367444 GCAACTGAACACTAGTTAATATGTACT 57.633 33.333 0.00 0.00 38.30 2.73
3157 4218 9.146984 TGCAACTGAACACTAGTTAATATGTAC 57.853 33.333 0.00 0.00 38.30 2.90
3186 4247 1.578897 TGTCCAGGCAGGCTGTTATA 58.421 50.000 21.88 6.13 37.29 0.98
3198 4259 1.928868 AAGGCCAAAGATTGTCCAGG 58.071 50.000 5.01 0.00 0.00 4.45
3236 4297 4.956075 TGGATGTGTACTGCTCAGAGATAA 59.044 41.667 0.00 0.00 0.00 1.75
3279 4340 3.810373 CTTCGCGAAGTAACATTTTGCT 58.190 40.909 34.97 0.00 33.65 3.91
3348 4409 7.280876 GCAGTTATATCTGACCACTGAATTTCA 59.719 37.037 13.87 0.00 37.63 2.69
3541 4603 3.830744 TTGAAAAAGAGAGGTGGTCGA 57.169 42.857 0.00 0.00 0.00 4.20
3658 4721 7.017645 CACTCTCAGTACATAATGCAAAACAC 58.982 38.462 0.00 0.00 0.00 3.32
3661 4724 7.361201 GCTTCACTCTCAGTACATAATGCAAAA 60.361 37.037 0.00 0.00 0.00 2.44
3668 4731 6.590234 TGAAGCTTCACTCTCAGTACATAA 57.410 37.500 25.16 0.00 31.01 1.90
3671 4734 4.814147 CATGAAGCTTCACTCTCAGTACA 58.186 43.478 30.66 4.88 40.49 2.90
3672 4735 3.616379 GCATGAAGCTTCACTCTCAGTAC 59.384 47.826 30.66 4.90 40.49 2.73
3719 4784 2.077687 ACATGCAGATTTCATCCCCC 57.922 50.000 0.00 0.00 0.00 5.40
3720 4785 3.953612 TGTAACATGCAGATTTCATCCCC 59.046 43.478 0.00 0.00 0.00 4.81
3721 4786 4.641989 ACTGTAACATGCAGATTTCATCCC 59.358 41.667 5.90 0.00 37.40 3.85
3722 4787 5.824904 ACTGTAACATGCAGATTTCATCC 57.175 39.130 5.90 0.00 37.40 3.51
3723 4788 8.400947 ACAATACTGTAACATGCAGATTTCATC 58.599 33.333 5.90 0.00 37.40 2.92
3724 4789 8.284945 ACAATACTGTAACATGCAGATTTCAT 57.715 30.769 5.90 0.00 37.40 2.57
3725 4790 7.686438 ACAATACTGTAACATGCAGATTTCA 57.314 32.000 5.90 0.00 37.40 2.69
3726 4791 8.883731 ACTACAATACTGTAACATGCAGATTTC 58.116 33.333 5.90 0.00 37.58 2.17
3727 4792 8.668353 CACTACAATACTGTAACATGCAGATTT 58.332 33.333 5.90 0.00 37.58 2.17
3728 4793 8.040727 TCACTACAATACTGTAACATGCAGATT 58.959 33.333 5.90 0.00 37.58 2.40
3729 4794 7.555965 TCACTACAATACTGTAACATGCAGAT 58.444 34.615 5.90 0.00 37.58 2.90
3730 4795 6.930731 TCACTACAATACTGTAACATGCAGA 58.069 36.000 5.90 0.00 37.58 4.26
3731 4796 7.776933 ATCACTACAATACTGTAACATGCAG 57.223 36.000 0.00 0.00 37.58 4.41
3732 4797 9.830975 ATAATCACTACAATACTGTAACATGCA 57.169 29.630 0.00 0.00 37.58 3.96
4003 5068 4.660789 AAGAACACTTTGCATGAAGCTT 57.339 36.364 0.00 0.00 45.94 3.74
4004 5069 4.660789 AAAGAACACTTTGCATGAAGCT 57.339 36.364 0.00 0.00 45.94 3.74
4005 5070 5.723492 AAAAAGAACACTTTGCATGAAGC 57.277 34.783 0.00 0.00 45.96 3.86
4170 5236 3.270027 TGAACAAATATCAGGCCGTCTG 58.730 45.455 0.00 0.00 44.68 3.51
4171 5237 3.627395 TGAACAAATATCAGGCCGTCT 57.373 42.857 0.00 0.00 0.00 4.18
4172 5238 3.938963 TCTTGAACAAATATCAGGCCGTC 59.061 43.478 0.00 0.00 0.00 4.79
4173 5239 3.689649 GTCTTGAACAAATATCAGGCCGT 59.310 43.478 0.00 0.00 0.00 5.68
4174 5240 3.065371 GGTCTTGAACAAATATCAGGCCG 59.935 47.826 0.00 0.00 0.00 6.13
4175 5241 4.016444 TGGTCTTGAACAAATATCAGGCC 58.984 43.478 0.00 0.00 0.00 5.19
4176 5242 4.142381 GGTGGTCTTGAACAAATATCAGGC 60.142 45.833 0.00 0.00 0.00 4.85
4187 5513 4.338379 AACTACAGAGGTGGTCTTGAAC 57.662 45.455 0.00 0.00 37.81 3.18
4194 5520 3.494332 AGTACGAAACTACAGAGGTGGT 58.506 45.455 0.00 0.00 40.87 4.16
4214 5540 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4215 5541 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4216 5542 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4217 5543 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4218 5544 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4219 5545 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4220 5546 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4221 5547 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4222 5548 5.470845 CTTGATGACAAGTATTTCCGGAC 57.529 43.478 1.83 0.00 45.73 4.79
4234 5560 7.181361 TCCCCTTTTATTCATCTTGATGACAA 58.819 34.615 12.28 7.53 34.65 3.18
4235 5561 6.730447 TCCCCTTTTATTCATCTTGATGACA 58.270 36.000 12.28 5.64 0.00 3.58
4236 5562 7.286316 ACATCCCCTTTTATTCATCTTGATGAC 59.714 37.037 12.28 0.00 32.39 3.06
4237 5563 7.356680 ACATCCCCTTTTATTCATCTTGATGA 58.643 34.615 9.02 9.02 32.39 2.92
4238 5564 7.592885 ACATCCCCTTTTATTCATCTTGATG 57.407 36.000 4.35 4.35 33.80 3.07
4239 5565 9.525826 GATACATCCCCTTTTATTCATCTTGAT 57.474 33.333 0.00 0.00 0.00 2.57
4240 5566 8.727149 AGATACATCCCCTTTTATTCATCTTGA 58.273 33.333 0.00 0.00 0.00 3.02
4241 5567 8.930846 AGATACATCCCCTTTTATTCATCTTG 57.069 34.615 0.00 0.00 0.00 3.02
4243 5569 9.621239 TCTAGATACATCCCCTTTTATTCATCT 57.379 33.333 0.00 0.00 0.00 2.90
4246 5572 9.170890 ACATCTAGATACATCCCCTTTTATTCA 57.829 33.333 4.54 0.00 0.00 2.57
4254 5580 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
4278 5604 8.778059 TGGATAAAAATGGGTGTATCTAGAACT 58.222 33.333 0.00 0.00 0.00 3.01
4279 5605 8.974060 TGGATAAAAATGGGTGTATCTAGAAC 57.026 34.615 0.00 0.00 0.00 3.01
4284 5610 9.265862 TCAAAATGGATAAAAATGGGTGTATCT 57.734 29.630 0.00 0.00 0.00 1.98
4286 5612 9.835389 CATCAAAATGGATAAAAATGGGTGTAT 57.165 29.630 0.00 0.00 0.00 2.29
4287 5613 9.040259 TCATCAAAATGGATAAAAATGGGTGTA 57.960 29.630 0.00 0.00 33.42 2.90
4288 5614 7.823799 GTCATCAAAATGGATAAAAATGGGTGT 59.176 33.333 0.00 0.00 33.42 4.16
4289 5615 7.823310 TGTCATCAAAATGGATAAAAATGGGTG 59.177 33.333 0.00 0.00 33.42 4.61
4290 5616 7.915930 TGTCATCAAAATGGATAAAAATGGGT 58.084 30.769 0.00 0.00 33.42 4.51
4291 5617 8.789825 TTGTCATCAAAATGGATAAAAATGGG 57.210 30.769 0.00 0.00 33.42 4.00
4292 5618 9.439500 ACTTGTCATCAAAATGGATAAAAATGG 57.561 29.630 0.00 0.00 33.42 3.16
4299 5625 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
4300 5626 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
4301 5627 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
4302 5628 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
4303 5629 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4304 5630 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4305 5631 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4306 5632 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4307 5633 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4308 5634 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4309 5635 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4310 5636 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4311 5637 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4312 5638 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4313 5639 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4314 5640 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4315 5641 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4316 5642 1.047034 CCCCTCCGTCCGGAAATACT 61.047 60.000 5.23 0.00 44.66 2.12
4317 5643 1.332889 ACCCCTCCGTCCGGAAATAC 61.333 60.000 5.23 0.00 44.66 1.89
4318 5644 0.618393 AACCCCTCCGTCCGGAAATA 60.618 55.000 5.23 0.00 44.66 1.40
4319 5645 0.618393 TAACCCCTCCGTCCGGAAAT 60.618 55.000 5.23 0.00 44.66 2.17
4320 5646 0.618393 ATAACCCCTCCGTCCGGAAA 60.618 55.000 5.23 0.00 44.66 3.13
4321 5647 1.002017 ATAACCCCTCCGTCCGGAA 59.998 57.895 5.23 0.00 44.66 4.30
4322 5648 1.456331 GATAACCCCTCCGTCCGGA 60.456 63.158 0.00 0.00 42.90 5.14
4323 5649 1.119574 ATGATAACCCCTCCGTCCGG 61.120 60.000 0.00 0.00 0.00 5.14
4324 5650 0.756903 AATGATAACCCCTCCGTCCG 59.243 55.000 0.00 0.00 0.00 4.79
4325 5651 3.236896 TCTAATGATAACCCCTCCGTCC 58.763 50.000 0.00 0.00 0.00 4.79
4326 5652 3.258622 CCTCTAATGATAACCCCTCCGTC 59.741 52.174 0.00 0.00 0.00 4.79
4327 5653 3.116862 TCCTCTAATGATAACCCCTCCGT 60.117 47.826 0.00 0.00 0.00 4.69
4328 5654 3.507411 TCCTCTAATGATAACCCCTCCG 58.493 50.000 0.00 0.00 0.00 4.63
4329 5655 4.658901 TGTTCCTCTAATGATAACCCCTCC 59.341 45.833 0.00 0.00 0.00 4.30
4330 5656 5.602978 TCTGTTCCTCTAATGATAACCCCTC 59.397 44.000 0.00 0.00 0.00 4.30
4331 5657 5.538877 TCTGTTCCTCTAATGATAACCCCT 58.461 41.667 0.00 0.00 0.00 4.79
4332 5658 5.888982 TCTGTTCCTCTAATGATAACCCC 57.111 43.478 0.00 0.00 0.00 4.95
4333 5659 6.099845 TCCTTCTGTTCCTCTAATGATAACCC 59.900 42.308 0.00 0.00 0.00 4.11
4334 5660 7.125792 TCCTTCTGTTCCTCTAATGATAACC 57.874 40.000 0.00 0.00 0.00 2.85
4335 5661 8.261522 AGTTCCTTCTGTTCCTCTAATGATAAC 58.738 37.037 0.00 0.00 0.00 1.89
4427 5755 7.873719 ATCATGATATCCACGTTGGTTTTAA 57.126 32.000 6.36 0.00 39.03 1.52
4444 5773 9.393512 GGCTGATATTTAAAGAGCTATCATGAT 57.606 33.333 13.81 13.81 31.97 2.45
4480 5809 3.681593 TCATAAACCCAAGTACTGTGGC 58.318 45.455 14.96 0.00 34.56 5.01
4519 5848 4.056050 GTGTCATGTGATTATCCGTACCC 58.944 47.826 0.00 0.00 0.00 3.69
4592 5922 3.077359 GTCTCAGCCAAGCATAACAGTT 58.923 45.455 0.00 0.00 0.00 3.16
4598 5928 0.740868 GTGCGTCTCAGCCAAGCATA 60.741 55.000 0.00 0.00 40.11 3.14
4637 5967 2.173519 CAGGCCAAGACCAATGACAAT 58.826 47.619 5.01 0.00 0.00 2.71
4753 6083 5.012871 AGCATGATCTACATAATGGCAGAGT 59.987 40.000 0.00 0.00 37.46 3.24
4761 6091 8.959548 TCACAACAAAAGCATGATCTACATAAT 58.040 29.630 0.00 0.00 37.46 1.28
4835 6165 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
4836 6166 6.944862 TCTATATTTAGGAACGGAGGGAGTAC 59.055 42.308 0.00 0.00 0.00 2.73
4837 6167 7.095183 TCTATATTTAGGAACGGAGGGAGTA 57.905 40.000 0.00 0.00 0.00 2.59
4838 6168 5.961897 TCTATATTTAGGAACGGAGGGAGT 58.038 41.667 0.00 0.00 0.00 3.85
4839 6169 6.893005 AGATCTATATTTAGGAACGGAGGGAG 59.107 42.308 0.00 0.00 0.00 4.30
4840 6170 6.801953 AGATCTATATTTAGGAACGGAGGGA 58.198 40.000 0.00 0.00 0.00 4.20
4841 6171 7.483580 AAGATCTATATTTAGGAACGGAGGG 57.516 40.000 0.00 0.00 0.00 4.30
4842 6172 8.808092 AGAAAGATCTATATTTAGGAACGGAGG 58.192 37.037 0.00 0.00 32.88 4.30
4857 6187 9.829507 CCTGTTGAAATCACTAGAAAGATCTAT 57.170 33.333 0.00 0.00 37.52 1.98
4858 6188 8.816894 ACCTGTTGAAATCACTAGAAAGATCTA 58.183 33.333 0.00 0.00 37.10 1.98
4859 6189 7.605691 CACCTGTTGAAATCACTAGAAAGATCT 59.394 37.037 0.00 0.00 39.82 2.75
4860 6190 7.604164 TCACCTGTTGAAATCACTAGAAAGATC 59.396 37.037 0.00 0.00 0.00 2.75
4861 6191 7.389053 GTCACCTGTTGAAATCACTAGAAAGAT 59.611 37.037 0.00 0.00 35.39 2.40
4862 6192 6.706270 GTCACCTGTTGAAATCACTAGAAAGA 59.294 38.462 0.00 0.00 35.39 2.52
4863 6193 6.708054 AGTCACCTGTTGAAATCACTAGAAAG 59.292 38.462 0.00 0.00 35.39 2.62
4864 6194 6.591935 AGTCACCTGTTGAAATCACTAGAAA 58.408 36.000 0.00 0.00 35.39 2.52
4865 6195 6.174720 AGTCACCTGTTGAAATCACTAGAA 57.825 37.500 0.00 0.00 35.39 2.10
4866 6196 5.808366 AGTCACCTGTTGAAATCACTAGA 57.192 39.130 0.00 0.00 35.39 2.43
4867 6197 6.455647 TGTAGTCACCTGTTGAAATCACTAG 58.544 40.000 0.00 0.00 35.39 2.57
4868 6198 6.413783 TGTAGTCACCTGTTGAAATCACTA 57.586 37.500 0.00 0.00 35.39 2.74
4869 6199 5.290493 TGTAGTCACCTGTTGAAATCACT 57.710 39.130 0.00 0.00 35.39 3.41
4870 6200 6.183360 CGTATGTAGTCACCTGTTGAAATCAC 60.183 42.308 0.00 0.00 35.39 3.06
4871 6201 5.867174 CGTATGTAGTCACCTGTTGAAATCA 59.133 40.000 0.00 0.00 35.39 2.57
4872 6202 5.291128 CCGTATGTAGTCACCTGTTGAAATC 59.709 44.000 0.00 0.00 35.39 2.17
4873 6203 5.046878 TCCGTATGTAGTCACCTGTTGAAAT 60.047 40.000 0.00 0.00 35.39 2.17
4874 6204 4.281435 TCCGTATGTAGTCACCTGTTGAAA 59.719 41.667 0.00 0.00 35.39 2.69
4875 6205 3.827876 TCCGTATGTAGTCACCTGTTGAA 59.172 43.478 0.00 0.00 35.39 2.69
4876 6206 3.423749 TCCGTATGTAGTCACCTGTTGA 58.576 45.455 0.00 0.00 0.00 3.18
4877 6207 3.192844 ACTCCGTATGTAGTCACCTGTTG 59.807 47.826 0.00 0.00 0.00 3.33
4878 6208 3.428532 ACTCCGTATGTAGTCACCTGTT 58.571 45.455 0.00 0.00 0.00 3.16
4879 6209 3.083122 ACTCCGTATGTAGTCACCTGT 57.917 47.619 0.00 0.00 0.00 4.00
4880 6210 5.571784 TTTACTCCGTATGTAGTCACCTG 57.428 43.478 0.00 0.00 0.00 4.00
4881 6211 6.379133 TCATTTTACTCCGTATGTAGTCACCT 59.621 38.462 0.00 0.00 0.00 4.00
4882 6212 6.567050 TCATTTTACTCCGTATGTAGTCACC 58.433 40.000 0.00 0.00 0.00 4.02
4883 6213 7.220300 CACTCATTTTACTCCGTATGTAGTCAC 59.780 40.741 0.00 0.00 0.00 3.67
4884 6214 7.121611 TCACTCATTTTACTCCGTATGTAGTCA 59.878 37.037 0.00 0.00 0.00 3.41
4885 6215 7.478322 TCACTCATTTTACTCCGTATGTAGTC 58.522 38.462 0.00 0.00 0.00 2.59
4886 6216 7.400599 TCACTCATTTTACTCCGTATGTAGT 57.599 36.000 0.00 0.00 0.00 2.73
4887 6217 8.873215 ATTCACTCATTTTACTCCGTATGTAG 57.127 34.615 0.00 0.00 0.00 2.74
4888 6218 8.692710 AGATTCACTCATTTTACTCCGTATGTA 58.307 33.333 0.00 0.00 0.00 2.29
4889 6219 7.556844 AGATTCACTCATTTTACTCCGTATGT 58.443 34.615 0.00 0.00 0.00 2.29
4890 6220 9.698309 ATAGATTCACTCATTTTACTCCGTATG 57.302 33.333 0.00 0.00 0.00 2.39
4893 6223 9.530633 GTTATAGATTCACTCATTTTACTCCGT 57.469 33.333 0.00 0.00 0.00 4.69
4894 6224 8.979574 GGTTATAGATTCACTCATTTTACTCCG 58.020 37.037 0.00 0.00 0.00 4.63
4925 6255 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
4927 6257 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
4928 6258 8.866970 TTACCACATACGGATGTATATAGACA 57.133 34.615 14.23 2.07 44.82 3.41
4929 6259 9.947669 GATTACCACATACGGATGTATATAGAC 57.052 37.037 14.23 0.00 44.82 2.59
4930 6260 9.916360 AGATTACCACATACGGATGTATATAGA 57.084 33.333 14.23 0.00 44.82 1.98
4935 6265 9.653287 CAAATAGATTACCACATACGGATGTAT 57.347 33.333 14.23 7.46 44.82 2.29
4936 6266 8.862085 TCAAATAGATTACCACATACGGATGTA 58.138 33.333 14.23 0.00 44.82 2.29
4938 6268 8.601845 TTCAAATAGATTACCACATACGGATG 57.398 34.615 5.94 5.94 39.16 3.51
4939 6269 9.793259 ATTTCAAATAGATTACCACATACGGAT 57.207 29.630 0.00 0.00 0.00 4.18
4940 6270 9.268268 GATTTCAAATAGATTACCACATACGGA 57.732 33.333 0.00 0.00 0.00 4.69
4941 6271 9.273016 AGATTTCAAATAGATTACCACATACGG 57.727 33.333 0.00 0.00 0.00 4.02
4970 6300 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4971 6301 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4972 6302 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4973 6303 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4974 6304 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4975 6305 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4976 6306 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4977 6307 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4978 6308 7.529555 TCTACTCCCTCCGTTCCTAAATATAA 58.470 38.462 0.00 0.00 0.00 0.98
4979 6309 7.095183 TCTACTCCCTCCGTTCCTAAATATA 57.905 40.000 0.00 0.00 0.00 0.86
4980 6310 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
4981 6311 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
4982 6312 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
4983 6313 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
4984 6314 3.967467 ATCTACTCCCTCCGTTCCTAA 57.033 47.619 0.00 0.00 0.00 2.69
4985 6315 3.967467 AATCTACTCCCTCCGTTCCTA 57.033 47.619 0.00 0.00 0.00 2.94
4986 6316 2.850695 AATCTACTCCCTCCGTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
4987 6317 3.564264 ACTAATCTACTCCCTCCGTTCC 58.436 50.000 0.00 0.00 0.00 3.62
4988 6318 4.401837 ACAACTAATCTACTCCCTCCGTTC 59.598 45.833 0.00 0.00 0.00 3.95
4989 6319 4.159879 CACAACTAATCTACTCCCTCCGTT 59.840 45.833 0.00 0.00 0.00 4.44
4990 6320 3.700038 CACAACTAATCTACTCCCTCCGT 59.300 47.826 0.00 0.00 0.00 4.69
4991 6321 3.700038 ACACAACTAATCTACTCCCTCCG 59.300 47.826 0.00 0.00 0.00 4.63
4992 6322 5.678955 AACACAACTAATCTACTCCCTCC 57.321 43.478 0.00 0.00 0.00 4.30
4993 6323 9.152595 CTTAAAACACAACTAATCTACTCCCTC 57.847 37.037 0.00 0.00 0.00 4.30
4994 6324 8.657712 ACTTAAAACACAACTAATCTACTCCCT 58.342 33.333 0.00 0.00 0.00 4.20
4995 6325 8.843885 ACTTAAAACACAACTAATCTACTCCC 57.156 34.615 0.00 0.00 0.00 4.30
5084 6535 1.767036 CCACCCCTGTTCCACATCA 59.233 57.895 0.00 0.00 0.00 3.07
5378 6835 5.152193 TCCACCGGATCCTCAAATATAGAA 58.848 41.667 9.46 0.00 0.00 2.10
5404 6861 0.877071 AGCAAAGTCATGGCACTTCG 59.123 50.000 0.00 0.00 35.45 3.79
5764 7221 8.834004 AGTTGGCGTATCTCCCTTATTATATA 57.166 34.615 0.00 0.00 0.00 0.86
5765 7222 7.735326 AGTTGGCGTATCTCCCTTATTATAT 57.265 36.000 0.00 0.00 0.00 0.86
5782 7241 2.050691 GCAAATGTGTACAAGTTGGCG 58.949 47.619 7.96 0.00 0.00 5.69
5806 7265 5.412594 GTGATCCAGTGAGCAACAATAGAAA 59.587 40.000 0.00 0.00 38.90 2.52
5811 7270 3.430042 AGTGATCCAGTGAGCAACAAT 57.570 42.857 0.00 0.00 38.90 2.71
5899 7360 0.337082 TACAGCACTAGCCCCTGGTA 59.663 55.000 9.00 0.00 43.56 3.25
5900 7361 0.546747 TTACAGCACTAGCCCCTGGT 60.547 55.000 9.00 0.00 43.56 4.00
6002 7463 2.575735 TGACATTGATGGTCTAAGCCCA 59.424 45.455 0.00 0.00 36.26 5.36
6125 7586 0.530870 GGTACTGCGCAATCTCCTCC 60.531 60.000 13.05 3.65 0.00 4.30
6182 7643 0.460811 GTGCCATCAGTCGCTCATCA 60.461 55.000 0.00 0.00 0.00 3.07
6257 7718 2.112297 TCGTTTGGCTCGGGCTTT 59.888 55.556 7.48 0.00 38.73 3.51
6290 7751 3.771160 CCTTCGGAGTCCACCCCG 61.771 72.222 10.49 0.00 46.57 5.73
6407 7868 1.076777 AATGCGGGGGAGGTTCATG 60.077 57.895 0.00 0.00 0.00 3.07
6466 7927 2.275318 GGAATCAGCTTCAGTTCTCGG 58.725 52.381 0.00 0.00 35.41 4.63
6467 7928 1.923204 CGGAATCAGCTTCAGTTCTCG 59.077 52.381 0.00 0.00 35.41 4.04
6468 7929 3.119316 TCTCGGAATCAGCTTCAGTTCTC 60.119 47.826 0.00 0.00 35.41 2.87
6469 7930 2.828520 TCTCGGAATCAGCTTCAGTTCT 59.171 45.455 0.00 0.00 35.41 3.01
6470 7931 3.238108 TCTCGGAATCAGCTTCAGTTC 57.762 47.619 0.00 0.00 35.41 3.01
6471 7932 3.007398 AGTTCTCGGAATCAGCTTCAGTT 59.993 43.478 0.00 0.00 35.41 3.16
6472 7933 2.564947 AGTTCTCGGAATCAGCTTCAGT 59.435 45.455 0.00 0.00 35.41 3.41
6473 7934 2.928757 CAGTTCTCGGAATCAGCTTCAG 59.071 50.000 0.00 0.00 35.41 3.02
6474 7935 2.562738 TCAGTTCTCGGAATCAGCTTCA 59.437 45.455 0.00 0.00 35.41 3.02
6475 7936 3.238108 TCAGTTCTCGGAATCAGCTTC 57.762 47.619 0.00 0.00 0.00 3.86
6476 7937 3.594134 CTTCAGTTCTCGGAATCAGCTT 58.406 45.455 0.00 0.00 0.00 3.74
6477 7938 2.676463 GCTTCAGTTCTCGGAATCAGCT 60.676 50.000 0.00 0.00 0.00 4.24
6478 7939 1.663135 GCTTCAGTTCTCGGAATCAGC 59.337 52.381 0.00 0.00 0.00 4.26
6479 7940 2.928757 CAGCTTCAGTTCTCGGAATCAG 59.071 50.000 0.00 0.00 0.00 2.90
6480 7941 2.932622 GCAGCTTCAGTTCTCGGAATCA 60.933 50.000 0.00 0.00 0.00 2.57
6481 7942 1.663135 GCAGCTTCAGTTCTCGGAATC 59.337 52.381 0.00 0.00 0.00 2.52
6482 7943 1.002430 TGCAGCTTCAGTTCTCGGAAT 59.998 47.619 0.00 0.00 0.00 3.01
6483 7944 0.392706 TGCAGCTTCAGTTCTCGGAA 59.607 50.000 0.00 0.00 0.00 4.30
6484 7945 0.319900 GTGCAGCTTCAGTTCTCGGA 60.320 55.000 0.00 0.00 0.00 4.55
6514 7975 4.749245 ATTTTTACAGCGACTGACTTGG 57.251 40.909 12.77 0.00 35.18 3.61
6681 8143 5.117355 ACGAAATCACAAGTCTCGAGTTA 57.883 39.130 13.13 0.00 33.81 2.24
6683 8145 3.644884 ACGAAATCACAAGTCTCGAGT 57.355 42.857 13.13 0.00 33.81 4.18
6684 8146 3.736252 ACAACGAAATCACAAGTCTCGAG 59.264 43.478 5.93 5.93 33.81 4.04
6685 8147 3.489416 CACAACGAAATCACAAGTCTCGA 59.511 43.478 0.00 0.00 33.81 4.04
6686 8148 3.787826 CACAACGAAATCACAAGTCTCG 58.212 45.455 0.00 0.00 35.68 4.04
6687 8149 3.002246 TGCACAACGAAATCACAAGTCTC 59.998 43.478 0.00 0.00 0.00 3.36
6738 8200 4.274069 CATCACAGACACTTTTGACAACG 58.726 43.478 0.00 0.00 0.00 4.10
6789 8251 4.211389 CCGACAAAACAAACTTCGATCTG 58.789 43.478 0.00 0.00 0.00 2.90
6805 8267 3.442512 TTCGCAACGACCCCGACAA 62.443 57.895 0.00 0.00 39.50 3.18
6823 8285 0.536006 GCAGACCAGAAGCCACAAGT 60.536 55.000 0.00 0.00 0.00 3.16
6842 8304 0.820871 GGTGGCCTAGTCTGACTCAG 59.179 60.000 14.62 8.05 0.00 3.35
6855 8317 1.298014 CTGAGAAGGTGAGGTGGCC 59.702 63.158 0.00 0.00 0.00 5.36
6856 8318 1.376553 GCTGAGAAGGTGAGGTGGC 60.377 63.158 0.00 0.00 0.00 5.01
6857 8319 1.079543 CGCTGAGAAGGTGAGGTGG 60.080 63.158 0.00 0.00 0.00 4.61
6858 8320 1.079543 CCGCTGAGAAGGTGAGGTG 60.080 63.158 0.00 0.00 0.00 4.00
6859 8321 1.534235 ACCGCTGAGAAGGTGAGGT 60.534 57.895 0.00 0.00 39.66 3.85
6874 8336 3.062234 GGAAAGATAAAGCAGTTCGACCG 59.938 47.826 0.00 0.00 0.00 4.79
6875 8337 3.374367 GGGAAAGATAAAGCAGTTCGACC 59.626 47.826 0.00 0.00 0.00 4.79
6876 8338 4.254492 AGGGAAAGATAAAGCAGTTCGAC 58.746 43.478 0.00 0.00 0.00 4.20
6877 8339 4.504858 GAGGGAAAGATAAAGCAGTTCGA 58.495 43.478 0.00 0.00 0.00 3.71
6878 8340 3.307242 CGAGGGAAAGATAAAGCAGTTCG 59.693 47.826 0.00 0.00 0.00 3.95
6879 8341 4.504858 TCGAGGGAAAGATAAAGCAGTTC 58.495 43.478 0.00 0.00 0.00 3.01
6880 8342 4.553330 TCGAGGGAAAGATAAAGCAGTT 57.447 40.909 0.00 0.00 0.00 3.16
6881 8343 4.162320 TCATCGAGGGAAAGATAAAGCAGT 59.838 41.667 0.00 0.00 0.00 4.40
6882 8344 4.697514 TCATCGAGGGAAAGATAAAGCAG 58.302 43.478 0.00 0.00 0.00 4.24
6883 8345 4.753516 TCATCGAGGGAAAGATAAAGCA 57.246 40.909 0.00 0.00 0.00 3.91
6884 8346 5.119694 AGTTCATCGAGGGAAAGATAAAGC 58.880 41.667 0.00 0.00 0.00 3.51
6885 8347 7.982354 AGTAAGTTCATCGAGGGAAAGATAAAG 59.018 37.037 0.00 0.00 0.00 1.85
6886 8348 7.764443 CAGTAAGTTCATCGAGGGAAAGATAAA 59.236 37.037 0.00 0.00 0.00 1.40
6887 8349 7.123697 TCAGTAAGTTCATCGAGGGAAAGATAA 59.876 37.037 0.00 0.00 0.00 1.75
6888 8350 6.605995 TCAGTAAGTTCATCGAGGGAAAGATA 59.394 38.462 0.00 0.00 0.00 1.98
6889 8351 5.422331 TCAGTAAGTTCATCGAGGGAAAGAT 59.578 40.000 0.00 0.00 0.00 2.40
6890 8352 4.770531 TCAGTAAGTTCATCGAGGGAAAGA 59.229 41.667 0.00 0.00 0.00 2.52
6891 8353 5.073311 TCAGTAAGTTCATCGAGGGAAAG 57.927 43.478 0.00 0.00 0.00 2.62
6892 8354 5.046591 ACATCAGTAAGTTCATCGAGGGAAA 60.047 40.000 0.00 0.00 0.00 3.13
6893 8355 4.466370 ACATCAGTAAGTTCATCGAGGGAA 59.534 41.667 0.00 0.00 0.00 3.97
6894 8356 4.023980 ACATCAGTAAGTTCATCGAGGGA 58.976 43.478 0.00 0.00 0.00 4.20
6895 8357 4.363999 GACATCAGTAAGTTCATCGAGGG 58.636 47.826 0.00 0.00 0.00 4.30
6896 8358 4.098654 AGGACATCAGTAAGTTCATCGAGG 59.901 45.833 0.00 0.00 0.00 4.63
6897 8359 5.255710 AGGACATCAGTAAGTTCATCGAG 57.744 43.478 0.00 0.00 0.00 4.04
6898 8360 4.098044 GGAGGACATCAGTAAGTTCATCGA 59.902 45.833 0.00 0.00 0.00 3.59
6899 8361 4.363999 GGAGGACATCAGTAAGTTCATCG 58.636 47.826 0.00 0.00 0.00 3.84
6900 8362 4.098044 TCGGAGGACATCAGTAAGTTCATC 59.902 45.833 0.00 0.00 0.00 2.92
6901 8363 4.023980 TCGGAGGACATCAGTAAGTTCAT 58.976 43.478 0.00 0.00 0.00 2.57
6902 8364 3.192844 GTCGGAGGACATCAGTAAGTTCA 59.807 47.826 0.00 0.00 42.91 3.18
6903 8365 3.771798 GTCGGAGGACATCAGTAAGTTC 58.228 50.000 0.00 0.00 42.91 3.01
6904 8366 3.870633 GTCGGAGGACATCAGTAAGTT 57.129 47.619 0.00 0.00 42.91 2.66
6915 8377 2.743636 TTGATGAGTTGTCGGAGGAC 57.256 50.000 0.00 0.00 43.71 3.85
6916 8378 2.632996 ACTTTGATGAGTTGTCGGAGGA 59.367 45.455 0.00 0.00 0.00 3.71
6917 8379 3.045601 ACTTTGATGAGTTGTCGGAGG 57.954 47.619 0.00 0.00 0.00 4.30
6918 8380 7.096436 CGATATAACTTTGATGAGTTGTCGGAG 60.096 40.741 0.81 0.00 39.99 4.63
6919 8381 6.695713 CGATATAACTTTGATGAGTTGTCGGA 59.304 38.462 0.81 0.00 39.99 4.55
6920 8382 6.475727 ACGATATAACTTTGATGAGTTGTCGG 59.524 38.462 17.53 4.04 40.49 4.79
6921 8383 7.451281 ACGATATAACTTTGATGAGTTGTCG 57.549 36.000 14.45 14.45 39.99 4.35
6926 8388 9.886132 ACCTAAAACGATATAACTTTGATGAGT 57.114 29.630 0.00 0.00 0.00 3.41
6928 8390 9.661563 ACACCTAAAACGATATAACTTTGATGA 57.338 29.630 0.00 0.00 0.00 2.92
6931 8393 9.090692 GCTACACCTAAAACGATATAACTTTGA 57.909 33.333 0.00 0.00 0.00 2.69
6932 8394 8.875803 TGCTACACCTAAAACGATATAACTTTG 58.124 33.333 0.00 0.00 0.00 2.77
6933 8395 9.439500 TTGCTACACCTAAAACGATATAACTTT 57.561 29.630 0.00 0.00 0.00 2.66
6934 8396 9.609346 ATTGCTACACCTAAAACGATATAACTT 57.391 29.630 0.00 0.00 0.00 2.66
6939 8401 7.606456 CCCATATTGCTACACCTAAAACGATAT 59.394 37.037 0.00 0.00 0.00 1.63
6952 8414 3.072915 CCCAGATGACCCATATTGCTACA 59.927 47.826 0.00 0.00 0.00 2.74
6958 8420 7.184862 GGAAATAATCCCAGATGACCCATATT 58.815 38.462 0.00 0.00 43.00 1.28
6962 8424 4.453480 GGAAATAATCCCAGATGACCCA 57.547 45.455 0.00 0.00 43.00 4.51
7021 10912 3.895232 AATCAGATGACCTAAGCACGT 57.105 42.857 0.00 0.00 0.00 4.49
7038 10929 2.224281 TGCCCTCGGTGATCATGTAATC 60.224 50.000 0.00 0.00 0.00 1.75
7122 11599 0.975040 AGCCTCTCTCTCGGTTGCAT 60.975 55.000 0.00 0.00 0.00 3.96
7123 11600 1.599606 GAGCCTCTCTCTCGGTTGCA 61.600 60.000 0.00 0.00 38.78 4.08
7126 11603 1.110442 CATGAGCCTCTCTCTCGGTT 58.890 55.000 0.00 0.00 42.38 4.44
7128 11605 0.754957 ACCATGAGCCTCTCTCTCGG 60.755 60.000 0.00 0.00 42.38 4.63
7129 11606 1.606668 GTACCATGAGCCTCTCTCTCG 59.393 57.143 0.00 0.00 42.38 4.04
7130 11607 2.660572 TGTACCATGAGCCTCTCTCTC 58.339 52.381 0.00 0.00 42.38 3.20
7138 11615 1.473258 TGCCAAATGTACCATGAGCC 58.527 50.000 0.00 0.00 0.00 4.70
7227 11764 0.457853 TTCTCATTCTTCCGACGGCG 60.458 55.000 9.66 1.94 37.24 6.46
7228 11765 1.281899 CTTCTCATTCTTCCGACGGC 58.718 55.000 9.66 0.00 0.00 5.68
7232 11769 1.135139 CGCTCCTTCTCATTCTTCCGA 59.865 52.381 0.00 0.00 0.00 4.55
7292 11829 1.146263 CCACCGTTGCCTATCTCCC 59.854 63.158 0.00 0.00 0.00 4.30
7308 11845 4.687215 GTCAGCTGCTCACCGCCA 62.687 66.667 9.47 0.00 38.05 5.69
7330 11867 7.402650 TCTGTCATTTTCATTTTCCCCCATTAT 59.597 33.333 0.00 0.00 0.00 1.28
7332 11869 5.547276 TCTGTCATTTTCATTTTCCCCCATT 59.453 36.000 0.00 0.00 0.00 3.16
7340 11877 5.335191 GGACGAGCTCTGTCATTTTCATTTT 60.335 40.000 27.76 0.59 38.10 1.82
7373 12040 1.211703 TCTTTTGTGTGGCTCCAGTCA 59.788 47.619 0.00 0.00 0.00 3.41
7454 12170 1.758122 GAAATTGGATGGGCCCGCT 60.758 57.895 19.37 6.88 34.97 5.52
7465 12181 0.385473 AACGTTCGCGCAGAAATTGG 60.385 50.000 8.75 5.37 46.04 3.16
7466 12182 0.697010 CAACGTTCGCGCAGAAATTG 59.303 50.000 8.75 14.77 46.04 2.32
7467 12183 0.385473 CCAACGTTCGCGCAGAAATT 60.385 50.000 8.75 7.44 46.04 1.82
7468 12184 1.206578 CCAACGTTCGCGCAGAAAT 59.793 52.632 8.75 1.46 46.04 2.17
7469 12185 2.629210 CCAACGTTCGCGCAGAAA 59.371 55.556 8.75 0.00 46.04 2.52
7470 12186 4.007940 GCCAACGTTCGCGCAGAA 62.008 61.111 8.75 9.50 46.04 3.02
7471 12187 4.961511 AGCCAACGTTCGCGCAGA 62.962 61.111 12.26 2.49 46.04 4.26
7472 12188 4.430423 GAGCCAACGTTCGCGCAG 62.430 66.667 15.91 0.00 46.04 5.18
7473 12189 2.829043 ATAGAGCCAACGTTCGCGCA 62.829 55.000 21.75 9.65 46.04 6.09
7474 12190 2.078958 GATAGAGCCAACGTTCGCGC 62.079 60.000 13.28 13.28 46.04 6.86
7485 12201 2.042686 TGCCATGTTGTGATAGAGCC 57.957 50.000 0.00 0.00 0.00 4.70
7489 12205 4.517952 TGGTTTTGCCATGTTGTGATAG 57.482 40.909 0.00 0.00 43.61 2.08
7501 12217 7.546778 TGAAAATTTTACTTCTGGTTTTGCC 57.453 32.000 2.75 0.00 37.90 4.52
7549 12685 9.717942 ATTTTAGCTATAACAACATGGCAAAAA 57.282 25.926 0.00 0.00 35.04 1.94
7555 12759 7.264221 TGGCAATTTTAGCTATAACAACATGG 58.736 34.615 0.00 0.00 0.00 3.66
7561 12765 8.526667 TTACCATGGCAATTTTAGCTATAACA 57.473 30.769 13.04 0.00 31.60 2.41
7562 12766 9.810545 TTTTACCATGGCAATTTTAGCTATAAC 57.189 29.630 13.04 0.00 31.60 1.89
7567 12771 9.732130 TTTTATTTTACCATGGCAATTTTAGCT 57.268 25.926 13.04 0.00 0.00 3.32
7653 12857 5.802956 ACCATGGCAAATTATAACGAAAACG 59.197 36.000 13.04 0.00 0.00 3.60
7680 12884 4.621068 TTTTGCACATACTAGCTCATGC 57.379 40.909 0.00 0.00 40.05 4.06
7715 12919 0.182061 ATATGTGCACAGCTCAGGGG 59.818 55.000 25.84 0.00 35.55 4.79
7720 12924 6.183360 GCAAAGTTTAAATATGTGCACAGCTC 60.183 38.462 25.84 9.10 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.