Multiple sequence alignment - TraesCS7A01G150800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G150800 chr7A 100.000 2204 0 0 1 2204 104326317 104324114 0.000000e+00 4071
1 TraesCS7A01G150800 chr7A 93.645 1904 76 24 1 1901 104341047 104339186 0.000000e+00 2804
2 TraesCS7A01G150800 chr7A 95.480 1239 54 2 663 1901 586293467 586294703 0.000000e+00 1977
3 TraesCS7A01G150800 chr7A 91.886 986 58 10 919 1902 200364420 200363455 0.000000e+00 1358
4 TraesCS7A01G150800 chr7A 94.712 851 43 2 654 1504 104347442 104346594 0.000000e+00 1321
5 TraesCS7A01G150800 chr7A 96.051 785 30 1 1004 1788 586301147 586301930 0.000000e+00 1277
6 TraesCS7A01G150800 chr7A 93.750 576 28 8 1329 1901 200472851 200472281 0.000000e+00 857
7 TraesCS7A01G150800 chr7A 88.754 658 30 12 1 657 104356774 104356160 0.000000e+00 765
8 TraesCS7A01G150800 chr7A 92.781 471 25 6 6 468 586300278 586300747 0.000000e+00 673
9 TraesCS7A01G150800 chr7A 93.473 429 24 3 1 427 586291540 586291966 3.090000e-178 634
10 TraesCS7A01G150800 chr7A 89.662 474 38 9 474 944 586300681 586301146 5.240000e-166 593
11 TraesCS7A01G150800 chr7A 95.738 305 12 1 1901 2204 173104490 173104794 7.070000e-135 490
12 TraesCS7A01G150800 chr7A 78.909 275 46 12 37 304 562326908 562327177 2.250000e-40 176
13 TraesCS7A01G150800 chr5A 95.318 1431 60 7 474 1901 241757148 241755722 0.000000e+00 2265
14 TraesCS7A01G150800 chr5A 94.363 1437 67 7 475 1901 241764618 241763186 0.000000e+00 2193
15 TraesCS7A01G150800 chr5A 96.066 305 9 3 1902 2204 229973410 229973713 5.470000e-136 494
16 TraesCS7A01G150800 chr4A 93.422 973 58 6 933 1901 326014056 326013086 0.000000e+00 1437
17 TraesCS7A01G150800 chr4A 96.053 304 11 1 1902 2204 536748620 536748317 5.470000e-136 494
18 TraesCS7A01G150800 chr4A 95.738 305 11 2 1902 2204 621079606 621079302 7.070000e-135 490
19 TraesCS7A01G150800 chr1A 89.841 1132 79 12 9 1137 251996559 251997657 0.000000e+00 1421
20 TraesCS7A01G150800 chr1A 95.926 761 30 1 1143 1903 252020712 252021471 0.000000e+00 1232
21 TraesCS7A01G150800 chr1A 95.710 303 13 0 1902 2204 126885639 126885941 2.540000e-134 488
22 TraesCS7A01G150800 chr1A 95.724 304 12 1 1902 2204 506237752 506237449 2.540000e-134 488
23 TraesCS7A01G150800 chr3A 88.584 473 45 7 1 471 320612102 320611637 1.140000e-157 566
24 TraesCS7A01G150800 chr3A 88.437 467 51 2 1 464 320604006 320603540 5.310000e-156 560
25 TraesCS7A01G150800 chr3A 95.738 305 11 1 1902 2204 635736401 635736705 7.070000e-135 490
26 TraesCS7A01G150800 chr3A 91.018 334 28 2 933 1265 171625163 171625495 1.200000e-122 449
27 TraesCS7A01G150800 chr3A 80.972 494 58 26 474 942 320611700 320611218 2.080000e-95 359
28 TraesCS7A01G150800 chr3A 91.549 71 6 0 1 71 466976532 466976602 5.010000e-17 99
29 TraesCS7A01G150800 chr6A 91.832 404 28 5 9 409 214043182 214043583 1.910000e-155 558
30 TraesCS7A01G150800 chr6A 96.053 304 11 1 1902 2204 476338805 476338502 5.470000e-136 494
31 TraesCS7A01G150800 chr2A 96.053 304 10 2 1902 2204 83865972 83866274 5.470000e-136 494
32 TraesCS7A01G150800 chr2A 83.065 496 53 27 485 955 210053942 210054431 2.620000e-114 422


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G150800 chr7A 104324114 104326317 2203 True 4071.000000 4071 100.000000 1 2204 1 chr7A.!!$R1 2203
1 TraesCS7A01G150800 chr7A 104339186 104341047 1861 True 2804.000000 2804 93.645000 1 1901 1 chr7A.!!$R2 1900
2 TraesCS7A01G150800 chr7A 200363455 200364420 965 True 1358.000000 1358 91.886000 919 1902 1 chr7A.!!$R5 983
3 TraesCS7A01G150800 chr7A 104346594 104347442 848 True 1321.000000 1321 94.712000 654 1504 1 chr7A.!!$R3 850
4 TraesCS7A01G150800 chr7A 586291540 586294703 3163 False 1305.500000 1977 94.476500 1 1901 2 chr7A.!!$F3 1900
5 TraesCS7A01G150800 chr7A 200472281 200472851 570 True 857.000000 857 93.750000 1329 1901 1 chr7A.!!$R6 572
6 TraesCS7A01G150800 chr7A 586300278 586301930 1652 False 847.666667 1277 92.831333 6 1788 3 chr7A.!!$F4 1782
7 TraesCS7A01G150800 chr7A 104356160 104356774 614 True 765.000000 765 88.754000 1 657 1 chr7A.!!$R4 656
8 TraesCS7A01G150800 chr5A 241755722 241757148 1426 True 2265.000000 2265 95.318000 474 1901 1 chr5A.!!$R1 1427
9 TraesCS7A01G150800 chr5A 241763186 241764618 1432 True 2193.000000 2193 94.363000 475 1901 1 chr5A.!!$R2 1426
10 TraesCS7A01G150800 chr4A 326013086 326014056 970 True 1437.000000 1437 93.422000 933 1901 1 chr4A.!!$R1 968
11 TraesCS7A01G150800 chr1A 251996559 251997657 1098 False 1421.000000 1421 89.841000 9 1137 1 chr1A.!!$F2 1128
12 TraesCS7A01G150800 chr1A 252020712 252021471 759 False 1232.000000 1232 95.926000 1143 1903 1 chr1A.!!$F3 760
13 TraesCS7A01G150800 chr3A 320611218 320612102 884 True 462.500000 566 84.778000 1 942 2 chr3A.!!$R2 941

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 455 0.094558 CACACACACACACACACGAC 59.905 55.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1992 3592 0.459934 CTCTGCTTCCCTCTGCGAAG 60.46 60.0 0.0 0.0 39.82 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 171 5.244785 CTATCCTAGCTTGTGTGTACGAA 57.755 43.478 0.00 0.00 0.00 3.85
223 226 5.897250 TCAAGGGCTGACTAGTCAACATATA 59.103 40.000 25.14 8.87 39.39 0.86
240 243 9.961264 TCAACATATAAACAATGTAAGTGGGTA 57.039 29.630 0.00 0.00 35.33 3.69
354 358 9.710818 AGTACTAATTGATCCAAGACCTAAGTA 57.289 33.333 0.00 0.00 0.00 2.24
402 420 3.014369 GTGCACACACAACACACAC 57.986 52.632 13.17 0.00 46.61 3.82
403 421 0.239613 GTGCACACACAACACACACA 59.760 50.000 13.17 0.00 46.61 3.72
404 422 0.239613 TGCACACACAACACACACAC 59.760 50.000 0.00 0.00 0.00 3.82
405 423 0.239613 GCACACACAACACACACACA 59.760 50.000 0.00 0.00 0.00 3.72
406 424 1.962412 CACACACAACACACACACAC 58.038 50.000 0.00 0.00 0.00 3.82
407 425 1.265365 CACACACAACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
408 426 1.265635 ACACACAACACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
409 427 1.265365 CACACAACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
410 428 1.265635 ACACAACACACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
411 429 1.265365 CACAACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
412 430 1.265635 ACAACACACACACACACACAC 59.734 47.619 0.00 0.00 0.00 3.82
413 431 1.265365 CAACACACACACACACACACA 59.735 47.619 0.00 0.00 0.00 3.72
414 432 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
415 433 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
416 434 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
417 435 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
418 436 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
419 437 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
420 438 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
421 439 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
422 440 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
423 441 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
424 442 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
425 443 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
426 444 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
427 445 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
428 446 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
429 447 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
430 448 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
431 449 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
432 450 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
433 451 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
434 452 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
435 453 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
436 454 0.319986 ACACACACACACACACACGA 60.320 50.000 0.00 0.00 0.00 4.35
437 455 0.094558 CACACACACACACACACGAC 59.905 55.000 0.00 0.00 0.00 4.34
438 456 0.319986 ACACACACACACACACGACA 60.320 50.000 0.00 0.00 0.00 4.35
439 457 0.094558 CACACACACACACACGACAC 59.905 55.000 0.00 0.00 0.00 3.67
440 458 0.319986 ACACACACACACACGACACA 60.320 50.000 0.00 0.00 0.00 3.72
441 459 0.094558 CACACACACACACGACACAC 59.905 55.000 0.00 0.00 0.00 3.82
443 461 2.319707 CACACACACGACACACGC 59.680 61.111 0.00 0.00 46.94 5.34
444 462 3.251763 ACACACACGACACACGCG 61.252 61.111 3.53 3.53 46.94 6.01
445 463 4.627114 CACACACGACACACGCGC 62.627 66.667 5.73 0.00 46.94 6.86
454 472 4.851114 CACACGCGCGCTGCATAC 62.851 66.667 32.58 0.00 46.97 2.39
456 474 4.271170 CACGCGCGCTGCATACTC 62.271 66.667 32.58 0.00 46.97 2.59
462 480 2.280389 CGCTGCATACTCGGCCAT 60.280 61.111 2.24 0.00 34.96 4.40
463 481 2.601398 CGCTGCATACTCGGCCATG 61.601 63.158 2.24 0.00 34.96 3.66
464 482 2.256591 GCTGCATACTCGGCCATGG 61.257 63.158 7.63 7.63 32.32 3.66
465 483 2.203195 TGCATACTCGGCCATGGC 60.203 61.111 29.47 29.47 41.06 4.40
1243 2839 2.139382 GATGGGGAAAGAGAGGGGATT 58.861 52.381 0.00 0.00 0.00 3.01
1427 3024 4.286032 TGGACTTTAGACTGTAGCATTGGT 59.714 41.667 0.00 0.00 0.00 3.67
1439 3036 5.754782 TGTAGCATTGGTCCATAAGTGAAT 58.245 37.500 0.00 0.00 0.00 2.57
1903 3503 5.505654 GCAAGATTATCGGGGTGTTACATTG 60.506 44.000 0.00 0.00 0.00 2.82
1904 3504 5.367945 AGATTATCGGGGTGTTACATTGT 57.632 39.130 0.00 0.00 0.00 2.71
1905 3505 5.123227 AGATTATCGGGGTGTTACATTGTG 58.877 41.667 0.00 0.00 0.00 3.33
1906 3506 1.459450 ATCGGGGTGTTACATTGTGC 58.541 50.000 0.00 0.00 0.00 4.57
1907 3507 0.398696 TCGGGGTGTTACATTGTGCT 59.601 50.000 0.00 0.00 0.00 4.40
1908 3508 1.202830 TCGGGGTGTTACATTGTGCTT 60.203 47.619 0.00 0.00 0.00 3.91
1909 3509 1.068610 CGGGGTGTTACATTGTGCTTG 60.069 52.381 0.00 0.00 0.00 4.01
1910 3510 1.336795 GGGGTGTTACATTGTGCTTGC 60.337 52.381 0.00 0.00 0.00 4.01
1911 3511 1.336795 GGGTGTTACATTGTGCTTGCC 60.337 52.381 0.00 0.00 0.00 4.52
1912 3512 1.339610 GGTGTTACATTGTGCTTGCCA 59.660 47.619 0.00 0.00 0.00 4.92
1913 3513 2.223923 GGTGTTACATTGTGCTTGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
1914 3514 3.452474 GTGTTACATTGTGCTTGCCAAA 58.548 40.909 0.00 0.00 0.00 3.28
1915 3515 3.868077 GTGTTACATTGTGCTTGCCAAAA 59.132 39.130 0.00 0.00 0.00 2.44
1916 3516 4.025813 GTGTTACATTGTGCTTGCCAAAAG 60.026 41.667 0.00 0.00 0.00 2.27
1917 3517 4.142071 TGTTACATTGTGCTTGCCAAAAGA 60.142 37.500 0.00 0.00 0.00 2.52
1918 3518 3.756933 ACATTGTGCTTGCCAAAAGAT 57.243 38.095 0.00 0.00 0.00 2.40
1919 3519 4.870123 ACATTGTGCTTGCCAAAAGATA 57.130 36.364 0.00 0.00 0.00 1.98
1920 3520 5.212532 ACATTGTGCTTGCCAAAAGATAA 57.787 34.783 0.00 0.00 0.00 1.75
1921 3521 5.609423 ACATTGTGCTTGCCAAAAGATAAA 58.391 33.333 0.00 0.00 0.00 1.40
1922 3522 6.054295 ACATTGTGCTTGCCAAAAGATAAAA 58.946 32.000 0.00 0.00 0.00 1.52
1923 3523 6.711645 ACATTGTGCTTGCCAAAAGATAAAAT 59.288 30.769 0.00 0.00 0.00 1.82
1924 3524 6.542574 TTGTGCTTGCCAAAAGATAAAATG 57.457 33.333 0.00 0.00 0.00 2.32
1925 3525 5.609423 TGTGCTTGCCAAAAGATAAAATGT 58.391 33.333 0.00 0.00 0.00 2.71
1926 3526 6.753180 TGTGCTTGCCAAAAGATAAAATGTA 58.247 32.000 0.00 0.00 0.00 2.29
1927 3527 7.212976 TGTGCTTGCCAAAAGATAAAATGTAA 58.787 30.769 0.00 0.00 0.00 2.41
1928 3528 7.712639 TGTGCTTGCCAAAAGATAAAATGTAAA 59.287 29.630 0.00 0.00 0.00 2.01
1929 3529 8.555361 GTGCTTGCCAAAAGATAAAATGTAAAA 58.445 29.630 0.00 0.00 0.00 1.52
1930 3530 9.113838 TGCTTGCCAAAAGATAAAATGTAAAAA 57.886 25.926 0.00 0.00 0.00 1.94
1931 3531 9.597999 GCTTGCCAAAAGATAAAATGTAAAAAG 57.402 29.630 0.00 0.00 0.00 2.27
1933 3533 9.838339 TTGCCAAAAGATAAAATGTAAAAAGGA 57.162 25.926 0.00 0.00 0.00 3.36
1934 3534 9.838339 TGCCAAAAGATAAAATGTAAAAAGGAA 57.162 25.926 0.00 0.00 0.00 3.36
1939 3539 9.996554 AAAGATAAAATGTAAAAAGGAAGGGTG 57.003 29.630 0.00 0.00 0.00 4.61
1940 3540 8.950007 AGATAAAATGTAAAAAGGAAGGGTGA 57.050 30.769 0.00 0.00 0.00 4.02
1941 3541 9.374711 AGATAAAATGTAAAAAGGAAGGGTGAA 57.625 29.630 0.00 0.00 0.00 3.18
1942 3542 9.639601 GATAAAATGTAAAAAGGAAGGGTGAAG 57.360 33.333 0.00 0.00 0.00 3.02
1943 3543 5.468540 AATGTAAAAAGGAAGGGTGAAGC 57.531 39.130 0.00 0.00 0.00 3.86
1944 3544 4.178956 TGTAAAAAGGAAGGGTGAAGCT 57.821 40.909 0.00 0.00 0.00 3.74
1945 3545 4.142038 TGTAAAAAGGAAGGGTGAAGCTC 58.858 43.478 0.00 0.00 0.00 4.09
1946 3546 3.312736 AAAAAGGAAGGGTGAAGCTCA 57.687 42.857 0.00 0.00 0.00 4.26
1947 3547 2.278332 AAAGGAAGGGTGAAGCTCAC 57.722 50.000 7.52 7.52 46.23 3.51
1956 3556 2.758736 GTGAAGCTCACCATGACTCT 57.241 50.000 0.00 0.00 41.37 3.24
1957 3557 3.051081 GTGAAGCTCACCATGACTCTT 57.949 47.619 0.00 0.00 41.37 2.85
1958 3558 4.193826 GTGAAGCTCACCATGACTCTTA 57.806 45.455 0.00 0.00 41.37 2.10
1959 3559 4.764172 GTGAAGCTCACCATGACTCTTAT 58.236 43.478 0.00 0.00 41.37 1.73
1960 3560 4.569966 GTGAAGCTCACCATGACTCTTATG 59.430 45.833 0.00 0.00 41.37 1.90
1961 3561 3.191078 AGCTCACCATGACTCTTATGC 57.809 47.619 0.00 0.00 0.00 3.14
1962 3562 2.502947 AGCTCACCATGACTCTTATGCA 59.497 45.455 0.00 0.00 0.00 3.96
1963 3563 3.054875 AGCTCACCATGACTCTTATGCAA 60.055 43.478 0.00 0.00 0.00 4.08
1964 3564 3.311871 GCTCACCATGACTCTTATGCAAG 59.688 47.826 0.00 0.00 0.00 4.01
1965 3565 3.875727 CTCACCATGACTCTTATGCAAGG 59.124 47.826 0.00 0.00 32.22 3.61
1966 3566 3.264193 TCACCATGACTCTTATGCAAGGT 59.736 43.478 0.00 0.00 34.28 3.50
1967 3567 4.469586 TCACCATGACTCTTATGCAAGGTA 59.530 41.667 0.00 0.00 32.44 3.08
1968 3568 4.813161 CACCATGACTCTTATGCAAGGTAG 59.187 45.833 0.00 0.00 32.44 3.18
1969 3569 4.141620 ACCATGACTCTTATGCAAGGTAGG 60.142 45.833 0.00 0.00 32.44 3.18
1970 3570 4.101585 CCATGACTCTTATGCAAGGTAGGA 59.898 45.833 0.00 0.00 32.22 2.94
1971 3571 5.295950 CATGACTCTTATGCAAGGTAGGAG 58.704 45.833 0.00 0.00 33.09 3.69
1972 3572 4.610333 TGACTCTTATGCAAGGTAGGAGA 58.390 43.478 10.84 0.00 31.77 3.71
1973 3573 5.211973 TGACTCTTATGCAAGGTAGGAGAT 58.788 41.667 10.84 0.00 31.77 2.75
1974 3574 6.373759 TGACTCTTATGCAAGGTAGGAGATA 58.626 40.000 10.84 0.00 31.77 1.98
1975 3575 6.839134 TGACTCTTATGCAAGGTAGGAGATAA 59.161 38.462 10.84 0.00 31.77 1.75
1976 3576 7.344612 TGACTCTTATGCAAGGTAGGAGATAAA 59.655 37.037 10.84 0.00 31.77 1.40
1977 3577 8.090788 ACTCTTATGCAAGGTAGGAGATAAAA 57.909 34.615 10.84 0.00 31.77 1.52
1978 3578 8.207545 ACTCTTATGCAAGGTAGGAGATAAAAG 58.792 37.037 10.84 0.00 31.77 2.27
1979 3579 8.090788 TCTTATGCAAGGTAGGAGATAAAAGT 57.909 34.615 0.00 0.00 32.22 2.66
1980 3580 9.209048 TCTTATGCAAGGTAGGAGATAAAAGTA 57.791 33.333 0.00 0.00 32.22 2.24
1981 3581 9.832445 CTTATGCAAGGTAGGAGATAAAAGTAA 57.168 33.333 0.00 0.00 0.00 2.24
1984 3584 8.561738 TGCAAGGTAGGAGATAAAAGTAAAAG 57.438 34.615 0.00 0.00 0.00 2.27
1985 3585 8.380099 TGCAAGGTAGGAGATAAAAGTAAAAGA 58.620 33.333 0.00 0.00 0.00 2.52
1986 3586 9.397280 GCAAGGTAGGAGATAAAAGTAAAAGAT 57.603 33.333 0.00 0.00 0.00 2.40
1990 3590 9.491675 GGTAGGAGATAAAAGTAAAAGATAGGC 57.508 37.037 0.00 0.00 0.00 3.93
1991 3591 9.491675 GTAGGAGATAAAAGTAAAAGATAGGCC 57.508 37.037 0.00 0.00 0.00 5.19
1992 3592 7.519057 AGGAGATAAAAGTAAAAGATAGGCCC 58.481 38.462 0.00 0.00 0.00 5.80
1993 3593 7.351187 AGGAGATAAAAGTAAAAGATAGGCCCT 59.649 37.037 0.00 0.00 0.00 5.19
1994 3594 7.999545 GGAGATAAAAGTAAAAGATAGGCCCTT 59.000 37.037 0.00 0.00 0.00 3.95
1995 3595 8.982091 AGATAAAAGTAAAAGATAGGCCCTTC 57.018 34.615 0.00 0.00 0.00 3.46
1996 3596 7.715686 AGATAAAAGTAAAAGATAGGCCCTTCG 59.284 37.037 0.00 0.00 0.00 3.79
1997 3597 3.195471 AGTAAAAGATAGGCCCTTCGC 57.805 47.619 0.00 0.00 0.00 4.70
1998 3598 2.504175 AGTAAAAGATAGGCCCTTCGCA 59.496 45.455 0.00 0.00 40.31 5.10
1999 3599 2.044123 AAAAGATAGGCCCTTCGCAG 57.956 50.000 0.00 0.00 40.31 5.18
2000 3600 1.204146 AAAGATAGGCCCTTCGCAGA 58.796 50.000 0.00 0.00 40.31 4.26
2001 3601 0.755686 AAGATAGGCCCTTCGCAGAG 59.244 55.000 0.00 0.00 40.31 3.35
2002 3602 1.118356 AGATAGGCCCTTCGCAGAGG 61.118 60.000 0.00 0.00 40.31 3.69
2009 3609 4.198625 CTTCGCAGAGGGAAGCAG 57.801 61.111 10.26 0.00 43.47 4.24
2010 3610 1.593787 CTTCGCAGAGGGAAGCAGA 59.406 57.895 10.26 0.00 43.47 4.26
2011 3611 0.459934 CTTCGCAGAGGGAAGCAGAG 60.460 60.000 10.26 0.00 43.47 3.35
2012 3612 1.892819 TTCGCAGAGGGAAGCAGAGG 61.893 60.000 0.00 0.00 38.43 3.69
2013 3613 2.654079 CGCAGAGGGAAGCAGAGGT 61.654 63.158 0.00 0.00 0.00 3.85
2014 3614 1.682257 GCAGAGGGAAGCAGAGGTT 59.318 57.895 0.00 0.00 0.00 3.50
2015 3615 0.905357 GCAGAGGGAAGCAGAGGTTA 59.095 55.000 0.00 0.00 0.00 2.85
2016 3616 1.488393 GCAGAGGGAAGCAGAGGTTAT 59.512 52.381 0.00 0.00 0.00 1.89
2017 3617 2.484594 GCAGAGGGAAGCAGAGGTTATC 60.485 54.545 0.00 0.00 0.00 1.75
2018 3618 2.768527 CAGAGGGAAGCAGAGGTTATCA 59.231 50.000 0.00 0.00 0.00 2.15
2019 3619 3.390639 CAGAGGGAAGCAGAGGTTATCAT 59.609 47.826 0.00 0.00 0.00 2.45
2020 3620 3.390639 AGAGGGAAGCAGAGGTTATCATG 59.609 47.826 0.00 0.00 0.00 3.07
2021 3621 2.158696 AGGGAAGCAGAGGTTATCATGC 60.159 50.000 0.00 0.00 38.97 4.06
2022 3622 1.869767 GGAAGCAGAGGTTATCATGCG 59.130 52.381 0.00 0.00 43.41 4.73
2023 3623 2.483714 GGAAGCAGAGGTTATCATGCGA 60.484 50.000 0.00 0.00 43.41 5.10
2024 3624 3.397482 GAAGCAGAGGTTATCATGCGAT 58.603 45.455 0.00 0.00 43.41 4.58
2025 3625 3.482156 AGCAGAGGTTATCATGCGATT 57.518 42.857 0.00 0.00 43.41 3.34
2026 3626 3.813443 AGCAGAGGTTATCATGCGATTT 58.187 40.909 0.00 0.00 43.41 2.17
2027 3627 4.202441 AGCAGAGGTTATCATGCGATTTT 58.798 39.130 0.00 0.00 43.41 1.82
2028 3628 4.036027 AGCAGAGGTTATCATGCGATTTTG 59.964 41.667 0.00 0.00 43.41 2.44
2029 3629 4.201950 GCAGAGGTTATCATGCGATTTTGT 60.202 41.667 0.00 0.00 32.73 2.83
2030 3630 5.268544 CAGAGGTTATCATGCGATTTTGTG 58.731 41.667 0.00 0.00 32.73 3.33
2031 3631 4.336433 AGAGGTTATCATGCGATTTTGTGG 59.664 41.667 0.00 0.00 32.73 4.17
2032 3632 4.016444 AGGTTATCATGCGATTTTGTGGT 58.984 39.130 0.00 0.00 32.73 4.16
2033 3633 4.462483 AGGTTATCATGCGATTTTGTGGTT 59.538 37.500 0.00 0.00 32.73 3.67
2034 3634 4.562394 GGTTATCATGCGATTTTGTGGTTG 59.438 41.667 0.00 0.00 32.73 3.77
2035 3635 2.721274 TCATGCGATTTTGTGGTTGG 57.279 45.000 0.00 0.00 0.00 3.77
2036 3636 2.234143 TCATGCGATTTTGTGGTTGGA 58.766 42.857 0.00 0.00 0.00 3.53
2037 3637 2.824936 TCATGCGATTTTGTGGTTGGAT 59.175 40.909 0.00 0.00 0.00 3.41
2038 3638 2.721274 TGCGATTTTGTGGTTGGATG 57.279 45.000 0.00 0.00 0.00 3.51
2039 3639 1.336702 TGCGATTTTGTGGTTGGATGC 60.337 47.619 0.00 0.00 0.00 3.91
2040 3640 1.336702 GCGATTTTGTGGTTGGATGCA 60.337 47.619 0.00 0.00 0.00 3.96
2041 3641 2.327568 CGATTTTGTGGTTGGATGCAC 58.672 47.619 0.00 0.00 0.00 4.57
2042 3642 2.288091 CGATTTTGTGGTTGGATGCACA 60.288 45.455 0.00 0.00 0.00 4.57
2043 3643 3.726607 GATTTTGTGGTTGGATGCACAA 58.273 40.909 0.00 0.00 35.99 3.33
2044 3644 3.616956 TTTTGTGGTTGGATGCACAAA 57.383 38.095 0.00 0.00 43.16 2.83
2045 3645 3.616956 TTTGTGGTTGGATGCACAAAA 57.383 38.095 0.05 0.00 42.30 2.44
2046 3646 3.834489 TTGTGGTTGGATGCACAAAAT 57.166 38.095 0.00 0.00 35.02 1.82
2047 3647 3.383620 TGTGGTTGGATGCACAAAATC 57.616 42.857 0.00 0.00 31.17 2.17
2048 3648 2.964464 TGTGGTTGGATGCACAAAATCT 59.036 40.909 0.00 0.00 31.17 2.40
2049 3649 3.387374 TGTGGTTGGATGCACAAAATCTT 59.613 39.130 0.00 0.00 31.17 2.40
2050 3650 4.586421 TGTGGTTGGATGCACAAAATCTTA 59.414 37.500 0.00 0.00 31.17 2.10
2051 3651 5.069648 TGTGGTTGGATGCACAAAATCTTAA 59.930 36.000 0.00 0.00 31.17 1.85
2052 3652 6.165577 GTGGTTGGATGCACAAAATCTTAAT 58.834 36.000 0.00 0.00 31.17 1.40
2053 3653 6.091169 GTGGTTGGATGCACAAAATCTTAATG 59.909 38.462 0.00 0.00 31.17 1.90
2054 3654 5.063817 GGTTGGATGCACAAAATCTTAATGC 59.936 40.000 0.00 0.00 36.81 3.56
2055 3655 4.422840 TGGATGCACAAAATCTTAATGCG 58.577 39.130 0.00 0.00 39.18 4.73
2056 3656 4.157472 TGGATGCACAAAATCTTAATGCGA 59.843 37.500 0.00 0.00 39.18 5.10
2057 3657 5.101628 GGATGCACAAAATCTTAATGCGAA 58.898 37.500 0.00 0.00 39.18 4.70
2058 3658 5.576384 GGATGCACAAAATCTTAATGCGAAA 59.424 36.000 0.00 0.00 39.18 3.46
2059 3659 6.090628 GGATGCACAAAATCTTAATGCGAAAA 59.909 34.615 0.00 0.00 39.18 2.29
2060 3660 6.834959 TGCACAAAATCTTAATGCGAAAAA 57.165 29.167 0.00 0.00 39.18 1.94
2081 3681 6.569179 AAAACGTCACTTTATATTGCCACT 57.431 33.333 0.00 0.00 0.00 4.00
2082 3682 6.569179 AAACGTCACTTTATATTGCCACTT 57.431 33.333 0.00 0.00 0.00 3.16
2083 3683 5.545658 ACGTCACTTTATATTGCCACTTG 57.454 39.130 0.00 0.00 0.00 3.16
2084 3684 5.001232 ACGTCACTTTATATTGCCACTTGT 58.999 37.500 0.00 0.00 0.00 3.16
2085 3685 5.106712 ACGTCACTTTATATTGCCACTTGTG 60.107 40.000 0.00 0.00 0.00 3.33
2086 3686 5.121611 CGTCACTTTATATTGCCACTTGTGA 59.878 40.000 1.89 0.00 0.00 3.58
2087 3687 6.183360 CGTCACTTTATATTGCCACTTGTGAT 60.183 38.462 1.89 0.00 35.00 3.06
2088 3688 7.011016 CGTCACTTTATATTGCCACTTGTGATA 59.989 37.037 1.89 0.00 35.00 2.15
2089 3689 8.840321 GTCACTTTATATTGCCACTTGTGATAT 58.160 33.333 1.89 1.43 35.00 1.63
2090 3690 8.839343 TCACTTTATATTGCCACTTGTGATATG 58.161 33.333 1.89 0.00 0.00 1.78
2091 3691 8.077991 CACTTTATATTGCCACTTGTGATATGG 58.922 37.037 1.89 0.00 36.51 2.74
2092 3692 7.998383 ACTTTATATTGCCACTTGTGATATGGA 59.002 33.333 1.89 0.00 35.33 3.41
2093 3693 7.744087 TTATATTGCCACTTGTGATATGGAC 57.256 36.000 1.89 0.00 35.33 4.02
2094 3694 2.418368 TGCCACTTGTGATATGGACC 57.582 50.000 1.89 0.00 35.33 4.46
2095 3695 1.915489 TGCCACTTGTGATATGGACCT 59.085 47.619 1.89 0.00 35.33 3.85
2096 3696 2.308570 TGCCACTTGTGATATGGACCTT 59.691 45.455 1.89 0.00 35.33 3.50
2097 3697 3.245229 TGCCACTTGTGATATGGACCTTT 60.245 43.478 1.89 0.00 35.33 3.11
2098 3698 4.018870 TGCCACTTGTGATATGGACCTTTA 60.019 41.667 1.89 0.00 35.33 1.85
2099 3699 5.133221 GCCACTTGTGATATGGACCTTTAT 58.867 41.667 1.89 0.00 35.33 1.40
2100 3700 5.594317 GCCACTTGTGATATGGACCTTTATT 59.406 40.000 1.89 0.00 35.33 1.40
2101 3701 6.770785 GCCACTTGTGATATGGACCTTTATTA 59.229 38.462 1.89 0.00 35.33 0.98
2102 3702 7.448469 GCCACTTGTGATATGGACCTTTATTAT 59.552 37.037 1.89 0.00 35.33 1.28
2103 3703 8.786898 CCACTTGTGATATGGACCTTTATTATG 58.213 37.037 1.89 0.00 35.33 1.90
2104 3704 8.292448 CACTTGTGATATGGACCTTTATTATGC 58.708 37.037 0.00 0.00 0.00 3.14
2105 3705 7.998383 ACTTGTGATATGGACCTTTATTATGCA 59.002 33.333 0.00 0.00 0.00 3.96
2106 3706 7.984422 TGTGATATGGACCTTTATTATGCAG 57.016 36.000 0.00 0.00 0.00 4.41
2107 3707 7.517320 TGTGATATGGACCTTTATTATGCAGT 58.483 34.615 0.00 0.00 0.00 4.40
2108 3708 7.661437 TGTGATATGGACCTTTATTATGCAGTC 59.339 37.037 0.00 0.00 0.00 3.51
2109 3709 7.880195 GTGATATGGACCTTTATTATGCAGTCT 59.120 37.037 0.00 0.00 0.00 3.24
2110 3710 7.879677 TGATATGGACCTTTATTATGCAGTCTG 59.120 37.037 0.00 0.00 0.00 3.51
2111 3711 5.435686 TGGACCTTTATTATGCAGTCTGT 57.564 39.130 0.93 0.00 0.00 3.41
2112 3712 5.428253 TGGACCTTTATTATGCAGTCTGTC 58.572 41.667 0.93 0.00 0.00 3.51
2113 3713 4.508124 GGACCTTTATTATGCAGTCTGTCG 59.492 45.833 0.93 0.00 0.00 4.35
2114 3714 3.871594 ACCTTTATTATGCAGTCTGTCGC 59.128 43.478 0.93 0.00 0.00 5.19
2115 3715 4.122776 CCTTTATTATGCAGTCTGTCGCT 58.877 43.478 0.93 0.00 0.00 4.93
2116 3716 4.572389 CCTTTATTATGCAGTCTGTCGCTT 59.428 41.667 0.93 0.00 0.00 4.68
2117 3717 5.065218 CCTTTATTATGCAGTCTGTCGCTTT 59.935 40.000 0.93 0.00 0.00 3.51
2118 3718 6.403636 CCTTTATTATGCAGTCTGTCGCTTTT 60.404 38.462 0.93 0.00 0.00 2.27
2119 3719 7.201609 CCTTTATTATGCAGTCTGTCGCTTTTA 60.202 37.037 0.93 0.00 0.00 1.52
2120 3720 7.786178 TTATTATGCAGTCTGTCGCTTTTAT 57.214 32.000 0.93 0.00 0.00 1.40
2121 3721 6.683974 ATTATGCAGTCTGTCGCTTTTATT 57.316 33.333 0.93 0.00 0.00 1.40
2122 3722 6.494893 TTATGCAGTCTGTCGCTTTTATTT 57.505 33.333 0.93 0.00 0.00 1.40
2123 3723 4.404507 TGCAGTCTGTCGCTTTTATTTC 57.595 40.909 0.93 0.00 0.00 2.17
2124 3724 4.065088 TGCAGTCTGTCGCTTTTATTTCT 58.935 39.130 0.93 0.00 0.00 2.52
2125 3725 4.515191 TGCAGTCTGTCGCTTTTATTTCTT 59.485 37.500 0.93 0.00 0.00 2.52
2126 3726 5.082723 GCAGTCTGTCGCTTTTATTTCTTC 58.917 41.667 0.93 0.00 0.00 2.87
2127 3727 5.106908 GCAGTCTGTCGCTTTTATTTCTTCT 60.107 40.000 0.93 0.00 0.00 2.85
2128 3728 6.529696 CAGTCTGTCGCTTTTATTTCTTCTC 58.470 40.000 0.00 0.00 0.00 2.87
2129 3729 6.367422 CAGTCTGTCGCTTTTATTTCTTCTCT 59.633 38.462 0.00 0.00 0.00 3.10
2130 3730 7.542477 CAGTCTGTCGCTTTTATTTCTTCTCTA 59.458 37.037 0.00 0.00 0.00 2.43
2131 3731 8.254508 AGTCTGTCGCTTTTATTTCTTCTCTAT 58.745 33.333 0.00 0.00 0.00 1.98
2132 3732 8.536407 GTCTGTCGCTTTTATTTCTTCTCTATC 58.464 37.037 0.00 0.00 0.00 2.08
2133 3733 8.251026 TCTGTCGCTTTTATTTCTTCTCTATCA 58.749 33.333 0.00 0.00 0.00 2.15
2134 3734 8.186178 TGTCGCTTTTATTTCTTCTCTATCAC 57.814 34.615 0.00 0.00 0.00 3.06
2135 3735 7.817478 TGTCGCTTTTATTTCTTCTCTATCACA 59.183 33.333 0.00 0.00 0.00 3.58
2136 3736 8.111224 GTCGCTTTTATTTCTTCTCTATCACAC 58.889 37.037 0.00 0.00 0.00 3.82
2137 3737 7.009265 TCGCTTTTATTTCTTCTCTATCACACG 59.991 37.037 0.00 0.00 0.00 4.49
2138 3738 7.009265 CGCTTTTATTTCTTCTCTATCACACGA 59.991 37.037 0.00 0.00 0.00 4.35
2139 3739 8.821894 GCTTTTATTTCTTCTCTATCACACGAT 58.178 33.333 0.00 0.00 35.50 3.73
2141 3741 9.869757 TTTTATTTCTTCTCTATCACACGATCA 57.130 29.630 0.00 0.00 32.73 2.92
2149 3749 8.972262 TTCTCTATCACACGATCATATAAAGC 57.028 34.615 0.00 0.00 32.73 3.51
2150 3750 8.341892 TCTCTATCACACGATCATATAAAGCT 57.658 34.615 0.00 0.00 32.73 3.74
2151 3751 8.797438 TCTCTATCACACGATCATATAAAGCTT 58.203 33.333 0.00 0.00 32.73 3.74
2161 3761 9.220767 ACGATCATATAAAGCTTATTTTCTCCC 57.779 33.333 0.00 0.00 0.00 4.30
2162 3762 9.219603 CGATCATATAAAGCTTATTTTCTCCCA 57.780 33.333 0.00 0.00 0.00 4.37
2164 3764 9.866655 ATCATATAAAGCTTATTTTCTCCCACA 57.133 29.630 0.00 0.00 0.00 4.17
2165 3765 9.120538 TCATATAAAGCTTATTTTCTCCCACAC 57.879 33.333 0.00 0.00 0.00 3.82
2166 3766 9.125026 CATATAAAGCTTATTTTCTCCCACACT 57.875 33.333 0.00 0.00 0.00 3.55
2169 3769 9.700831 ATAAAGCTTATTTTCTCCCACACTAAT 57.299 29.630 0.00 0.00 0.00 1.73
2171 3771 9.528489 AAAGCTTATTTTCTCCCACACTAATAA 57.472 29.630 0.00 0.00 0.00 1.40
2172 3772 8.738645 AGCTTATTTTCTCCCACACTAATAAG 57.261 34.615 0.00 0.00 38.04 1.73
2173 3773 8.329502 AGCTTATTTTCTCCCACACTAATAAGT 58.670 33.333 0.00 0.00 37.64 2.24
2174 3774 8.613482 GCTTATTTTCTCCCACACTAATAAGTC 58.387 37.037 0.00 0.00 37.64 3.01
2175 3775 9.667107 CTTATTTTCTCCCACACTAATAAGTCA 57.333 33.333 0.00 0.00 33.82 3.41
2178 3778 9.614792 ATTTTCTCCCACACTAATAAGTCATAC 57.385 33.333 0.00 0.00 31.97 2.39
2179 3779 7.727578 TTCTCCCACACTAATAAGTCATACA 57.272 36.000 0.00 0.00 31.97 2.29
2180 3780 7.914427 TCTCCCACACTAATAAGTCATACAT 57.086 36.000 0.00 0.00 31.97 2.29
2181 3781 9.429109 TTCTCCCACACTAATAAGTCATACATA 57.571 33.333 0.00 0.00 31.97 2.29
2182 3782 9.601810 TCTCCCACACTAATAAGTCATACATAT 57.398 33.333 0.00 0.00 31.97 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
165 168 1.302511 CCCACTGGTCCCACTTTCG 60.303 63.158 0.00 0.00 0.00 3.46
223 226 2.815503 GCGGTACCCACTTACATTGTTT 59.184 45.455 6.25 0.00 0.00 2.83
240 243 2.066262 CTAAAGACAATGACACGCGGT 58.934 47.619 12.47 5.31 0.00 5.68
289 293 5.193099 AGCCTAAGAAATAACATGTGGGT 57.807 39.130 0.00 0.00 0.00 4.51
354 358 2.043980 CACGCCGGCCCTTGTTTAT 61.044 57.895 23.46 0.00 0.00 1.40
395 413 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
396 414 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
397 415 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
398 416 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
399 417 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
400 418 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
401 419 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
402 420 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
403 421 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
404 422 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
405 423 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
406 424 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
407 425 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
408 426 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
409 427 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
410 428 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
411 429 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
412 430 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
413 431 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
414 432 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
415 433 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
416 434 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
417 435 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
418 436 0.094558 GTCGTGTGTGTGTGTGTGTG 59.905 55.000 0.00 0.00 0.00 3.82
419 437 0.319986 TGTCGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
420 438 0.094558 GTGTCGTGTGTGTGTGTGTG 59.905 55.000 0.00 0.00 0.00 3.82
421 439 0.319986 TGTGTCGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
422 440 0.094558 GTGTGTCGTGTGTGTGTGTG 59.905 55.000 0.00 0.00 0.00 3.82
423 441 1.348538 CGTGTGTCGTGTGTGTGTGT 61.349 55.000 0.00 0.00 34.52 3.72
424 442 1.343484 CGTGTGTCGTGTGTGTGTG 59.657 57.895 0.00 0.00 34.52 3.82
425 443 2.449525 GCGTGTGTCGTGTGTGTGT 61.450 57.895 0.00 0.00 42.13 3.72
426 444 2.319707 GCGTGTGTCGTGTGTGTG 59.680 61.111 0.00 0.00 42.13 3.82
427 445 3.251763 CGCGTGTGTCGTGTGTGT 61.252 61.111 0.00 0.00 43.87 3.72
437 455 4.851114 GTATGCAGCGCGCGTGTG 62.851 66.667 32.35 27.74 46.97 3.82
439 457 4.271170 GAGTATGCAGCGCGCGTG 62.271 66.667 32.35 26.47 46.97 5.34
445 463 2.280389 ATGGCCGAGTATGCAGCG 60.280 61.111 0.00 0.00 0.00 5.18
446 464 2.256591 CCATGGCCGAGTATGCAGC 61.257 63.158 0.00 0.00 0.00 5.25
447 465 2.256591 GCCATGGCCGAGTATGCAG 61.257 63.158 27.24 0.00 34.56 4.41
448 466 2.203195 GCCATGGCCGAGTATGCA 60.203 61.111 27.24 0.00 34.56 3.96
460 478 4.041917 GTGTGCACGGTGGCCATG 62.042 66.667 9.72 7.70 0.00 3.66
461 479 4.577677 TGTGTGCACGGTGGCCAT 62.578 61.111 9.72 0.00 0.00 4.40
470 488 0.239613 TGTGTGTTGTGTGTGTGCAC 59.760 50.000 10.75 10.75 45.44 4.57
471 489 0.239613 GTGTGTGTTGTGTGTGTGCA 59.760 50.000 0.00 0.00 0.00 4.57
472 490 0.239613 TGTGTGTGTTGTGTGTGTGC 59.760 50.000 0.00 0.00 0.00 4.57
473 491 1.265365 TGTGTGTGTGTTGTGTGTGTG 59.735 47.619 0.00 0.00 0.00 3.82
482 500 0.793861 GTCGTGTGTGTGTGTGTGTT 59.206 50.000 0.00 0.00 0.00 3.32
541 691 3.292936 GCTGCTGCTTGTGGCTGT 61.293 61.111 8.53 0.00 42.39 4.40
645 808 3.352554 TCGTTGTTGTACTGCGTTCTA 57.647 42.857 0.00 0.00 0.00 2.10
929 2525 1.686110 CCCGTAGTGAGCCCTCCTT 60.686 63.158 0.00 0.00 0.00 3.36
998 2594 4.916293 GCCGCCATCTCGCCATCA 62.916 66.667 0.00 0.00 0.00 3.07
1243 2839 0.535328 CCCTAGATCGAGCTCGTCCA 60.535 60.000 33.33 17.05 40.80 4.02
1275 2871 1.075536 ACACCCCAGCCCTTTAAGAAG 59.924 52.381 0.00 0.00 0.00 2.85
1323 2920 2.271821 CATCCATGGCCACCACGA 59.728 61.111 8.16 0.57 35.80 4.35
1427 3024 7.624549 AGAAAAGAGCACTATTCACTTATGGA 58.375 34.615 0.00 0.00 0.00 3.41
1439 3036 6.215636 AGAAAAGGGGATAGAAAAGAGCACTA 59.784 38.462 0.00 0.00 0.00 2.74
1799 3399 6.538021 CCACATGTCCAAAAATCAAAGTCAAA 59.462 34.615 0.00 0.00 0.00 2.69
1903 3503 7.650834 TTACATTTTATCTTTTGGCAAGCAC 57.349 32.000 0.00 0.00 0.00 4.40
1904 3504 8.668510 TTTTACATTTTATCTTTTGGCAAGCA 57.331 26.923 0.00 0.00 0.00 3.91
1905 3505 9.597999 CTTTTTACATTTTATCTTTTGGCAAGC 57.402 29.630 0.00 0.00 0.00 4.01
1907 3507 9.838339 TCCTTTTTACATTTTATCTTTTGGCAA 57.162 25.926 0.00 0.00 0.00 4.52
1908 3508 9.838339 TTCCTTTTTACATTTTATCTTTTGGCA 57.162 25.926 0.00 0.00 0.00 4.92
1913 3513 9.996554 CACCCTTCCTTTTTACATTTTATCTTT 57.003 29.630 0.00 0.00 0.00 2.52
1914 3514 9.374711 TCACCCTTCCTTTTTACATTTTATCTT 57.625 29.630 0.00 0.00 0.00 2.40
1915 3515 8.950007 TCACCCTTCCTTTTTACATTTTATCT 57.050 30.769 0.00 0.00 0.00 1.98
1916 3516 9.639601 CTTCACCCTTCCTTTTTACATTTTATC 57.360 33.333 0.00 0.00 0.00 1.75
1917 3517 8.094548 GCTTCACCCTTCCTTTTTACATTTTAT 58.905 33.333 0.00 0.00 0.00 1.40
1918 3518 7.289084 AGCTTCACCCTTCCTTTTTACATTTTA 59.711 33.333 0.00 0.00 0.00 1.52
1919 3519 6.099701 AGCTTCACCCTTCCTTTTTACATTTT 59.900 34.615 0.00 0.00 0.00 1.82
1920 3520 5.602561 AGCTTCACCCTTCCTTTTTACATTT 59.397 36.000 0.00 0.00 0.00 2.32
1921 3521 5.147767 AGCTTCACCCTTCCTTTTTACATT 58.852 37.500 0.00 0.00 0.00 2.71
1922 3522 4.740902 AGCTTCACCCTTCCTTTTTACAT 58.259 39.130 0.00 0.00 0.00 2.29
1923 3523 4.142038 GAGCTTCACCCTTCCTTTTTACA 58.858 43.478 0.00 0.00 0.00 2.41
1924 3524 4.023107 GTGAGCTTCACCCTTCCTTTTTAC 60.023 45.833 5.33 0.00 41.37 2.01
1925 3525 4.142038 GTGAGCTTCACCCTTCCTTTTTA 58.858 43.478 5.33 0.00 41.37 1.52
1926 3526 2.959030 GTGAGCTTCACCCTTCCTTTTT 59.041 45.455 5.33 0.00 41.37 1.94
1927 3527 2.587522 GTGAGCTTCACCCTTCCTTTT 58.412 47.619 5.33 0.00 41.37 2.27
1928 3528 2.278332 GTGAGCTTCACCCTTCCTTT 57.722 50.000 5.33 0.00 41.37 3.11
1937 3537 2.758736 AGAGTCATGGTGAGCTTCAC 57.241 50.000 7.52 7.52 46.23 3.18
1938 3538 4.763073 CATAAGAGTCATGGTGAGCTTCA 58.237 43.478 0.00 0.00 0.00 3.02
1939 3539 3.559242 GCATAAGAGTCATGGTGAGCTTC 59.441 47.826 0.00 0.00 0.00 3.86
1940 3540 3.054875 TGCATAAGAGTCATGGTGAGCTT 60.055 43.478 0.00 0.00 0.00 3.74
1941 3541 2.502947 TGCATAAGAGTCATGGTGAGCT 59.497 45.455 0.00 0.00 0.00 4.09
1942 3542 2.910199 TGCATAAGAGTCATGGTGAGC 58.090 47.619 0.00 0.00 0.00 4.26
1943 3543 3.875727 CCTTGCATAAGAGTCATGGTGAG 59.124 47.826 0.00 0.00 35.92 3.51
1944 3544 3.264193 ACCTTGCATAAGAGTCATGGTGA 59.736 43.478 0.00 0.00 37.03 4.02
1945 3545 3.614092 ACCTTGCATAAGAGTCATGGTG 58.386 45.455 0.00 0.00 37.03 4.17
1946 3546 4.141620 CCTACCTTGCATAAGAGTCATGGT 60.142 45.833 0.00 0.00 40.15 3.55
1947 3547 4.101585 TCCTACCTTGCATAAGAGTCATGG 59.898 45.833 0.00 0.00 35.92 3.66
1948 3548 5.069648 TCTCCTACCTTGCATAAGAGTCATG 59.930 44.000 0.00 0.00 35.92 3.07
1949 3549 5.211973 TCTCCTACCTTGCATAAGAGTCAT 58.788 41.667 0.00 0.00 35.92 3.06
1950 3550 4.610333 TCTCCTACCTTGCATAAGAGTCA 58.390 43.478 0.00 0.00 35.92 3.41
1951 3551 5.799827 ATCTCCTACCTTGCATAAGAGTC 57.200 43.478 0.00 0.00 35.92 3.36
1952 3552 7.676683 TTTATCTCCTACCTTGCATAAGAGT 57.323 36.000 0.00 0.00 35.92 3.24
1953 3553 8.207545 ACTTTTATCTCCTACCTTGCATAAGAG 58.792 37.037 0.00 0.00 35.92 2.85
1954 3554 8.090788 ACTTTTATCTCCTACCTTGCATAAGA 57.909 34.615 0.00 0.00 35.92 2.10
1955 3555 9.832445 TTACTTTTATCTCCTACCTTGCATAAG 57.168 33.333 0.00 0.00 0.00 1.73
1958 3558 9.178758 CTTTTACTTTTATCTCCTACCTTGCAT 57.821 33.333 0.00 0.00 0.00 3.96
1959 3559 8.380099 TCTTTTACTTTTATCTCCTACCTTGCA 58.620 33.333 0.00 0.00 0.00 4.08
1960 3560 8.788325 TCTTTTACTTTTATCTCCTACCTTGC 57.212 34.615 0.00 0.00 0.00 4.01
1964 3564 9.491675 GCCTATCTTTTACTTTTATCTCCTACC 57.508 37.037 0.00 0.00 0.00 3.18
1965 3565 9.491675 GGCCTATCTTTTACTTTTATCTCCTAC 57.508 37.037 0.00 0.00 0.00 3.18
1966 3566 8.657712 GGGCCTATCTTTTACTTTTATCTCCTA 58.342 37.037 0.84 0.00 0.00 2.94
1967 3567 7.351187 AGGGCCTATCTTTTACTTTTATCTCCT 59.649 37.037 2.82 0.00 0.00 3.69
1968 3568 7.519057 AGGGCCTATCTTTTACTTTTATCTCC 58.481 38.462 2.82 0.00 0.00 3.71
1969 3569 8.982091 AAGGGCCTATCTTTTACTTTTATCTC 57.018 34.615 6.41 0.00 0.00 2.75
1970 3570 7.715686 CGAAGGGCCTATCTTTTACTTTTATCT 59.284 37.037 6.41 0.00 0.00 1.98
1971 3571 7.520131 GCGAAGGGCCTATCTTTTACTTTTATC 60.520 40.741 6.41 0.00 34.80 1.75
1972 3572 6.262496 GCGAAGGGCCTATCTTTTACTTTTAT 59.738 38.462 6.41 0.00 34.80 1.40
1973 3573 5.587443 GCGAAGGGCCTATCTTTTACTTTTA 59.413 40.000 6.41 0.00 34.80 1.52
1974 3574 4.398358 GCGAAGGGCCTATCTTTTACTTTT 59.602 41.667 6.41 0.00 34.80 2.27
1975 3575 3.945921 GCGAAGGGCCTATCTTTTACTTT 59.054 43.478 6.41 0.00 34.80 2.66
1976 3576 3.054655 TGCGAAGGGCCTATCTTTTACTT 60.055 43.478 6.41 0.00 42.61 2.24
1977 3577 2.504175 TGCGAAGGGCCTATCTTTTACT 59.496 45.455 6.41 0.00 42.61 2.24
1978 3578 2.872858 CTGCGAAGGGCCTATCTTTTAC 59.127 50.000 6.41 0.00 42.61 2.01
1979 3579 2.769663 TCTGCGAAGGGCCTATCTTTTA 59.230 45.455 6.41 0.00 42.61 1.52
1980 3580 1.559682 TCTGCGAAGGGCCTATCTTTT 59.440 47.619 6.41 0.00 42.61 2.27
1981 3581 1.139853 CTCTGCGAAGGGCCTATCTTT 59.860 52.381 6.41 0.00 42.61 2.52
1982 3582 0.755686 CTCTGCGAAGGGCCTATCTT 59.244 55.000 6.41 0.00 42.61 2.40
1983 3583 1.118356 CCTCTGCGAAGGGCCTATCT 61.118 60.000 6.41 0.00 42.61 1.98
1984 3584 1.369321 CCTCTGCGAAGGGCCTATC 59.631 63.158 6.41 6.05 42.61 2.08
1985 3585 3.555967 CCTCTGCGAAGGGCCTAT 58.444 61.111 6.41 0.00 42.61 2.57
1991 3591 1.449246 CTGCTTCCCTCTGCGAAGG 60.449 63.158 0.00 0.00 37.74 3.46
1992 3592 0.459934 CTCTGCTTCCCTCTGCGAAG 60.460 60.000 0.00 0.00 39.82 3.79
1993 3593 1.593787 CTCTGCTTCCCTCTGCGAA 59.406 57.895 0.00 0.00 0.00 4.70
1994 3594 2.354401 CCTCTGCTTCCCTCTGCGA 61.354 63.158 0.00 0.00 0.00 5.10
1995 3595 2.177594 AACCTCTGCTTCCCTCTGCG 62.178 60.000 0.00 0.00 0.00 5.18
1996 3596 0.905357 TAACCTCTGCTTCCCTCTGC 59.095 55.000 0.00 0.00 0.00 4.26
1997 3597 2.768527 TGATAACCTCTGCTTCCCTCTG 59.231 50.000 0.00 0.00 0.00 3.35
1998 3598 3.121929 TGATAACCTCTGCTTCCCTCT 57.878 47.619 0.00 0.00 0.00 3.69
1999 3599 3.737850 CATGATAACCTCTGCTTCCCTC 58.262 50.000 0.00 0.00 0.00 4.30
2000 3600 2.158696 GCATGATAACCTCTGCTTCCCT 60.159 50.000 0.00 0.00 0.00 4.20
2001 3601 2.225467 GCATGATAACCTCTGCTTCCC 58.775 52.381 0.00 0.00 0.00 3.97
2002 3602 1.869767 CGCATGATAACCTCTGCTTCC 59.130 52.381 0.00 0.00 32.48 3.46
2003 3603 2.826428 TCGCATGATAACCTCTGCTTC 58.174 47.619 0.00 0.00 32.48 3.86
2004 3604 2.988010 TCGCATGATAACCTCTGCTT 57.012 45.000 0.00 0.00 32.48 3.91
2005 3605 3.482156 AATCGCATGATAACCTCTGCT 57.518 42.857 0.00 0.00 33.40 4.24
2006 3606 4.201950 ACAAAATCGCATGATAACCTCTGC 60.202 41.667 0.00 0.00 33.40 4.26
2007 3607 5.268544 CACAAAATCGCATGATAACCTCTG 58.731 41.667 0.00 0.00 33.40 3.35
2008 3608 4.336433 CCACAAAATCGCATGATAACCTCT 59.664 41.667 0.00 0.00 33.40 3.69
2009 3609 4.096382 ACCACAAAATCGCATGATAACCTC 59.904 41.667 0.00 0.00 33.40 3.85
2010 3610 4.016444 ACCACAAAATCGCATGATAACCT 58.984 39.130 0.00 0.00 33.40 3.50
2011 3611 4.370364 ACCACAAAATCGCATGATAACC 57.630 40.909 0.00 0.00 33.40 2.85
2012 3612 4.562394 CCAACCACAAAATCGCATGATAAC 59.438 41.667 0.00 0.00 33.40 1.89
2013 3613 4.460731 TCCAACCACAAAATCGCATGATAA 59.539 37.500 0.00 0.00 33.40 1.75
2014 3614 4.013050 TCCAACCACAAAATCGCATGATA 58.987 39.130 0.00 0.00 33.40 2.15
2015 3615 2.824936 TCCAACCACAAAATCGCATGAT 59.175 40.909 0.00 0.00 35.98 2.45
2016 3616 2.234143 TCCAACCACAAAATCGCATGA 58.766 42.857 0.00 0.00 0.00 3.07
2017 3617 2.721274 TCCAACCACAAAATCGCATG 57.279 45.000 0.00 0.00 0.00 4.06
2018 3618 2.674747 GCATCCAACCACAAAATCGCAT 60.675 45.455 0.00 0.00 0.00 4.73
2019 3619 1.336702 GCATCCAACCACAAAATCGCA 60.337 47.619 0.00 0.00 0.00 5.10
2020 3620 1.336702 TGCATCCAACCACAAAATCGC 60.337 47.619 0.00 0.00 0.00 4.58
2021 3621 2.288091 TGTGCATCCAACCACAAAATCG 60.288 45.455 0.00 0.00 38.87 3.34
2022 3622 3.383620 TGTGCATCCAACCACAAAATC 57.616 42.857 0.00 0.00 38.87 2.17
2023 3623 3.834489 TTGTGCATCCAACCACAAAAT 57.166 38.095 3.95 0.00 45.74 1.82
2026 3626 3.387374 AGATTTTGTGCATCCAACCACAA 59.613 39.130 2.41 2.41 46.68 3.33
2027 3627 2.964464 AGATTTTGTGCATCCAACCACA 59.036 40.909 0.00 0.00 39.95 4.17
2028 3628 3.665745 AGATTTTGTGCATCCAACCAC 57.334 42.857 0.00 0.00 0.00 4.16
2029 3629 5.798125 TTAAGATTTTGTGCATCCAACCA 57.202 34.783 0.00 0.00 0.00 3.67
2030 3630 5.063817 GCATTAAGATTTTGTGCATCCAACC 59.936 40.000 0.00 0.00 35.93 3.77
2031 3631 5.220265 CGCATTAAGATTTTGTGCATCCAAC 60.220 40.000 0.00 0.00 35.63 3.77
2032 3632 4.863689 CGCATTAAGATTTTGTGCATCCAA 59.136 37.500 0.00 0.00 35.63 3.53
2033 3633 4.157472 TCGCATTAAGATTTTGTGCATCCA 59.843 37.500 0.00 0.00 35.63 3.41
2034 3634 4.671377 TCGCATTAAGATTTTGTGCATCC 58.329 39.130 0.00 0.00 35.63 3.51
2035 3635 6.630676 TTTCGCATTAAGATTTTGTGCATC 57.369 33.333 0.00 0.00 35.63 3.91
2036 3636 7.418840 TTTTTCGCATTAAGATTTTGTGCAT 57.581 28.000 0.00 0.00 35.63 3.96
2037 3637 6.834959 TTTTTCGCATTAAGATTTTGTGCA 57.165 29.167 8.28 0.00 35.63 4.57
2057 3657 6.977213 AGTGGCAATATAAAGTGACGTTTTT 58.023 32.000 0.00 0.00 28.66 1.94
2058 3658 6.569179 AGTGGCAATATAAAGTGACGTTTT 57.431 33.333 0.00 0.00 28.66 2.43
2059 3659 6.016610 ACAAGTGGCAATATAAAGTGACGTTT 60.017 34.615 0.00 0.00 28.66 3.60
2060 3660 5.472137 ACAAGTGGCAATATAAAGTGACGTT 59.528 36.000 0.00 0.00 28.66 3.99
2061 3661 5.001232 ACAAGTGGCAATATAAAGTGACGT 58.999 37.500 0.00 0.00 28.66 4.34
2062 3662 5.121611 TCACAAGTGGCAATATAAAGTGACG 59.878 40.000 0.00 0.00 28.66 4.35
2063 3663 6.494893 TCACAAGTGGCAATATAAAGTGAC 57.505 37.500 0.00 0.00 0.00 3.67
2064 3664 8.839343 CATATCACAAGTGGCAATATAAAGTGA 58.161 33.333 0.00 8.64 37.80 3.41
2065 3665 8.077991 CCATATCACAAGTGGCAATATAAAGTG 58.922 37.037 0.00 0.00 0.00 3.16
2066 3666 7.998383 TCCATATCACAAGTGGCAATATAAAGT 59.002 33.333 0.00 0.00 33.01 2.66
2067 3667 8.292448 GTCCATATCACAAGTGGCAATATAAAG 58.708 37.037 0.00 0.00 33.01 1.85
2068 3668 7.230510 GGTCCATATCACAAGTGGCAATATAAA 59.769 37.037 0.00 0.00 33.01 1.40
2069 3669 6.714810 GGTCCATATCACAAGTGGCAATATAA 59.285 38.462 0.00 0.00 33.01 0.98
2070 3670 6.044287 AGGTCCATATCACAAGTGGCAATATA 59.956 38.462 0.00 0.00 33.01 0.86
2071 3671 5.072741 GGTCCATATCACAAGTGGCAATAT 58.927 41.667 0.00 0.00 33.01 1.28
2072 3672 4.165950 AGGTCCATATCACAAGTGGCAATA 59.834 41.667 0.00 0.00 33.01 1.90
2073 3673 3.053395 AGGTCCATATCACAAGTGGCAAT 60.053 43.478 0.00 0.00 33.01 3.56
2074 3674 2.308570 AGGTCCATATCACAAGTGGCAA 59.691 45.455 0.00 0.00 33.01 4.52
2075 3675 1.915489 AGGTCCATATCACAAGTGGCA 59.085 47.619 0.00 0.00 33.01 4.92
2076 3676 2.717639 AGGTCCATATCACAAGTGGC 57.282 50.000 0.00 0.00 33.01 5.01
2077 3677 8.786898 CATAATAAAGGTCCATATCACAAGTGG 58.213 37.037 0.00 0.00 0.00 4.00
2078 3678 8.292448 GCATAATAAAGGTCCATATCACAAGTG 58.708 37.037 0.00 0.00 0.00 3.16
2079 3679 7.998383 TGCATAATAAAGGTCCATATCACAAGT 59.002 33.333 0.00 0.00 0.00 3.16
2080 3680 8.394971 TGCATAATAAAGGTCCATATCACAAG 57.605 34.615 0.00 0.00 0.00 3.16
2081 3681 7.998383 ACTGCATAATAAAGGTCCATATCACAA 59.002 33.333 0.00 0.00 0.00 3.33
2082 3682 7.517320 ACTGCATAATAAAGGTCCATATCACA 58.483 34.615 0.00 0.00 0.00 3.58
2083 3683 7.880195 AGACTGCATAATAAAGGTCCATATCAC 59.120 37.037 0.00 0.00 0.00 3.06
2084 3684 7.879677 CAGACTGCATAATAAAGGTCCATATCA 59.120 37.037 0.00 0.00 0.00 2.15
2085 3685 7.880195 ACAGACTGCATAATAAAGGTCCATATC 59.120 37.037 1.25 0.00 0.00 1.63
2086 3686 7.749666 ACAGACTGCATAATAAAGGTCCATAT 58.250 34.615 1.25 0.00 0.00 1.78
2087 3687 7.136822 ACAGACTGCATAATAAAGGTCCATA 57.863 36.000 1.25 0.00 0.00 2.74
2088 3688 6.006275 ACAGACTGCATAATAAAGGTCCAT 57.994 37.500 1.25 0.00 0.00 3.41
2089 3689 5.428253 GACAGACTGCATAATAAAGGTCCA 58.572 41.667 1.25 0.00 0.00 4.02
2090 3690 4.508124 CGACAGACTGCATAATAAAGGTCC 59.492 45.833 1.25 0.00 0.00 4.46
2091 3691 4.025647 GCGACAGACTGCATAATAAAGGTC 60.026 45.833 1.25 0.00 0.00 3.85
2092 3692 3.871594 GCGACAGACTGCATAATAAAGGT 59.128 43.478 1.25 0.00 0.00 3.50
2093 3693 4.122776 AGCGACAGACTGCATAATAAAGG 58.877 43.478 1.25 0.00 0.00 3.11
2094 3694 5.725110 AAGCGACAGACTGCATAATAAAG 57.275 39.130 1.25 0.00 0.00 1.85
2095 3695 6.494893 AAAAGCGACAGACTGCATAATAAA 57.505 33.333 1.25 0.00 0.00 1.40
2096 3696 7.786178 ATAAAAGCGACAGACTGCATAATAA 57.214 32.000 1.25 0.00 0.00 1.40
2097 3697 7.786178 AATAAAAGCGACAGACTGCATAATA 57.214 32.000 1.25 0.00 0.00 0.98
2098 3698 6.683974 AATAAAAGCGACAGACTGCATAAT 57.316 33.333 1.25 0.00 0.00 1.28
2099 3699 6.371548 AGAAATAAAAGCGACAGACTGCATAA 59.628 34.615 1.25 0.00 0.00 1.90
2100 3700 5.874810 AGAAATAAAAGCGACAGACTGCATA 59.125 36.000 1.25 0.00 0.00 3.14
2101 3701 4.697352 AGAAATAAAAGCGACAGACTGCAT 59.303 37.500 1.25 0.00 0.00 3.96
2102 3702 4.065088 AGAAATAAAAGCGACAGACTGCA 58.935 39.130 1.25 0.00 0.00 4.41
2103 3703 4.670227 AGAAATAAAAGCGACAGACTGC 57.330 40.909 1.25 0.00 0.00 4.40
2104 3704 6.367422 AGAGAAGAAATAAAAGCGACAGACTG 59.633 38.462 0.00 0.00 0.00 3.51
2105 3705 6.459923 AGAGAAGAAATAAAAGCGACAGACT 58.540 36.000 0.00 0.00 0.00 3.24
2106 3706 6.713792 AGAGAAGAAATAAAAGCGACAGAC 57.286 37.500 0.00 0.00 0.00 3.51
2107 3707 8.251026 TGATAGAGAAGAAATAAAAGCGACAGA 58.749 33.333 0.00 0.00 0.00 3.41
2108 3708 8.324567 GTGATAGAGAAGAAATAAAAGCGACAG 58.675 37.037 0.00 0.00 0.00 3.51
2109 3709 7.817478 TGTGATAGAGAAGAAATAAAAGCGACA 59.183 33.333 0.00 0.00 0.00 4.35
2110 3710 8.111224 GTGTGATAGAGAAGAAATAAAAGCGAC 58.889 37.037 0.00 0.00 0.00 5.19
2111 3711 7.009265 CGTGTGATAGAGAAGAAATAAAAGCGA 59.991 37.037 0.00 0.00 0.00 4.93
2112 3712 7.009265 TCGTGTGATAGAGAAGAAATAAAAGCG 59.991 37.037 0.00 0.00 0.00 4.68
2113 3713 8.186178 TCGTGTGATAGAGAAGAAATAAAAGC 57.814 34.615 0.00 0.00 0.00 3.51
2115 3715 9.869757 TGATCGTGTGATAGAGAAGAAATAAAA 57.130 29.630 0.00 0.00 34.09 1.52
2123 3723 9.071221 GCTTTATATGATCGTGTGATAGAGAAG 57.929 37.037 0.00 0.00 34.09 2.85
2124 3724 8.797438 AGCTTTATATGATCGTGTGATAGAGAA 58.203 33.333 0.00 0.00 34.09 2.87
2125 3725 8.341892 AGCTTTATATGATCGTGTGATAGAGA 57.658 34.615 0.00 0.00 34.09 3.10
2126 3726 8.978564 AAGCTTTATATGATCGTGTGATAGAG 57.021 34.615 0.00 0.00 34.09 2.43
2135 3735 9.220767 GGGAGAAAATAAGCTTTATATGATCGT 57.779 33.333 3.20 0.00 0.00 3.73
2136 3736 9.219603 TGGGAGAAAATAAGCTTTATATGATCG 57.780 33.333 3.20 0.00 0.00 3.69
2138 3738 9.866655 TGTGGGAGAAAATAAGCTTTATATGAT 57.133 29.630 3.20 0.00 0.00 2.45
2139 3739 9.120538 GTGTGGGAGAAAATAAGCTTTATATGA 57.879 33.333 3.20 0.00 0.00 2.15
2140 3740 9.125026 AGTGTGGGAGAAAATAAGCTTTATATG 57.875 33.333 3.20 0.00 0.00 1.78
2143 3743 9.700831 ATTAGTGTGGGAGAAAATAAGCTTTAT 57.299 29.630 3.20 0.00 0.00 1.40
2145 3745 9.528489 TTATTAGTGTGGGAGAAAATAAGCTTT 57.472 29.630 3.20 0.00 0.00 3.51
2146 3746 9.178758 CTTATTAGTGTGGGAGAAAATAAGCTT 57.821 33.333 3.48 3.48 32.98 3.74
2147 3747 8.329502 ACTTATTAGTGTGGGAGAAAATAAGCT 58.670 33.333 10.85 0.00 39.11 3.74
2148 3748 8.507524 ACTTATTAGTGTGGGAGAAAATAAGC 57.492 34.615 10.85 0.00 39.11 3.09
2149 3749 9.667107 TGACTTATTAGTGTGGGAGAAAATAAG 57.333 33.333 9.81 9.81 40.35 1.73
2152 3752 9.614792 GTATGACTTATTAGTGTGGGAGAAAAT 57.385 33.333 0.00 0.00 33.84 1.82
2153 3753 8.598916 TGTATGACTTATTAGTGTGGGAGAAAA 58.401 33.333 0.00 0.00 33.84 2.29
2154 3754 8.141298 TGTATGACTTATTAGTGTGGGAGAAA 57.859 34.615 0.00 0.00 33.84 2.52
2155 3755 7.727578 TGTATGACTTATTAGTGTGGGAGAA 57.272 36.000 0.00 0.00 33.84 2.87
2156 3756 7.914427 ATGTATGACTTATTAGTGTGGGAGA 57.086 36.000 0.00 0.00 33.84 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.