Multiple sequence alignment - TraesCS7A01G150600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G150600 chr7A 100.000 5209 0 0 1 5209 103218742 103213534 0.000000e+00 9620.0
1 TraesCS7A01G150600 chr7A 82.395 1244 215 4 1364 2605 7766074 7767315 0.000000e+00 1081.0
2 TraesCS7A01G150600 chr7A 81.860 1086 155 26 3058 4124 7767660 7768722 0.000000e+00 876.0
3 TraesCS7A01G150600 chr7A 92.469 239 17 1 4265 4502 647307971 647308209 1.800000e-89 340.0
4 TraesCS7A01G150600 chr7A 92.050 239 18 1 4265 4502 24861039 24861277 8.360000e-88 335.0
5 TraesCS7A01G150600 chr7A 83.951 324 50 2 2665 2987 7767303 7767625 5.070000e-80 309.0
6 TraesCS7A01G150600 chr7D 95.427 3674 125 11 624 4264 101098357 101094694 0.000000e+00 5814.0
7 TraesCS7A01G150600 chr7D 81.403 1468 198 40 2665 4124 6781363 6782763 0.000000e+00 1129.0
8 TraesCS7A01G150600 chr7D 80.734 1308 242 10 1303 2605 6780073 6781375 0.000000e+00 1011.0
9 TraesCS7A01G150600 chr7D 91.150 339 21 6 1 338 101099354 101099024 7.950000e-123 451.0
10 TraesCS7A01G150600 chr7D 92.806 139 5 2 463 597 101098853 101098716 4.120000e-46 196.0
11 TraesCS7A01G150600 chr7B 95.121 3628 146 13 661 4264 57636569 57632949 0.000000e+00 5690.0
12 TraesCS7A01G150600 chr7B 91.582 392 28 4 1 391 57638730 57638343 2.130000e-148 536.0
13 TraesCS7A01G150600 chr7B 93.662 142 9 0 523 664 57636988 57636847 4.090000e-51 213.0
14 TraesCS7A01G150600 chr4A 81.199 1484 195 44 2665 4124 733421772 733420349 0.000000e+00 1118.0
15 TraesCS7A01G150600 chr4A 81.255 1243 231 2 1364 2605 733452775 733454016 0.000000e+00 1003.0
16 TraesCS7A01G150600 chr4A 80.445 1304 253 2 1303 2605 733423062 733421760 0.000000e+00 994.0
17 TraesCS7A01G150600 chr4A 83.158 95 16 0 1364 1458 733452703 733452797 2.580000e-13 87.9
18 TraesCS7A01G150600 chrUn 81.290 1240 230 2 1367 2605 334535599 334534361 0.000000e+00 1003.0
19 TraesCS7A01G150600 chrUn 80.524 1145 221 2 1462 2605 339771814 339770671 0.000000e+00 878.0
20 TraesCS7A01G150600 chrUn 80.524 1145 221 2 1462 2605 339774475 339775618 0.000000e+00 878.0
21 TraesCS7A01G150600 chrUn 83.118 930 121 23 3070 3986 339770316 339769410 0.000000e+00 815.0
22 TraesCS7A01G150600 chrUn 83.118 930 121 23 3070 3986 339775973 339776879 0.000000e+00 815.0
23 TraesCS7A01G150600 chrUn 82.818 809 103 23 3191 3986 464059170 464058385 0.000000e+00 691.0
24 TraesCS7A01G150600 chrUn 82.069 725 94 23 3275 3986 467116536 467115835 2.090000e-163 586.0
25 TraesCS7A01G150600 chrUn 83.158 95 16 0 1367 1461 334535671 334535577 2.580000e-13 87.9
26 TraesCS7A01G150600 chr3A 94.816 598 28 3 4613 5209 703932768 703933363 0.000000e+00 929.0
27 TraesCS7A01G150600 chr5D 91.847 601 43 5 4612 5209 432148877 432148280 0.000000e+00 833.0
28 TraesCS7A01G150600 chr5D 91.137 598 44 9 4617 5209 424154765 424154172 0.000000e+00 802.0
29 TraesCS7A01G150600 chr5D 90.391 614 49 9 4601 5209 318871188 318871796 0.000000e+00 798.0
30 TraesCS7A01G150600 chr3D 91.405 605 40 9 4610 5209 394153545 394152948 0.000000e+00 819.0
31 TraesCS7A01G150600 chr3D 79.070 172 31 5 10 177 12356469 12356639 4.260000e-21 113.0
32 TraesCS7A01G150600 chr3D 89.231 65 6 1 2893 2957 549451114 549451177 4.320000e-11 80.5
33 TraesCS7A01G150600 chr2D 91.290 597 40 11 4615 5206 643876661 643876072 0.000000e+00 804.0
34 TraesCS7A01G150600 chr2D 80.000 165 27 6 32 191 548087416 548087253 3.300000e-22 117.0
35 TraesCS7A01G150600 chr2D 93.878 49 0 2 3819 3864 392526363 392526411 2.600000e-08 71.3
36 TraesCS7A01G150600 chr4D 91.015 601 45 7 4613 5209 450004289 450004884 0.000000e+00 802.0
37 TraesCS7A01G150600 chr1D 90.728 604 48 8 4609 5209 15760285 15759687 0.000000e+00 798.0
38 TraesCS7A01G150600 chr5A 90.651 599 53 3 4611 5209 456631622 456631027 0.000000e+00 793.0
39 TraesCS7A01G150600 chr5A 91.304 253 18 3 4265 4513 596053960 596053708 4.990000e-90 342.0
40 TraesCS7A01G150600 chr5A 92.050 239 18 1 4265 4502 383894782 383894544 8.360000e-88 335.0
41 TraesCS7A01G150600 chr5A 91.393 244 20 1 4265 4507 637058357 637058114 3.010000e-87 333.0
42 TraesCS7A01G150600 chr5A 77.903 267 39 14 44 304 660317839 660317587 1.170000e-31 148.0
43 TraesCS7A01G150600 chr6A 92.887 239 16 1 4265 4502 564392843 564393081 3.860000e-91 346.0
44 TraesCS7A01G150600 chr6A 94.231 52 2 1 3823 3873 450107535 450107484 1.560000e-10 78.7
45 TraesCS7A01G150600 chr2A 92.469 239 17 1 4265 4502 162455660 162455898 1.800000e-89 340.0
46 TraesCS7A01G150600 chr2A 91.770 243 19 1 4265 4506 28695012 28695254 2.320000e-88 337.0
47 TraesCS7A01G150600 chr2A 88.889 63 6 1 3823 3884 570608627 570608689 5.590000e-10 76.8
48 TraesCS7A01G150600 chr2A 93.878 49 0 2 3819 3864 530381029 530381077 2.600000e-08 71.3
49 TraesCS7A01G150600 chr1A 91.393 244 20 1 4265 4507 41902302 41902545 3.010000e-87 333.0
50 TraesCS7A01G150600 chr2B 78.049 205 36 7 18 215 655020266 655020064 2.550000e-23 121.0
51 TraesCS7A01G150600 chr2B 93.878 49 0 2 3819 3864 464466985 464467033 2.600000e-08 71.3
52 TraesCS7A01G150600 chr6D 92.308 52 3 1 3823 3873 313187463 313187412 7.240000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G150600 chr7A 103213534 103218742 5208 True 9620.000000 9620 100.000000 1 5209 1 chr7A.!!$R1 5208
1 TraesCS7A01G150600 chr7A 7766074 7768722 2648 False 755.333333 1081 82.735333 1364 4124 3 chr7A.!!$F3 2760
2 TraesCS7A01G150600 chr7D 101094694 101099354 4660 True 2153.666667 5814 93.127667 1 4264 3 chr7D.!!$R1 4263
3 TraesCS7A01G150600 chr7D 6780073 6782763 2690 False 1070.000000 1129 81.068500 1303 4124 2 chr7D.!!$F1 2821
4 TraesCS7A01G150600 chr7B 57632949 57638730 5781 True 2146.333333 5690 93.455000 1 4264 3 chr7B.!!$R1 4263
5 TraesCS7A01G150600 chr4A 733420349 733423062 2713 True 1056.000000 1118 80.822000 1303 4124 2 chr4A.!!$R1 2821
6 TraesCS7A01G150600 chr4A 733452703 733454016 1313 False 545.450000 1003 82.206500 1364 2605 2 chr4A.!!$F1 1241
7 TraesCS7A01G150600 chrUn 339769410 339771814 2404 True 846.500000 878 81.821000 1462 3986 2 chrUn.!!$R4 2524
8 TraesCS7A01G150600 chrUn 339774475 339776879 2404 False 846.500000 878 81.821000 1462 3986 2 chrUn.!!$F1 2524
9 TraesCS7A01G150600 chrUn 464058385 464059170 785 True 691.000000 691 82.818000 3191 3986 1 chrUn.!!$R1 795
10 TraesCS7A01G150600 chrUn 467115835 467116536 701 True 586.000000 586 82.069000 3275 3986 1 chrUn.!!$R2 711
11 TraesCS7A01G150600 chrUn 334534361 334535671 1310 True 545.450000 1003 82.224000 1367 2605 2 chrUn.!!$R3 1238
12 TraesCS7A01G150600 chr3A 703932768 703933363 595 False 929.000000 929 94.816000 4613 5209 1 chr3A.!!$F1 596
13 TraesCS7A01G150600 chr5D 432148280 432148877 597 True 833.000000 833 91.847000 4612 5209 1 chr5D.!!$R2 597
14 TraesCS7A01G150600 chr5D 424154172 424154765 593 True 802.000000 802 91.137000 4617 5209 1 chr5D.!!$R1 592
15 TraesCS7A01G150600 chr5D 318871188 318871796 608 False 798.000000 798 90.391000 4601 5209 1 chr5D.!!$F1 608
16 TraesCS7A01G150600 chr3D 394152948 394153545 597 True 819.000000 819 91.405000 4610 5209 1 chr3D.!!$R1 599
17 TraesCS7A01G150600 chr2D 643876072 643876661 589 True 804.000000 804 91.290000 4615 5206 1 chr2D.!!$R2 591
18 TraesCS7A01G150600 chr4D 450004289 450004884 595 False 802.000000 802 91.015000 4613 5209 1 chr4D.!!$F1 596
19 TraesCS7A01G150600 chr1D 15759687 15760285 598 True 798.000000 798 90.728000 4609 5209 1 chr1D.!!$R1 600
20 TraesCS7A01G150600 chr5A 456631027 456631622 595 True 793.000000 793 90.651000 4611 5209 1 chr5A.!!$R2 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 2817 0.036164 ACGTTGCTATCACCAAGCCA 59.964 50.0 0.00 0.0 39.30 4.75 F
1410 3331 0.319641 GCCTCAAGTTCCTCGACGTT 60.320 55.0 0.00 0.0 0.00 3.99 F
1631 3552 1.152383 GAATACCTCAACCTCGGCGC 61.152 60.0 0.00 0.0 0.00 6.53 F
2547 4468 0.656259 TGTCGTCTAATCGGCTCTCG 59.344 55.0 0.00 0.0 36.35 4.04 F
3362 5283 0.107800 CTGGTGCTCCCACTGATGAG 60.108 60.0 1.59 0.0 41.75 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1743 3664 1.001641 CAGGTTGGGGAGAAGGCAG 60.002 63.158 0.00 0.00 0.00 4.85 R
2364 4285 1.005340 GATCGAGCTTCAGCAGGTTG 58.995 55.000 0.75 0.00 45.16 3.77 R
3354 5275 2.037136 GCTGCCGTTGCTCATCAGT 61.037 57.895 0.00 0.00 38.71 3.41 R
3738 5683 0.389426 TGTTAGAGAAGAACGCCGGC 60.389 55.000 19.07 19.07 0.00 6.13 R
4718 6685 0.622136 TAGAGGGAGGAGTGCACGTA 59.378 55.000 12.01 0.00 0.00 3.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.061131 CGCATCACAACATCGAGAACC 59.939 52.381 0.00 0.00 0.00 3.62
42 43 1.660607 CATCACAACATCGAGAACCGG 59.339 52.381 0.00 0.00 39.14 5.28
70 71 5.685861 GCTCATCACCAACTCCAAGATGATA 60.686 44.000 0.00 0.00 42.72 2.15
156 158 5.104527 TGGATATTACTTCAGTTGGACCCTG 60.105 44.000 0.00 0.00 0.00 4.45
237 239 6.712179 TTGCATGCATTGGAATTACTATCA 57.288 33.333 23.37 0.00 29.72 2.15
251 253 9.087424 GGAATTACTATCAAGTTTTGAATTGGC 57.913 33.333 0.00 0.00 43.95 4.52
260 262 4.768583 AGTTTTGAATTGGCACATTGTGT 58.231 34.783 17.64 0.00 39.30 3.72
304 306 5.829924 AGTATGTATGCAAAAGGATGGAAGG 59.170 40.000 0.00 0.00 0.00 3.46
307 309 4.889409 TGTATGCAAAAGGATGGAAGGATC 59.111 41.667 0.00 0.00 0.00 3.36
309 311 1.678101 GCAAAAGGATGGAAGGATCGG 59.322 52.381 0.00 0.00 0.00 4.18
325 327 3.735746 GGATCGGCAAAGAAGTTTGTTTG 59.264 43.478 9.40 9.40 44.37 2.93
345 375 3.362706 TGCCGAGTTATGAGTTACTCCT 58.637 45.455 10.10 2.48 37.98 3.69
347 377 4.142227 TGCCGAGTTATGAGTTACTCCTTC 60.142 45.833 10.10 0.23 37.98 3.46
349 379 5.733937 GCCGAGTTATGAGTTACTCCTTCTC 60.734 48.000 10.10 10.72 37.98 2.87
354 384 9.398538 GAGTTATGAGTTACTCCTTCTCTAAGA 57.601 37.037 10.10 0.00 35.78 2.10
371 401 9.877178 TTCTCTAAGAATGATCTAAAAGTGTCC 57.123 33.333 0.00 0.00 33.77 4.02
393 423 7.093024 TGTCCTATAAAAGTTTACAGAGGGAGG 60.093 40.741 9.69 0.00 0.00 4.30
394 424 6.386050 TCCTATAAAAGTTTACAGAGGGAGGG 59.614 42.308 9.69 0.00 0.00 4.30
395 425 3.808834 AAAAGTTTACAGAGGGAGGGG 57.191 47.619 0.00 0.00 0.00 4.79
396 426 1.670059 AAGTTTACAGAGGGAGGGGG 58.330 55.000 0.00 0.00 0.00 5.40
397 427 0.797579 AGTTTACAGAGGGAGGGGGA 59.202 55.000 0.00 0.00 0.00 4.81
398 428 1.369983 AGTTTACAGAGGGAGGGGGAT 59.630 52.381 0.00 0.00 0.00 3.85
399 429 2.206223 GTTTACAGAGGGAGGGGGATT 58.794 52.381 0.00 0.00 0.00 3.01
400 430 2.581246 GTTTACAGAGGGAGGGGGATTT 59.419 50.000 0.00 0.00 0.00 2.17
401 431 1.893315 TACAGAGGGAGGGGGATTTG 58.107 55.000 0.00 0.00 0.00 2.32
402 432 1.228510 CAGAGGGAGGGGGATTTGC 59.771 63.158 0.00 0.00 0.00 3.68
403 433 1.085605 AGAGGGAGGGGGATTTGCT 59.914 57.895 0.00 0.00 0.00 3.91
404 434 1.228510 GAGGGAGGGGGATTTGCTG 59.771 63.158 0.00 0.00 0.00 4.41
405 435 1.230281 AGGGAGGGGGATTTGCTGA 60.230 57.895 0.00 0.00 0.00 4.26
406 436 0.850883 AGGGAGGGGGATTTGCTGAA 60.851 55.000 0.00 0.00 0.00 3.02
407 437 0.041090 GGGAGGGGGATTTGCTGAAA 59.959 55.000 0.00 0.00 0.00 2.69
408 438 1.552254 GGGAGGGGGATTTGCTGAAAA 60.552 52.381 0.00 0.00 0.00 2.29
409 439 2.256306 GGAGGGGGATTTGCTGAAAAA 58.744 47.619 0.00 0.00 0.00 1.94
410 440 2.840038 GGAGGGGGATTTGCTGAAAAAT 59.160 45.455 0.00 0.00 32.43 1.82
411 441 4.030216 GGAGGGGGATTTGCTGAAAAATA 58.970 43.478 0.00 0.00 29.89 1.40
426 456 8.655901 TGCTGAAAAATAAAGTTTTAGGGGAAT 58.344 29.630 0.00 0.00 30.87 3.01
429 459 8.379331 TGAAAAATAAAGTTTTAGGGGAATGGG 58.621 33.333 0.00 0.00 30.87 4.00
430 460 6.884472 AAATAAAGTTTTAGGGGAATGGGG 57.116 37.500 0.00 0.00 0.00 4.96
431 461 5.824542 ATAAAGTTTTAGGGGAATGGGGA 57.175 39.130 0.00 0.00 0.00 4.81
432 462 3.757947 AAGTTTTAGGGGAATGGGGAG 57.242 47.619 0.00 0.00 0.00 4.30
433 463 1.930204 AGTTTTAGGGGAATGGGGAGG 59.070 52.381 0.00 0.00 0.00 4.30
435 465 0.629270 TTTAGGGGAATGGGGAGGGG 60.629 60.000 0.00 0.00 0.00 4.79
436 466 2.593681 TTAGGGGAATGGGGAGGGGG 62.594 65.000 0.00 0.00 0.00 5.40
440 470 0.927220 GGGAATGGGGAGGGGGTTTA 60.927 60.000 0.00 0.00 0.00 2.01
441 471 0.556258 GGAATGGGGAGGGGGTTTAG 59.444 60.000 0.00 0.00 0.00 1.85
442 472 1.603634 GAATGGGGAGGGGGTTTAGA 58.396 55.000 0.00 0.00 0.00 2.10
443 473 1.495148 GAATGGGGAGGGGGTTTAGAG 59.505 57.143 0.00 0.00 0.00 2.43
444 474 0.728843 ATGGGGAGGGGGTTTAGAGA 59.271 55.000 0.00 0.00 0.00 3.10
448 478 1.769465 GGGAGGGGGTTTAGAGATGTC 59.231 57.143 0.00 0.00 0.00 3.06
449 479 1.769465 GGAGGGGGTTTAGAGATGTCC 59.231 57.143 0.00 0.00 0.00 4.02
450 480 1.769465 GAGGGGGTTTAGAGATGTCCC 59.231 57.143 0.00 0.00 37.59 4.46
451 481 1.369983 AGGGGGTTTAGAGATGTCCCT 59.630 52.381 0.00 0.00 38.38 4.20
452 482 2.595380 AGGGGGTTTAGAGATGTCCCTA 59.405 50.000 0.00 0.00 41.11 3.53
453 483 3.212397 AGGGGGTTTAGAGATGTCCCTAT 59.788 47.826 0.00 0.00 41.11 2.57
454 484 4.426023 AGGGGGTTTAGAGATGTCCCTATA 59.574 45.833 0.00 0.00 41.11 1.31
455 485 5.102346 AGGGGGTTTAGAGATGTCCCTATAA 60.102 44.000 0.00 0.00 41.11 0.98
456 486 5.791141 GGGGGTTTAGAGATGTCCCTATAAT 59.209 44.000 0.00 0.00 38.31 1.28
457 487 6.296489 GGGGGTTTAGAGATGTCCCTATAATG 60.296 46.154 0.00 0.00 38.31 1.90
458 488 6.296489 GGGGTTTAGAGATGTCCCTATAATGG 60.296 46.154 0.00 0.00 38.31 3.16
461 491 8.606830 GGTTTAGAGATGTCCCTATAATGGATT 58.393 37.037 0.00 0.00 33.65 3.01
503 1514 0.168788 AAAGGATGTGCGCATGAACG 59.831 50.000 19.33 0.00 35.07 3.95
553 1828 7.119262 TCGAAGAACAAAAAGACCATATTCTCC 59.881 37.037 0.00 0.00 0.00 3.71
557 1832 7.944554 AGAACAAAAAGACCATATTCTCCAGAA 59.055 33.333 0.00 0.00 38.56 3.02
604 1879 1.674322 GCTCGGGTAAAAGCCAGCA 60.674 57.895 11.90 0.00 38.69 4.41
607 1882 1.200020 CTCGGGTAAAAGCCAGCAAAG 59.800 52.381 0.00 0.00 34.89 2.77
611 1886 3.739830 CGGGTAAAAGCCAGCAAAGTTTT 60.740 43.478 0.00 0.00 34.89 2.43
613 1888 4.035091 GGGTAAAAGCCAGCAAAGTTTTTG 59.965 41.667 5.78 0.00 35.40 2.44
911 2817 0.036164 ACGTTGCTATCACCAAGCCA 59.964 50.000 0.00 0.00 39.30 4.75
919 2825 3.005155 GCTATCACCAAGCCATTCCATTC 59.995 47.826 0.00 0.00 33.73 2.67
1054 2975 1.001406 CCACGTTCCTCAGCTTCTTCT 59.999 52.381 0.00 0.00 0.00 2.85
1071 2992 1.267121 TCTTCTTCCTCTTCCACGGG 58.733 55.000 0.00 0.00 0.00 5.28
1099 3020 2.743928 CTCCAGTGGCCAGCGTTC 60.744 66.667 5.11 0.00 0.00 3.95
1410 3331 0.319641 GCCTCAAGTTCCTCGACGTT 60.320 55.000 0.00 0.00 0.00 3.99
1631 3552 1.152383 GAATACCTCAACCTCGGCGC 61.152 60.000 0.00 0.00 0.00 6.53
1740 3661 3.641454 GAGATCCCCATCCGGCCC 61.641 72.222 0.00 0.00 0.00 5.80
1969 3890 4.373771 GGAACAACACCGACCTCC 57.626 61.111 0.00 0.00 0.00 4.30
2221 4142 2.464459 GGCTTATCGCGCTTGCAGT 61.464 57.895 5.56 0.00 40.44 4.40
2415 4336 4.271816 CTCCGAGGCGTGATCCCG 62.272 72.222 0.00 0.00 0.00 5.14
2535 4456 1.367840 GGTGCTCAACCTGTCGTCT 59.632 57.895 0.00 0.00 46.55 4.18
2538 4459 2.353803 GGTGCTCAACCTGTCGTCTAAT 60.354 50.000 0.00 0.00 46.55 1.73
2547 4468 0.656259 TGTCGTCTAATCGGCTCTCG 59.344 55.000 0.00 0.00 36.35 4.04
2641 4562 3.706373 GCTTGCCGGAGACCCTCA 61.706 66.667 5.05 0.00 31.08 3.86
2861 4782 4.796231 GGCGTCGATGGCGTCTGT 62.796 66.667 16.02 0.00 38.98 3.41
3362 5283 0.107800 CTGGTGCTCCCACTGATGAG 60.108 60.000 1.59 0.00 41.75 2.90
3678 5599 4.659172 TTGCAAGGCTCCGTGGGG 62.659 66.667 0.00 0.00 0.00 4.96
3698 5619 3.275999 GGTACATCGCACCAGGTAAATT 58.724 45.455 0.00 0.00 36.01 1.82
3699 5620 3.311596 GGTACATCGCACCAGGTAAATTC 59.688 47.826 0.00 0.00 36.01 2.17
3731 5676 8.336806 CAAATTAACAGAAACAAATGCATGTGT 58.663 29.630 17.14 17.14 32.81 3.72
3732 5677 6.825284 TTAACAGAAACAAATGCATGTGTG 57.175 33.333 23.17 12.83 32.81 3.82
3733 5678 4.652421 ACAGAAACAAATGCATGTGTGA 57.348 36.364 23.17 0.00 32.81 3.58
3734 5679 5.204409 ACAGAAACAAATGCATGTGTGAT 57.796 34.783 23.17 14.96 32.81 3.06
3735 5680 4.986034 ACAGAAACAAATGCATGTGTGATG 59.014 37.500 23.17 21.24 32.81 3.07
3736 5681 4.986034 CAGAAACAAATGCATGTGTGATGT 59.014 37.500 23.17 11.06 32.81 3.06
3737 5682 4.986034 AGAAACAAATGCATGTGTGATGTG 59.014 37.500 23.17 0.00 32.81 3.21
3738 5683 3.306917 ACAAATGCATGTGTGATGTGG 57.693 42.857 21.90 0.00 30.82 4.17
3739 5684 1.996898 CAAATGCATGTGTGATGTGGC 59.003 47.619 8.86 0.00 0.00 5.01
3740 5685 0.533491 AATGCATGTGTGATGTGGCC 59.467 50.000 0.00 0.00 0.00 5.36
3741 5686 1.659622 ATGCATGTGTGATGTGGCCG 61.660 55.000 0.00 0.00 0.00 6.13
3742 5687 3.055080 GCATGTGTGATGTGGCCGG 62.055 63.158 0.00 0.00 0.00 6.13
3958 5909 0.674581 CACCACCAGCATGACATCGT 60.675 55.000 0.00 0.00 39.69 3.73
4142 6105 1.183676 AGGACCTCGCTAAACACGGT 61.184 55.000 0.00 0.00 0.00 4.83
4199 6165 1.005037 GTCATGCACCACGGACTCA 60.005 57.895 0.00 0.00 0.00 3.41
4213 6179 2.159379 CGGACTCATCGTTCTGACATGA 60.159 50.000 0.00 0.00 0.00 3.07
4240 6206 4.202121 TGTGGAAGATATAGTTCAGCGTCC 60.202 45.833 0.00 0.00 0.00 4.79
4264 6230 6.712547 CCCCTACACATTTTGATCCTCTATTC 59.287 42.308 0.00 0.00 0.00 1.75
4265 6231 7.282585 CCCTACACATTTTGATCCTCTATTCA 58.717 38.462 0.00 0.00 0.00 2.57
4266 6232 7.775093 CCCTACACATTTTGATCCTCTATTCAA 59.225 37.037 0.00 0.00 0.00 2.69
4267 6233 8.616076 CCTACACATTTTGATCCTCTATTCAAC 58.384 37.037 0.00 0.00 31.87 3.18
4268 6234 9.388506 CTACACATTTTGATCCTCTATTCAACT 57.611 33.333 0.00 0.00 31.87 3.16
4269 6235 8.641498 ACACATTTTGATCCTCTATTCAACTT 57.359 30.769 0.00 0.00 31.87 2.66
4270 6236 9.739276 ACACATTTTGATCCTCTATTCAACTTA 57.261 29.630 0.00 0.00 31.87 2.24
4278 6244 8.577296 TGATCCTCTATTCAACTTATAAGTCCG 58.423 37.037 18.28 12.57 38.57 4.79
4279 6245 8.707796 ATCCTCTATTCAACTTATAAGTCCGA 57.292 34.615 18.28 14.52 38.57 4.55
4280 6246 8.529424 TCCTCTATTCAACTTATAAGTCCGAA 57.471 34.615 22.74 22.74 38.57 4.30
4281 6247 8.630917 TCCTCTATTCAACTTATAAGTCCGAAG 58.369 37.037 23.83 16.49 38.57 3.79
4282 6248 8.414778 CCTCTATTCAACTTATAAGTCCGAAGT 58.585 37.037 23.83 17.58 38.57 3.01
4283 6249 9.453325 CTCTATTCAACTTATAAGTCCGAAGTC 57.547 37.037 23.83 0.00 38.57 3.01
4284 6250 9.186837 TCTATTCAACTTATAAGTCCGAAGTCT 57.813 33.333 23.83 15.58 38.57 3.24
4285 6251 9.804758 CTATTCAACTTATAAGTCCGAAGTCTT 57.195 33.333 23.83 15.35 38.57 3.01
4288 6254 9.985730 TTCAACTTATAAGTCCGAAGTCTTTAA 57.014 29.630 18.28 0.00 38.57 1.52
4289 6255 9.985730 TCAACTTATAAGTCCGAAGTCTTTAAA 57.014 29.630 18.28 0.00 38.57 1.52
4296 6262 7.479897 AAGTCCGAAGTCTTTAAAAAGTCTC 57.520 36.000 2.58 0.00 34.18 3.36
4297 6263 6.818233 AGTCCGAAGTCTTTAAAAAGTCTCT 58.182 36.000 2.58 0.00 34.18 3.10
4298 6264 7.949434 AGTCCGAAGTCTTTAAAAAGTCTCTA 58.051 34.615 2.58 0.00 34.18 2.43
4299 6265 8.586744 AGTCCGAAGTCTTTAAAAAGTCTCTAT 58.413 33.333 2.58 0.00 34.18 1.98
4300 6266 8.862074 GTCCGAAGTCTTTAAAAAGTCTCTATC 58.138 37.037 2.58 0.00 34.18 2.08
4301 6267 8.804204 TCCGAAGTCTTTAAAAAGTCTCTATCT 58.196 33.333 2.58 0.00 34.18 1.98
4302 6268 8.865001 CCGAAGTCTTTAAAAAGTCTCTATCTG 58.135 37.037 2.58 0.00 34.18 2.90
4303 6269 9.413048 CGAAGTCTTTAAAAAGTCTCTATCTGT 57.587 33.333 2.58 0.00 34.18 3.41
4308 6274 9.847224 TCTTTAAAAAGTCTCTATCTGTTTGGT 57.153 29.630 2.58 0.00 37.31 3.67
4311 6277 7.511959 AAAAAGTCTCTATCTGTTTGGTTCC 57.488 36.000 0.00 0.00 0.00 3.62
4312 6278 4.828072 AGTCTCTATCTGTTTGGTTCCC 57.172 45.455 0.00 0.00 0.00 3.97
4313 6279 3.195825 AGTCTCTATCTGTTTGGTTCCCG 59.804 47.826 0.00 0.00 0.00 5.14
4314 6280 3.194968 GTCTCTATCTGTTTGGTTCCCGA 59.805 47.826 0.00 0.00 0.00 5.14
4315 6281 3.447586 TCTCTATCTGTTTGGTTCCCGAG 59.552 47.826 0.00 0.00 0.00 4.63
4316 6282 3.437213 TCTATCTGTTTGGTTCCCGAGA 58.563 45.455 0.00 0.00 0.00 4.04
4317 6283 2.474410 ATCTGTTTGGTTCCCGAGAC 57.526 50.000 0.00 0.00 0.00 3.36
4318 6284 1.420430 TCTGTTTGGTTCCCGAGACT 58.580 50.000 0.00 0.00 0.00 3.24
4319 6285 1.766496 TCTGTTTGGTTCCCGAGACTT 59.234 47.619 0.00 0.00 0.00 3.01
4320 6286 2.967201 TCTGTTTGGTTCCCGAGACTTA 59.033 45.455 0.00 0.00 0.00 2.24
4321 6287 3.581332 TCTGTTTGGTTCCCGAGACTTAT 59.419 43.478 0.00 0.00 0.00 1.73
4322 6288 4.773674 TCTGTTTGGTTCCCGAGACTTATA 59.226 41.667 0.00 0.00 0.00 0.98
4323 6289 5.246656 TCTGTTTGGTTCCCGAGACTTATAA 59.753 40.000 0.00 0.00 0.00 0.98
4324 6290 5.484715 TGTTTGGTTCCCGAGACTTATAAG 58.515 41.667 11.05 11.05 0.00 1.73
4325 6291 5.012354 TGTTTGGTTCCCGAGACTTATAAGT 59.988 40.000 18.05 18.05 43.16 2.24
4358 6324 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
4369 6335 9.145442 ACAACTATAAGTCCCTATAAGTTCCTC 57.855 37.037 0.00 0.00 0.00 3.71
4370 6336 8.586744 CAACTATAAGTCCCTATAAGTTCCTCC 58.413 40.741 0.00 0.00 0.00 4.30
4371 6337 8.071235 ACTATAAGTCCCTATAAGTTCCTCCT 57.929 38.462 0.00 0.00 0.00 3.69
4372 6338 8.521301 ACTATAAGTCCCTATAAGTTCCTCCTT 58.479 37.037 0.00 0.00 0.00 3.36
4373 6339 5.959583 AAGTCCCTATAAGTTCCTCCTTG 57.040 43.478 0.00 0.00 0.00 3.61
4374 6340 5.222278 AGTCCCTATAAGTTCCTCCTTGA 57.778 43.478 0.00 0.00 0.00 3.02
4375 6341 5.212745 AGTCCCTATAAGTTCCTCCTTGAG 58.787 45.833 0.00 0.00 0.00 3.02
4376 6342 5.043281 AGTCCCTATAAGTTCCTCCTTGAGA 60.043 44.000 0.00 0.00 0.00 3.27
4377 6343 5.303333 GTCCCTATAAGTTCCTCCTTGAGAG 59.697 48.000 0.00 0.00 42.83 3.20
4378 6344 5.043281 TCCCTATAAGTTCCTCCTTGAGAGT 60.043 44.000 0.00 0.00 41.47 3.24
4379 6345 5.303333 CCCTATAAGTTCCTCCTTGAGAGTC 59.697 48.000 0.00 0.00 41.47 3.36
4380 6346 6.133356 CCTATAAGTTCCTCCTTGAGAGTCT 58.867 44.000 0.00 0.00 41.47 3.24
4381 6347 6.609616 CCTATAAGTTCCTCCTTGAGAGTCTT 59.390 42.308 0.00 0.00 41.47 3.01
4382 6348 7.780745 CCTATAAGTTCCTCCTTGAGAGTCTTA 59.219 40.741 0.00 0.00 41.47 2.10
4383 6349 9.362151 CTATAAGTTCCTCCTTGAGAGTCTTAT 57.638 37.037 0.00 0.00 41.47 1.73
4384 6350 6.943899 AAGTTCCTCCTTGAGAGTCTTATT 57.056 37.500 0.00 0.00 41.47 1.40
4385 6351 6.943899 AGTTCCTCCTTGAGAGTCTTATTT 57.056 37.500 0.00 0.00 41.47 1.40
4386 6352 6.941857 AGTTCCTCCTTGAGAGTCTTATTTC 58.058 40.000 0.00 0.00 41.47 2.17
4387 6353 6.498651 AGTTCCTCCTTGAGAGTCTTATTTCA 59.501 38.462 0.00 0.00 41.47 2.69
4388 6354 7.181845 AGTTCCTCCTTGAGAGTCTTATTTCAT 59.818 37.037 0.00 0.00 41.47 2.57
4389 6355 8.478877 GTTCCTCCTTGAGAGTCTTATTTCATA 58.521 37.037 0.00 0.00 41.47 2.15
4390 6356 8.609617 TCCTCCTTGAGAGTCTTATTTCATAA 57.390 34.615 0.00 0.00 41.47 1.90
4391 6357 8.700051 TCCTCCTTGAGAGTCTTATTTCATAAG 58.300 37.037 0.00 0.00 41.47 1.73
4392 6358 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
4393 6359 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
4394 6360 9.261035 TCCTTGAGAGTCTTATTTCATAAGTCT 57.739 33.333 0.00 3.77 41.61 3.24
4402 6368 8.897752 AGTCTTATTTCATAAGTCTCAAATGCC 58.102 33.333 3.93 0.00 42.21 4.40
4403 6369 8.131731 GTCTTATTTCATAAGTCTCAAATGCCC 58.868 37.037 3.93 0.00 42.21 5.36
4404 6370 7.833682 TCTTATTTCATAAGTCTCAAATGCCCA 59.166 33.333 3.93 0.00 42.21 5.36
4405 6371 5.643379 TTTCATAAGTCTCAAATGCCCAC 57.357 39.130 0.00 0.00 0.00 4.61
4406 6372 4.574674 TCATAAGTCTCAAATGCCCACT 57.425 40.909 0.00 0.00 0.00 4.00
4407 6373 4.922206 TCATAAGTCTCAAATGCCCACTT 58.078 39.130 0.00 0.00 0.00 3.16
4408 6374 5.324409 TCATAAGTCTCAAATGCCCACTTT 58.676 37.500 0.00 0.00 0.00 2.66
4409 6375 6.480763 TCATAAGTCTCAAATGCCCACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
4410 6376 6.945435 TCATAAGTCTCAAATGCCCACTTTAA 59.055 34.615 0.00 0.00 0.00 1.52
4411 6377 5.712152 AAGTCTCAAATGCCCACTTTAAG 57.288 39.130 0.00 0.00 0.00 1.85
4412 6378 4.729868 AGTCTCAAATGCCCACTTTAAGT 58.270 39.130 0.00 0.00 0.00 2.24
4413 6379 4.762251 AGTCTCAAATGCCCACTTTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
4414 6380 4.762251 GTCTCAAATGCCCACTTTAAGTCT 59.238 41.667 0.00 0.00 0.00 3.24
4415 6381 5.003804 TCTCAAATGCCCACTTTAAGTCTC 58.996 41.667 0.00 0.00 0.00 3.36
4416 6382 4.985538 TCAAATGCCCACTTTAAGTCTCT 58.014 39.130 0.00 0.00 0.00 3.10
4417 6383 6.013725 TCTCAAATGCCCACTTTAAGTCTCTA 60.014 38.462 0.00 0.00 0.00 2.43
4418 6384 6.721318 TCAAATGCCCACTTTAAGTCTCTAT 58.279 36.000 0.00 0.00 0.00 1.98
4419 6385 7.857456 TCAAATGCCCACTTTAAGTCTCTATA 58.143 34.615 0.00 0.00 0.00 1.31
4420 6386 8.325787 TCAAATGCCCACTTTAAGTCTCTATAA 58.674 33.333 0.00 0.00 0.00 0.98
4421 6387 8.616076 CAAATGCCCACTTTAAGTCTCTATAAG 58.384 37.037 0.00 0.00 0.00 1.73
4422 6388 6.869206 TGCCCACTTTAAGTCTCTATAAGT 57.131 37.500 0.00 0.00 0.00 2.24
4423 6389 6.875076 TGCCCACTTTAAGTCTCTATAAGTC 58.125 40.000 0.00 0.00 0.00 3.01
4424 6390 6.127140 TGCCCACTTTAAGTCTCTATAAGTCC 60.127 42.308 0.00 0.00 0.00 3.85
4425 6391 6.098552 GCCCACTTTAAGTCTCTATAAGTCCT 59.901 42.308 0.00 0.00 0.00 3.85
4426 6392 7.364851 GCCCACTTTAAGTCTCTATAAGTCCTT 60.365 40.741 0.00 0.00 0.00 3.36
4427 6393 8.198778 CCCACTTTAAGTCTCTATAAGTCCTTC 58.801 40.741 0.00 0.00 0.00 3.46
4428 6394 8.750298 CCACTTTAAGTCTCTATAAGTCCTTCA 58.250 37.037 0.00 0.00 0.00 3.02
4445 6411 8.525290 AGTCCTTCATGTTTAATTTAGATGGG 57.475 34.615 0.00 0.00 0.00 4.00
4446 6412 8.336235 AGTCCTTCATGTTTAATTTAGATGGGA 58.664 33.333 0.00 0.00 0.00 4.37
4447 6413 8.406297 GTCCTTCATGTTTAATTTAGATGGGAC 58.594 37.037 0.00 0.00 0.00 4.46
4448 6414 8.336235 TCCTTCATGTTTAATTTAGATGGGACT 58.664 33.333 0.00 0.00 0.00 3.85
4449 6415 8.971073 CCTTCATGTTTAATTTAGATGGGACTT 58.029 33.333 0.00 0.00 0.00 3.01
4488 6454 6.408107 GTCCCTAGACTAATAAGTTCCTGG 57.592 45.833 0.00 0.00 40.10 4.45
4489 6455 6.134754 GTCCCTAGACTAATAAGTTCCTGGA 58.865 44.000 0.00 0.00 40.10 3.86
4490 6456 6.610425 GTCCCTAGACTAATAAGTTCCTGGAA 59.390 42.308 4.68 4.68 40.10 3.53
4491 6457 7.125356 GTCCCTAGACTAATAAGTTCCTGGAAA 59.875 40.741 11.40 0.00 40.10 3.13
4492 6458 7.125356 TCCCTAGACTAATAAGTTCCTGGAAAC 59.875 40.741 11.40 5.85 35.56 2.78
4493 6459 7.093024 CCCTAGACTAATAAGTTCCTGGAAACA 60.093 40.741 11.40 0.00 35.56 2.83
4494 6460 8.319146 CCTAGACTAATAAGTTCCTGGAAACAA 58.681 37.037 11.40 0.00 36.30 2.83
4495 6461 9.720769 CTAGACTAATAAGTTCCTGGAAACAAA 57.279 33.333 11.40 0.00 36.30 2.83
4496 6462 8.392372 AGACTAATAAGTTCCTGGAAACAAAC 57.608 34.615 11.40 0.00 36.30 2.93
4497 6463 7.996644 AGACTAATAAGTTCCTGGAAACAAACA 59.003 33.333 11.40 0.00 36.30 2.83
4498 6464 7.937649 ACTAATAAGTTCCTGGAAACAAACAC 58.062 34.615 11.40 0.00 34.25 3.32
4499 6465 5.784578 ATAAGTTCCTGGAAACAAACACC 57.215 39.130 11.40 0.00 42.06 4.16
4500 6466 2.384828 AGTTCCTGGAAACAAACACCC 58.615 47.619 11.40 0.00 42.06 4.61
4501 6467 2.024369 AGTTCCTGGAAACAAACACCCT 60.024 45.455 11.40 0.00 42.06 4.34
4502 6468 2.764010 GTTCCTGGAAACAAACACCCTT 59.236 45.455 11.40 0.00 42.06 3.95
4503 6469 3.108847 TCCTGGAAACAAACACCCTTT 57.891 42.857 0.00 0.00 42.06 3.11
4504 6470 3.445987 TCCTGGAAACAAACACCCTTTT 58.554 40.909 0.00 0.00 42.06 2.27
4505 6471 4.611367 TCCTGGAAACAAACACCCTTTTA 58.389 39.130 0.00 0.00 42.06 1.52
4506 6472 4.647399 TCCTGGAAACAAACACCCTTTTAG 59.353 41.667 0.00 0.00 42.06 1.85
4507 6473 4.368315 CTGGAAACAAACACCCTTTTAGC 58.632 43.478 0.00 0.00 42.06 3.09
4508 6474 4.027437 TGGAAACAAACACCCTTTTAGCT 58.973 39.130 0.00 0.00 37.44 3.32
4509 6475 5.202004 TGGAAACAAACACCCTTTTAGCTA 58.798 37.500 0.00 0.00 37.44 3.32
4510 6476 5.300792 TGGAAACAAACACCCTTTTAGCTAG 59.699 40.000 0.00 0.00 37.44 3.42
4511 6477 5.301045 GGAAACAAACACCCTTTTAGCTAGT 59.699 40.000 0.00 0.00 0.00 2.57
4512 6478 6.183360 GGAAACAAACACCCTTTTAGCTAGTT 60.183 38.462 0.00 0.00 0.00 2.24
4513 6479 6.785337 AACAAACACCCTTTTAGCTAGTTT 57.215 33.333 0.00 0.00 0.00 2.66
4514 6480 6.144078 ACAAACACCCTTTTAGCTAGTTTG 57.856 37.500 21.57 21.57 45.71 2.93
4515 6481 5.889289 ACAAACACCCTTTTAGCTAGTTTGA 59.111 36.000 26.43 0.00 44.06 2.69
4516 6482 6.378848 ACAAACACCCTTTTAGCTAGTTTGAA 59.621 34.615 26.43 5.37 44.06 2.69
4517 6483 6.387041 AACACCCTTTTAGCTAGTTTGAAC 57.613 37.500 0.00 0.00 0.00 3.18
4518 6484 5.442391 ACACCCTTTTAGCTAGTTTGAACA 58.558 37.500 0.00 0.00 0.00 3.18
4519 6485 5.298527 ACACCCTTTTAGCTAGTTTGAACAC 59.701 40.000 0.00 0.00 0.00 3.32
4520 6486 4.514066 ACCCTTTTAGCTAGTTTGAACACG 59.486 41.667 0.00 0.00 0.00 4.49
4521 6487 4.514066 CCCTTTTAGCTAGTTTGAACACGT 59.486 41.667 0.00 0.00 0.00 4.49
4522 6488 5.333875 CCCTTTTAGCTAGTTTGAACACGTC 60.334 44.000 0.00 0.00 0.00 4.34
4523 6489 5.235616 CCTTTTAGCTAGTTTGAACACGTCA 59.764 40.000 0.00 0.00 0.00 4.35
4524 6490 6.073222 CCTTTTAGCTAGTTTGAACACGTCAT 60.073 38.462 0.00 0.00 35.70 3.06
4525 6491 6.462073 TTTAGCTAGTTTGAACACGTCATC 57.538 37.500 0.00 0.00 35.70 2.92
4526 6492 3.326747 AGCTAGTTTGAACACGTCATCC 58.673 45.455 0.00 0.00 35.70 3.51
4527 6493 3.006967 AGCTAGTTTGAACACGTCATCCT 59.993 43.478 0.00 0.00 35.70 3.24
4528 6494 4.219944 AGCTAGTTTGAACACGTCATCCTA 59.780 41.667 0.00 0.00 35.70 2.94
4529 6495 4.563184 GCTAGTTTGAACACGTCATCCTAG 59.437 45.833 0.00 0.00 38.62 3.02
4530 6496 4.602340 AGTTTGAACACGTCATCCTAGT 57.398 40.909 0.00 0.00 35.70 2.57
4531 6497 4.957296 AGTTTGAACACGTCATCCTAGTT 58.043 39.130 0.00 0.00 35.70 2.24
4532 6498 6.092955 AGTTTGAACACGTCATCCTAGTTA 57.907 37.500 0.00 0.00 35.70 2.24
4533 6499 6.698380 AGTTTGAACACGTCATCCTAGTTAT 58.302 36.000 0.00 0.00 35.70 1.89
4534 6500 7.833786 AGTTTGAACACGTCATCCTAGTTATA 58.166 34.615 0.00 0.00 35.70 0.98
4535 6501 8.308931 AGTTTGAACACGTCATCCTAGTTATAA 58.691 33.333 0.00 0.00 35.70 0.98
4536 6502 8.928733 GTTTGAACACGTCATCCTAGTTATAAA 58.071 33.333 0.00 0.00 35.70 1.40
4537 6503 9.491675 TTTGAACACGTCATCCTAGTTATAAAA 57.508 29.630 0.00 0.00 35.70 1.52
4538 6504 9.661563 TTGAACACGTCATCCTAGTTATAAAAT 57.338 29.630 0.00 0.00 35.70 1.82
4594 6560 9.787532 TTGTGTCTTTCATTTTCTTTAGTTCAG 57.212 29.630 0.00 0.00 0.00 3.02
4595 6561 8.956426 TGTGTCTTTCATTTTCTTTAGTTCAGT 58.044 29.630 0.00 0.00 0.00 3.41
4596 6562 9.788960 GTGTCTTTCATTTTCTTTAGTTCAGTT 57.211 29.630 0.00 0.00 0.00 3.16
4671 6638 6.665992 ATAGGCAAGAACGATCCTTACATA 57.334 37.500 0.00 0.00 0.00 2.29
4754 6721 8.489489 CCTCCCTCTAATTACATGCATATATGT 58.511 37.037 14.14 0.00 43.34 2.29
4790 6758 7.148507 CGAAAAGCTGATGTCATCCTATATTCC 60.149 40.741 10.36 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.613437 TGATGCGATGCGAGGAATCTA 59.387 47.619 0.00 0.00 0.00 1.98
40 41 0.036010 AGTTGGTGATGAGCTTCCCG 60.036 55.000 0.00 0.00 0.00 5.14
42 43 1.003580 TGGAGTTGGTGATGAGCTTCC 59.996 52.381 0.00 0.00 0.00 3.46
70 71 1.401761 TGCCACAAGTGCTCAACAAT 58.598 45.000 0.00 0.00 0.00 2.71
137 138 3.244911 CCACAGGGTCCAACTGAAGTAAT 60.245 47.826 2.44 0.00 39.24 1.89
156 158 6.660887 AACATTCAAATTCAAACACACCAC 57.339 33.333 0.00 0.00 0.00 4.16
232 234 7.385752 ACAATGTGCCAATTCAAAACTTGATAG 59.614 33.333 0.00 0.00 39.84 2.08
237 239 5.184711 ACACAATGTGCCAATTCAAAACTT 58.815 33.333 14.01 0.00 36.98 2.66
249 251 5.734855 ACTCGATATTAACACAATGTGCC 57.265 39.130 14.01 0.00 36.98 5.01
251 253 9.773328 ATTTCAACTCGATATTAACACAATGTG 57.227 29.630 12.40 12.40 39.75 3.21
304 306 3.182372 GCAAACAAACTTCTTTGCCGATC 59.818 43.478 4.39 0.00 44.30 3.69
307 309 2.996691 GCAAACAAACTTCTTTGCCG 57.003 45.000 4.39 0.00 44.30 5.69
325 327 4.098196 AGAAGGAGTAACTCATAACTCGGC 59.902 45.833 0.00 0.00 42.51 5.54
345 375 9.877178 GGACACTTTTAGATCATTCTTAGAGAA 57.123 33.333 0.00 0.00 38.78 2.87
371 401 6.409349 CCCCCTCCCTCTGTAAACTTTTATAG 60.409 46.154 0.31 0.31 34.40 1.31
393 423 7.744087 AAACTTTATTTTTCAGCAAATCCCC 57.256 32.000 0.00 0.00 0.00 4.81
397 427 9.283768 CCCCTAAAACTTTATTTTTCAGCAAAT 57.716 29.630 0.00 0.00 31.15 2.32
398 428 8.487028 TCCCCTAAAACTTTATTTTTCAGCAAA 58.513 29.630 0.00 0.00 31.15 3.68
399 429 8.024145 TCCCCTAAAACTTTATTTTTCAGCAA 57.976 30.769 0.00 0.00 31.15 3.91
400 430 7.604657 TCCCCTAAAACTTTATTTTTCAGCA 57.395 32.000 0.00 0.00 31.15 4.41
401 431 8.935844 CATTCCCCTAAAACTTTATTTTTCAGC 58.064 33.333 0.00 0.00 31.15 4.26
402 432 9.435688 CCATTCCCCTAAAACTTTATTTTTCAG 57.564 33.333 0.00 0.00 31.15 3.02
403 433 8.379331 CCCATTCCCCTAAAACTTTATTTTTCA 58.621 33.333 0.00 0.00 31.15 2.69
404 434 7.827236 CCCCATTCCCCTAAAACTTTATTTTTC 59.173 37.037 0.00 0.00 31.15 2.29
405 435 7.517953 TCCCCATTCCCCTAAAACTTTATTTTT 59.482 33.333 0.00 0.00 33.27 1.94
406 436 7.026247 TCCCCATTCCCCTAAAACTTTATTTT 58.974 34.615 0.00 0.00 0.00 1.82
407 437 6.576360 TCCCCATTCCCCTAAAACTTTATTT 58.424 36.000 0.00 0.00 0.00 1.40
408 438 6.173676 TCCCCATTCCCCTAAAACTTTATT 57.826 37.500 0.00 0.00 0.00 1.40
409 439 5.341708 CCTCCCCATTCCCCTAAAACTTTAT 60.342 44.000 0.00 0.00 0.00 1.40
410 440 4.016944 CCTCCCCATTCCCCTAAAACTTTA 60.017 45.833 0.00 0.00 0.00 1.85
411 441 3.245984 CCTCCCCATTCCCCTAAAACTTT 60.246 47.826 0.00 0.00 0.00 2.66
426 456 0.728843 ATCTCTAAACCCCCTCCCCA 59.271 55.000 0.00 0.00 0.00 4.96
429 459 1.769465 GGACATCTCTAAACCCCCTCC 59.231 57.143 0.00 0.00 0.00 4.30
430 460 1.769465 GGGACATCTCTAAACCCCCTC 59.231 57.143 0.00 0.00 35.00 4.30
431 461 1.369983 AGGGACATCTCTAAACCCCCT 59.630 52.381 0.00 0.00 41.26 4.79
432 462 1.894699 AGGGACATCTCTAAACCCCC 58.105 55.000 0.00 0.00 41.26 5.40
433 463 6.296489 CCATTATAGGGACATCTCTAAACCCC 60.296 46.154 0.00 0.00 41.26 4.95
435 465 7.554959 TCCATTATAGGGACATCTCTAAACC 57.445 40.000 0.00 0.00 0.00 3.27
440 470 9.621239 TCTTAAATCCATTATAGGGACATCTCT 57.379 33.333 0.00 0.00 37.23 3.10
481 1492 2.634982 TCATGCGCACATCCTTTTTC 57.365 45.000 14.90 0.00 32.87 2.29
486 1497 2.108514 CCGTTCATGCGCACATCCT 61.109 57.895 14.90 0.00 32.87 3.24
553 1828 4.327357 GTGGTGTCGACTGTCATTATTCTG 59.673 45.833 17.92 0.00 0.00 3.02
557 1832 3.953712 TGTGGTGTCGACTGTCATTAT 57.046 42.857 17.92 0.00 0.00 1.28
850 2756 0.912486 AAAGGACGGGGAGGAAGATG 59.088 55.000 0.00 0.00 0.00 2.90
911 2817 1.040646 TCGAGCTAGGCGAATGGAAT 58.959 50.000 0.00 0.00 34.45 3.01
919 2825 4.624293 CTCACATCGAGCTAGGCG 57.376 61.111 0.00 0.00 34.18 5.52
955 2869 1.484240 CTGCTGGGGATATAGCTAGGC 59.516 57.143 0.00 0.00 40.52 3.93
1054 2975 1.838073 GCCCCGTGGAAGAGGAAGAA 61.838 60.000 0.00 0.00 0.00 2.52
1071 2992 4.357279 ACTGGAGCTGGGCTTGCC 62.357 66.667 2.49 2.49 39.88 4.52
1103 3024 4.821589 CGCCCTCCTCCGACAAGC 62.822 72.222 0.00 0.00 0.00 4.01
1131 3052 0.598065 CGGACTTGAAGGCCAAAAGG 59.402 55.000 18.75 0.00 46.60 3.11
1206 3127 4.988598 ACGCCCGTCCAGTTGCAG 62.989 66.667 0.00 0.00 0.00 4.41
1631 3552 2.434359 GCCCGGAGAGGTTGTTCG 60.434 66.667 0.73 0.00 38.74 3.95
1740 3661 1.376037 GTTGGGGAGAAGGCAGTCG 60.376 63.158 0.00 0.00 0.00 4.18
1743 3664 1.001641 CAGGTTGGGGAGAAGGCAG 60.002 63.158 0.00 0.00 0.00 4.85
1816 3737 1.716172 GGAGCTTCGTCGAATTGGC 59.284 57.895 8.36 8.78 0.00 4.52
1821 3742 1.138883 CCATCGGAGCTTCGTCGAA 59.861 57.895 15.46 7.57 36.49 3.71
2364 4285 1.005340 GATCGAGCTTCAGCAGGTTG 58.995 55.000 0.75 0.00 45.16 3.77
2415 4336 4.400961 AGCTCCGACAAGCCTGCC 62.401 66.667 1.49 0.00 43.56 4.85
2418 4339 2.977178 CTCAGCTCCGACAAGCCT 59.023 61.111 0.00 0.00 43.56 4.58
2488 4409 2.721859 CATCTCGCCGATGGTCGA 59.278 61.111 0.22 3.20 44.69 4.20
2535 4456 2.812499 GTGCCCGAGAGCCGATTA 59.188 61.111 0.00 0.00 41.76 1.75
2891 4812 3.357079 GCCGGTTGTGGAGCACTG 61.357 66.667 1.90 0.00 35.11 3.66
3099 5020 2.407210 GTCGCCTCAGAGAGCTCG 59.593 66.667 8.37 0.00 34.09 5.03
3354 5275 2.037136 GCTGCCGTTGCTCATCAGT 61.037 57.895 0.00 0.00 38.71 3.41
3362 5283 4.742201 TCTCGAGGCTGCCGTTGC 62.742 66.667 13.96 3.49 38.26 4.17
3608 5529 2.125147 CGGTGATGCCATCGTGGT 60.125 61.111 0.00 0.00 41.71 4.16
3610 5531 3.576356 GCCGGTGATGCCATCGTG 61.576 66.667 1.90 0.00 44.96 4.35
3678 5599 3.936453 TGAATTTACCTGGTGCGATGTAC 59.064 43.478 10.23 0.00 0.00 2.90
3698 5619 9.299963 CATTTGTTTCTGTTAATTTGACTGTGA 57.700 29.630 0.00 0.00 0.00 3.58
3699 5620 8.057742 GCATTTGTTTCTGTTAATTTGACTGTG 58.942 33.333 0.00 0.00 0.00 3.66
3731 5676 3.545124 AAGAACGCCGGCCACATCA 62.545 57.895 23.46 0.00 0.00 3.07
3732 5677 2.746277 AAGAACGCCGGCCACATC 60.746 61.111 23.46 13.87 0.00 3.06
3733 5678 2.746277 GAAGAACGCCGGCCACAT 60.746 61.111 23.46 3.88 0.00 3.21
3734 5679 3.876589 GAGAAGAACGCCGGCCACA 62.877 63.158 23.46 0.00 0.00 4.17
3735 5680 2.221906 TAGAGAAGAACGCCGGCCAC 62.222 60.000 23.46 12.55 0.00 5.01
3736 5681 1.537814 TTAGAGAAGAACGCCGGCCA 61.538 55.000 23.46 0.00 0.00 5.36
3737 5682 1.082679 GTTAGAGAAGAACGCCGGCC 61.083 60.000 23.46 7.02 0.00 6.13
3738 5683 0.389426 TGTTAGAGAAGAACGCCGGC 60.389 55.000 19.07 19.07 0.00 6.13
3739 5684 2.295253 ATGTTAGAGAAGAACGCCGG 57.705 50.000 0.00 0.00 0.00 6.13
3740 5685 4.151689 TGAAAATGTTAGAGAAGAACGCCG 59.848 41.667 0.00 0.00 0.00 6.46
3741 5686 5.607119 TGAAAATGTTAGAGAAGAACGCC 57.393 39.130 0.00 0.00 0.00 5.68
3742 5687 6.024049 CCATGAAAATGTTAGAGAAGAACGC 58.976 40.000 0.00 0.00 0.00 4.84
4199 6165 3.329386 CACAACCTCATGTCAGAACGAT 58.671 45.455 0.00 0.00 0.00 3.73
4213 6179 5.675538 GCTGAACTATATCTTCCACAACCT 58.324 41.667 0.00 0.00 0.00 3.50
4240 6206 7.282585 TGAATAGAGGATCAAAATGTGTAGGG 58.717 38.462 0.00 0.00 37.82 3.53
4270 6236 9.205719 GAGACTTTTTAAAGACTTCGGACTTAT 57.794 33.333 9.09 0.00 40.23 1.73
4271 6237 8.419442 AGAGACTTTTTAAAGACTTCGGACTTA 58.581 33.333 9.09 0.00 40.23 2.24
4272 6238 7.273712 AGAGACTTTTTAAAGACTTCGGACTT 58.726 34.615 9.09 0.00 40.23 3.01
4273 6239 6.818233 AGAGACTTTTTAAAGACTTCGGACT 58.182 36.000 9.09 0.00 40.23 3.85
4274 6240 8.760103 ATAGAGACTTTTTAAAGACTTCGGAC 57.240 34.615 9.09 0.00 40.23 4.79
4275 6241 8.804204 AGATAGAGACTTTTTAAAGACTTCGGA 58.196 33.333 9.09 0.00 40.23 4.55
4276 6242 8.865001 CAGATAGAGACTTTTTAAAGACTTCGG 58.135 37.037 9.09 1.45 40.23 4.30
4277 6243 9.413048 ACAGATAGAGACTTTTTAAAGACTTCG 57.587 33.333 9.09 3.61 40.23 3.79
4282 6248 9.847224 ACCAAACAGATAGAGACTTTTTAAAGA 57.153 29.630 9.09 0.00 39.31 2.52
4285 6251 9.063615 GGAACCAAACAGATAGAGACTTTTTAA 57.936 33.333 0.00 0.00 0.00 1.52
4286 6252 8.617290 GGAACCAAACAGATAGAGACTTTTTA 57.383 34.615 0.00 0.00 0.00 1.52
4287 6253 7.511959 GGAACCAAACAGATAGAGACTTTTT 57.488 36.000 0.00 0.00 0.00 1.94
4299 6265 8.885052 ACTTATAAGTCTCGGGAACCAAACAGA 61.885 40.741 12.50 0.00 42.68 3.41
4300 6266 6.796515 ACTTATAAGTCTCGGGAACCAAACAG 60.797 42.308 12.50 0.00 42.68 3.16
4301 6267 5.012354 ACTTATAAGTCTCGGGAACCAAACA 59.988 40.000 12.50 0.00 42.68 2.83
4302 6268 5.485620 ACTTATAAGTCTCGGGAACCAAAC 58.514 41.667 12.50 0.00 42.68 2.93
4303 6269 5.750352 ACTTATAAGTCTCGGGAACCAAA 57.250 39.130 12.50 0.00 42.68 3.28
4332 6298 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
4343 6309 9.145442 GAGGAACTTATAGGGACTTATAGTTGT 57.855 37.037 0.00 0.00 41.55 3.32
4344 6310 8.586744 GGAGGAACTTATAGGGACTTATAGTTG 58.413 40.741 0.00 0.00 41.55 3.16
4345 6311 8.521301 AGGAGGAACTTATAGGGACTTATAGTT 58.479 37.037 0.00 0.00 41.55 2.24
4346 6312 8.071235 AGGAGGAACTTATAGGGACTTATAGT 57.929 38.462 0.00 0.00 41.55 2.12
4347 6313 8.808092 CAAGGAGGAACTTATAGGGACTTATAG 58.192 40.741 0.00 0.00 41.55 1.31
4348 6314 8.517047 TCAAGGAGGAACTTATAGGGACTTATA 58.483 37.037 0.00 0.00 41.55 0.98
4349 6315 7.371043 TCAAGGAGGAACTTATAGGGACTTAT 58.629 38.462 0.00 0.00 41.55 1.73
4350 6316 6.748969 TCAAGGAGGAACTTATAGGGACTTA 58.251 40.000 0.00 0.00 41.55 2.24
4351 6317 5.600749 TCAAGGAGGAACTTATAGGGACTT 58.399 41.667 0.00 0.00 41.55 3.01
4352 6318 5.043281 TCTCAAGGAGGAACTTATAGGGACT 60.043 44.000 0.00 0.00 41.55 3.85
4353 6319 5.209659 TCTCAAGGAGGAACTTATAGGGAC 58.790 45.833 0.00 0.00 41.55 4.46
4354 6320 5.043281 ACTCTCAAGGAGGAACTTATAGGGA 60.043 44.000 0.00 0.00 45.83 4.20
4355 6321 5.212745 ACTCTCAAGGAGGAACTTATAGGG 58.787 45.833 0.00 0.00 45.83 3.53
4356 6322 6.133356 AGACTCTCAAGGAGGAACTTATAGG 58.867 44.000 0.00 0.00 45.83 2.57
4357 6323 7.654022 AAGACTCTCAAGGAGGAACTTATAG 57.346 40.000 0.00 0.00 45.83 1.31
4358 6324 9.716556 AATAAGACTCTCAAGGAGGAACTTATA 57.283 33.333 14.82 0.00 45.83 0.98
4359 6325 8.616799 AATAAGACTCTCAAGGAGGAACTTAT 57.383 34.615 0.00 0.00 45.83 1.73
4360 6326 8.437274 AAATAAGACTCTCAAGGAGGAACTTA 57.563 34.615 0.00 0.00 45.83 2.24
4361 6327 6.943899 AATAAGACTCTCAAGGAGGAACTT 57.056 37.500 0.00 0.00 45.83 2.66
4362 6328 6.498651 TGAAATAAGACTCTCAAGGAGGAACT 59.501 38.462 0.00 0.00 45.83 3.01
4363 6329 6.702329 TGAAATAAGACTCTCAAGGAGGAAC 58.298 40.000 0.00 0.00 45.83 3.62
4364 6330 6.935240 TGAAATAAGACTCTCAAGGAGGAA 57.065 37.500 0.00 0.00 45.83 3.36
4365 6331 8.609617 TTATGAAATAAGACTCTCAAGGAGGA 57.390 34.615 0.00 0.00 38.94 3.71
4380 6346 7.615365 AGTGGGCATTTGAGACTTATGAAATAA 59.385 33.333 0.00 0.00 36.20 1.40
4381 6347 7.118723 AGTGGGCATTTGAGACTTATGAAATA 58.881 34.615 0.00 0.00 0.00 1.40
4382 6348 5.954150 AGTGGGCATTTGAGACTTATGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
4383 6349 5.324409 AGTGGGCATTTGAGACTTATGAAA 58.676 37.500 0.00 0.00 0.00 2.69
4384 6350 4.922206 AGTGGGCATTTGAGACTTATGAA 58.078 39.130 0.00 0.00 0.00 2.57
4385 6351 4.574674 AGTGGGCATTTGAGACTTATGA 57.425 40.909 0.00 0.00 0.00 2.15
4386 6352 5.649782 AAAGTGGGCATTTGAGACTTATG 57.350 39.130 0.00 0.00 0.00 1.90
4387 6353 6.948309 ACTTAAAGTGGGCATTTGAGACTTAT 59.052 34.615 7.52 0.00 30.26 1.73
4388 6354 6.303839 ACTTAAAGTGGGCATTTGAGACTTA 58.696 36.000 7.52 0.00 30.26 2.24
4389 6355 5.140454 ACTTAAAGTGGGCATTTGAGACTT 58.860 37.500 7.52 0.00 30.26 3.01
4390 6356 4.729868 ACTTAAAGTGGGCATTTGAGACT 58.270 39.130 7.52 0.00 30.26 3.24
4391 6357 4.762251 AGACTTAAAGTGGGCATTTGAGAC 59.238 41.667 7.52 3.04 30.26 3.36
4392 6358 4.985538 AGACTTAAAGTGGGCATTTGAGA 58.014 39.130 7.52 0.00 30.26 3.27
4393 6359 5.006386 AGAGACTTAAAGTGGGCATTTGAG 58.994 41.667 0.00 0.00 31.53 3.02
4394 6360 4.985538 AGAGACTTAAAGTGGGCATTTGA 58.014 39.130 0.00 0.00 0.00 2.69
4395 6361 8.506168 TTATAGAGACTTAAAGTGGGCATTTG 57.494 34.615 0.00 0.00 0.00 2.32
4396 6362 8.329502 ACTTATAGAGACTTAAAGTGGGCATTT 58.670 33.333 0.00 0.00 0.00 2.32
4397 6363 7.862675 ACTTATAGAGACTTAAAGTGGGCATT 58.137 34.615 0.00 0.00 0.00 3.56
4398 6364 7.419172 GGACTTATAGAGACTTAAAGTGGGCAT 60.419 40.741 0.00 0.00 30.83 4.40
4399 6365 6.127140 GGACTTATAGAGACTTAAAGTGGGCA 60.127 42.308 0.00 0.00 30.83 5.36
4400 6366 6.098552 AGGACTTATAGAGACTTAAAGTGGGC 59.901 42.308 0.00 0.00 30.83 5.36
4401 6367 7.663043 AGGACTTATAGAGACTTAAAGTGGG 57.337 40.000 0.00 0.00 30.83 4.61
4402 6368 8.750298 TGAAGGACTTATAGAGACTTAAAGTGG 58.250 37.037 0.00 0.00 30.83 4.00
4419 6385 8.971073 CCCATCTAAATTAAACATGAAGGACTT 58.029 33.333 0.00 0.00 0.00 3.01
4420 6386 8.336235 TCCCATCTAAATTAAACATGAAGGACT 58.664 33.333 0.00 0.00 0.00 3.85
4421 6387 8.406297 GTCCCATCTAAATTAAACATGAAGGAC 58.594 37.037 0.00 0.00 0.00 3.85
4422 6388 8.336235 AGTCCCATCTAAATTAAACATGAAGGA 58.664 33.333 0.00 0.00 0.00 3.36
4423 6389 8.525290 AGTCCCATCTAAATTAAACATGAAGG 57.475 34.615 0.00 0.00 0.00 3.46
4460 6426 9.779951 AGGAACTTATTAGTCTAGGGACTTAAA 57.220 33.333 3.98 0.00 43.66 1.52
4461 6427 9.198475 CAGGAACTTATTAGTCTAGGGACTTAA 57.802 37.037 3.98 0.00 44.15 1.85
4462 6428 7.783596 CCAGGAACTTATTAGTCTAGGGACTTA 59.216 40.741 3.98 0.00 44.15 2.24
4463 6429 6.612049 CCAGGAACTTATTAGTCTAGGGACTT 59.388 42.308 3.98 0.00 44.15 3.01
4464 6430 6.068379 TCCAGGAACTTATTAGTCTAGGGACT 60.068 42.308 4.12 4.12 46.89 3.85
4465 6431 6.134754 TCCAGGAACTTATTAGTCTAGGGAC 58.865 44.000 0.00 0.00 38.84 4.46
4466 6432 6.351317 TCCAGGAACTTATTAGTCTAGGGA 57.649 41.667 0.00 0.00 34.60 4.20
4467 6433 7.093024 TGTTTCCAGGAACTTATTAGTCTAGGG 60.093 40.741 0.00 0.00 34.60 3.53
4468 6434 7.848128 TGTTTCCAGGAACTTATTAGTCTAGG 58.152 38.462 0.00 0.00 34.60 3.02
4469 6435 9.720769 TTTGTTTCCAGGAACTTATTAGTCTAG 57.279 33.333 0.00 0.00 34.60 2.43
4470 6436 9.498176 GTTTGTTTCCAGGAACTTATTAGTCTA 57.502 33.333 0.00 0.00 34.60 2.59
4471 6437 7.996644 TGTTTGTTTCCAGGAACTTATTAGTCT 59.003 33.333 0.00 0.00 34.60 3.24
4472 6438 8.074370 GTGTTTGTTTCCAGGAACTTATTAGTC 58.926 37.037 0.00 0.00 34.60 2.59
4473 6439 7.013942 GGTGTTTGTTTCCAGGAACTTATTAGT 59.986 37.037 0.00 0.00 34.60 2.24
4474 6440 7.368059 GGTGTTTGTTTCCAGGAACTTATTAG 58.632 38.462 0.00 0.00 34.60 1.73
4475 6441 6.265876 GGGTGTTTGTTTCCAGGAACTTATTA 59.734 38.462 0.00 0.00 34.60 0.98
4476 6442 5.069914 GGGTGTTTGTTTCCAGGAACTTATT 59.930 40.000 0.00 0.00 34.60 1.40
4477 6443 4.587262 GGGTGTTTGTTTCCAGGAACTTAT 59.413 41.667 0.00 0.00 34.60 1.73
4478 6444 3.955551 GGGTGTTTGTTTCCAGGAACTTA 59.044 43.478 0.00 0.00 34.60 2.24
4479 6445 2.764010 GGGTGTTTGTTTCCAGGAACTT 59.236 45.455 0.00 0.00 34.60 2.66
4480 6446 2.024369 AGGGTGTTTGTTTCCAGGAACT 60.024 45.455 0.00 0.00 43.88 3.01
4481 6447 2.384828 AGGGTGTTTGTTTCCAGGAAC 58.615 47.619 0.00 0.00 0.00 3.62
4482 6448 2.838637 AGGGTGTTTGTTTCCAGGAA 57.161 45.000 0.00 0.00 0.00 3.36
4483 6449 2.838637 AAGGGTGTTTGTTTCCAGGA 57.161 45.000 0.00 0.00 0.00 3.86
4484 6450 3.904800 AAAAGGGTGTTTGTTTCCAGG 57.095 42.857 0.00 0.00 0.00 4.45
4485 6451 4.099419 AGCTAAAAGGGTGTTTGTTTCCAG 59.901 41.667 0.00 0.00 0.00 3.86
4486 6452 4.027437 AGCTAAAAGGGTGTTTGTTTCCA 58.973 39.130 0.00 0.00 0.00 3.53
4487 6453 4.665833 AGCTAAAAGGGTGTTTGTTTCC 57.334 40.909 0.00 0.00 0.00 3.13
4488 6454 6.387041 ACTAGCTAAAAGGGTGTTTGTTTC 57.613 37.500 0.00 0.00 0.00 2.78
4489 6455 6.785337 AACTAGCTAAAAGGGTGTTTGTTT 57.215 33.333 0.00 0.00 0.00 2.83
4490 6456 6.378848 TCAAACTAGCTAAAAGGGTGTTTGTT 59.621 34.615 21.91 6.59 41.64 2.83
4491 6457 5.889289 TCAAACTAGCTAAAAGGGTGTTTGT 59.111 36.000 21.91 1.58 41.64 2.83
4492 6458 6.385649 TCAAACTAGCTAAAAGGGTGTTTG 57.614 37.500 19.03 19.03 42.03 2.93
4493 6459 6.378848 TGTTCAAACTAGCTAAAAGGGTGTTT 59.621 34.615 0.00 0.00 0.00 2.83
4494 6460 5.889289 TGTTCAAACTAGCTAAAAGGGTGTT 59.111 36.000 0.00 0.00 0.00 3.32
4495 6461 5.298527 GTGTTCAAACTAGCTAAAAGGGTGT 59.701 40.000 0.00 0.00 0.00 4.16
4496 6462 5.560183 CGTGTTCAAACTAGCTAAAAGGGTG 60.560 44.000 0.00 0.00 0.00 4.61
4497 6463 4.514066 CGTGTTCAAACTAGCTAAAAGGGT 59.486 41.667 0.00 0.00 0.00 4.34
4498 6464 4.514066 ACGTGTTCAAACTAGCTAAAAGGG 59.486 41.667 0.00 0.00 0.00 3.95
4499 6465 5.235616 TGACGTGTTCAAACTAGCTAAAAGG 59.764 40.000 0.00 0.00 0.00 3.11
4500 6466 6.281848 TGACGTGTTCAAACTAGCTAAAAG 57.718 37.500 0.00 0.00 0.00 2.27
4501 6467 6.073440 GGATGACGTGTTCAAACTAGCTAAAA 60.073 38.462 0.00 0.00 37.92 1.52
4502 6468 5.407387 GGATGACGTGTTCAAACTAGCTAAA 59.593 40.000 0.00 0.00 37.92 1.85
4503 6469 4.927425 GGATGACGTGTTCAAACTAGCTAA 59.073 41.667 0.00 0.00 37.92 3.09
4504 6470 4.219944 AGGATGACGTGTTCAAACTAGCTA 59.780 41.667 0.00 0.00 37.92 3.32
4505 6471 3.006967 AGGATGACGTGTTCAAACTAGCT 59.993 43.478 0.00 0.00 37.92 3.32
4506 6472 3.326747 AGGATGACGTGTTCAAACTAGC 58.673 45.455 0.00 0.00 37.92 3.42
4507 6473 5.710984 ACTAGGATGACGTGTTCAAACTAG 58.289 41.667 0.00 4.34 43.56 2.57
4508 6474 5.717078 ACTAGGATGACGTGTTCAAACTA 57.283 39.130 0.00 0.00 37.92 2.24
4509 6475 4.602340 ACTAGGATGACGTGTTCAAACT 57.398 40.909 0.00 0.00 37.92 2.66
4510 6476 6.963049 ATAACTAGGATGACGTGTTCAAAC 57.037 37.500 0.00 0.00 37.92 2.93
4511 6477 9.491675 TTTTATAACTAGGATGACGTGTTCAAA 57.508 29.630 0.00 0.00 37.92 2.69
4512 6478 9.661563 ATTTTATAACTAGGATGACGTGTTCAA 57.338 29.630 0.00 0.00 37.92 2.69
4568 6534 9.787532 CTGAACTAAAGAAAATGAAAGACACAA 57.212 29.630 0.00 0.00 0.00 3.33
4569 6535 8.956426 ACTGAACTAAAGAAAATGAAAGACACA 58.044 29.630 0.00 0.00 0.00 3.72
4570 6536 9.788960 AACTGAACTAAAGAAAATGAAAGACAC 57.211 29.630 0.00 0.00 0.00 3.67
4603 6569 9.589461 TGGTAGTTATAAAAGTCCATTTCCAAA 57.411 29.630 0.00 0.00 0.00 3.28
4604 6570 9.589461 TTGGTAGTTATAAAAGTCCATTTCCAA 57.411 29.630 0.00 0.00 0.00 3.53
4605 6571 9.589461 TTTGGTAGTTATAAAAGTCCATTTCCA 57.411 29.630 0.00 0.00 0.00 3.53
4606 6572 9.850628 GTTTGGTAGTTATAAAAGTCCATTTCC 57.149 33.333 0.00 0.00 0.00 3.13
4718 6685 0.622136 TAGAGGGAGGAGTGCACGTA 59.378 55.000 12.01 0.00 0.00 3.57
4754 6721 5.790593 ACATCAGCTTTTCGTCCTTTAGTA 58.209 37.500 0.00 0.00 0.00 1.82
5052 7028 7.400599 AACTCACTGCAAACATCATAATCAT 57.599 32.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.