Multiple sequence alignment - TraesCS7A01G149500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G149500 chr7A 100.000 3194 0 0 1 3194 102547241 102544048 0.000000e+00 5899.0
1 TraesCS7A01G149500 chr7A 92.368 380 27 2 2553 2930 102544485 102544106 1.010000e-149 540.0
2 TraesCS7A01G149500 chr7A 92.368 380 27 2 2757 3136 102544689 102544312 1.010000e-149 540.0
3 TraesCS7A01G149500 chr7A 87.429 175 20 2 2553 2725 102544280 102544106 1.940000e-47 200.0
4 TraesCS7A01G149500 chr7A 87.429 175 20 2 2962 3136 102544689 102544517 1.940000e-47 200.0
5 TraesCS7A01G149500 chr7A 95.745 47 2 0 320 366 70192220 70192266 3.420000e-10 76.8
6 TraesCS7A01G149500 chr7B 94.115 2260 92 18 434 2674 55862454 55860217 0.000000e+00 3398.0
7 TraesCS7A01G149500 chr7B 88.732 284 15 10 2880 3148 55860056 55859775 6.600000e-87 331.0
8 TraesCS7A01G149500 chr7B 85.036 274 25 9 2675 2933 55860056 55859784 6.790000e-67 265.0
9 TraesCS7A01G149500 chr7B 92.683 123 8 1 2757 2879 55860338 55860217 3.270000e-40 176.0
10 TraesCS7A01G149500 chr7B 87.903 124 13 2 2962 3085 55860338 55860217 9.230000e-31 145.0
11 TraesCS7A01G149500 chr7D 94.781 1322 62 4 952 2268 100302532 100301213 0.000000e+00 2052.0
12 TraesCS7A01G149500 chr7D 93.798 516 20 4 434 946 100303600 100303094 0.000000e+00 765.0
13 TraesCS7A01G149500 chr3B 96.562 320 10 1 2 321 765300371 765300053 2.180000e-146 529.0
14 TraesCS7A01G149500 chr3B 100.000 46 0 0 322 367 765300097 765300052 5.680000e-13 86.1
15 TraesCS7A01G149500 chr2B 95.652 322 13 1 2 323 572183566 572183886 1.700000e-142 516.0
16 TraesCS7A01G149500 chr2B 95.046 323 16 0 1 323 210815988 210815666 2.840000e-140 508.0
17 TraesCS7A01G149500 chr2B 94.427 323 18 0 1 323 210815624 210815302 6.150000e-137 497.0
18 TraesCS7A01G149500 chr2B 93.538 325 20 1 1 325 114433666 114433989 1.720000e-132 483.0
19 TraesCS7A01G149500 chr2B 100.000 45 0 0 322 366 572183840 572183884 2.040000e-12 84.2
20 TraesCS7A01G149500 chr2B 97.778 45 1 0 325 369 114433944 114433988 9.500000e-11 78.7
21 TraesCS7A01G149500 chr1B 94.671 319 17 0 5 323 582169728 582170046 2.210000e-136 496.0
22 TraesCS7A01G149500 chr1B 93.458 321 20 1 1 321 43795437 43795118 2.880000e-130 475.0
23 TraesCS7A01G149500 chr6B 93.168 322 21 1 1 322 655020816 655020496 3.730000e-129 472.0
24 TraesCS7A01G149500 chr2A 92.683 328 23 1 1 328 138152514 138152188 3.730000e-129 472.0
25 TraesCS7A01G149500 chr3A 90.476 63 4 2 319 381 477000013 476999953 7.340000e-12 82.4
26 TraesCS7A01G149500 chr3A 97.727 44 1 0 324 367 85380265 85380222 3.420000e-10 76.8
27 TraesCS7A01G149500 chr4A 100.000 41 0 0 324 364 705588391 705588351 3.420000e-10 76.8
28 TraesCS7A01G149500 chrUn 95.652 46 0 2 324 368 433954236 433954280 4.420000e-09 73.1
29 TraesCS7A01G149500 chr6A 93.750 48 3 0 319 366 98258282 98258235 4.420000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G149500 chr7A 102544048 102547241 3193 True 1475.8 5899 91.9188 1 3194 5 chr7A.!!$R1 3193
1 TraesCS7A01G149500 chr7B 55859775 55862454 2679 True 863.0 3398 89.6938 434 3148 5 chr7B.!!$R1 2714
2 TraesCS7A01G149500 chr7D 100301213 100303600 2387 True 1408.5 2052 94.2895 434 2268 2 chr7D.!!$R1 1834
3 TraesCS7A01G149500 chr2B 210815302 210815988 686 True 502.5 508 94.7365 1 323 2 chr2B.!!$R1 322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 728 0.035458 CTCCACCGGAGTTCTGCTTT 59.965 55.0 9.46 0.0 44.25 3.51 F
409 729 0.250295 TCCACCGGAGTTCTGCTTTG 60.250 55.0 9.46 0.0 0.00 2.77 F
1066 1956 0.253327 CCTAAAGCCTCACCACCTCC 59.747 60.0 0.00 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 2642 0.389426 CGTAGGTGAACTCGTTGGGG 60.389 60.0 0.00 0.0 0.0 4.96 R
1899 2789 0.462759 CCTCGAACCTCCATTCCAGC 60.463 60.0 0.00 0.0 0.0 4.85 R
2805 3705 0.039256 GCAATTTCTCACAGGCGCAA 60.039 50.0 10.83 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 8.882415 TCCGTGATTATAGTTTCCTAATTGAC 57.118 34.615 0.00 0.00 0.00 3.18
157 158 1.530013 CCTTCACGGTGGAGTACGGT 61.530 60.000 15.11 0.00 42.80 4.83
204 205 5.524284 CACACGGAGAACAGATTAGGATAG 58.476 45.833 0.00 0.00 0.00 2.08
212 213 4.412060 ACAGATTAGGATAGGGCTAGCT 57.588 45.455 15.72 0.00 0.00 3.32
253 254 4.262721 GGGACTAATCATGCGGTGGTAATA 60.263 45.833 0.00 0.00 0.00 0.98
271 272 9.410556 GTGGTAATATATCCGTGTACGTTTTAT 57.589 33.333 0.00 1.15 37.74 1.40
277 278 2.828520 TCCGTGTACGTTTTATGGGGTA 59.171 45.455 0.00 0.00 37.74 3.69
278 279 3.450457 TCCGTGTACGTTTTATGGGGTAT 59.550 43.478 0.00 0.00 37.74 2.73
382 702 9.956720 GTAGTATAGAAACGTATGGTTATGTGT 57.043 33.333 0.00 0.00 38.08 3.72
387 707 7.011828 AGAAACGTATGGTTATGTGTAATGC 57.988 36.000 0.00 0.00 38.08 3.56
388 708 6.596106 AGAAACGTATGGTTATGTGTAATGCA 59.404 34.615 0.00 0.00 38.08 3.96
389 709 6.114221 AACGTATGGTTATGTGTAATGCAC 57.886 37.500 0.00 0.00 41.94 4.57
390 710 5.878116 AACGTATGGTTATGTGTAATGCACT 59.122 36.000 2.75 0.00 42.03 4.40
391 711 6.036735 AACGTATGGTTATGTGTAATGCACTC 59.963 38.462 2.75 0.00 42.03 3.51
392 712 8.798147 AACGTATGGTTATGTGTAATGCACTCC 61.798 40.741 2.75 1.72 42.03 3.85
397 717 2.466867 GTGTAATGCACTCCACCGG 58.533 57.895 0.00 0.00 44.41 5.28
398 718 0.036765 GTGTAATGCACTCCACCGGA 60.037 55.000 9.46 0.00 44.41 5.14
406 726 3.382111 CTCCACCGGAGTTCTGCT 58.618 61.111 9.46 0.00 44.25 4.24
407 727 1.674057 CTCCACCGGAGTTCTGCTT 59.326 57.895 9.46 0.00 44.25 3.91
408 728 0.035458 CTCCACCGGAGTTCTGCTTT 59.965 55.000 9.46 0.00 44.25 3.51
409 729 0.250295 TCCACCGGAGTTCTGCTTTG 60.250 55.000 9.46 0.00 0.00 2.77
410 730 0.535102 CCACCGGAGTTCTGCTTTGT 60.535 55.000 9.46 0.00 0.00 2.83
411 731 1.270625 CCACCGGAGTTCTGCTTTGTA 60.271 52.381 9.46 0.00 0.00 2.41
412 732 2.615493 CCACCGGAGTTCTGCTTTGTAT 60.615 50.000 9.46 0.00 0.00 2.29
413 733 3.369052 CCACCGGAGTTCTGCTTTGTATA 60.369 47.826 9.46 0.00 0.00 1.47
414 734 4.250464 CACCGGAGTTCTGCTTTGTATAA 58.750 43.478 9.46 0.00 0.00 0.98
415 735 4.330074 CACCGGAGTTCTGCTTTGTATAAG 59.670 45.833 9.46 0.00 0.00 1.73
416 736 3.309954 CCGGAGTTCTGCTTTGTATAAGC 59.690 47.826 0.00 2.67 43.29 3.09
429 749 5.539582 TTGTATAAGCACTAACAAAGGCG 57.460 39.130 0.00 0.00 0.00 5.52
430 750 3.936453 TGTATAAGCACTAACAAAGGCGG 59.064 43.478 0.00 0.00 0.00 6.13
431 751 2.843401 TAAGCACTAACAAAGGCGGA 57.157 45.000 0.00 0.00 0.00 5.54
432 752 1.523758 AAGCACTAACAAAGGCGGAG 58.476 50.000 0.00 0.00 0.00 4.63
433 753 0.685097 AGCACTAACAAAGGCGGAGA 59.315 50.000 0.00 0.00 0.00 3.71
434 754 1.079503 GCACTAACAAAGGCGGAGAG 58.920 55.000 0.00 0.00 0.00 3.20
435 755 1.337823 GCACTAACAAAGGCGGAGAGA 60.338 52.381 0.00 0.00 0.00 3.10
436 756 2.611518 CACTAACAAAGGCGGAGAGAG 58.388 52.381 0.00 0.00 0.00 3.20
437 757 2.231478 CACTAACAAAGGCGGAGAGAGA 59.769 50.000 0.00 0.00 0.00 3.10
438 758 2.897969 ACTAACAAAGGCGGAGAGAGAA 59.102 45.455 0.00 0.00 0.00 2.87
840 1163 4.019858 TCCATGGTCTGAGTAAGTCTGAG 58.980 47.826 12.58 0.00 34.05 3.35
841 1164 3.766591 CCATGGTCTGAGTAAGTCTGAGT 59.233 47.826 2.57 0.00 34.05 3.41
1066 1956 0.253327 CCTAAAGCCTCACCACCTCC 59.747 60.000 0.00 0.00 0.00 4.30
1084 1974 2.266055 GCACCACCTCTTCCTCCG 59.734 66.667 0.00 0.00 0.00 4.63
1611 2501 3.064987 CTACCTCCACGCCGTCAGG 62.065 68.421 9.71 9.71 41.62 3.86
1686 2576 2.604046 ACCTCATCATCAAGGCGTAC 57.396 50.000 0.00 0.00 36.01 3.67
1728 2618 3.056328 GCCCTCAAGGTGTTCCGC 61.056 66.667 0.00 0.00 38.26 5.54
1752 2642 4.208686 CCCCTCTACGGCTGCGAC 62.209 72.222 0.00 0.00 0.00 5.19
1755 2645 4.208686 CTCTACGGCTGCGACCCC 62.209 72.222 0.00 0.00 0.00 4.95
1845 2735 3.632604 TGTATCTCAAGACGATGAGGGAC 59.367 47.826 14.40 12.86 45.55 4.46
1881 2771 2.098233 CGGTGGCGTGTACATGTCC 61.098 63.158 16.81 16.88 0.00 4.02
1965 2855 0.465705 TGGATAGCAAGAGGAAGCCG 59.534 55.000 0.00 0.00 0.00 5.52
1968 2858 0.466124 ATAGCAAGAGGAAGCCGGAC 59.534 55.000 5.05 0.00 0.00 4.79
2067 2957 0.247736 TGAAAGAGAGGAAGCGAGGC 59.752 55.000 0.00 0.00 0.00 4.70
2130 3020 2.082231 CACTGGATTTCTCAGCCACAG 58.918 52.381 0.00 0.00 35.78 3.66
2139 3032 1.134580 TCTCAGCCACAGCAGAATAGC 60.135 52.381 0.00 0.00 43.56 2.97
2201 3094 5.762218 GGGGATCTGATGACTGAAATACTTG 59.238 44.000 0.00 0.00 0.00 3.16
2218 3111 8.851541 AAATACTTGGATGAAAATTGCATGTT 57.148 26.923 0.00 0.00 0.00 2.71
2221 3114 7.193377 ACTTGGATGAAAATTGCATGTTTTC 57.807 32.000 21.69 21.69 42.84 2.29
2257 3151 4.394920 GGCAAAATCGGTCATAGAAAGTCA 59.605 41.667 0.00 0.00 0.00 3.41
2323 3217 3.179048 GGTTGACTCAACTTTGCACAAC 58.821 45.455 19.14 0.00 43.14 3.32
2377 3271 1.760192 GGGCAGAGAAGATGCACAAT 58.240 50.000 0.00 0.00 46.57 2.71
2389 3283 6.656270 AGAAGATGCACAATATGTCTTGACAA 59.344 34.615 7.57 0.00 29.89 3.18
2397 3291 7.461918 CACAATATGTCTTGACAAGAGATGTG 58.538 38.462 28.97 25.57 44.12 3.21
2398 3292 6.596888 ACAATATGTCTTGACAAGAGATGTGG 59.403 38.462 28.97 23.95 44.12 4.17
2457 3357 0.823356 GCTGGGGTGCTCTTGTCAAA 60.823 55.000 0.00 0.00 0.00 2.69
2468 3368 4.202233 TGCTCTTGTCAAATGCAATTTCCA 60.202 37.500 9.00 0.00 44.81 3.53
2473 3373 6.479660 TCTTGTCAAATGCAATTTCCAAAGTC 59.520 34.615 0.00 0.00 44.81 3.01
2479 3379 7.662258 TCAAATGCAATTTCCAAAGTCAATCAT 59.338 29.630 0.00 0.00 44.81 2.45
2485 3385 2.170166 TCCAAAGTCAATCATGGTGGC 58.830 47.619 0.00 0.00 34.50 5.01
2486 3386 1.894466 CCAAAGTCAATCATGGTGGCA 59.106 47.619 4.98 0.00 0.00 4.92
2543 3443 6.097156 TGAACACAACAAACTGTAGTAACG 57.903 37.500 0.00 0.00 0.00 3.18
2544 3444 5.638657 TGAACACAACAAACTGTAGTAACGT 59.361 36.000 0.00 0.00 0.00 3.99
2580 3480 3.478857 TCCTTTTGCTCGTAAAGTCCA 57.521 42.857 0.00 0.00 32.06 4.02
2581 3481 3.399330 TCCTTTTGCTCGTAAAGTCCAG 58.601 45.455 0.00 0.00 32.06 3.86
2604 3504 7.096023 CCAGTTATAGAATAACTAGTGCTTGCG 60.096 40.741 11.02 0.00 36.14 4.85
2649 3549 7.617041 ATTTTCTCTACTTGGTGTTGATAGC 57.383 36.000 0.00 0.00 30.69 2.97
2650 3550 5.738619 TTCTCTACTTGGTGTTGATAGCA 57.261 39.130 0.00 0.00 30.69 3.49
2651 3551 5.073311 TCTCTACTTGGTGTTGATAGCAC 57.927 43.478 0.00 0.00 36.22 4.40
2652 3552 4.526650 TCTCTACTTGGTGTTGATAGCACA 59.473 41.667 0.00 0.00 38.51 4.57
2653 3553 5.011635 TCTCTACTTGGTGTTGATAGCACAA 59.988 40.000 0.00 0.00 38.51 3.33
2654 3554 4.994852 TCTACTTGGTGTTGATAGCACAAC 59.005 41.667 12.28 12.28 46.83 3.32
2655 3555 2.884639 ACTTGGTGTTGATAGCACAACC 59.115 45.455 15.13 4.62 46.32 3.77
2656 3556 2.647683 TGGTGTTGATAGCACAACCA 57.352 45.000 9.36 9.36 46.32 3.67
2657 3557 2.503331 TGGTGTTGATAGCACAACCAG 58.497 47.619 9.36 0.00 46.32 4.00
2658 3558 2.158682 TGGTGTTGATAGCACAACCAGT 60.159 45.455 9.36 0.00 46.32 4.00
2659 3559 3.071747 TGGTGTTGATAGCACAACCAGTA 59.928 43.478 9.36 0.00 46.32 2.74
2660 3560 4.261801 GGTGTTGATAGCACAACCAGTAT 58.738 43.478 15.13 0.00 46.32 2.12
2661 3561 4.700213 GGTGTTGATAGCACAACCAGTATT 59.300 41.667 15.13 0.00 46.32 1.89
2662 3562 5.391950 GGTGTTGATAGCACAACCAGTATTG 60.392 44.000 15.13 0.00 46.32 1.90
2663 3563 5.411361 GTGTTGATAGCACAACCAGTATTGA 59.589 40.000 15.13 0.00 46.32 2.57
2664 3564 6.094048 GTGTTGATAGCACAACCAGTATTGAT 59.906 38.462 15.13 0.00 46.32 2.57
2665 3565 6.658816 TGTTGATAGCACAACCAGTATTGATT 59.341 34.615 15.13 0.00 46.32 2.57
2666 3566 6.682423 TGATAGCACAACCAGTATTGATTG 57.318 37.500 0.00 0.00 33.57 2.67
2667 3567 6.179756 TGATAGCACAACCAGTATTGATTGT 58.820 36.000 0.00 0.00 35.69 2.71
2668 3568 7.334858 TGATAGCACAACCAGTATTGATTGTA 58.665 34.615 0.00 0.00 33.59 2.41
2669 3569 7.992608 TGATAGCACAACCAGTATTGATTGTAT 59.007 33.333 0.00 0.00 33.59 2.29
2670 3570 8.752005 ATAGCACAACCAGTATTGATTGTATT 57.248 30.769 0.00 0.00 33.59 1.89
2671 3571 6.855836 AGCACAACCAGTATTGATTGTATTG 58.144 36.000 0.00 0.00 33.59 1.90
2672 3572 6.434028 AGCACAACCAGTATTGATTGTATTGT 59.566 34.615 0.00 0.00 33.59 2.71
2673 3573 7.609918 AGCACAACCAGTATTGATTGTATTGTA 59.390 33.333 0.00 0.00 33.59 2.41
2674 3574 7.910162 GCACAACCAGTATTGATTGTATTGTAG 59.090 37.037 0.00 0.00 33.59 2.74
2675 3575 9.161629 CACAACCAGTATTGATTGTATTGTAGA 57.838 33.333 0.00 0.00 33.59 2.59
2676 3576 9.733556 ACAACCAGTATTGATTGTATTGTAGAA 57.266 29.630 0.00 0.00 33.59 2.10
2677 3577 9.988350 CAACCAGTATTGATTGTATTGTAGAAC 57.012 33.333 0.00 0.00 0.00 3.01
2678 3578 8.732746 ACCAGTATTGATTGTATTGTAGAACC 57.267 34.615 0.00 0.00 0.00 3.62
2679 3579 8.548877 ACCAGTATTGATTGTATTGTAGAACCT 58.451 33.333 0.00 0.00 0.00 3.50
2680 3580 9.046296 CCAGTATTGATTGTATTGTAGAACCTC 57.954 37.037 0.00 0.00 0.00 3.85
2681 3581 8.755941 CAGTATTGATTGTATTGTAGAACCTCG 58.244 37.037 0.00 0.00 0.00 4.63
2682 3582 8.475639 AGTATTGATTGTATTGTAGAACCTCGT 58.524 33.333 0.00 0.00 0.00 4.18
2683 3583 9.095065 GTATTGATTGTATTGTAGAACCTCGTT 57.905 33.333 0.00 0.00 0.00 3.85
2684 3584 7.591006 TTGATTGTATTGTAGAACCTCGTTC 57.409 36.000 0.00 0.00 42.25 3.95
2685 3585 6.693466 TGATTGTATTGTAGAACCTCGTTCA 58.307 36.000 7.24 0.00 44.11 3.18
2686 3586 7.327975 TGATTGTATTGTAGAACCTCGTTCAT 58.672 34.615 7.24 0.00 44.11 2.57
2687 3587 6.961359 TTGTATTGTAGAACCTCGTTCATG 57.039 37.500 7.24 0.00 44.11 3.07
2688 3588 5.416083 TGTATTGTAGAACCTCGTTCATGG 58.584 41.667 7.24 0.00 44.11 3.66
2689 3589 4.553330 ATTGTAGAACCTCGTTCATGGT 57.447 40.909 7.24 0.00 44.11 3.55
2691 3591 3.659786 TGTAGAACCTCGTTCATGGTTG 58.340 45.455 7.24 0.00 45.48 3.77
2692 3592 2.930826 AGAACCTCGTTCATGGTTGT 57.069 45.000 7.24 0.00 45.48 3.32
2693 3593 2.494059 AGAACCTCGTTCATGGTTGTG 58.506 47.619 7.24 0.00 45.48 3.33
2694 3594 0.951558 AACCTCGTTCATGGTTGTGC 59.048 50.000 0.00 0.00 44.02 4.57
2695 3595 0.179032 ACCTCGTTCATGGTTGTGCA 60.179 50.000 0.00 0.00 31.62 4.57
2696 3596 0.518636 CCTCGTTCATGGTTGTGCAG 59.481 55.000 0.00 0.00 0.00 4.41
2697 3597 1.229428 CTCGTTCATGGTTGTGCAGT 58.771 50.000 0.00 0.00 0.00 4.40
2698 3598 1.603802 CTCGTTCATGGTTGTGCAGTT 59.396 47.619 0.00 0.00 0.00 3.16
2699 3599 2.805671 CTCGTTCATGGTTGTGCAGTTA 59.194 45.455 0.00 0.00 0.00 2.24
2700 3600 3.206964 TCGTTCATGGTTGTGCAGTTAA 58.793 40.909 0.00 0.00 0.00 2.01
2701 3601 3.249799 TCGTTCATGGTTGTGCAGTTAAG 59.750 43.478 0.00 0.00 0.00 1.85
2702 3602 3.249799 CGTTCATGGTTGTGCAGTTAAGA 59.750 43.478 0.00 0.00 0.00 2.10
2703 3603 4.083324 CGTTCATGGTTGTGCAGTTAAGAT 60.083 41.667 0.00 0.00 0.00 2.40
2704 3604 5.156355 GTTCATGGTTGTGCAGTTAAGATG 58.844 41.667 0.00 0.00 0.00 2.90
2705 3605 4.397420 TCATGGTTGTGCAGTTAAGATGT 58.603 39.130 0.00 0.00 0.00 3.06
2706 3606 4.826733 TCATGGTTGTGCAGTTAAGATGTT 59.173 37.500 0.00 0.00 0.00 2.71
2707 3607 5.301551 TCATGGTTGTGCAGTTAAGATGTTT 59.698 36.000 0.00 0.00 0.00 2.83
2708 3608 6.488344 TCATGGTTGTGCAGTTAAGATGTTTA 59.512 34.615 0.00 0.00 0.00 2.01
2709 3609 6.892658 TGGTTGTGCAGTTAAGATGTTTAT 57.107 33.333 0.00 0.00 0.00 1.40
2710 3610 6.908825 TGGTTGTGCAGTTAAGATGTTTATC 58.091 36.000 0.00 0.00 0.00 1.75
2711 3611 6.714810 TGGTTGTGCAGTTAAGATGTTTATCT 59.285 34.615 0.00 0.00 45.51 1.98
2712 3612 7.023575 GGTTGTGCAGTTAAGATGTTTATCTG 58.976 38.462 0.00 0.00 42.80 2.90
2713 3613 7.308589 GGTTGTGCAGTTAAGATGTTTATCTGT 60.309 37.037 0.00 0.00 42.80 3.41
2714 3614 7.132694 TGTGCAGTTAAGATGTTTATCTGTG 57.867 36.000 0.00 0.00 42.80 3.66
2715 3615 6.934083 TGTGCAGTTAAGATGTTTATCTGTGA 59.066 34.615 0.00 0.00 42.80 3.58
2716 3616 7.118245 TGTGCAGTTAAGATGTTTATCTGTGAG 59.882 37.037 0.00 0.00 42.80 3.51
2717 3617 7.331934 GTGCAGTTAAGATGTTTATCTGTGAGA 59.668 37.037 0.00 0.00 42.80 3.27
2718 3618 7.877612 TGCAGTTAAGATGTTTATCTGTGAGAA 59.122 33.333 0.00 0.00 42.80 2.87
2719 3619 8.887717 GCAGTTAAGATGTTTATCTGTGAGAAT 58.112 33.333 0.00 0.00 42.80 2.40
2725 3625 9.950496 AAGATGTTTATCTGTGAGAATAGTGTT 57.050 29.630 0.00 0.00 42.80 3.32
2726 3626 9.950496 AGATGTTTATCTGTGAGAATAGTGTTT 57.050 29.630 0.00 0.00 42.04 2.83
2752 3652 6.808008 TTTTCTGAAATGATCTGGTCAGAC 57.192 37.500 17.13 0.00 44.62 3.51
2753 3653 5.488262 TTCTGAAATGATCTGGTCAGACA 57.512 39.130 17.13 4.62 44.62 3.41
2754 3654 4.825422 TCTGAAATGATCTGGTCAGACAC 58.175 43.478 14.80 2.10 41.13 3.67
2755 3655 3.588955 TGAAATGATCTGGTCAGACACG 58.411 45.455 2.17 0.00 40.92 4.49
2756 3656 3.006859 TGAAATGATCTGGTCAGACACGT 59.993 43.478 2.17 0.29 40.92 4.49
2757 3657 3.685139 AATGATCTGGTCAGACACGTT 57.315 42.857 2.17 5.90 40.92 3.99
2758 3658 3.685139 ATGATCTGGTCAGACACGTTT 57.315 42.857 2.17 0.00 40.92 3.60
2759 3659 3.469008 TGATCTGGTCAGACACGTTTT 57.531 42.857 2.17 0.00 40.75 2.43
2760 3660 4.594123 TGATCTGGTCAGACACGTTTTA 57.406 40.909 2.17 0.00 40.75 1.52
2761 3661 4.951254 TGATCTGGTCAGACACGTTTTAA 58.049 39.130 2.17 0.00 40.75 1.52
2762 3662 5.361427 TGATCTGGTCAGACACGTTTTAAA 58.639 37.500 2.17 0.00 40.75 1.52
2763 3663 5.995282 TGATCTGGTCAGACACGTTTTAAAT 59.005 36.000 2.17 0.00 40.75 1.40
2764 3664 6.485313 TGATCTGGTCAGACACGTTTTAAATT 59.515 34.615 2.17 0.00 40.75 1.82
2765 3665 6.295039 TCTGGTCAGACACGTTTTAAATTC 57.705 37.500 2.17 0.00 31.41 2.17
2766 3666 5.237779 TCTGGTCAGACACGTTTTAAATTCC 59.762 40.000 2.17 0.00 31.41 3.01
2767 3667 5.127491 TGGTCAGACACGTTTTAAATTCCT 58.873 37.500 2.17 0.00 0.00 3.36
2768 3668 5.591067 TGGTCAGACACGTTTTAAATTCCTT 59.409 36.000 2.17 0.00 0.00 3.36
2769 3669 6.095720 TGGTCAGACACGTTTTAAATTCCTTT 59.904 34.615 2.17 0.00 0.00 3.11
2770 3670 6.976349 GGTCAGACACGTTTTAAATTCCTTTT 59.024 34.615 2.17 0.00 0.00 2.27
2771 3671 7.043656 GGTCAGACACGTTTTAAATTCCTTTTG 60.044 37.037 2.17 0.00 0.00 2.44
2772 3672 6.474102 TCAGACACGTTTTAAATTCCTTTTGC 59.526 34.615 0.00 0.00 0.00 3.68
2773 3673 6.475402 CAGACACGTTTTAAATTCCTTTTGCT 59.525 34.615 0.00 0.00 0.00 3.91
2774 3674 7.010091 CAGACACGTTTTAAATTCCTTTTGCTT 59.990 33.333 0.00 0.00 0.00 3.91
2775 3675 6.999456 ACACGTTTTAAATTCCTTTTGCTTG 58.001 32.000 0.00 0.00 0.00 4.01
2776 3676 6.592220 ACACGTTTTAAATTCCTTTTGCTTGT 59.408 30.769 0.00 0.00 0.00 3.16
2777 3677 7.760340 ACACGTTTTAAATTCCTTTTGCTTGTA 59.240 29.630 0.00 0.00 0.00 2.41
2778 3678 8.596380 CACGTTTTAAATTCCTTTTGCTTGTAA 58.404 29.630 0.00 0.00 0.00 2.41
2779 3679 9.152595 ACGTTTTAAATTCCTTTTGCTTGTAAA 57.847 25.926 0.00 0.00 0.00 2.01
2780 3680 9.416058 CGTTTTAAATTCCTTTTGCTTGTAAAC 57.584 29.630 0.00 0.00 0.00 2.01
2784 3684 9.877178 TTAAATTCCTTTTGCTTGTAAACTTCA 57.123 25.926 0.00 0.00 0.00 3.02
2785 3685 8.424274 AAATTCCTTTTGCTTGTAAACTTCAG 57.576 30.769 0.00 0.00 0.00 3.02
2786 3686 6.524101 TTCCTTTTGCTTGTAAACTTCAGT 57.476 33.333 0.00 0.00 0.00 3.41
2787 3687 6.524101 TCCTTTTGCTTGTAAACTTCAGTT 57.476 33.333 0.00 0.00 40.50 3.16
2789 3689 6.811170 TCCTTTTGCTTGTAAACTTCAGTTTG 59.189 34.615 14.09 0.15 46.56 2.93
2790 3690 6.589907 CCTTTTGCTTGTAAACTTCAGTTTGT 59.410 34.615 14.09 0.00 46.56 2.83
2791 3691 7.757624 CCTTTTGCTTGTAAACTTCAGTTTGTA 59.242 33.333 14.09 1.70 46.56 2.41
2792 3692 8.682128 TTTTGCTTGTAAACTTCAGTTTGTAG 57.318 30.769 14.09 9.48 46.56 2.74
2793 3693 7.618502 TTGCTTGTAAACTTCAGTTTGTAGA 57.381 32.000 14.09 0.00 46.56 2.59
2794 3694 7.618502 TGCTTGTAAACTTCAGTTTGTAGAA 57.381 32.000 14.09 1.07 46.56 2.10
2795 3695 8.220755 TGCTTGTAAACTTCAGTTTGTAGAAT 57.779 30.769 14.09 0.00 46.56 2.40
2796 3696 9.332502 TGCTTGTAAACTTCAGTTTGTAGAATA 57.667 29.630 14.09 0.00 46.56 1.75
2804 3704 8.535690 ACTTCAGTTTGTAGAATAACTAGTGC 57.464 34.615 0.00 0.00 33.49 4.40
2805 3705 8.368668 ACTTCAGTTTGTAGAATAACTAGTGCT 58.631 33.333 0.00 0.00 33.49 4.40
2806 3706 9.209175 CTTCAGTTTGTAGAATAACTAGTGCTT 57.791 33.333 0.00 0.00 33.49 3.91
2807 3707 8.534333 TCAGTTTGTAGAATAACTAGTGCTTG 57.466 34.615 0.00 0.00 33.49 4.01
2808 3708 7.117812 TCAGTTTGTAGAATAACTAGTGCTTGC 59.882 37.037 0.00 0.00 33.49 4.01
2809 3709 6.090898 AGTTTGTAGAATAACTAGTGCTTGCG 59.909 38.462 0.00 0.00 33.06 4.85
2810 3710 3.863424 TGTAGAATAACTAGTGCTTGCGC 59.137 43.478 0.00 0.00 0.00 6.09
2811 3711 2.280628 AGAATAACTAGTGCTTGCGCC 58.719 47.619 4.18 0.00 34.43 6.53
2812 3712 2.093447 AGAATAACTAGTGCTTGCGCCT 60.093 45.455 4.18 0.00 34.43 5.52
2813 3713 1.656652 ATAACTAGTGCTTGCGCCTG 58.343 50.000 4.18 0.00 34.43 4.85
2814 3714 0.320374 TAACTAGTGCTTGCGCCTGT 59.680 50.000 4.18 0.00 34.43 4.00
2815 3715 1.230635 AACTAGTGCTTGCGCCTGTG 61.231 55.000 4.18 0.00 34.43 3.66
2816 3716 1.374631 CTAGTGCTTGCGCCTGTGA 60.375 57.895 4.18 0.00 34.43 3.58
2817 3717 1.357258 CTAGTGCTTGCGCCTGTGAG 61.357 60.000 4.18 0.00 34.43 3.51
2818 3718 1.815817 TAGTGCTTGCGCCTGTGAGA 61.816 55.000 4.18 0.00 34.43 3.27
2819 3719 2.110835 TGCTTGCGCCTGTGAGAA 59.889 55.556 4.18 0.00 34.43 2.87
2820 3720 1.525765 TGCTTGCGCCTGTGAGAAA 60.526 52.632 4.18 0.00 34.43 2.52
2821 3721 0.890542 TGCTTGCGCCTGTGAGAAAT 60.891 50.000 4.18 0.00 34.43 2.17
2822 3722 0.242017 GCTTGCGCCTGTGAGAAATT 59.758 50.000 4.18 0.00 0.00 1.82
2823 3723 1.973138 CTTGCGCCTGTGAGAAATTG 58.027 50.000 4.18 0.00 0.00 2.32
2824 3724 0.039256 TTGCGCCTGTGAGAAATTGC 60.039 50.000 4.18 0.00 0.00 3.56
2825 3725 0.890542 TGCGCCTGTGAGAAATTGCT 60.891 50.000 4.18 0.00 0.00 3.91
2826 3726 0.179179 GCGCCTGTGAGAAATTGCTC 60.179 55.000 6.48 6.48 35.46 4.26
2827 3727 1.446907 CGCCTGTGAGAAATTGCTCT 58.553 50.000 14.73 0.00 35.91 4.09
2828 3728 1.396301 CGCCTGTGAGAAATTGCTCTC 59.604 52.381 14.73 11.42 41.98 3.20
2829 3729 2.709213 GCCTGTGAGAAATTGCTCTCT 58.291 47.619 14.73 0.00 42.11 3.10
2830 3730 3.677148 CGCCTGTGAGAAATTGCTCTCTA 60.677 47.826 14.73 0.54 42.11 2.43
2831 3731 4.450053 GCCTGTGAGAAATTGCTCTCTAT 58.550 43.478 14.73 0.00 42.11 1.98
2832 3732 4.880696 GCCTGTGAGAAATTGCTCTCTATT 59.119 41.667 14.73 0.00 42.11 1.73
2833 3733 5.356470 GCCTGTGAGAAATTGCTCTCTATTT 59.644 40.000 14.73 0.00 42.11 1.40
2834 3734 6.127786 GCCTGTGAGAAATTGCTCTCTATTTT 60.128 38.462 14.73 0.00 42.11 1.82
2835 3735 7.470900 CCTGTGAGAAATTGCTCTCTATTTTC 58.529 38.462 14.73 0.00 42.11 2.29
2836 3736 7.336427 CCTGTGAGAAATTGCTCTCTATTTTCT 59.664 37.037 14.73 0.00 42.11 2.52
2837 3737 8.261492 TGTGAGAAATTGCTCTCTATTTTCTC 57.739 34.615 14.73 13.90 42.11 2.87
2838 3738 8.099537 TGTGAGAAATTGCTCTCTATTTTCTCT 58.900 33.333 14.73 0.00 42.11 3.10
2839 3739 9.593134 GTGAGAAATTGCTCTCTATTTTCTCTA 57.407 33.333 14.73 7.86 42.11 2.43
2840 3740 9.593134 TGAGAAATTGCTCTCTATTTTCTCTAC 57.407 33.333 14.73 1.52 42.11 2.59
2841 3741 9.816354 GAGAAATTGCTCTCTATTTTCTCTACT 57.184 33.333 6.15 0.00 39.08 2.57
2844 3744 8.729805 AATTGCTCTCTATTTTCTCTACTTGG 57.270 34.615 0.00 0.00 0.00 3.61
2845 3745 6.859112 TGCTCTCTATTTTCTCTACTTGGT 57.141 37.500 0.00 0.00 0.00 3.67
2846 3746 6.634805 TGCTCTCTATTTTCTCTACTTGGTG 58.365 40.000 0.00 0.00 0.00 4.17
2847 3747 6.211584 TGCTCTCTATTTTCTCTACTTGGTGT 59.788 38.462 0.00 0.00 0.00 4.16
2848 3748 7.100409 GCTCTCTATTTTCTCTACTTGGTGTT 58.900 38.462 0.00 0.00 0.00 3.32
2849 3749 7.064016 GCTCTCTATTTTCTCTACTTGGTGTTG 59.936 40.741 0.00 0.00 0.00 3.33
2913 3973 4.720046 TGGTGGTGCAGTTAAGATGTTTA 58.280 39.130 0.00 0.00 0.00 2.01
2921 3981 7.413438 GGTGCAGTTAAGATGTTTATCTGTGAG 60.413 40.741 0.00 0.00 42.80 3.51
2964 4038 3.469008 TGATCTGGTCAGACACGTTTT 57.531 42.857 2.17 0.00 40.75 2.43
3013 4087 6.874134 CAGGTTGTAGAATAACTAGTGCTTGT 59.126 38.462 0.00 0.00 0.00 3.16
3019 4093 1.808411 TAACTAGTGCTTGTGCCTGC 58.192 50.000 0.00 0.00 38.71 4.85
3020 4094 1.230635 AACTAGTGCTTGTGCCTGCG 61.231 55.000 0.00 0.00 38.71 5.18
3033 4107 1.066215 TGCCTGCGAGAAATTGCTCTA 60.066 47.619 11.79 0.00 32.71 2.43
3064 4139 5.804639 TCTACTTGGTGTTGATAGCACAAT 58.195 37.500 0.00 0.00 38.51 2.71
3072 4147 5.817296 GGTGTTGATAGCACAATCTGTATCA 59.183 40.000 0.00 0.00 38.51 2.15
3075 4150 8.400947 GTGTTGATAGCACAATCTGTATCAATT 58.599 33.333 6.85 0.00 36.12 2.32
3076 4151 8.959548 TGTTGATAGCACAATCTGTATCAATTT 58.040 29.630 6.85 0.00 36.12 1.82
3080 4155 6.579666 AGCACAATCTGTATCAATTTGTGT 57.420 33.333 13.62 1.43 45.50 3.72
3099 4174 3.307242 GTGTTGTAGAACCTCGATCATGC 59.693 47.826 0.00 0.00 0.00 4.06
3148 4223 6.484643 GTGAGAATAGTGTATGATGTGCCATT 59.515 38.462 0.00 0.00 0.00 3.16
3149 4224 7.012704 GTGAGAATAGTGTATGATGTGCCATTT 59.987 37.037 0.00 0.00 0.00 2.32
3150 4225 7.557358 TGAGAATAGTGTATGATGTGCCATTTT 59.443 33.333 0.00 0.00 0.00 1.82
3151 4226 8.297470 AGAATAGTGTATGATGTGCCATTTTT 57.703 30.769 0.00 0.00 0.00 1.94
3184 4259 8.964533 AATAATATGGTCAGACATAGTCCTCT 57.035 34.615 2.17 0.00 36.82 3.69
3185 4260 6.909550 AATATGGTCAGACATAGTCCTCTC 57.090 41.667 2.17 0.00 36.82 3.20
3186 4261 3.739401 TGGTCAGACATAGTCCTCTCA 57.261 47.619 2.17 0.00 32.18 3.27
3187 4262 4.256983 TGGTCAGACATAGTCCTCTCAT 57.743 45.455 2.17 0.00 32.18 2.90
3188 4263 5.388599 TGGTCAGACATAGTCCTCTCATA 57.611 43.478 2.17 0.00 32.18 2.15
3189 4264 5.133941 TGGTCAGACATAGTCCTCTCATAC 58.866 45.833 2.17 0.00 32.18 2.39
3190 4265 4.521256 GGTCAGACATAGTCCTCTCATACC 59.479 50.000 2.17 0.00 32.18 2.73
3191 4266 5.133941 GTCAGACATAGTCCTCTCATACCA 58.866 45.833 0.00 0.00 32.18 3.25
3192 4267 5.009210 GTCAGACATAGTCCTCTCATACCAC 59.991 48.000 0.00 0.00 32.18 4.16
3193 4268 4.889995 CAGACATAGTCCTCTCATACCACA 59.110 45.833 0.00 0.00 32.18 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 6.413783 TCACGGGCACATCTAATTATTAGA 57.586 37.500 15.89 15.89 45.58 2.10
115 116 2.332063 ATATGAAAGTCCACGCCTGG 57.668 50.000 0.00 0.00 39.23 4.45
157 158 6.611381 GCACTTAGCAATTTACATTGACTGA 58.389 36.000 5.78 0.00 42.35 3.41
183 184 4.021894 CCCTATCCTAATCTGTTCTCCGTG 60.022 50.000 0.00 0.00 0.00 4.94
186 187 4.164204 AGCCCTATCCTAATCTGTTCTCC 58.836 47.826 0.00 0.00 0.00 3.71
204 205 3.828875 ACTCAATCTAACAGCTAGCCC 57.171 47.619 12.13 0.00 0.00 5.19
212 213 6.681729 AGTCCCACTAAACTCAATCTAACA 57.318 37.500 0.00 0.00 0.00 2.41
253 254 4.101430 ACCCCATAAAACGTACACGGATAT 59.899 41.667 6.72 0.00 44.95 1.63
271 272 7.318401 ACATTATCTTCCCTAAGTATACCCCA 58.682 38.462 0.00 0.00 34.13 4.96
380 700 0.249120 CTCCGGTGGAGTGCATTACA 59.751 55.000 0.00 0.00 44.25 2.41
381 701 3.065575 CTCCGGTGGAGTGCATTAC 57.934 57.895 0.00 0.00 44.25 1.89
390 710 0.250295 CAAAGCAGAACTCCGGTGGA 60.250 55.000 8.63 0.00 0.00 4.02
391 711 0.535102 ACAAAGCAGAACTCCGGTGG 60.535 55.000 8.63 2.00 0.00 4.61
392 712 2.163818 TACAAAGCAGAACTCCGGTG 57.836 50.000 0.00 0.00 0.00 4.94
393 713 4.504858 CTTATACAAAGCAGAACTCCGGT 58.495 43.478 0.00 0.00 0.00 5.28
394 714 3.309954 GCTTATACAAAGCAGAACTCCGG 59.690 47.826 0.00 0.00 42.56 5.14
395 715 4.522297 GCTTATACAAAGCAGAACTCCG 57.478 45.455 4.91 0.00 42.56 4.63
406 726 5.106475 CCGCCTTTGTTAGTGCTTATACAAA 60.106 40.000 0.00 0.00 37.95 2.83
407 727 4.393680 CCGCCTTTGTTAGTGCTTATACAA 59.606 41.667 0.00 0.00 0.00 2.41
408 728 3.936453 CCGCCTTTGTTAGTGCTTATACA 59.064 43.478 0.00 0.00 0.00 2.29
409 729 4.186159 TCCGCCTTTGTTAGTGCTTATAC 58.814 43.478 0.00 0.00 0.00 1.47
410 730 4.160814 TCTCCGCCTTTGTTAGTGCTTATA 59.839 41.667 0.00 0.00 0.00 0.98
411 731 3.055385 TCTCCGCCTTTGTTAGTGCTTAT 60.055 43.478 0.00 0.00 0.00 1.73
412 732 2.300723 TCTCCGCCTTTGTTAGTGCTTA 59.699 45.455 0.00 0.00 0.00 3.09
413 733 1.071699 TCTCCGCCTTTGTTAGTGCTT 59.928 47.619 0.00 0.00 0.00 3.91
414 734 0.685097 TCTCCGCCTTTGTTAGTGCT 59.315 50.000 0.00 0.00 0.00 4.40
415 735 1.079503 CTCTCCGCCTTTGTTAGTGC 58.920 55.000 0.00 0.00 0.00 4.40
416 736 2.231478 TCTCTCTCCGCCTTTGTTAGTG 59.769 50.000 0.00 0.00 0.00 2.74
417 737 2.526432 TCTCTCTCCGCCTTTGTTAGT 58.474 47.619 0.00 0.00 0.00 2.24
418 738 3.193691 TCTTCTCTCTCCGCCTTTGTTAG 59.806 47.826 0.00 0.00 0.00 2.34
419 739 3.056749 GTCTTCTCTCTCCGCCTTTGTTA 60.057 47.826 0.00 0.00 0.00 2.41
420 740 1.971357 TCTTCTCTCTCCGCCTTTGTT 59.029 47.619 0.00 0.00 0.00 2.83
421 741 1.273886 GTCTTCTCTCTCCGCCTTTGT 59.726 52.381 0.00 0.00 0.00 2.83
422 742 1.273606 TGTCTTCTCTCTCCGCCTTTG 59.726 52.381 0.00 0.00 0.00 2.77
423 743 1.633774 TGTCTTCTCTCTCCGCCTTT 58.366 50.000 0.00 0.00 0.00 3.11
424 744 1.859302 ATGTCTTCTCTCTCCGCCTT 58.141 50.000 0.00 0.00 0.00 4.35
425 745 1.754226 GAATGTCTTCTCTCTCCGCCT 59.246 52.381 0.00 0.00 0.00 5.52
426 746 1.202475 GGAATGTCTTCTCTCTCCGCC 60.202 57.143 0.00 0.00 0.00 6.13
427 747 1.478510 TGGAATGTCTTCTCTCTCCGC 59.521 52.381 0.00 0.00 0.00 5.54
428 748 2.757868 AGTGGAATGTCTTCTCTCTCCG 59.242 50.000 0.00 0.00 0.00 4.63
429 749 3.678529 GCAGTGGAATGTCTTCTCTCTCC 60.679 52.174 0.00 0.00 0.00 3.71
430 750 3.056250 TGCAGTGGAATGTCTTCTCTCTC 60.056 47.826 0.00 0.00 0.00 3.20
431 751 2.902486 TGCAGTGGAATGTCTTCTCTCT 59.098 45.455 0.00 0.00 0.00 3.10
432 752 3.325293 TGCAGTGGAATGTCTTCTCTC 57.675 47.619 0.00 0.00 0.00 3.20
433 753 3.678252 CGATGCAGTGGAATGTCTTCTCT 60.678 47.826 0.00 0.00 0.00 3.10
434 754 2.606725 CGATGCAGTGGAATGTCTTCTC 59.393 50.000 0.00 0.00 0.00 2.87
435 755 2.234661 TCGATGCAGTGGAATGTCTTCT 59.765 45.455 0.00 0.00 0.00 2.85
436 756 2.349886 GTCGATGCAGTGGAATGTCTTC 59.650 50.000 0.00 0.00 0.00 2.87
437 757 2.289631 TGTCGATGCAGTGGAATGTCTT 60.290 45.455 0.00 0.00 0.00 3.01
438 758 1.276138 TGTCGATGCAGTGGAATGTCT 59.724 47.619 0.00 0.00 0.00 3.41
475 795 3.049080 GCCCCACTCCATCAGGGAC 62.049 68.421 0.00 0.00 45.80 4.46
477 797 4.181010 CGCCCCACTCCATCAGGG 62.181 72.222 0.00 0.00 42.94 4.45
478 798 3.083349 TCGCCCCACTCCATCAGG 61.083 66.667 0.00 0.00 0.00 3.86
744 1064 3.855853 GGGCGAGGGAGAAGAGGC 61.856 72.222 0.00 0.00 0.00 4.70
787 1107 1.008767 CGTATCGTCGGCCTTCTCC 60.009 63.158 0.00 0.00 0.00 3.71
840 1163 3.074412 CCAGTGACCCATTTGACAGTAC 58.926 50.000 0.00 0.00 0.00 2.73
841 1164 2.039746 CCCAGTGACCCATTTGACAGTA 59.960 50.000 0.00 0.00 0.00 2.74
917 1251 4.072088 GTGGAAAGGTCACGCGCG 62.072 66.667 30.96 30.96 0.00 6.86
1066 1956 2.266055 GGAGGAAGAGGTGGTGCG 59.734 66.667 0.00 0.00 0.00 5.34
1074 1964 0.179124 CGAAGAAGGCGGAGGAAGAG 60.179 60.000 0.00 0.00 0.00 2.85
1298 2188 4.647615 CGATGTAGGAGGCCGGCG 62.648 72.222 22.54 0.00 0.00 6.46
1299 2189 4.971125 GCGATGTAGGAGGCCGGC 62.971 72.222 21.18 21.18 0.00 6.13
1302 2192 4.971125 GCGGCGATGTAGGAGGCC 62.971 72.222 12.98 0.00 42.14 5.19
1356 2246 1.596934 GTGGATGAGGTTCTCCGCA 59.403 57.895 0.00 0.00 46.64 5.69
1467 2357 3.363970 GCATCTTGTTGAACACGTCGAAT 60.364 43.478 0.00 0.00 0.00 3.34
1474 2364 1.330080 GCGCGCATCTTGTTGAACAC 61.330 55.000 29.10 0.00 0.00 3.32
1581 2471 3.412879 GAGGTAGACCAGCGACGCC 62.413 68.421 17.79 0.15 38.89 5.68
1611 2501 2.444895 ATCTGGCGGGAGAGGGAC 60.445 66.667 0.00 0.00 0.00 4.46
1728 2618 4.438346 CCGTAGAGGGGCATTTCG 57.562 61.111 0.00 0.00 35.97 3.46
1752 2642 0.389426 CGTAGGTGAACTCGTTGGGG 60.389 60.000 0.00 0.00 0.00 4.96
1822 2712 3.885901 TCCCTCATCGTCTTGAGATACAG 59.114 47.826 12.28 0.00 44.88 2.74
1860 2750 2.434185 ATGTACACGCCACCGCTG 60.434 61.111 0.00 0.00 38.22 5.18
1866 2756 2.433491 GCGGACATGTACACGCCA 60.433 61.111 23.54 0.00 45.70 5.69
1896 2786 2.044946 AACCTCCATTCCAGCGCC 60.045 61.111 2.29 0.00 0.00 6.53
1899 2789 0.462759 CCTCGAACCTCCATTCCAGC 60.463 60.000 0.00 0.00 0.00 4.85
1965 2855 3.448686 CGTCCTGTAAGTGATCATGTCC 58.551 50.000 0.00 0.00 0.00 4.02
1968 2858 2.862536 CAGCGTCCTGTAAGTGATCATG 59.137 50.000 0.00 0.00 34.31 3.07
2067 2957 1.811266 CATCCTCTGGTCCAACGCG 60.811 63.158 3.53 3.53 0.00 6.01
2070 2960 2.159226 CGAGTACATCCTCTGGTCCAAC 60.159 54.545 0.00 0.00 0.00 3.77
2130 3020 0.940833 GGCGAGGAAAGCTATTCTGC 59.059 55.000 0.00 0.44 34.52 4.26
2139 3032 1.738099 CCTGTCACGGCGAGGAAAG 60.738 63.158 16.62 14.82 0.00 2.62
2140 3033 2.342279 CCTGTCACGGCGAGGAAA 59.658 61.111 16.62 4.84 0.00 3.13
2201 3094 5.610975 CACGAAAACATGCAATTTTCATCC 58.389 37.500 26.50 10.82 43.32 3.51
2226 3119 2.166050 TGACCGATTTTGCCATTGGATG 59.834 45.455 6.95 0.00 32.42 3.51
2237 3130 8.792633 TGAATTTGACTTTCTATGACCGATTTT 58.207 29.630 0.00 0.00 0.00 1.82
2240 3133 7.770433 TCATGAATTTGACTTTCTATGACCGAT 59.230 33.333 0.00 0.00 0.00 4.18
2241 3134 7.102993 TCATGAATTTGACTTTCTATGACCGA 58.897 34.615 0.00 0.00 0.00 4.69
2242 3135 7.307493 TCATGAATTTGACTTTCTATGACCG 57.693 36.000 0.00 0.00 0.00 4.79
2257 3151 5.163374 GCCCTCCTGCTTAATTCATGAATTT 60.163 40.000 32.57 19.29 40.99 1.82
2294 3188 6.072508 TGCAAAGTTGAGTCAACCAGATAATC 60.073 38.462 28.29 12.52 44.49 1.75
2362 3256 6.538021 GTCAAGACATATTGTGCATCTTCTCT 59.462 38.462 0.00 0.00 0.00 3.10
2368 3262 6.314648 TCTCTTGTCAAGACATATTGTGCATC 59.685 38.462 11.36 0.00 41.52 3.91
2377 3271 5.482006 CACCACATCTCTTGTCAAGACATA 58.518 41.667 11.36 1.05 41.52 2.29
2389 3283 2.557555 TCTGATCCCACCACATCTCT 57.442 50.000 0.00 0.00 0.00 3.10
2396 3290 3.509442 AGCAATTTTTCTGATCCCACCA 58.491 40.909 0.00 0.00 0.00 4.17
2397 3291 4.248058 CAAGCAATTTTTCTGATCCCACC 58.752 43.478 0.00 0.00 0.00 4.61
2398 3292 4.886579 ACAAGCAATTTTTCTGATCCCAC 58.113 39.130 0.00 0.00 0.00 4.61
2439 3333 1.542915 CATTTGACAAGAGCACCCCAG 59.457 52.381 0.00 0.00 0.00 4.45
2457 3357 5.878116 CCATGATTGACTTTGGAAATTGCAT 59.122 36.000 0.00 0.00 0.00 3.96
2468 3368 2.596346 TGTGCCACCATGATTGACTTT 58.404 42.857 0.00 0.00 0.00 2.66
2473 3373 2.756207 TCTGAATGTGCCACCATGATTG 59.244 45.455 0.00 0.00 0.00 2.67
2479 3379 1.894466 CCATTTCTGAATGTGCCACCA 59.106 47.619 0.00 0.00 40.85 4.17
2580 3480 7.932120 CGCAAGCACTAGTTATTCTATAACT 57.068 36.000 14.46 14.46 40.48 2.24
2604 3504 6.874288 AATATAGAGCAATTTCTCACAGGC 57.126 37.500 7.86 0.00 35.59 4.85
2652 3552 9.174166 GGTTCTACAATACAATCAATACTGGTT 57.826 33.333 0.00 0.00 0.00 3.67
2653 3553 8.548877 AGGTTCTACAATACAATCAATACTGGT 58.451 33.333 0.00 0.00 0.00 4.00
2654 3554 8.964476 AGGTTCTACAATACAATCAATACTGG 57.036 34.615 0.00 0.00 0.00 4.00
2655 3555 8.755941 CGAGGTTCTACAATACAATCAATACTG 58.244 37.037 0.00 0.00 0.00 2.74
2656 3556 8.475639 ACGAGGTTCTACAATACAATCAATACT 58.524 33.333 0.00 0.00 0.00 2.12
2657 3557 8.644318 ACGAGGTTCTACAATACAATCAATAC 57.356 34.615 0.00 0.00 0.00 1.89
2658 3558 9.309516 GAACGAGGTTCTACAATACAATCAATA 57.690 33.333 1.41 0.00 39.23 1.90
2659 3559 7.822334 TGAACGAGGTTCTACAATACAATCAAT 59.178 33.333 9.61 0.00 42.39 2.57
2660 3560 7.156000 TGAACGAGGTTCTACAATACAATCAA 58.844 34.615 9.61 0.00 42.39 2.57
2661 3561 6.693466 TGAACGAGGTTCTACAATACAATCA 58.307 36.000 9.61 0.00 42.39 2.57
2662 3562 7.254455 CCATGAACGAGGTTCTACAATACAATC 60.254 40.741 9.61 0.00 42.39 2.67
2663 3563 6.538742 CCATGAACGAGGTTCTACAATACAAT 59.461 38.462 9.61 0.00 42.39 2.71
2664 3564 5.872617 CCATGAACGAGGTTCTACAATACAA 59.127 40.000 9.61 0.00 42.39 2.41
2665 3565 5.046878 ACCATGAACGAGGTTCTACAATACA 60.047 40.000 9.61 0.00 42.39 2.29
2666 3566 5.416947 ACCATGAACGAGGTTCTACAATAC 58.583 41.667 9.61 0.00 42.39 1.89
2667 3567 5.670792 ACCATGAACGAGGTTCTACAATA 57.329 39.130 9.61 0.00 42.39 1.90
2668 3568 4.553330 ACCATGAACGAGGTTCTACAAT 57.447 40.909 9.61 0.00 42.39 2.71
2669 3569 4.062293 CAACCATGAACGAGGTTCTACAA 58.938 43.478 9.61 0.00 45.93 2.41
2670 3570 3.070446 ACAACCATGAACGAGGTTCTACA 59.930 43.478 9.61 0.00 45.93 2.74
2671 3571 3.432252 CACAACCATGAACGAGGTTCTAC 59.568 47.826 9.61 0.00 45.93 2.59
2672 3572 3.659786 CACAACCATGAACGAGGTTCTA 58.340 45.455 9.61 0.00 45.93 2.10
2673 3573 2.494059 CACAACCATGAACGAGGTTCT 58.506 47.619 9.61 0.00 45.93 3.01
2674 3574 1.069227 GCACAACCATGAACGAGGTTC 60.069 52.381 0.00 1.65 45.93 3.62
2676 3576 0.179032 TGCACAACCATGAACGAGGT 60.179 50.000 0.00 0.00 40.61 3.85
2677 3577 0.518636 CTGCACAACCATGAACGAGG 59.481 55.000 0.00 0.00 0.00 4.63
2678 3578 1.229428 ACTGCACAACCATGAACGAG 58.771 50.000 0.00 0.00 0.00 4.18
2679 3579 1.674359 AACTGCACAACCATGAACGA 58.326 45.000 0.00 0.00 0.00 3.85
2680 3580 3.249799 TCTTAACTGCACAACCATGAACG 59.750 43.478 0.00 0.00 0.00 3.95
2681 3581 4.829064 TCTTAACTGCACAACCATGAAC 57.171 40.909 0.00 0.00 0.00 3.18
2682 3582 4.826733 ACATCTTAACTGCACAACCATGAA 59.173 37.500 0.00 0.00 0.00 2.57
2683 3583 4.397420 ACATCTTAACTGCACAACCATGA 58.603 39.130 0.00 0.00 0.00 3.07
2684 3584 4.771590 ACATCTTAACTGCACAACCATG 57.228 40.909 0.00 0.00 0.00 3.66
2685 3585 5.789643 AAACATCTTAACTGCACAACCAT 57.210 34.783 0.00 0.00 0.00 3.55
2686 3586 6.714810 AGATAAACATCTTAACTGCACAACCA 59.285 34.615 0.00 0.00 0.00 3.67
2687 3587 7.023575 CAGATAAACATCTTAACTGCACAACC 58.976 38.462 0.00 0.00 0.00 3.77
2688 3588 7.535258 CACAGATAAACATCTTAACTGCACAAC 59.465 37.037 0.00 0.00 30.76 3.32
2689 3589 7.443879 TCACAGATAAACATCTTAACTGCACAA 59.556 33.333 0.00 0.00 30.76 3.33
2690 3590 6.934083 TCACAGATAAACATCTTAACTGCACA 59.066 34.615 0.00 0.00 30.76 4.57
2691 3591 7.331934 TCTCACAGATAAACATCTTAACTGCAC 59.668 37.037 0.00 0.00 30.76 4.57
2692 3592 7.386059 TCTCACAGATAAACATCTTAACTGCA 58.614 34.615 0.00 0.00 30.76 4.41
2693 3593 7.834068 TCTCACAGATAAACATCTTAACTGC 57.166 36.000 0.00 0.00 30.76 4.40
2699 3599 9.950496 AACACTATTCTCACAGATAAACATCTT 57.050 29.630 0.00 0.00 0.00 2.40
2700 3600 9.950496 AAACACTATTCTCACAGATAAACATCT 57.050 29.630 0.00 0.00 0.00 2.90
2728 3628 6.772233 TGTCTGACCAGATCATTTCAGAAAAA 59.228 34.615 17.13 7.66 44.62 1.94
2729 3629 6.205464 GTGTCTGACCAGATCATTTCAGAAAA 59.795 38.462 17.13 9.43 44.62 2.29
2730 3630 5.702670 GTGTCTGACCAGATCATTTCAGAAA 59.297 40.000 17.13 11.88 44.62 2.52
2731 3631 5.240891 GTGTCTGACCAGATCATTTCAGAA 58.759 41.667 17.13 8.77 44.62 3.02
2732 3632 4.619160 CGTGTCTGACCAGATCATTTCAGA 60.619 45.833 13.36 13.36 41.71 3.27
2733 3633 3.615937 CGTGTCTGACCAGATCATTTCAG 59.384 47.826 5.17 9.94 39.97 3.02
2734 3634 3.006859 ACGTGTCTGACCAGATCATTTCA 59.993 43.478 5.17 0.00 39.97 2.69
2735 3635 3.589988 ACGTGTCTGACCAGATCATTTC 58.410 45.455 5.17 0.00 39.97 2.17
2736 3636 3.685139 ACGTGTCTGACCAGATCATTT 57.315 42.857 5.17 0.00 39.97 2.32
2737 3637 3.685139 AACGTGTCTGACCAGATCATT 57.315 42.857 5.17 0.00 39.97 2.57
2738 3638 3.685139 AAACGTGTCTGACCAGATCAT 57.315 42.857 5.17 0.00 39.97 2.45
2739 3639 3.469008 AAAACGTGTCTGACCAGATCA 57.531 42.857 5.17 1.40 39.97 2.92
2740 3640 5.917541 TTTAAAACGTGTCTGACCAGATC 57.082 39.130 5.17 0.11 39.97 2.75
2741 3641 6.072673 GGAATTTAAAACGTGTCTGACCAGAT 60.073 38.462 5.17 0.00 39.97 2.90
2742 3642 5.237779 GGAATTTAAAACGTGTCTGACCAGA 59.762 40.000 5.17 0.00 34.56 3.86
2743 3643 5.238650 AGGAATTTAAAACGTGTCTGACCAG 59.761 40.000 5.17 1.79 0.00 4.00
2744 3644 5.127491 AGGAATTTAAAACGTGTCTGACCA 58.873 37.500 5.17 0.00 0.00 4.02
2745 3645 5.684550 AGGAATTTAAAACGTGTCTGACC 57.315 39.130 5.17 0.00 0.00 4.02
2746 3646 7.514591 GCAAAAGGAATTTAAAACGTGTCTGAC 60.515 37.037 0.00 0.00 0.00 3.51
2747 3647 6.474102 GCAAAAGGAATTTAAAACGTGTCTGA 59.526 34.615 0.00 0.00 0.00 3.27
2748 3648 6.475402 AGCAAAAGGAATTTAAAACGTGTCTG 59.525 34.615 0.00 0.00 0.00 3.51
2749 3649 6.569780 AGCAAAAGGAATTTAAAACGTGTCT 58.430 32.000 0.00 0.00 0.00 3.41
2750 3650 6.822073 AGCAAAAGGAATTTAAAACGTGTC 57.178 33.333 0.00 0.00 0.00 3.67
2751 3651 6.592220 ACAAGCAAAAGGAATTTAAAACGTGT 59.408 30.769 0.00 0.00 0.00 4.49
2752 3652 6.999456 ACAAGCAAAAGGAATTTAAAACGTG 58.001 32.000 0.00 0.00 0.00 4.49
2753 3653 8.705048 TTACAAGCAAAAGGAATTTAAAACGT 57.295 26.923 0.00 0.00 0.00 3.99
2754 3654 9.416058 GTTTACAAGCAAAAGGAATTTAAAACG 57.584 29.630 0.00 0.00 0.00 3.60
2758 3658 9.877178 TGAAGTTTACAAGCAAAAGGAATTTAA 57.123 25.926 0.00 0.00 0.00 1.52
2759 3659 9.528018 CTGAAGTTTACAAGCAAAAGGAATTTA 57.472 29.630 0.00 0.00 0.00 1.40
2760 3660 8.040727 ACTGAAGTTTACAAGCAAAAGGAATTT 58.959 29.630 0.00 0.00 0.00 1.82
2761 3661 7.555965 ACTGAAGTTTACAAGCAAAAGGAATT 58.444 30.769 0.00 0.00 0.00 2.17
2762 3662 7.112452 ACTGAAGTTTACAAGCAAAAGGAAT 57.888 32.000 0.00 0.00 0.00 3.01
2763 3663 6.524101 ACTGAAGTTTACAAGCAAAAGGAA 57.476 33.333 0.00 0.00 0.00 3.36
2764 3664 6.524101 AACTGAAGTTTACAAGCAAAAGGA 57.476 33.333 0.00 0.00 33.93 3.36
2765 3665 6.589907 ACAAACTGAAGTTTACAAGCAAAAGG 59.410 34.615 8.06 0.00 45.54 3.11
2766 3666 7.581011 ACAAACTGAAGTTTACAAGCAAAAG 57.419 32.000 8.06 0.00 45.54 2.27
2767 3667 8.516234 TCTACAAACTGAAGTTTACAAGCAAAA 58.484 29.630 8.06 0.00 45.54 2.44
2768 3668 8.046294 TCTACAAACTGAAGTTTACAAGCAAA 57.954 30.769 8.06 0.00 45.54 3.68
2769 3669 7.618502 TCTACAAACTGAAGTTTACAAGCAA 57.381 32.000 8.06 0.00 45.54 3.91
2770 3670 7.618502 TTCTACAAACTGAAGTTTACAAGCA 57.381 32.000 8.06 0.00 45.54 3.91
2778 3678 8.989980 GCACTAGTTATTCTACAAACTGAAGTT 58.010 33.333 0.00 0.00 40.50 2.66
2779 3679 8.368668 AGCACTAGTTATTCTACAAACTGAAGT 58.631 33.333 0.00 0.00 36.62 3.01
2780 3680 8.764524 AGCACTAGTTATTCTACAAACTGAAG 57.235 34.615 0.00 0.00 36.62 3.02
2781 3681 8.988934 CAAGCACTAGTTATTCTACAAACTGAA 58.011 33.333 0.00 0.00 36.62 3.02
2782 3682 7.117812 GCAAGCACTAGTTATTCTACAAACTGA 59.882 37.037 0.00 0.00 36.62 3.41
2783 3683 7.237173 GCAAGCACTAGTTATTCTACAAACTG 58.763 38.462 0.00 0.00 36.62 3.16
2784 3684 6.090898 CGCAAGCACTAGTTATTCTACAAACT 59.909 38.462 0.00 0.00 39.25 2.66
2785 3685 6.241385 CGCAAGCACTAGTTATTCTACAAAC 58.759 40.000 0.00 0.00 0.00 2.93
2786 3686 6.403333 CGCAAGCACTAGTTATTCTACAAA 57.597 37.500 0.00 0.00 0.00 2.83
2804 3704 1.973138 CAATTTCTCACAGGCGCAAG 58.027 50.000 10.83 2.59 43.44 4.01
2805 3705 0.039256 GCAATTTCTCACAGGCGCAA 60.039 50.000 10.83 0.00 0.00 4.85
2806 3706 0.890542 AGCAATTTCTCACAGGCGCA 60.891 50.000 10.83 0.00 0.00 6.09
2807 3707 0.179179 GAGCAATTTCTCACAGGCGC 60.179 55.000 0.00 0.00 33.41 6.53
2808 3708 1.396301 GAGAGCAATTTCTCACAGGCG 59.604 52.381 7.86 0.00 42.53 5.52
2809 3709 2.709213 AGAGAGCAATTTCTCACAGGC 58.291 47.619 7.86 0.00 44.85 4.85
2810 3710 6.998968 AAATAGAGAGCAATTTCTCACAGG 57.001 37.500 7.86 0.00 44.85 4.00
2811 3711 8.266392 AGAAAATAGAGAGCAATTTCTCACAG 57.734 34.615 7.86 0.00 44.85 3.66
2818 3718 9.171877 CCAAGTAGAGAAAATAGAGAGCAATTT 57.828 33.333 0.00 0.00 0.00 1.82
2819 3719 8.325046 ACCAAGTAGAGAAAATAGAGAGCAATT 58.675 33.333 0.00 0.00 0.00 2.32
2820 3720 7.768120 CACCAAGTAGAGAAAATAGAGAGCAAT 59.232 37.037 0.00 0.00 0.00 3.56
2821 3721 7.099764 CACCAAGTAGAGAAAATAGAGAGCAA 58.900 38.462 0.00 0.00 0.00 3.91
2822 3722 6.211584 ACACCAAGTAGAGAAAATAGAGAGCA 59.788 38.462 0.00 0.00 0.00 4.26
2823 3723 6.635755 ACACCAAGTAGAGAAAATAGAGAGC 58.364 40.000 0.00 0.00 0.00 4.09
2824 3724 8.307483 TCAACACCAAGTAGAGAAAATAGAGAG 58.693 37.037 0.00 0.00 0.00 3.20
2825 3725 8.190326 TCAACACCAAGTAGAGAAAATAGAGA 57.810 34.615 0.00 0.00 0.00 3.10
2828 3728 8.821894 GCTATCAACACCAAGTAGAGAAAATAG 58.178 37.037 0.00 0.00 0.00 1.73
2829 3729 8.318412 TGCTATCAACACCAAGTAGAGAAAATA 58.682 33.333 0.00 0.00 0.00 1.40
2830 3730 7.119846 GTGCTATCAACACCAAGTAGAGAAAAT 59.880 37.037 0.00 0.00 31.67 1.82
2831 3731 6.426937 GTGCTATCAACACCAAGTAGAGAAAA 59.573 38.462 0.00 0.00 31.67 2.29
2832 3732 5.932303 GTGCTATCAACACCAAGTAGAGAAA 59.068 40.000 0.00 0.00 31.67 2.52
2833 3733 5.011635 TGTGCTATCAACACCAAGTAGAGAA 59.988 40.000 0.00 0.00 37.22 2.87
2834 3734 4.526650 TGTGCTATCAACACCAAGTAGAGA 59.473 41.667 0.00 0.00 37.22 3.10
2835 3735 4.820897 TGTGCTATCAACACCAAGTAGAG 58.179 43.478 0.00 0.00 37.22 2.43
2836 3736 4.882842 TGTGCTATCAACACCAAGTAGA 57.117 40.909 0.00 0.00 37.22 2.59
2837 3737 5.643348 TGATTGTGCTATCAACACCAAGTAG 59.357 40.000 0.00 0.00 37.22 2.57
2838 3738 5.555966 TGATTGTGCTATCAACACCAAGTA 58.444 37.500 0.00 0.00 37.22 2.24
2839 3739 4.397420 TGATTGTGCTATCAACACCAAGT 58.603 39.130 0.00 0.00 37.22 3.16
2840 3740 4.456911 ACTGATTGTGCTATCAACACCAAG 59.543 41.667 0.00 0.00 37.22 3.61
2841 3741 4.397420 ACTGATTGTGCTATCAACACCAA 58.603 39.130 0.00 0.00 37.22 3.67
2842 3742 4.019792 ACTGATTGTGCTATCAACACCA 57.980 40.909 0.00 0.00 37.22 4.17
2843 3743 6.316140 TCAATACTGATTGTGCTATCAACACC 59.684 38.462 0.00 0.00 42.71 4.16
2844 3744 7.307493 TCAATACTGATTGTGCTATCAACAC 57.693 36.000 0.00 0.00 42.71 3.32
2884 3944 1.172180 AACTGCACCACCATGAACGG 61.172 55.000 0.00 0.00 0.00 4.44
2934 4008 6.205464 GTGTCTGACCAGATCATTTCAGAAAA 59.795 38.462 17.13 9.43 44.62 2.29
2964 4038 9.528018 CTGAAGTTTACAAGCAAAAGGAATTTA 57.472 29.630 0.00 0.00 0.00 1.40
3013 4087 0.321919 AGAGCAATTTCTCGCAGGCA 60.322 50.000 0.00 0.00 38.12 4.75
3033 4107 9.331282 GCTATCAACACCAAGTAGAGAAAATAT 57.669 33.333 0.00 0.00 0.00 1.28
3045 4120 4.456911 ACAGATTGTGCTATCAACACCAAG 59.543 41.667 0.00 0.00 37.22 3.61
3046 4121 4.397420 ACAGATTGTGCTATCAACACCAA 58.603 39.130 0.00 0.00 37.22 3.67
3064 4139 7.936847 AGGTTCTACAACACAAATTGATACAGA 59.063 33.333 0.00 0.00 33.70 3.41
3072 4147 5.995282 TGATCGAGGTTCTACAACACAAATT 59.005 36.000 0.00 0.00 33.70 1.82
3075 4150 4.594123 TGATCGAGGTTCTACAACACAA 57.406 40.909 0.00 0.00 33.70 3.33
3076 4151 4.494484 CATGATCGAGGTTCTACAACACA 58.506 43.478 0.00 0.00 33.70 3.72
3080 4155 3.430790 CCAGCATGATCGAGGTTCTACAA 60.431 47.826 0.00 0.00 39.69 2.41
3158 4233 9.386122 AGAGGACTATGTCTGACCATATTATTT 57.614 33.333 5.17 0.00 32.47 1.40
3159 4234 8.964533 AGAGGACTATGTCTGACCATATTATT 57.035 34.615 5.17 0.00 32.47 1.40
3160 4235 8.173412 TGAGAGGACTATGTCTGACCATATTAT 58.827 37.037 5.17 0.00 32.47 1.28
3161 4236 7.526918 TGAGAGGACTATGTCTGACCATATTA 58.473 38.462 5.17 0.00 32.47 0.98
3162 4237 6.377080 TGAGAGGACTATGTCTGACCATATT 58.623 40.000 5.17 0.00 32.47 1.28
3163 4238 5.958321 TGAGAGGACTATGTCTGACCATAT 58.042 41.667 5.17 0.00 32.47 1.78
3164 4239 5.388599 TGAGAGGACTATGTCTGACCATA 57.611 43.478 5.17 3.10 32.47 2.74
3165 4240 4.256983 TGAGAGGACTATGTCTGACCAT 57.743 45.455 5.17 2.07 32.47 3.55
3166 4241 3.739401 TGAGAGGACTATGTCTGACCA 57.261 47.619 5.17 0.00 32.47 4.02
3167 4242 4.521256 GGTATGAGAGGACTATGTCTGACC 59.479 50.000 5.17 0.00 32.47 4.02
3168 4243 5.009210 GTGGTATGAGAGGACTATGTCTGAC 59.991 48.000 0.00 0.00 32.47 3.51
3169 4244 5.133941 GTGGTATGAGAGGACTATGTCTGA 58.866 45.833 0.00 0.00 32.47 3.27
3170 4245 4.889995 TGTGGTATGAGAGGACTATGTCTG 59.110 45.833 0.00 0.00 32.47 3.51
3171 4246 5.130705 TGTGGTATGAGAGGACTATGTCT 57.869 43.478 0.00 0.00 32.47 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.