Multiple sequence alignment - TraesCS7A01G148800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G148800 chr7A 100.000 4509 0 0 1 4509 102055223 102059731 0.000000e+00 8327
1 TraesCS7A01G148800 chr7A 86.300 2343 289 27 1 2329 675494211 675496535 0.000000e+00 2519
2 TraesCS7A01G148800 chr7A 84.126 1178 159 19 2345 3511 675496841 675498001 0.000000e+00 1114
3 TraesCS7A01G148800 chr7A 83.070 697 96 9 3805 4501 675498276 675498950 8.290000e-172 614
4 TraesCS7A01G148800 chr7D 83.958 4538 599 86 1 4502 86073231 86068787 0.000000e+00 4228
5 TraesCS7A01G148800 chr2B 84.350 2377 328 34 1164 3511 259686966 259689327 0.000000e+00 2289
6 TraesCS7A01G148800 chr2B 87.417 1057 123 9 1 1054 259685535 259686584 0.000000e+00 1206
7 TraesCS7A01G148800 chr2B 75.548 1460 259 70 1730 3137 11907861 11909274 2.960000e-176 628
8 TraesCS7A01G148800 chr2B 83.309 695 95 10 3815 4509 259689616 259690289 4.950000e-174 621
9 TraesCS7A01G148800 chrUn 96.183 1048 34 4 1 1046 48372857 48371814 0.000000e+00 1709
10 TraesCS7A01G148800 chrUn 96.183 1048 34 4 1 1046 318400736 318401779 0.000000e+00 1709
11 TraesCS7A01G148800 chr5B 83.661 1732 227 35 954 2667 126444472 126446165 0.000000e+00 1580
12 TraesCS7A01G148800 chr5B 83.678 821 117 15 2701 3511 126446505 126447318 0.000000e+00 758
13 TraesCS7A01G148800 chr2D 86.135 1392 159 28 1 1374 431392434 431391059 0.000000e+00 1471
14 TraesCS7A01G148800 chr1A 96.076 841 29 2 202 1042 570105510 570104674 0.000000e+00 1367
15 TraesCS7A01G148800 chr3B 75.953 1784 352 57 44 1802 232563355 232565086 0.000000e+00 846
16 TraesCS7A01G148800 chr3B 76.444 1091 202 40 2084 3137 232566744 232567816 1.430000e-149 540
17 TraesCS7A01G148800 chr5A 82.258 806 138 4 50 853 570228455 570227653 0.000000e+00 691
18 TraesCS7A01G148800 chr5A 83.643 269 40 4 2869 3135 570216289 570216023 2.690000e-62 250


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G148800 chr7A 102055223 102059731 4508 False 8327.000000 8327 100.000000 1 4509 1 chr7A.!!$F1 4508
1 TraesCS7A01G148800 chr7A 675494211 675498950 4739 False 1415.666667 2519 84.498667 1 4501 3 chr7A.!!$F2 4500
2 TraesCS7A01G148800 chr7D 86068787 86073231 4444 True 4228.000000 4228 83.958000 1 4502 1 chr7D.!!$R1 4501
3 TraesCS7A01G148800 chr2B 259685535 259690289 4754 False 1372.000000 2289 85.025333 1 4509 3 chr2B.!!$F2 4508
4 TraesCS7A01G148800 chr2B 11907861 11909274 1413 False 628.000000 628 75.548000 1730 3137 1 chr2B.!!$F1 1407
5 TraesCS7A01G148800 chrUn 48371814 48372857 1043 True 1709.000000 1709 96.183000 1 1046 1 chrUn.!!$R1 1045
6 TraesCS7A01G148800 chrUn 318400736 318401779 1043 False 1709.000000 1709 96.183000 1 1046 1 chrUn.!!$F1 1045
7 TraesCS7A01G148800 chr5B 126444472 126447318 2846 False 1169.000000 1580 83.669500 954 3511 2 chr5B.!!$F1 2557
8 TraesCS7A01G148800 chr2D 431391059 431392434 1375 True 1471.000000 1471 86.135000 1 1374 1 chr2D.!!$R1 1373
9 TraesCS7A01G148800 chr1A 570104674 570105510 836 True 1367.000000 1367 96.076000 202 1042 1 chr1A.!!$R1 840
10 TraesCS7A01G148800 chr3B 232563355 232567816 4461 False 693.000000 846 76.198500 44 3137 2 chr3B.!!$F1 3093
11 TraesCS7A01G148800 chr5A 570227653 570228455 802 True 691.000000 691 82.258000 50 853 1 chr5A.!!$R2 803

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 617 3.389329 TCCCCTCAAATAGAGCATGACTC 59.611 47.826 0.00 2.7 46.66 3.36 F
1725 2017 0.036388 CACCGCCTCATGTACCAACT 60.036 55.000 0.00 0.0 0.00 3.16 F
1726 2018 0.249398 ACCGCCTCATGTACCAACTC 59.751 55.000 0.00 0.0 0.00 3.01 F
2440 4418 0.252761 TCGCTGCAGGAAATGGATCA 59.747 50.000 17.12 0.0 0.00 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2421 4399 0.252761 TGATCCATTTCCTGCAGCGA 59.747 50.0 8.66 4.33 0.0 4.93 R
3138 5471 0.106149 GGGTGGTCGACAGTCAAAGT 59.894 55.0 18.91 0.00 0.0 2.66 R
3215 5549 0.322456 TGCATTTGGGAGGGACGAAG 60.322 55.0 0.00 0.00 0.0 3.79 R
4198 6578 0.108945 GTTGCTGCCTTGGCTGATTC 60.109 55.0 20.21 5.45 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
314 316 7.118723 TGGAATGTTAGAGCTTAAATCATGGT 58.881 34.615 0.00 0.00 0.00 3.55
610 612 5.312708 AGAATCATCCCCTCAAATAGAGCAT 59.687 40.000 0.00 0.00 43.31 3.79
615 617 3.389329 TCCCCTCAAATAGAGCATGACTC 59.611 47.826 0.00 2.70 46.66 3.36
790 792 6.321181 TGTTCCAAGCTGTTAAGAAGTTCAAT 59.679 34.615 5.50 0.00 0.00 2.57
889 892 5.560722 TCCTTGGTCTTTCATGAAGTACA 57.439 39.130 18.51 10.69 36.70 2.90
987 996 4.270834 TCGTACTAGACAGCCTTGATCTT 58.729 43.478 0.00 0.00 0.00 2.40
1038 1047 0.659427 CGCGGATAGGTCTGTACGAA 59.341 55.000 0.00 0.00 33.06 3.85
1065 1074 5.649395 TGATTTGATGAAGAAGATGGTGGAC 59.351 40.000 0.00 0.00 0.00 4.02
1077 1086 6.777580 AGAAGATGGTGGACAAAATTACAGTT 59.222 34.615 0.00 0.00 0.00 3.16
1089 1098 3.775661 ATTACAGTTAATGTTGGCGCC 57.224 42.857 22.73 22.73 39.96 6.53
1125 1139 2.083774 CACGGTGCAATGGTAATCACT 58.916 47.619 0.00 0.00 0.00 3.41
1131 1145 1.064017 GCAATGGTAATCACTCCCCCA 60.064 52.381 0.00 0.00 0.00 4.96
1137 1152 1.349688 GTAATCACTCCCCCACACACA 59.650 52.381 0.00 0.00 0.00 3.72
1146 1161 2.578480 TCCCCCACACACATGCTAAATA 59.422 45.455 0.00 0.00 0.00 1.40
1148 1163 4.413851 TCCCCCACACACATGCTAAATATA 59.586 41.667 0.00 0.00 0.00 0.86
1154 1169 8.412456 CCCACACACATGCTAAATATATTTTCA 58.588 33.333 15.64 13.69 0.00 2.69
1160 1441 9.390795 CACATGCTAAATATATTTTCAGTCTGC 57.609 33.333 15.64 9.48 0.00 4.26
1162 1443 9.390795 CATGCTAAATATATTTTCAGTCTGCAC 57.609 33.333 15.64 0.00 0.00 4.57
1232 1513 2.968206 GGTACGGACCGAGCTGTT 59.032 61.111 23.38 0.00 35.52 3.16
1245 1526 3.257393 CGAGCTGTTAGTGAGCAATCTT 58.743 45.455 0.00 0.00 39.05 2.40
1345 1633 4.046462 GCCGATGTTGCGAAGTAGTTATA 58.954 43.478 0.00 0.00 0.00 0.98
1356 1644 4.567959 CGAAGTAGTTATACCAAAACCGGG 59.432 45.833 6.32 0.00 31.78 5.73
1389 1677 7.073265 AGTTTTCAAATTACATACGAACACGG 58.927 34.615 0.00 0.00 0.00 4.94
1401 1689 1.530323 GAACACGGTACCCAAGCATT 58.470 50.000 6.25 0.00 0.00 3.56
1413 1701 3.821033 ACCCAAGCATTGTAAGTCACTTC 59.179 43.478 0.00 0.00 46.99 3.01
1436 1724 9.766277 CTTCTATTCAGTTAAGAAAGCATTCAC 57.234 33.333 4.27 0.00 38.06 3.18
1444 1732 8.270799 CAGTTAAGAAAGCATTCACACATTTTG 58.729 33.333 4.27 0.00 38.06 2.44
1453 1744 5.634439 GCATTCACACATTTTGTAGCATCAA 59.366 36.000 0.00 0.00 35.67 2.57
1459 1750 6.142798 CACACATTTTGTAGCATCAACTTGTC 59.857 38.462 0.00 0.00 35.67 3.18
1460 1751 6.183360 ACACATTTTGTAGCATCAACTTGTCA 60.183 34.615 0.00 0.00 36.32 3.58
1577 1869 4.542662 GCATATCAGAAATGCGTCAAGT 57.457 40.909 0.00 0.00 40.27 3.16
1628 1920 3.624777 ACAAGCTTATGGCATGCTTAGT 58.375 40.909 20.57 17.54 43.70 2.24
1686 1978 4.590850 AAAGTGCATCTTGGAAAAGGAC 57.409 40.909 0.00 0.00 36.40 3.85
1710 2002 1.065401 ACAAACACTTGTGATGCACCG 59.935 47.619 7.83 0.00 44.28 4.94
1720 2012 0.461870 TGATGCACCGCCTCATGTAC 60.462 55.000 0.00 0.00 29.00 2.90
1725 2017 0.036388 CACCGCCTCATGTACCAACT 60.036 55.000 0.00 0.00 0.00 3.16
1726 2018 0.249398 ACCGCCTCATGTACCAACTC 59.751 55.000 0.00 0.00 0.00 3.01
1728 2020 1.359848 CGCCTCATGTACCAACTCAC 58.640 55.000 0.00 0.00 0.00 3.51
1764 2056 3.433598 GCACCCCATTAGTCAGCAAGATA 60.434 47.826 0.00 0.00 0.00 1.98
1767 2059 3.392616 CCCCATTAGTCAGCAAGATAGGT 59.607 47.826 0.00 0.00 0.00 3.08
1770 2062 4.346418 CCATTAGTCAGCAAGATAGGTCCT 59.654 45.833 0.00 0.00 0.00 3.85
1816 2108 2.288030 GCAGGTAAGCAATCCATCATGC 60.288 50.000 0.00 0.00 42.87 4.06
1824 2116 4.032703 GCAATCCATCATGCTTACGTTT 57.967 40.909 0.00 0.00 39.46 3.60
1826 2118 4.500477 GCAATCCATCATGCTTACGTTTTC 59.500 41.667 0.00 0.00 39.46 2.29
1829 2121 5.041951 TCCATCATGCTTACGTTTTCAAC 57.958 39.130 0.00 0.00 0.00 3.18
1830 2122 4.517075 TCCATCATGCTTACGTTTTCAACA 59.483 37.500 0.00 0.00 0.00 3.33
1833 2125 6.183360 CCATCATGCTTACGTTTTCAACATTG 60.183 38.462 0.00 0.00 0.00 2.82
1851 2143 9.800433 TCAACATTGAAATGCATATAAACGATT 57.200 25.926 0.00 0.00 40.04 3.34
1910 2218 2.417719 CCTATCTGCCAATAGTTCCGC 58.582 52.381 2.78 0.00 0.00 5.54
1912 2220 0.532862 ATCTGCCAATAGTTCCGCGG 60.533 55.000 22.12 22.12 0.00 6.46
1929 2237 0.837272 CGGCTAGGAAAAGGGATGGA 59.163 55.000 0.00 0.00 0.00 3.41
1984 2292 4.552166 AAGAAAACATGTTCACGTGAGG 57.448 40.909 19.11 12.00 36.72 3.86
1991 2299 1.954146 GTTCACGTGAGGCGCAGAA 60.954 57.895 19.11 0.00 46.11 3.02
2034 2342 1.620822 ATGGGCAAGAACCACTCAAC 58.379 50.000 0.00 0.00 41.58 3.18
2041 2349 3.803778 GCAAGAACCACTCAACCAAATTG 59.196 43.478 0.00 0.00 39.94 2.32
2060 2368 1.202964 TGCCATATCCCAGGATGCAAG 60.203 52.381 9.54 0.00 36.17 4.01
2139 3826 7.492524 TCTTGGTTACTTACTATGCTGAGATG 58.507 38.462 0.00 0.00 0.00 2.90
2142 3829 3.377346 ACTTACTATGCTGAGATGCGG 57.623 47.619 0.00 0.00 35.36 5.69
2217 3905 5.480642 AGATCGATCTACCTCAATGCAAT 57.519 39.130 26.27 0.00 34.85 3.56
2356 4334 3.737559 ACATCCCCTGTGCATTAAAGA 57.262 42.857 0.00 0.00 36.48 2.52
2411 4389 8.940952 GTCTTCTCATTTAGTAACTGCATCTTT 58.059 33.333 0.00 0.00 0.00 2.52
2421 4399 7.472334 AGTAACTGCATCTTTCCAATCAAAT 57.528 32.000 0.00 0.00 0.00 2.32
2440 4418 0.252761 TCGCTGCAGGAAATGGATCA 59.747 50.000 17.12 0.00 0.00 2.92
2464 4442 4.883585 TGCATCCTAAGCCAAAACTCATAG 59.116 41.667 0.00 0.00 0.00 2.23
2475 4453 4.823989 CCAAAACTCATAGCATTAGAGGGG 59.176 45.833 0.00 0.00 33.76 4.79
2487 4465 4.609301 CATTAGAGGGGGTTGAAATCCAA 58.391 43.478 0.00 0.00 0.00 3.53
2541 4519 6.675987 CCATGAGATGGCTAAAGCTATTTTC 58.324 40.000 2.14 4.95 44.70 2.29
2545 4523 1.668751 TGGCTAAAGCTATTTTCCGCG 59.331 47.619 0.00 0.00 41.70 6.46
2608 4586 5.310409 TGGACTGATATGGAGGAAATTCC 57.690 43.478 3.29 3.29 37.77 3.01
2632 4610 1.694150 AGCCTGACTTTGCTGTGAGTA 59.306 47.619 0.00 0.00 36.23 2.59
2644 4622 2.616510 GCTGTGAGTATTTCCAGCACCT 60.617 50.000 5.67 0.00 43.63 4.00
2656 4661 1.566231 CCAGCACCTCCCCTTAATTCT 59.434 52.381 0.00 0.00 0.00 2.40
2670 4675 5.325239 CCTTAATTCTCCACCCTTTTCTGT 58.675 41.667 0.00 0.00 0.00 3.41
2737 5048 0.744414 CGAATGCCGACCCATTGACT 60.744 55.000 1.55 0.00 41.76 3.41
2743 5054 1.722011 CCGACCCATTGACTGTACAC 58.278 55.000 0.00 0.00 0.00 2.90
2765 5076 4.018415 ACTCAATTAGGGCTAGCTTCCAAA 60.018 41.667 15.72 5.73 0.00 3.28
2811 5122 1.079405 CGTGCCGAATGGTAGGTGT 60.079 57.895 0.00 0.00 37.67 4.16
2817 5150 3.754323 TGCCGAATGGTAGGTGTTTTTAG 59.246 43.478 0.00 0.00 37.67 1.85
2822 5155 5.163854 CGAATGGTAGGTGTTTTTAGCAGAG 60.164 44.000 0.00 0.00 31.62 3.35
2830 5163 4.152580 GGTGTTTTTAGCAGAGCTAGTGTC 59.847 45.833 0.00 0.00 42.34 3.67
2831 5164 4.750098 GTGTTTTTAGCAGAGCTAGTGTCA 59.250 41.667 0.00 0.00 42.34 3.58
2833 5166 5.997746 TGTTTTTAGCAGAGCTAGTGTCAAT 59.002 36.000 0.00 0.00 42.34 2.57
2843 5176 7.394872 CAGAGCTAGTGTCAATTTTTACGATC 58.605 38.462 0.00 0.00 0.00 3.69
2848 5181 6.009115 AGTGTCAATTTTTACGATCCCAAC 57.991 37.500 0.00 0.00 0.00 3.77
2865 5198 5.402630 TCCCAACTCACTGATATGCCTATA 58.597 41.667 0.00 0.00 0.00 1.31
2881 5214 7.921041 ATGCCTATATATATGCAGTGGTACT 57.079 36.000 22.04 6.55 37.33 2.73
2902 5235 3.219176 TCCCGACGATACTACCTGATT 57.781 47.619 0.00 0.00 0.00 2.57
2952 5285 5.403897 TGCGGAAAAGAATCATCGTATTC 57.596 39.130 0.00 0.00 36.33 1.75
2988 5321 2.228822 GCCATTTGGGTATAGCAATCGG 59.771 50.000 4.02 0.00 39.65 4.18
3057 5390 3.896888 TGTTCACATGCCTCCAGAATTTT 59.103 39.130 0.00 0.00 0.00 1.82
3104 5437 2.181525 CTGGGGGCGCATTTTTCG 59.818 61.111 10.83 0.00 0.00 3.46
3123 5456 6.693315 TTTCGGATCATAATGAGGGAAAAC 57.307 37.500 0.00 0.00 0.00 2.43
3138 5471 5.324409 AGGGAAAACATTGAGAAGTATGCA 58.676 37.500 0.00 0.00 0.00 3.96
3139 5472 5.183904 AGGGAAAACATTGAGAAGTATGCAC 59.816 40.000 0.00 0.00 0.00 4.57
3142 5475 7.147976 GGAAAACATTGAGAAGTATGCACTTT 58.852 34.615 0.00 0.00 45.18 2.66
3144 5477 6.882610 AACATTGAGAAGTATGCACTTTGA 57.117 33.333 0.00 0.00 45.18 2.69
3156 5490 1.217882 CACTTTGACTGTCGACCACC 58.782 55.000 14.12 2.11 0.00 4.61
3172 5506 4.681244 CGACCACCCGACCTTCATAATTAA 60.681 45.833 0.00 0.00 0.00 1.40
3173 5507 4.520179 ACCACCCGACCTTCATAATTAAC 58.480 43.478 0.00 0.00 0.00 2.01
3174 5508 4.019141 ACCACCCGACCTTCATAATTAACA 60.019 41.667 0.00 0.00 0.00 2.41
3175 5509 4.574828 CCACCCGACCTTCATAATTAACAG 59.425 45.833 0.00 0.00 0.00 3.16
3177 5511 6.055588 CACCCGACCTTCATAATTAACAGAT 58.944 40.000 0.00 0.00 0.00 2.90
3224 5559 3.933861 ATTATTGGCTTCTTCGTCCCT 57.066 42.857 0.00 0.00 0.00 4.20
3249 5584 4.828925 GCAGAGAGCAGACCGGGC 62.829 72.222 6.32 0.52 44.79 6.13
3290 5625 2.701107 TGGAATTATGACGGCGACAAA 58.299 42.857 16.62 11.31 0.00 2.83
3293 5628 3.485216 GGAATTATGACGGCGACAAACTG 60.485 47.826 16.62 0.00 0.00 3.16
3294 5629 2.157834 TTATGACGGCGACAAACTGT 57.842 45.000 16.62 0.00 0.00 3.55
3301 5636 0.782384 GGCGACAAACTGTAGACACG 59.218 55.000 0.00 0.00 30.87 4.49
3305 5640 2.719556 CGACAAACTGTAGACACGACTG 59.280 50.000 0.00 0.00 0.00 3.51
3320 5655 6.018994 AGACACGACTGAACAAAGTATGTTTC 60.019 38.462 0.00 0.00 45.86 2.78
3323 5659 7.493320 ACACGACTGAACAAAGTATGTTTCTAA 59.507 33.333 0.00 0.00 45.86 2.10
3324 5660 8.495949 CACGACTGAACAAAGTATGTTTCTAAT 58.504 33.333 0.00 0.00 45.86 1.73
3325 5661 9.052759 ACGACTGAACAAAGTATGTTTCTAATT 57.947 29.630 0.00 0.00 45.86 1.40
3326 5662 9.318041 CGACTGAACAAAGTATGTTTCTAATTG 57.682 33.333 0.00 0.00 45.86 2.32
3327 5663 9.612620 GACTGAACAAAGTATGTTTCTAATTGG 57.387 33.333 0.00 0.00 45.86 3.16
3335 5673 8.433421 AAGTATGTTTCTAATTGGTCATACCG 57.567 34.615 19.19 0.00 42.58 4.02
3336 5674 7.562135 AGTATGTTTCTAATTGGTCATACCGT 58.438 34.615 19.19 8.83 42.58 4.83
3344 5682 6.987992 TCTAATTGGTCATACCGTATGGAAAC 59.012 38.462 16.80 8.92 42.58 2.78
3348 5686 3.527533 GTCATACCGTATGGAAACTGCA 58.472 45.455 16.80 0.00 39.21 4.41
3382 5721 6.500684 TTTGCTAATTCACACCATCTCTTC 57.499 37.500 0.00 0.00 0.00 2.87
3385 5724 4.813697 GCTAATTCACACCATCTCTTCCTC 59.186 45.833 0.00 0.00 0.00 3.71
3397 5736 1.216710 CTTCCTCCAGGACACGCTC 59.783 63.158 0.00 0.00 45.39 5.03
3406 5745 1.811266 GGACACGCTCGCATCACAT 60.811 57.895 0.00 0.00 0.00 3.21
3413 5752 0.879400 GCTCGCATCACATAGCAGCT 60.879 55.000 0.00 0.00 34.41 4.24
3481 5820 1.227853 AAACGACGCCCTTGAAGCT 60.228 52.632 0.00 0.00 0.00 3.74
3489 5828 0.600057 GCCCTTGAAGCTGTCAAAGG 59.400 55.000 16.06 16.06 46.81 3.11
3511 5850 6.173339 AGGATCGTTCATTGCTCTTTAGAAA 58.827 36.000 0.00 0.00 0.00 2.52
3513 5852 7.174946 AGGATCGTTCATTGCTCTTTAGAAAAA 59.825 33.333 0.00 0.00 0.00 1.94
3515 5854 7.259290 TCGTTCATTGCTCTTTAGAAAAACT 57.741 32.000 0.00 0.00 0.00 2.66
3517 5856 8.832521 TCGTTCATTGCTCTTTAGAAAAACTTA 58.167 29.630 0.00 0.00 0.00 2.24
3518 5857 8.892905 CGTTCATTGCTCTTTAGAAAAACTTAC 58.107 33.333 0.00 0.00 0.00 2.34
3519 5858 9.181805 GTTCATTGCTCTTTAGAAAAACTTACC 57.818 33.333 0.00 0.00 0.00 2.85
3520 5859 8.691661 TCATTGCTCTTTAGAAAAACTTACCT 57.308 30.769 0.00 0.00 0.00 3.08
3521 5860 9.131791 TCATTGCTCTTTAGAAAAACTTACCTT 57.868 29.630 0.00 0.00 0.00 3.50
3522 5861 9.750125 CATTGCTCTTTAGAAAAACTTACCTTT 57.250 29.630 0.00 0.00 0.00 3.11
3523 5862 9.967346 ATTGCTCTTTAGAAAAACTTACCTTTC 57.033 29.630 0.00 0.00 32.72 2.62
3524 5863 8.747538 TGCTCTTTAGAAAAACTTACCTTTCT 57.252 30.769 2.91 2.91 42.88 2.52
3525 5864 9.185680 TGCTCTTTAGAAAAACTTACCTTTCTT 57.814 29.630 2.68 0.00 41.15 2.52
3531 5870 9.777575 TTAGAAAAACTTACCTTTCTTTGAACG 57.222 29.630 2.68 0.00 41.15 3.95
3532 5871 7.823665 AGAAAAACTTACCTTTCTTTGAACGT 58.176 30.769 0.00 0.00 38.45 3.99
3533 5872 7.966753 AGAAAAACTTACCTTTCTTTGAACGTC 59.033 33.333 0.00 0.00 38.45 4.34
3534 5873 5.746307 AACTTACCTTTCTTTGAACGTCC 57.254 39.130 0.00 0.00 0.00 4.79
3542 5897 6.171213 CCTTTCTTTGAACGTCCCTAACTAT 58.829 40.000 0.00 0.00 0.00 2.12
3543 5898 6.653740 CCTTTCTTTGAACGTCCCTAACTATT 59.346 38.462 0.00 0.00 0.00 1.73
3549 5904 5.867330 TGAACGTCCCTAACTATTGGAAAA 58.133 37.500 0.00 0.00 0.00 2.29
3550 5905 6.297582 TGAACGTCCCTAACTATTGGAAAAA 58.702 36.000 0.00 0.00 0.00 1.94
3551 5906 6.205270 TGAACGTCCCTAACTATTGGAAAAAC 59.795 38.462 0.00 0.00 0.00 2.43
3554 5909 5.353400 CGTCCCTAACTATTGGAAAAACCTC 59.647 44.000 0.00 0.00 39.86 3.85
3557 5913 6.504279 TCCCTAACTATTGGAAAAACCTCTCT 59.496 38.462 0.00 0.00 39.86 3.10
3559 5915 8.495260 CCCTAACTATTGGAAAAACCTCTCTAT 58.505 37.037 0.00 0.00 39.86 1.98
3564 5920 5.843019 TTGGAAAAACCTCTCTATCTGGT 57.157 39.130 0.00 0.00 39.86 4.00
3573 5929 6.681729 ACCTCTCTATCTGGTTTGTAACAA 57.318 37.500 0.00 0.00 0.00 2.83
3574 5930 7.259088 ACCTCTCTATCTGGTTTGTAACAAT 57.741 36.000 0.00 0.00 0.00 2.71
3575 5931 7.331791 ACCTCTCTATCTGGTTTGTAACAATC 58.668 38.462 0.00 0.00 0.00 2.67
3576 5932 7.038302 ACCTCTCTATCTGGTTTGTAACAATCA 60.038 37.037 0.00 0.00 0.00 2.57
3577 5933 7.493971 CCTCTCTATCTGGTTTGTAACAATCAG 59.506 40.741 0.00 0.00 0.00 2.90
3578 5934 7.907389 TCTCTATCTGGTTTGTAACAATCAGT 58.093 34.615 7.74 1.13 0.00 3.41
3579 5935 8.375506 TCTCTATCTGGTTTGTAACAATCAGTT 58.624 33.333 7.74 0.00 44.27 3.16
3582 5938 7.687941 ATCTGGTTTGTAACAATCAGTTAGG 57.312 36.000 7.74 0.00 43.06 2.69
3583 5939 6.833041 TCTGGTTTGTAACAATCAGTTAGGA 58.167 36.000 7.74 0.00 43.06 2.94
3584 5940 7.284074 TCTGGTTTGTAACAATCAGTTAGGAA 58.716 34.615 7.74 0.00 43.06 3.36
3586 5942 7.936584 TGGTTTGTAACAATCAGTTAGGAAAG 58.063 34.615 0.00 0.00 43.06 2.62
3610 5982 4.289672 ACCTGGACCAAAACTATGTCTGAT 59.710 41.667 0.00 0.00 0.00 2.90
3611 5983 5.222130 ACCTGGACCAAAACTATGTCTGATT 60.222 40.000 0.00 0.00 0.00 2.57
3616 5988 6.984474 GGACCAAAACTATGTCTGATTATCGA 59.016 38.462 0.00 0.00 0.00 3.59
3617 5989 7.042658 GGACCAAAACTATGTCTGATTATCGAC 60.043 40.741 9.18 9.18 0.00 4.20
3621 5993 5.968528 ACTATGTCTGATTATCGACTCCC 57.031 43.478 14.47 0.00 0.00 4.30
3622 5994 5.636123 ACTATGTCTGATTATCGACTCCCT 58.364 41.667 14.47 4.45 0.00 4.20
3629 6001 7.087639 GTCTGATTATCGACTCCCTCTTATTG 58.912 42.308 8.95 0.00 0.00 1.90
3630 6002 6.778069 TCTGATTATCGACTCCCTCTTATTGT 59.222 38.462 0.00 0.00 0.00 2.71
3631 6003 7.942894 TCTGATTATCGACTCCCTCTTATTGTA 59.057 37.037 0.00 0.00 0.00 2.41
3632 6004 8.651589 TGATTATCGACTCCCTCTTATTGTAT 57.348 34.615 0.00 0.00 0.00 2.29
3637 6009 8.887264 ATCGACTCCCTCTTATTGTATTAGAT 57.113 34.615 0.00 0.00 0.00 1.98
3638 6010 8.112016 TCGACTCCCTCTTATTGTATTAGATG 57.888 38.462 0.00 0.00 0.00 2.90
3639 6011 6.809196 CGACTCCCTCTTATTGTATTAGATGC 59.191 42.308 0.00 0.00 0.00 3.91
3640 6012 6.692486 ACTCCCTCTTATTGTATTAGATGCG 58.308 40.000 0.00 0.00 0.00 4.73
3643 6015 7.907389 TCCCTCTTATTGTATTAGATGCGAAT 58.093 34.615 0.00 0.00 0.00 3.34
3644 6016 8.035394 TCCCTCTTATTGTATTAGATGCGAATC 58.965 37.037 0.00 0.00 0.00 2.52
3655 6027 9.322776 GTATTAGATGCGAATCTTTTTAGCATG 57.677 33.333 12.19 0.00 46.89 4.06
3656 6028 5.179045 AGATGCGAATCTTTTTAGCATGG 57.821 39.130 0.00 0.00 46.89 3.66
3666 6038 4.943705 TCTTTTTAGCATGGCTGGTAGAAG 59.056 41.667 0.07 1.75 40.10 2.85
3668 6040 1.203237 TAGCATGGCTGGTAGAAGCA 58.797 50.000 0.07 0.00 45.43 3.91
3669 6041 0.107312 AGCATGGCTGGTAGAAGCAG 60.107 55.000 1.82 1.82 45.43 4.24
3689 6061 6.878317 AGCAGAAGTTCATATGCAACTAGTA 58.122 36.000 15.54 0.00 41.14 1.82
3690 6062 7.504403 AGCAGAAGTTCATATGCAACTAGTAT 58.496 34.615 15.54 5.74 41.14 2.12
3691 6063 7.440556 AGCAGAAGTTCATATGCAACTAGTATG 59.559 37.037 15.54 11.92 41.14 2.39
3692 6064 7.439356 GCAGAAGTTCATATGCAACTAGTATGA 59.561 37.037 16.08 0.00 38.54 2.15
3694 6066 9.890629 AGAAGTTCATATGCAACTAGTATGAAA 57.109 29.630 17.16 4.18 42.89 2.69
3744 6116 8.919145 AGAGGTACAAGATAAACATCTTAGGAG 58.081 37.037 0.00 0.00 38.73 3.69
3753 6125 8.270744 AGATAAACATCTTAGGAGACAAGCAAT 58.729 33.333 0.00 0.00 33.99 3.56
3772 6144 4.872691 GCAATGTCAACTGCTCTACTACAT 59.127 41.667 3.59 0.00 35.62 2.29
3799 6179 6.992123 TGCTAGGGTTACAATTATCACATCTG 59.008 38.462 0.00 0.00 0.00 2.90
3802 6182 6.595682 AGGGTTACAATTATCACATCTGGAG 58.404 40.000 0.00 0.00 0.00 3.86
3824 6204 4.716943 GCACAAGCTTTCACATCTAGAAC 58.283 43.478 0.00 0.00 37.91 3.01
3825 6205 4.214119 GCACAAGCTTTCACATCTAGAACA 59.786 41.667 0.00 0.00 37.91 3.18
3826 6206 5.683859 CACAAGCTTTCACATCTAGAACAC 58.316 41.667 0.00 0.00 0.00 3.32
3827 6207 5.237127 CACAAGCTTTCACATCTAGAACACA 59.763 40.000 0.00 0.00 0.00 3.72
3828 6208 5.822519 ACAAGCTTTCACATCTAGAACACAA 59.177 36.000 0.00 0.00 0.00 3.33
3829 6209 6.017605 ACAAGCTTTCACATCTAGAACACAAG 60.018 38.462 0.00 0.00 0.00 3.16
3830 6210 4.999950 AGCTTTCACATCTAGAACACAAGG 59.000 41.667 0.00 0.00 0.00 3.61
3831 6211 4.378874 GCTTTCACATCTAGAACACAAGGC 60.379 45.833 0.00 0.00 0.00 4.35
3832 6212 4.623932 TTCACATCTAGAACACAAGGCT 57.376 40.909 0.00 0.00 0.00 4.58
3833 6213 4.623932 TCACATCTAGAACACAAGGCTT 57.376 40.909 0.00 0.00 0.00 4.35
3834 6214 5.738619 TCACATCTAGAACACAAGGCTTA 57.261 39.130 0.00 0.00 0.00 3.09
3835 6215 5.479306 TCACATCTAGAACACAAGGCTTAC 58.521 41.667 0.00 0.00 0.00 2.34
3836 6216 5.011635 TCACATCTAGAACACAAGGCTTACA 59.988 40.000 0.00 0.00 0.00 2.41
3837 6217 5.120830 CACATCTAGAACACAAGGCTTACAC 59.879 44.000 0.00 0.00 0.00 2.90
3838 6218 4.267349 TCTAGAACACAAGGCTTACACC 57.733 45.455 0.00 0.00 0.00 4.16
3839 6219 3.901844 TCTAGAACACAAGGCTTACACCT 59.098 43.478 0.00 0.00 43.91 4.00
3840 6220 5.081728 TCTAGAACACAAGGCTTACACCTA 58.918 41.667 0.00 0.00 39.93 3.08
3851 6231 3.055385 GGCTTACACCTACTTGTGGATGA 60.055 47.826 0.00 0.00 40.62 2.92
3857 6237 5.548406 ACACCTACTTGTGGATGAAGTTAC 58.452 41.667 0.00 0.00 40.62 2.50
3878 6258 4.666512 ACAAGATTGTTGCTCCTAACCAT 58.333 39.130 0.00 0.00 38.47 3.55
3925 6305 1.000060 AGCAGCACGAACATTGCAAAT 60.000 42.857 1.71 0.00 42.83 2.32
3926 6306 1.125384 GCAGCACGAACATTGCAAATG 59.875 47.619 1.71 5.27 42.83 2.32
3934 6314 2.068837 ACATTGCAAATGCCTTCACG 57.931 45.000 1.71 0.00 41.18 4.35
3981 6361 4.615588 AATTATCTGTAGGAGCAGGAGC 57.384 45.455 0.00 0.00 42.56 4.70
3982 6362 2.755952 TATCTGTAGGAGCAGGAGCA 57.244 50.000 0.00 0.00 45.49 4.26
3984 6364 0.898320 TCTGTAGGAGCAGGAGCAAC 59.102 55.000 0.00 0.00 45.49 4.17
3999 6379 0.615850 GCAACTTCTAGCTGGGGAGT 59.384 55.000 0.00 0.00 0.00 3.85
4000 6380 1.003696 GCAACTTCTAGCTGGGGAGTT 59.996 52.381 11.89 11.89 0.00 3.01
4001 6381 2.553247 GCAACTTCTAGCTGGGGAGTTT 60.553 50.000 14.06 2.19 0.00 2.66
4011 6391 0.396417 TGGGGAGTTTGGTGTTGTGG 60.396 55.000 0.00 0.00 0.00 4.17
4015 6395 1.102978 GAGTTTGGTGTTGTGGCACT 58.897 50.000 19.83 0.00 39.21 4.40
4016 6396 0.817013 AGTTTGGTGTTGTGGCACTG 59.183 50.000 19.83 0.00 39.21 3.66
4033 6413 2.503375 GCACTTGCTGCATCACGC 60.503 61.111 1.84 0.32 46.29 5.34
4043 6423 1.423056 GCATCACGCAACTCTGAGC 59.577 57.895 4.19 0.00 41.79 4.26
4057 6437 4.207165 ACTCTGAGCTGATCCTCTCTAAC 58.793 47.826 4.19 0.00 33.02 2.34
4074 6454 4.662961 CTGACGCACCCTGTCGCA 62.663 66.667 0.00 0.00 39.22 5.10
4082 6462 0.179116 CACCCTGTCGCAGAGATCAG 60.179 60.000 8.20 0.00 36.95 2.90
4102 6482 5.624159 TCAGTGATGAGTTGTTTGAGGAAT 58.376 37.500 0.00 0.00 0.00 3.01
4105 6485 4.520492 GTGATGAGTTGTTTGAGGAATGGT 59.480 41.667 0.00 0.00 0.00 3.55
4130 6510 3.726004 TGGGATCGTCATGCCACT 58.274 55.556 0.00 0.00 45.25 4.00
4144 6524 2.839975 TGCCACTCGTACATTTCACAA 58.160 42.857 0.00 0.00 0.00 3.33
4150 6530 3.000727 CTCGTACATTTCACAACCTCCC 58.999 50.000 0.00 0.00 0.00 4.30
4151 6531 2.369203 TCGTACATTTCACAACCTCCCA 59.631 45.455 0.00 0.00 0.00 4.37
4175 6555 1.757682 ACGGGAGTTGAGCACAAAAA 58.242 45.000 0.00 0.00 43.33 1.94
4194 6574 4.937201 AAAAATGTCAGTGGGGAAGAAC 57.063 40.909 0.00 0.00 0.00 3.01
4198 6578 1.142870 TGTCAGTGGGGAAGAACCAAG 59.857 52.381 0.00 0.00 40.24 3.61
4199 6579 1.420138 GTCAGTGGGGAAGAACCAAGA 59.580 52.381 0.00 0.00 40.24 3.02
4209 6589 3.192212 GGAAGAACCAAGAATCAGCCAAG 59.808 47.826 0.00 0.00 38.79 3.61
4211 6591 1.203287 GAACCAAGAATCAGCCAAGGC 59.797 52.381 2.02 2.02 42.33 4.35
4212 6592 0.112995 ACCAAGAATCAGCCAAGGCA 59.887 50.000 14.40 0.00 44.88 4.75
4213 6593 0.815734 CCAAGAATCAGCCAAGGCAG 59.184 55.000 14.40 5.39 44.88 4.85
4214 6594 0.172803 CAAGAATCAGCCAAGGCAGC 59.827 55.000 14.40 0.00 44.88 5.25
4215 6595 0.251474 AAGAATCAGCCAAGGCAGCA 60.251 50.000 14.40 0.00 44.88 4.41
4216 6596 0.251474 AGAATCAGCCAAGGCAGCAA 60.251 50.000 14.40 0.00 44.88 3.91
4217 6597 0.108945 GAATCAGCCAAGGCAGCAAC 60.109 55.000 14.40 0.00 44.88 4.17
4218 6598 1.538687 AATCAGCCAAGGCAGCAACC 61.539 55.000 14.40 0.00 44.88 3.77
4219 6599 2.718487 ATCAGCCAAGGCAGCAACCA 62.718 55.000 14.40 0.00 44.88 3.67
4220 6600 2.123338 AGCCAAGGCAGCAACCAA 60.123 55.556 14.40 0.00 44.88 3.67
4221 6601 1.761667 AGCCAAGGCAGCAACCAAA 60.762 52.632 14.40 0.00 44.88 3.28
4222 6602 1.145819 GCCAAGGCAGCAACCAAAA 59.854 52.632 6.14 0.00 41.49 2.44
4223 6603 0.463474 GCCAAGGCAGCAACCAAAAA 60.463 50.000 6.14 0.00 41.49 1.94
4224 6604 1.298602 CCAAGGCAGCAACCAAAAAC 58.701 50.000 0.00 0.00 0.00 2.43
4225 6605 0.929615 CAAGGCAGCAACCAAAAACG 59.070 50.000 0.00 0.00 0.00 3.60
4226 6606 0.820871 AAGGCAGCAACCAAAAACGA 59.179 45.000 0.00 0.00 0.00 3.85
4227 6607 0.102300 AGGCAGCAACCAAAAACGAC 59.898 50.000 0.00 0.00 0.00 4.34
4228 6608 0.179124 GGCAGCAACCAAAAACGACA 60.179 50.000 0.00 0.00 0.00 4.35
4229 6609 1.634702 GCAGCAACCAAAAACGACAA 58.365 45.000 0.00 0.00 0.00 3.18
4230 6610 2.200899 GCAGCAACCAAAAACGACAAT 58.799 42.857 0.00 0.00 0.00 2.71
4231 6611 2.607180 GCAGCAACCAAAAACGACAATT 59.393 40.909 0.00 0.00 0.00 2.32
4232 6612 3.799420 GCAGCAACCAAAAACGACAATTA 59.201 39.130 0.00 0.00 0.00 1.40
4233 6613 4.447389 GCAGCAACCAAAAACGACAATTAT 59.553 37.500 0.00 0.00 0.00 1.28
4234 6614 5.388371 GCAGCAACCAAAAACGACAATTATC 60.388 40.000 0.00 0.00 0.00 1.75
4276 6656 2.541762 GGCGCATGTCTTGTATCTTCTC 59.458 50.000 10.83 0.00 0.00 2.87
4312 6692 0.621280 TCCAGGAGATCCACATGGCA 60.621 55.000 13.89 0.00 38.89 4.92
4322 6702 1.909781 CACATGGCAGCCTTGGGTT 60.910 57.895 26.80 7.56 33.63 4.11
4354 6734 2.741985 CATGGCGTCGCAGGTTCA 60.742 61.111 20.50 7.60 0.00 3.18
4360 6740 1.146358 GCGTCGCAGGTTCATAGTCC 61.146 60.000 13.44 0.00 0.00 3.85
4363 6743 1.204941 GTCGCAGGTTCATAGTCCAGT 59.795 52.381 0.00 0.00 0.00 4.00
4380 6760 3.007581 GTGGACCCACCCTGTATCT 57.992 57.895 7.95 0.00 40.79 1.98
4402 6782 4.785453 GGCGACCTGCTTGGGGAG 62.785 72.222 0.00 0.00 45.43 4.30
4430 6810 2.016096 GCCTCTGGGATGAAGAAGCAC 61.016 57.143 0.00 0.00 32.42 4.40
4462 6842 5.201713 TCGAAGAGACTGACAAAGACATT 57.798 39.130 0.00 0.00 0.00 2.71
4474 6854 3.230134 CAAAGACATTTGTTGGGGAGGA 58.770 45.455 0.00 0.00 40.81 3.71
4489 6869 0.743097 GAGGATTTGATGCTGGTGGC 59.257 55.000 0.00 0.00 42.22 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
209 210 6.183360 ACCGATCCAACTTTTAGCAAAGAAAA 60.183 34.615 3.70 0.00 41.97 2.29
314 316 5.221067 CGCTGTACTTAAGGCTGATCTTCTA 60.221 44.000 7.53 0.00 0.00 2.10
610 612 7.903995 AACAAAAGCAATTTTGAAAGAGTCA 57.096 28.000 17.66 0.00 42.79 3.41
790 792 3.141398 GTTTCTCTTGGACACATCTGCA 58.859 45.455 0.00 0.00 0.00 4.41
868 870 6.824305 AATGTACTTCATGAAAGACCAAGG 57.176 37.500 9.88 0.00 38.44 3.61
889 892 9.491675 TTCTGAATAATGTGAATGTGCAAAAAT 57.508 25.926 0.00 0.00 0.00 1.82
933 941 6.975772 GTGATACAAACACCAGTAAGCAAAAA 59.024 34.615 0.00 0.00 32.84 1.94
987 996 1.535028 CGCAGCATGTTTAGAACACCA 59.465 47.619 0.00 0.00 45.50 4.17
1038 1047 8.222637 TCCACCATCTTCTTCATCAAATCATAT 58.777 33.333 0.00 0.00 0.00 1.78
1065 1074 5.164002 GGCGCCAACATTAACTGTAATTTTG 60.164 40.000 24.80 0.00 37.23 2.44
1077 1086 1.302383 CTTCACCGGCGCCAACATTA 61.302 55.000 28.98 5.57 0.00 1.90
1089 1098 1.425412 CGTGGTAGGAAACTTCACCG 58.575 55.000 0.00 0.00 41.25 4.94
1121 1135 1.760527 CATGTGTGTGGGGGAGTGA 59.239 57.895 0.00 0.00 0.00 3.41
1125 1139 0.774276 TTTAGCATGTGTGTGGGGGA 59.226 50.000 0.00 0.00 0.00 4.81
1137 1152 9.123902 TGTGCAGACTGAAAATATATTTAGCAT 57.876 29.630 11.07 0.00 0.00 3.79
1160 1441 6.981559 TCATGGATGACAAATAATTGCATGTG 59.018 34.615 6.04 0.00 40.34 3.21
1232 1513 5.126067 GGAAGCCAATAAGATTGCTCACTA 58.874 41.667 0.00 0.00 32.62 2.74
1245 1526 5.253096 AGTTTCCTTAGAAGGGAAGCCAATA 59.747 40.000 8.46 0.00 44.30 1.90
1278 1559 1.134694 CGCCGGCTTTGCTACTTTC 59.865 57.895 26.68 0.00 0.00 2.62
1356 1644 2.438868 AATTTGAAAACTCCTGCGGC 57.561 45.000 0.00 0.00 0.00 6.53
1389 1677 4.324267 AGTGACTTACAATGCTTGGGTAC 58.676 43.478 1.84 0.00 34.12 3.34
1413 1701 8.506437 TGTGTGAATGCTTTCTTAACTGAATAG 58.494 33.333 12.96 0.00 32.78 1.73
1428 1716 4.852134 TGCTACAAAATGTGTGAATGCT 57.148 36.364 0.00 0.00 41.89 3.79
1436 1724 6.142798 GTGACAAGTTGATGCTACAAAATGTG 59.857 38.462 10.54 7.28 33.88 3.21
1444 1732 2.084546 GGGGTGACAAGTTGATGCTAC 58.915 52.381 10.54 1.09 0.00 3.58
1453 1744 1.194781 AGATGCGAGGGGTGACAAGT 61.195 55.000 0.00 0.00 0.00 3.16
1459 1750 1.146263 GGGTTAGATGCGAGGGGTG 59.854 63.158 0.00 0.00 0.00 4.61
1460 1751 2.070650 GGGGTTAGATGCGAGGGGT 61.071 63.158 0.00 0.00 0.00 4.95
1488 1779 6.419413 GCTTCTCTGCTGACTATATGTTACAC 59.581 42.308 0.00 0.00 0.00 2.90
1494 1785 4.989797 CCAAGCTTCTCTGCTGACTATATG 59.010 45.833 0.00 0.00 43.24 1.78
1495 1786 4.653341 ACCAAGCTTCTCTGCTGACTATAT 59.347 41.667 0.00 0.00 43.24 0.86
1496 1787 4.026744 ACCAAGCTTCTCTGCTGACTATA 58.973 43.478 0.00 0.00 43.24 1.31
1556 1848 4.201851 ACACTTGACGCATTTCTGATATGC 60.202 41.667 19.15 19.15 43.80 3.14
1577 1869 7.721842 TGAAAGTAAACATATTGGACTGGAACA 59.278 33.333 0.00 0.00 0.00 3.18
1710 2002 1.003118 TGGTGAGTTGGTACATGAGGC 59.997 52.381 0.00 0.00 39.30 4.70
1720 2012 4.794003 GCTGAATTGAGTTTGGTGAGTTGG 60.794 45.833 0.00 0.00 0.00 3.77
1725 2017 2.622942 GGTGCTGAATTGAGTTTGGTGA 59.377 45.455 0.00 0.00 0.00 4.02
1726 2018 2.288395 GGGTGCTGAATTGAGTTTGGTG 60.288 50.000 0.00 0.00 0.00 4.17
1728 2020 1.273327 GGGGTGCTGAATTGAGTTTGG 59.727 52.381 0.00 0.00 0.00 3.28
1764 2056 0.966370 GTGCTGGTAGTCGAGGACCT 60.966 60.000 15.00 0.00 35.47 3.85
1767 2059 0.965866 CTGGTGCTGGTAGTCGAGGA 60.966 60.000 0.00 0.00 0.00 3.71
1770 2062 2.646175 GCCTGGTGCTGGTAGTCGA 61.646 63.158 0.00 0.00 36.87 4.20
1796 2088 3.220110 AGCATGATGGATTGCTTACCTG 58.780 45.455 0.00 0.00 46.71 4.00
1803 2095 3.698029 AACGTAAGCATGATGGATTGC 57.302 42.857 0.00 0.00 45.62 3.56
1824 2116 9.800433 ATCGTTTATATGCATTTCAATGTTGAA 57.200 25.926 3.54 4.16 44.78 2.69
1851 2143 7.014711 GGAGAATGAGTAGTGTGAGATTGGATA 59.985 40.741 0.00 0.00 0.00 2.59
1861 2167 3.866651 CCAAGGGAGAATGAGTAGTGTG 58.133 50.000 0.00 0.00 0.00 3.82
1893 2201 0.532862 CCGCGGAACTATTGGCAGAT 60.533 55.000 24.07 0.00 0.00 2.90
1910 2218 0.837272 TCCATCCCTTTTCCTAGCCG 59.163 55.000 0.00 0.00 0.00 5.52
1912 2220 3.653835 ACTTCCATCCCTTTTCCTAGC 57.346 47.619 0.00 0.00 0.00 3.42
1929 2237 5.288712 CGACTGTACGCTTGATGATAAACTT 59.711 40.000 0.00 0.00 0.00 2.66
1984 2292 3.567797 GGCGAGGACATTCTGCGC 61.568 66.667 0.00 0.00 46.20 6.09
1991 2299 2.742372 GTGTTGCGGCGAGGACAT 60.742 61.111 12.98 0.00 0.00 3.06
2034 2342 2.961510 TCCTGGGATATGGCAATTTGG 58.038 47.619 0.00 0.00 0.00 3.28
2041 2349 1.542492 CTTGCATCCTGGGATATGGC 58.458 55.000 1.42 3.04 32.93 4.40
2060 2368 2.690786 TGCTTGCAATTTCATTGAGGC 58.309 42.857 0.00 0.00 42.83 4.70
2062 2370 5.004440 CGATCTTGCTTGCAATTTCATTGAG 59.996 40.000 8.55 0.00 42.83 3.02
2067 2375 3.921119 ACGATCTTGCTTGCAATTTCA 57.079 38.095 8.55 0.00 0.00 2.69
2085 3772 1.458064 AGGTCGTCGTAAAATGCAACG 59.542 47.619 2.24 2.24 40.40 4.10
2100 3787 1.066143 ACCAAGATGGCTGTAAGGTCG 60.066 52.381 0.00 0.00 42.67 4.79
2217 3905 1.702957 ACCCACGGATCTCTTCCAAAA 59.297 47.619 0.00 0.00 45.78 2.44
2350 4328 9.897744 CTTGTGAGCATTCAGTAAAATCTTTAA 57.102 29.630 0.00 0.00 32.98 1.52
2385 4363 8.485976 AAGATGCAGTTACTAAATGAGAAGAC 57.514 34.615 0.38 0.00 0.00 3.01
2411 4389 1.097232 CCTGCAGCGATTTGATTGGA 58.903 50.000 8.66 0.00 0.00 3.53
2421 4399 0.252761 TGATCCATTTCCTGCAGCGA 59.747 50.000 8.66 4.33 0.00 4.93
2440 4418 3.700538 TGAGTTTTGGCTTAGGATGCAT 58.299 40.909 0.00 0.00 0.00 3.96
2456 4434 3.669949 ACCCCCTCTAATGCTATGAGTT 58.330 45.455 0.00 0.00 0.00 3.01
2464 4442 2.959030 GGATTTCAACCCCCTCTAATGC 59.041 50.000 0.00 0.00 0.00 3.56
2487 4465 3.021269 TCGTTAGATGCAAGTTGACGT 57.979 42.857 7.16 0.00 0.00 4.34
2531 4509 0.679960 AAGCCCGCGGAAAATAGCTT 60.680 50.000 30.73 27.32 35.82 3.74
2556 4534 6.136743 GTCCTTTGAGAAAAACGAGTCAATC 58.863 40.000 0.00 0.00 0.00 2.67
2562 4540 4.024809 GGAGTGTCCTTTGAGAAAAACGAG 60.025 45.833 0.00 0.00 32.53 4.18
2564 4542 3.877508 AGGAGTGTCCTTTGAGAAAAACG 59.122 43.478 0.00 0.00 46.91 3.60
2608 4586 0.320247 ACAGCAAAGTCAGGCTCGAG 60.320 55.000 8.45 8.45 38.56 4.04
2616 4594 4.713553 TGGAAATACTCACAGCAAAGTCA 58.286 39.130 0.00 0.00 0.00 3.41
2632 4610 1.681229 TAAGGGGAGGTGCTGGAAAT 58.319 50.000 0.00 0.00 0.00 2.17
2644 4622 2.680439 AGGGTGGAGAATTAAGGGGA 57.320 50.000 0.00 0.00 0.00 4.81
2656 4661 3.394274 TCATCAAGACAGAAAAGGGTGGA 59.606 43.478 0.00 0.00 0.00 4.02
2737 5048 4.030913 AGCTAGCCCTAATTGAGTGTACA 58.969 43.478 12.13 0.00 0.00 2.90
2743 5054 3.845781 TGGAAGCTAGCCCTAATTGAG 57.154 47.619 12.13 0.00 0.00 3.02
2811 5122 7.510549 AAATTGACACTAGCTCTGCTAAAAA 57.489 32.000 0.00 0.00 40.82 1.94
2817 5150 5.120208 TCGTAAAAATTGACACTAGCTCTGC 59.880 40.000 0.00 0.00 0.00 4.26
2822 5155 5.353123 TGGGATCGTAAAAATTGACACTAGC 59.647 40.000 0.00 0.00 0.00 3.42
2830 5163 6.072728 TCAGTGAGTTGGGATCGTAAAAATTG 60.073 38.462 0.00 0.00 0.00 2.32
2831 5164 6.001460 TCAGTGAGTTGGGATCGTAAAAATT 58.999 36.000 0.00 0.00 0.00 1.82
2833 5166 4.963373 TCAGTGAGTTGGGATCGTAAAAA 58.037 39.130 0.00 0.00 0.00 1.94
2843 5176 4.630644 ATAGGCATATCAGTGAGTTGGG 57.369 45.455 0.00 0.00 0.00 4.12
2865 5198 4.021368 GTCGGGAAGTACCACTGCATATAT 60.021 45.833 0.00 0.00 41.20 0.86
2881 5214 2.715749 TCAGGTAGTATCGTCGGGAA 57.284 50.000 0.00 0.00 0.00 3.97
2902 5235 8.785946 CATATCAAATGCATATACAGTCCAACA 58.214 33.333 0.00 0.00 0.00 3.33
2970 5303 2.151202 CGCCGATTGCTATACCCAAAT 58.849 47.619 0.00 0.00 38.05 2.32
2988 5321 0.661552 ATTCATGCATGCTGACTCGC 59.338 50.000 22.25 0.00 0.00 5.03
3024 5357 2.800746 GTGAACAACGCGGCATGC 60.801 61.111 12.47 9.90 41.47 4.06
3057 5390 2.585330 TCACAATGCCAAGAGCTGAAA 58.415 42.857 0.00 0.00 44.23 2.69
3098 5431 7.177568 TGTTTTCCCTCATTATGATCCGAAAAA 59.822 33.333 17.66 9.53 31.99 1.94
3104 5437 7.503566 TCTCAATGTTTTCCCTCATTATGATCC 59.496 37.037 0.00 0.00 33.69 3.36
3123 5456 6.072838 ACAGTCAAAGTGCATACTTCTCAATG 60.073 38.462 0.00 0.00 46.14 2.82
3138 5471 0.106149 GGGTGGTCGACAGTCAAAGT 59.894 55.000 18.91 0.00 0.00 2.66
3139 5472 0.944311 CGGGTGGTCGACAGTCAAAG 60.944 60.000 18.91 0.00 0.00 2.77
3142 5475 2.203379 TCGGGTGGTCGACAGTCA 60.203 61.111 18.91 3.10 33.92 3.41
3201 5535 5.941788 AGGGACGAAGAAGCCAATAATAAT 58.058 37.500 0.00 0.00 0.00 1.28
3202 5536 5.365619 GAGGGACGAAGAAGCCAATAATAA 58.634 41.667 0.00 0.00 0.00 1.40
3204 5538 3.433740 GGAGGGACGAAGAAGCCAATAAT 60.434 47.826 0.00 0.00 0.00 1.28
3205 5539 2.093128 GGAGGGACGAAGAAGCCAATAA 60.093 50.000 0.00 0.00 0.00 1.40
3206 5540 1.485066 GGAGGGACGAAGAAGCCAATA 59.515 52.381 0.00 0.00 0.00 1.90
3215 5549 0.322456 TGCATTTGGGAGGGACGAAG 60.322 55.000 0.00 0.00 0.00 3.79
3218 5552 0.745845 CTCTGCATTTGGGAGGGACG 60.746 60.000 0.00 0.00 37.72 4.79
3220 5554 0.914644 CTCTCTGCATTTGGGAGGGA 59.085 55.000 0.00 0.00 42.93 4.20
3263 5598 3.733380 CGCCGTCATAATTCCATGCAAAA 60.733 43.478 0.00 0.00 0.00 2.44
3278 5613 0.669619 TCTACAGTTTGTCGCCGTCA 59.330 50.000 0.00 0.00 0.00 4.35
3290 5625 4.142227 ACTTTGTTCAGTCGTGTCTACAGT 60.142 41.667 0.00 0.00 0.00 3.55
3293 5628 5.919141 ACATACTTTGTTCAGTCGTGTCTAC 59.081 40.000 0.00 0.00 33.74 2.59
3294 5629 6.080648 ACATACTTTGTTCAGTCGTGTCTA 57.919 37.500 0.00 0.00 33.74 2.59
3320 5655 6.990349 AGTTTCCATACGGTATGACCAATTAG 59.010 38.462 25.74 9.40 38.47 1.73
3323 5659 5.123227 CAGTTTCCATACGGTATGACCAAT 58.877 41.667 25.74 8.22 38.47 3.16
3324 5660 4.509616 CAGTTTCCATACGGTATGACCAA 58.490 43.478 25.74 13.96 38.47 3.67
3325 5661 3.680475 GCAGTTTCCATACGGTATGACCA 60.680 47.826 25.74 9.37 38.47 4.02
3326 5662 2.870411 GCAGTTTCCATACGGTATGACC 59.130 50.000 25.74 12.08 38.45 4.02
3327 5663 3.527533 TGCAGTTTCCATACGGTATGAC 58.472 45.455 25.74 16.99 38.45 3.06
3335 5673 3.855689 ACAAGCATGCAGTTTCCATAC 57.144 42.857 21.98 0.00 0.00 2.39
3336 5674 4.870123 AAACAAGCATGCAGTTTCCATA 57.130 36.364 26.05 0.00 30.19 2.74
3368 5707 2.182827 CTGGAGGAAGAGATGGTGTGA 58.817 52.381 0.00 0.00 0.00 3.58
3382 5721 4.803426 GCGAGCGTGTCCTGGAGG 62.803 72.222 0.00 0.00 0.00 4.30
3385 5724 2.887568 GATGCGAGCGTGTCCTGG 60.888 66.667 0.00 0.00 0.00 4.45
3397 5736 1.292992 TCAAGCTGCTATGTGATGCG 58.707 50.000 0.90 0.00 0.00 4.73
3406 5745 4.339530 AGTTCGTAGATCATCAAGCTGCTA 59.660 41.667 0.90 0.00 35.04 3.49
3413 5752 7.582667 TCCTCATTAGTTCGTAGATCATCAA 57.417 36.000 0.00 0.00 35.04 2.57
3481 5820 3.411446 AGCAATGAACGATCCTTTGACA 58.589 40.909 8.89 0.00 0.00 3.58
3489 5828 8.017946 AGTTTTTCTAAAGAGCAATGAACGATC 58.982 33.333 0.00 0.00 0.00 3.69
3511 5850 5.066893 GGGACGTTCAAAGAAAGGTAAGTTT 59.933 40.000 0.00 0.00 0.00 2.66
3513 5852 4.132336 GGGACGTTCAAAGAAAGGTAAGT 58.868 43.478 0.00 0.00 0.00 2.24
3515 5854 4.426736 AGGGACGTTCAAAGAAAGGTAA 57.573 40.909 0.00 0.00 0.00 2.85
3517 5856 4.132336 GTTAGGGACGTTCAAAGAAAGGT 58.868 43.478 0.00 0.00 0.00 3.50
3518 5857 4.386711 AGTTAGGGACGTTCAAAGAAAGG 58.613 43.478 0.00 0.00 0.00 3.11
3519 5858 7.360946 CCAATAGTTAGGGACGTTCAAAGAAAG 60.361 40.741 0.00 0.00 0.00 2.62
3520 5859 6.428771 CCAATAGTTAGGGACGTTCAAAGAAA 59.571 38.462 0.00 0.00 0.00 2.52
3521 5860 5.935789 CCAATAGTTAGGGACGTTCAAAGAA 59.064 40.000 0.00 0.00 0.00 2.52
3522 5861 5.246656 TCCAATAGTTAGGGACGTTCAAAGA 59.753 40.000 0.00 0.00 0.00 2.52
3523 5862 5.484715 TCCAATAGTTAGGGACGTTCAAAG 58.515 41.667 0.00 0.00 0.00 2.77
3524 5863 5.486735 TCCAATAGTTAGGGACGTTCAAA 57.513 39.130 0.00 0.00 0.00 2.69
3525 5864 5.486735 TTCCAATAGTTAGGGACGTTCAA 57.513 39.130 0.00 0.00 0.00 2.69
3526 5865 5.486735 TTTCCAATAGTTAGGGACGTTCA 57.513 39.130 0.00 0.00 0.00 3.18
3527 5866 6.348786 GGTTTTTCCAATAGTTAGGGACGTTC 60.349 42.308 0.00 0.00 35.97 3.95
3528 5867 5.474532 GGTTTTTCCAATAGTTAGGGACGTT 59.525 40.000 0.00 0.00 35.97 3.99
3529 5868 5.005740 GGTTTTTCCAATAGTTAGGGACGT 58.994 41.667 0.00 0.00 35.97 4.34
3530 5869 5.250982 AGGTTTTTCCAATAGTTAGGGACG 58.749 41.667 0.00 0.00 39.02 4.79
3531 5870 6.482524 AGAGGTTTTTCCAATAGTTAGGGAC 58.517 40.000 0.00 0.00 39.02 4.46
3532 5871 6.504279 AGAGAGGTTTTTCCAATAGTTAGGGA 59.496 38.462 0.00 0.00 39.02 4.20
3533 5872 6.722328 AGAGAGGTTTTTCCAATAGTTAGGG 58.278 40.000 0.00 0.00 39.02 3.53
3534 5873 9.549078 GATAGAGAGGTTTTTCCAATAGTTAGG 57.451 37.037 0.00 0.00 39.02 2.69
3542 5897 5.843019 ACCAGATAGAGAGGTTTTTCCAA 57.157 39.130 0.00 0.00 39.02 3.53
3543 5898 5.843019 AACCAGATAGAGAGGTTTTTCCA 57.157 39.130 0.00 0.00 42.72 3.53
3550 5905 6.681729 TTGTTACAAACCAGATAGAGAGGT 57.318 37.500 0.00 0.00 37.20 3.85
3551 5906 7.331026 TGATTGTTACAAACCAGATAGAGAGG 58.669 38.462 0.66 0.00 0.00 3.69
3554 5909 8.553459 AACTGATTGTTACAAACCAGATAGAG 57.447 34.615 25.86 10.01 37.07 2.43
3557 5913 8.598916 TCCTAACTGATTGTTACAAACCAGATA 58.401 33.333 25.86 20.01 39.89 1.98
3559 5915 6.833041 TCCTAACTGATTGTTACAAACCAGA 58.167 36.000 25.86 11.92 39.89 3.86
3564 5920 7.996644 AGGTCTTTCCTAACTGATTGTTACAAA 59.003 33.333 0.66 0.00 46.10 2.83
3570 5926 4.597507 TCCAGGTCTTTCCTAACTGATTGT 59.402 41.667 0.00 0.00 46.24 2.71
3571 5927 4.938226 GTCCAGGTCTTTCCTAACTGATTG 59.062 45.833 0.00 0.00 46.24 2.67
3573 5929 3.519913 GGTCCAGGTCTTTCCTAACTGAT 59.480 47.826 0.00 0.00 46.24 2.90
3574 5930 2.904434 GGTCCAGGTCTTTCCTAACTGA 59.096 50.000 0.00 0.00 46.24 3.41
3575 5931 2.637872 TGGTCCAGGTCTTTCCTAACTG 59.362 50.000 0.00 0.00 46.24 3.16
3576 5932 2.986050 TGGTCCAGGTCTTTCCTAACT 58.014 47.619 0.00 0.00 46.24 2.24
3577 5933 3.782656 TTGGTCCAGGTCTTTCCTAAC 57.217 47.619 0.00 0.00 46.24 2.34
3578 5934 4.167307 AGTTTTGGTCCAGGTCTTTCCTAA 59.833 41.667 0.00 0.00 46.24 2.69
3579 5935 3.720002 AGTTTTGGTCCAGGTCTTTCCTA 59.280 43.478 0.00 0.00 46.24 2.94
3582 5938 5.070685 ACATAGTTTTGGTCCAGGTCTTTC 58.929 41.667 0.00 0.00 0.00 2.62
3583 5939 5.061721 ACATAGTTTTGGTCCAGGTCTTT 57.938 39.130 0.00 0.00 0.00 2.52
3584 5940 4.351111 AGACATAGTTTTGGTCCAGGTCTT 59.649 41.667 0.00 0.00 29.46 3.01
3586 5942 4.003648 CAGACATAGTTTTGGTCCAGGTC 58.996 47.826 0.00 0.00 31.99 3.85
3593 5965 7.556844 AGTCGATAATCAGACATAGTTTTGGT 58.443 34.615 0.00 0.00 39.67 3.67
3610 5982 9.803507 TCTAATACAATAAGAGGGAGTCGATAA 57.196 33.333 0.00 0.00 0.00 1.75
3611 5983 9.976776 ATCTAATACAATAAGAGGGAGTCGATA 57.023 33.333 0.00 0.00 0.00 2.92
3616 5988 6.493802 TCGCATCTAATACAATAAGAGGGAGT 59.506 38.462 0.00 0.00 0.00 3.85
3617 5989 6.925211 TCGCATCTAATACAATAAGAGGGAG 58.075 40.000 0.00 0.00 0.00 4.30
3629 6001 9.322776 CATGCTAAAAAGATTCGCATCTAATAC 57.677 33.333 0.00 0.00 39.00 1.89
3630 6002 8.506437 CCATGCTAAAAAGATTCGCATCTAATA 58.494 33.333 0.00 0.00 39.00 0.98
3631 6003 7.365741 CCATGCTAAAAAGATTCGCATCTAAT 58.634 34.615 0.00 0.00 39.00 1.73
3632 6004 6.728200 CCATGCTAAAAAGATTCGCATCTAA 58.272 36.000 0.00 0.00 39.00 2.10
3634 6006 4.498682 GCCATGCTAAAAAGATTCGCATCT 60.499 41.667 0.00 0.00 42.05 2.90
3637 6009 2.754552 AGCCATGCTAAAAAGATTCGCA 59.245 40.909 0.00 0.00 36.99 5.10
3638 6010 3.111098 CAGCCATGCTAAAAAGATTCGC 58.889 45.455 0.00 0.00 36.40 4.70
3639 6011 3.129287 ACCAGCCATGCTAAAAAGATTCG 59.871 43.478 0.00 0.00 36.40 3.34
3640 6012 4.725790 ACCAGCCATGCTAAAAAGATTC 57.274 40.909 0.00 0.00 36.40 2.52
3643 6015 4.568072 TCTACCAGCCATGCTAAAAAGA 57.432 40.909 0.00 0.00 36.40 2.52
3644 6016 4.439289 GCTTCTACCAGCCATGCTAAAAAG 60.439 45.833 0.00 0.00 36.40 2.27
3648 6020 1.559219 TGCTTCTACCAGCCATGCTAA 59.441 47.619 0.00 0.00 39.25 3.09
3655 6027 2.289694 TGAACTTCTGCTTCTACCAGCC 60.290 50.000 0.00 0.00 39.25 4.85
3656 6028 3.045601 TGAACTTCTGCTTCTACCAGC 57.954 47.619 0.00 0.00 40.55 4.85
3666 6038 7.439356 TCATACTAGTTGCATATGAACTTCTGC 59.561 37.037 19.07 0.78 35.30 4.26
3668 6040 9.890629 TTTCATACTAGTTGCATATGAACTTCT 57.109 29.630 15.82 6.65 42.27 2.85
3729 6101 7.831193 ACATTGCTTGTCTCCTAAGATGTTTAT 59.169 33.333 0.00 0.00 30.89 1.40
3731 6103 6.006449 ACATTGCTTGTCTCCTAAGATGTTT 58.994 36.000 0.00 0.00 30.89 2.83
3749 6121 4.245660 TGTAGTAGAGCAGTTGACATTGC 58.754 43.478 4.70 4.70 40.57 3.56
3753 6125 4.380973 GCAGATGTAGTAGAGCAGTTGACA 60.381 45.833 0.00 0.00 0.00 3.58
3755 6127 4.019858 AGCAGATGTAGTAGAGCAGTTGA 58.980 43.478 0.00 0.00 0.00 3.18
3761 6133 3.492337 ACCCTAGCAGATGTAGTAGAGC 58.508 50.000 0.00 0.00 0.00 4.09
3772 6144 6.553953 TGTGATAATTGTAACCCTAGCAGA 57.446 37.500 0.00 0.00 0.00 4.26
3802 6182 4.214119 TGTTCTAGATGTGAAAGCTTGTGC 59.786 41.667 0.00 0.00 40.05 4.57
3813 6193 5.120830 GTGTAAGCCTTGTGTTCTAGATGTG 59.879 44.000 0.00 0.00 0.00 3.21
3814 6194 5.238583 GTGTAAGCCTTGTGTTCTAGATGT 58.761 41.667 0.00 0.00 0.00 3.06
3815 6195 4.631813 GGTGTAAGCCTTGTGTTCTAGATG 59.368 45.833 0.00 0.00 0.00 2.90
3816 6196 4.532521 AGGTGTAAGCCTTGTGTTCTAGAT 59.467 41.667 0.00 0.00 34.71 1.98
3817 6197 3.901844 AGGTGTAAGCCTTGTGTTCTAGA 59.098 43.478 0.00 0.00 34.71 2.43
3818 6198 4.273148 AGGTGTAAGCCTTGTGTTCTAG 57.727 45.455 0.00 0.00 34.71 2.43
3819 6199 4.836736 AGTAGGTGTAAGCCTTGTGTTCTA 59.163 41.667 0.00 0.00 39.94 2.10
3820 6200 3.646637 AGTAGGTGTAAGCCTTGTGTTCT 59.353 43.478 0.00 0.00 39.94 3.01
3821 6201 4.004196 AGTAGGTGTAAGCCTTGTGTTC 57.996 45.455 0.00 0.00 39.94 3.18
3822 6202 4.134563 CAAGTAGGTGTAAGCCTTGTGTT 58.865 43.478 0.00 0.00 39.94 3.32
3823 6203 3.135895 ACAAGTAGGTGTAAGCCTTGTGT 59.864 43.478 0.00 0.00 42.42 3.72
3824 6204 3.740115 ACAAGTAGGTGTAAGCCTTGTG 58.260 45.455 0.00 0.00 42.42 3.33
3825 6205 3.496160 CCACAAGTAGGTGTAAGCCTTGT 60.496 47.826 0.00 0.00 43.97 3.16
3826 6206 3.074412 CCACAAGTAGGTGTAAGCCTTG 58.926 50.000 0.00 0.00 38.82 3.61
3827 6207 2.976882 TCCACAAGTAGGTGTAAGCCTT 59.023 45.455 0.00 0.00 39.94 4.35
3828 6208 2.616524 TCCACAAGTAGGTGTAAGCCT 58.383 47.619 0.00 0.00 42.43 4.58
3829 6209 3.055385 TCATCCACAAGTAGGTGTAAGCC 60.055 47.826 0.00 0.00 37.06 4.35
3830 6210 4.202245 TCATCCACAAGTAGGTGTAAGC 57.798 45.455 0.00 0.00 37.06 3.09
3831 6211 5.794894 ACTTCATCCACAAGTAGGTGTAAG 58.205 41.667 0.00 0.00 37.06 2.34
3832 6212 5.818678 ACTTCATCCACAAGTAGGTGTAA 57.181 39.130 0.00 0.00 37.06 2.41
3833 6213 5.818678 AACTTCATCCACAAGTAGGTGTA 57.181 39.130 0.00 0.00 37.06 2.90
3834 6214 4.706842 AACTTCATCCACAAGTAGGTGT 57.293 40.909 0.00 0.00 37.06 4.16
3835 6215 5.547465 TGTAACTTCATCCACAAGTAGGTG 58.453 41.667 0.00 0.00 32.71 4.00
3836 6216 5.818678 TGTAACTTCATCCACAAGTAGGT 57.181 39.130 0.00 0.00 32.71 3.08
3837 6217 6.464222 TCTTGTAACTTCATCCACAAGTAGG 58.536 40.000 11.74 0.00 45.15 3.18
3838 6218 8.446273 CAATCTTGTAACTTCATCCACAAGTAG 58.554 37.037 11.74 2.26 45.15 2.57
3839 6219 7.936847 ACAATCTTGTAACTTCATCCACAAGTA 59.063 33.333 11.74 2.09 45.15 2.24
3840 6220 6.772716 ACAATCTTGTAACTTCATCCACAAGT 59.227 34.615 11.74 0.00 45.15 3.16
3851 6231 6.206829 GGTTAGGAGCAACAATCTTGTAACTT 59.793 38.462 0.00 0.00 41.31 2.66
3857 6237 6.115446 TCTATGGTTAGGAGCAACAATCTTG 58.885 40.000 0.00 0.00 36.76 3.02
3878 6258 5.409520 CAGCATTCTGTTACAAGTGCTTCTA 59.590 40.000 13.51 0.00 40.60 2.10
3918 6298 1.068610 GCTACGTGAAGGCATTTGCAA 60.069 47.619 0.00 0.00 44.36 4.08
3926 6306 0.530870 GGATCTGGCTACGTGAAGGC 60.531 60.000 0.00 0.63 42.19 4.35
3934 6314 4.630111 CTCTGAATCAAGGATCTGGCTAC 58.370 47.826 0.00 0.00 0.00 3.58
3981 6361 3.077359 CAAACTCCCCAGCTAGAAGTTG 58.923 50.000 0.00 0.00 0.00 3.16
3982 6362 2.040412 CCAAACTCCCCAGCTAGAAGTT 59.960 50.000 0.00 0.00 0.00 2.66
3984 6364 1.630878 ACCAAACTCCCCAGCTAGAAG 59.369 52.381 0.00 0.00 0.00 2.85
3999 6379 1.253593 TGCAGTGCCACAACACCAAA 61.254 50.000 13.72 0.00 41.67 3.28
4000 6380 1.680314 TGCAGTGCCACAACACCAA 60.680 52.632 13.72 0.00 41.67 3.67
4001 6381 2.044551 TGCAGTGCCACAACACCA 60.045 55.556 13.72 0.00 41.67 4.17
4033 6413 3.025978 AGAGAGGATCAGCTCAGAGTTG 58.974 50.000 7.96 7.96 37.82 3.16
4043 6423 2.685388 TGCGTCAGTTAGAGAGGATCAG 59.315 50.000 0.00 0.00 37.82 2.90
4057 6437 4.662961 TGCGACAGGGTGCGTCAG 62.663 66.667 0.00 0.00 32.72 3.51
4074 6454 6.106648 TCAAACAACTCATCACTGATCTCT 57.893 37.500 0.00 0.00 0.00 3.10
4082 6462 4.520492 ACCATTCCTCAAACAACTCATCAC 59.480 41.667 0.00 0.00 0.00 3.06
4102 6482 1.209504 GACGATCCCATTGAGGAACCA 59.790 52.381 0.00 0.00 40.04 3.67
4105 6485 2.746142 GCATGACGATCCCATTGAGGAA 60.746 50.000 0.00 0.00 40.04 3.36
4114 6494 1.592669 CGAGTGGCATGACGATCCC 60.593 63.158 0.00 0.00 0.00 3.85
4130 6510 2.369203 TGGGAGGTTGTGAAATGTACGA 59.631 45.455 0.00 0.00 0.00 3.43
4150 6530 0.247460 TGCTCAACTCCCGTCAGATG 59.753 55.000 0.00 0.00 0.00 2.90
4151 6531 0.247736 GTGCTCAACTCCCGTCAGAT 59.752 55.000 0.00 0.00 0.00 2.90
4175 6555 2.176798 TGGTTCTTCCCCACTGACATTT 59.823 45.455 0.00 0.00 34.77 2.32
4184 6564 2.555227 GCTGATTCTTGGTTCTTCCCCA 60.555 50.000 0.00 0.00 34.77 4.96
4185 6565 2.095461 GCTGATTCTTGGTTCTTCCCC 58.905 52.381 0.00 0.00 34.77 4.81
4190 6570 2.800250 CCTTGGCTGATTCTTGGTTCT 58.200 47.619 0.00 0.00 0.00 3.01
4194 6574 0.815734 CTGCCTTGGCTGATTCTTGG 59.184 55.000 13.18 0.00 0.00 3.61
4198 6578 0.108945 GTTGCTGCCTTGGCTGATTC 60.109 55.000 20.21 5.45 0.00 2.52
4199 6579 1.538687 GGTTGCTGCCTTGGCTGATT 61.539 55.000 20.21 0.00 0.00 2.57
4209 6589 0.179124 TGTCGTTTTTGGTTGCTGCC 60.179 50.000 0.00 0.00 0.00 4.85
4211 6591 5.689514 TGATAATTGTCGTTTTTGGTTGCTG 59.310 36.000 0.00 0.00 0.00 4.41
4212 6592 5.837437 TGATAATTGTCGTTTTTGGTTGCT 58.163 33.333 0.00 0.00 0.00 3.91
4213 6593 5.118510 CCTGATAATTGTCGTTTTTGGTTGC 59.881 40.000 0.00 0.00 0.00 4.17
4214 6594 6.362283 GTCCTGATAATTGTCGTTTTTGGTTG 59.638 38.462 0.00 0.00 0.00 3.77
4215 6595 6.039941 TGTCCTGATAATTGTCGTTTTTGGTT 59.960 34.615 0.00 0.00 0.00 3.67
4216 6596 5.533154 TGTCCTGATAATTGTCGTTTTTGGT 59.467 36.000 0.00 0.00 0.00 3.67
4217 6597 5.856455 GTGTCCTGATAATTGTCGTTTTTGG 59.144 40.000 0.00 0.00 0.00 3.28
4218 6598 6.434596 TGTGTCCTGATAATTGTCGTTTTTG 58.565 36.000 0.00 0.00 0.00 2.44
4219 6599 6.627395 TGTGTCCTGATAATTGTCGTTTTT 57.373 33.333 0.00 0.00 0.00 1.94
4220 6600 6.817765 ATGTGTCCTGATAATTGTCGTTTT 57.182 33.333 0.00 0.00 0.00 2.43
4221 6601 6.315393 GGTATGTGTCCTGATAATTGTCGTTT 59.685 38.462 0.00 0.00 0.00 3.60
4222 6602 5.815740 GGTATGTGTCCTGATAATTGTCGTT 59.184 40.000 0.00 0.00 0.00 3.85
4223 6603 5.357257 GGTATGTGTCCTGATAATTGTCGT 58.643 41.667 0.00 0.00 0.00 4.34
4224 6604 4.750098 GGGTATGTGTCCTGATAATTGTCG 59.250 45.833 0.00 0.00 0.00 4.35
4225 6605 4.750098 CGGGTATGTGTCCTGATAATTGTC 59.250 45.833 0.00 0.00 33.49 3.18
4226 6606 4.703897 CGGGTATGTGTCCTGATAATTGT 58.296 43.478 0.00 0.00 33.49 2.71
4227 6607 3.498397 GCGGGTATGTGTCCTGATAATTG 59.502 47.826 0.00 0.00 33.49 2.32
4228 6608 3.740115 GCGGGTATGTGTCCTGATAATT 58.260 45.455 0.00 0.00 33.49 1.40
4229 6609 2.288825 CGCGGGTATGTGTCCTGATAAT 60.289 50.000 0.00 0.00 33.49 1.28
4230 6610 1.067974 CGCGGGTATGTGTCCTGATAA 59.932 52.381 0.00 0.00 33.49 1.75
4231 6611 0.671796 CGCGGGTATGTGTCCTGATA 59.328 55.000 0.00 0.00 33.49 2.15
4232 6612 1.040893 TCGCGGGTATGTGTCCTGAT 61.041 55.000 6.13 0.00 33.49 2.90
4233 6613 1.679641 TCGCGGGTATGTGTCCTGA 60.680 57.895 6.13 0.00 33.49 3.86
4234 6614 1.518572 GTCGCGGGTATGTGTCCTG 60.519 63.158 6.13 0.00 34.70 3.86
4276 6656 1.067582 GAGCGACGATAACCCTGGG 59.932 63.158 12.28 12.28 0.00 4.45
4312 6692 0.540597 GCAAGGAGAAACCCAAGGCT 60.541 55.000 0.00 0.00 40.05 4.58
4360 6740 0.541863 GATACAGGGTGGGTCCACTG 59.458 60.000 18.32 12.61 45.52 3.66
4363 6743 0.415830 TGAGATACAGGGTGGGTCCA 59.584 55.000 0.00 0.00 38.11 4.02
4379 6759 4.379243 AAGCAGGTCGCCGGTGAG 62.379 66.667 20.25 8.29 44.04 3.51
4380 6760 4.680237 CAAGCAGGTCGCCGGTGA 62.680 66.667 15.21 15.21 44.04 4.02
4430 6810 1.543802 AGTCTCTTCGAGCTCAAGGTG 59.456 52.381 15.40 12.06 0.00 4.00
4454 6834 3.611025 TCCTCCCCAACAAATGTCTTT 57.389 42.857 0.00 0.00 0.00 2.52
4462 6842 2.178580 GCATCAAATCCTCCCCAACAA 58.821 47.619 0.00 0.00 0.00 2.83
4467 6847 0.259938 ACCAGCATCAAATCCTCCCC 59.740 55.000 0.00 0.00 0.00 4.81
4472 6852 1.315257 ACGCCACCAGCATCAAATCC 61.315 55.000 0.00 0.00 44.04 3.01
4474 6854 0.608856 TCACGCCACCAGCATCAAAT 60.609 50.000 0.00 0.00 44.04 2.32
4489 6869 0.532862 ACACTCTGTTGGGCTTCACG 60.533 55.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.