Multiple sequence alignment - TraesCS7A01G148100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G148100 chr7A 100.000 5062 0 0 888 5949 101270483 101275544 0.000000e+00 9348.0
1 TraesCS7A01G148100 chr7A 100.000 539 0 0 1 539 101269596 101270134 0.000000e+00 996.0
2 TraesCS7A01G148100 chr7A 99.621 264 1 0 2206 2469 506291323 506291586 3.220000e-132 483.0
3 TraesCS7A01G148100 chr7A 97.445 274 6 1 2203 2475 624928099 624927826 3.250000e-127 466.0
4 TraesCS7A01G148100 chr7A 87.500 160 5 4 5522 5666 101295117 101295276 2.850000e-38 171.0
5 TraesCS7A01G148100 chr7D 96.773 2355 69 6 2464 4813 98994035 98996387 0.000000e+00 3921.0
6 TraesCS7A01G148100 chr7D 93.510 1171 71 3 3896 5062 99048849 99050018 0.000000e+00 1736.0
7 TraesCS7A01G148100 chr7D 88.976 1016 86 18 1195 2204 98993039 98994034 0.000000e+00 1232.0
8 TraesCS7A01G148100 chr7D 94.522 712 25 5 4705 5410 98996387 98997090 0.000000e+00 1086.0
9 TraesCS7A01G148100 chr7D 89.813 481 29 12 5191 5658 99181212 99181685 3.070000e-167 599.0
10 TraesCS7A01G148100 chr7D 85.714 574 38 12 1 539 98991873 98992437 3.110000e-157 566.0
11 TraesCS7A01G148100 chr7D 89.583 288 10 7 5397 5666 98997898 98998183 1.230000e-91 348.0
12 TraesCS7A01G148100 chr7D 88.764 178 5 5 955 1117 98992814 98992991 2.810000e-48 204.0
13 TraesCS7A01G148100 chr7D 86.735 98 12 1 5196 5293 162029654 162029558 2.270000e-19 108.0
14 TraesCS7A01G148100 chr7D 91.111 45 4 0 889 933 98992506 98992550 1.790000e-05 62.1
15 TraesCS7A01G148100 chr7B 95.036 1954 72 10 2465 4413 54497097 54499030 0.000000e+00 3048.0
16 TraesCS7A01G148100 chr7B 86.751 1268 103 40 955 2207 54495881 54497098 0.000000e+00 1351.0
17 TraesCS7A01G148100 chr7B 94.561 478 26 0 4451 4928 54499035 54499512 0.000000e+00 739.0
18 TraesCS7A01G148100 chr7B 91.667 336 23 5 4860 5194 54499642 54499973 1.510000e-125 460.0
19 TraesCS7A01G148100 chr7B 86.797 409 20 15 153 539 54495172 54495568 5.510000e-115 425.0
20 TraesCS7A01G148100 chr7B 95.376 173 7 1 5777 5949 54500576 54500747 2.110000e-69 274.0
21 TraesCS7A01G148100 chr7B 96.581 117 3 1 5670 5786 548384353 548384238 6.080000e-45 193.0
22 TraesCS7A01G148100 chr7B 95.833 120 4 1 5667 5786 579489602 579489720 6.080000e-45 193.0
23 TraesCS7A01G148100 chr7B 96.522 115 4 0 5670 5784 423767199 423767085 2.190000e-44 191.0
24 TraesCS7A01G148100 chr7B 76.838 272 38 9 5191 5440 54500131 54500399 4.840000e-26 130.0
25 TraesCS7A01G148100 chr7B 87.963 108 13 0 1 108 54494810 54494917 1.740000e-25 128.0
26 TraesCS7A01G148100 chr3A 99.242 264 1 1 2206 2468 741483457 741483194 5.390000e-130 475.0
27 TraesCS7A01G148100 chr3A 99.242 264 1 1 2206 2468 741557377 741557114 5.390000e-130 475.0
28 TraesCS7A01G148100 chr3A 99.237 262 2 0 2205 2466 522717636 522717897 1.940000e-129 473.0
29 TraesCS7A01G148100 chr3A 97.345 113 3 0 5670 5782 583676697 583676585 6.080000e-45 193.0
30 TraesCS7A01G148100 chr3A 84.848 99 11 4 5193 5289 334176980 334176884 4.910000e-16 97.1
31 TraesCS7A01G148100 chr2A 98.872 266 3 0 2201 2466 625961205 625961470 5.390000e-130 475.0
32 TraesCS7A01G148100 chr2A 98.155 271 3 2 2198 2467 651904413 651904144 6.980000e-129 472.0
33 TraesCS7A01G148100 chr2A 93.333 45 2 1 66 109 54010850 54010894 1.380000e-06 65.8
34 TraesCS7A01G148100 chr2A 80.519 77 11 4 74 146 57868396 57868472 8.330000e-04 56.5
35 TraesCS7A01G148100 chr1A 98.155 271 4 1 2201 2470 62255707 62255977 6.980000e-129 472.0
36 TraesCS7A01G148100 chrUn 95.486 288 10 3 2182 2466 32269623 32269336 1.950000e-124 457.0
37 TraesCS7A01G148100 chrUn 97.222 36 0 1 74 108 238787805 238787840 6.440000e-05 60.2
38 TraesCS7A01G148100 chrUn 97.222 36 0 1 74 108 240348469 240348434 6.440000e-05 60.2
39 TraesCS7A01G148100 chr1B 98.261 115 1 1 5670 5783 386204486 386204600 3.640000e-47 200.0
40 TraesCS7A01G148100 chr6B 96.552 116 4 0 5669 5784 195807056 195807171 6.080000e-45 193.0
41 TraesCS7A01G148100 chr6A 96.552 116 3 1 5670 5784 607450364 607450249 2.190000e-44 191.0
42 TraesCS7A01G148100 chr5B 95.763 118 4 1 5668 5784 18337221 18337338 7.870000e-44 189.0
43 TraesCS7A01G148100 chr4D 95.726 117 4 1 5668 5783 138117752 138117868 2.830000e-43 187.0
44 TraesCS7A01G148100 chr3D 87.129 101 11 2 5196 5295 380858014 380858113 4.870000e-21 113.0
45 TraesCS7A01G148100 chr3D 86.735 98 12 1 5196 5293 349953312 349953216 2.270000e-19 108.0
46 TraesCS7A01G148100 chr3D 85.859 99 10 4 5193 5289 250047146 250047242 1.050000e-17 102.0
47 TraesCS7A01G148100 chr3B 84.848 99 11 4 5193 5289 314351793 314351697 4.910000e-16 97.1
48 TraesCS7A01G148100 chr3B 97.368 38 0 1 72 108 128947784 128947747 4.980000e-06 63.9
49 TraesCS7A01G148100 chr2B 84.211 76 4 7 74 141 46881624 46881549 3.850000e-07 67.6
50 TraesCS7A01G148100 chr1D 97.297 37 0 1 73 108 458575679 458575643 1.790000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G148100 chr7A 101269596 101275544 5948 False 5172.000000 9348 100.000000 1 5949 2 chr7A.!!$F3 5948
1 TraesCS7A01G148100 chr7D 99048849 99050018 1169 False 1736.000000 1736 93.510000 3896 5062 1 chr7D.!!$F1 1166
2 TraesCS7A01G148100 chr7D 98991873 98998183 6310 False 1059.871429 3921 90.777571 1 5666 7 chr7D.!!$F3 5665
3 TraesCS7A01G148100 chr7B 54494810 54500747 5937 False 819.375000 3048 89.373625 1 5949 8 chr7B.!!$F2 5948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 537 0.321653 TCTTCTCTTCCCCGCAAAGC 60.322 55.000 0.00 0.00 0.00 3.51 F
1166 1675 0.250597 AGGTCAGCACGGGTAAAACC 60.251 55.000 0.00 0.00 37.60 3.27 F
1692 2204 0.605589 AGTTTTAGCACGAGGTGGCC 60.606 55.000 0.00 0.00 33.64 5.36 F
1810 2322 1.211703 TCAGGTCACAGTTCAAAGCCA 59.788 47.619 0.00 0.00 0.00 4.75 F
2988 3502 1.352017 TGCAAAGATGAGAGGAAGGCA 59.648 47.619 0.00 0.00 0.00 4.75 F
4396 4918 0.179092 TCACGGATGCTGCATCAGAG 60.179 55.000 37.19 31.22 42.13 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1259 1768 0.108424 CTTGGAGGGTTCGAGCTGAG 60.108 60.000 0.00 0.0 0.00 3.35 R
2467 2981 0.108138 GTAGCAGGTGAGCGTTCCAT 60.108 55.000 0.00 0.0 40.15 3.41 R
3181 3695 0.557729 ATTGGCCTACATCCCCCTTG 59.442 55.000 3.32 0.0 0.00 3.61 R
3468 3983 1.067565 TGAGGTCAGCGCAGAAACTAG 60.068 52.381 11.47 0.0 0.00 2.57 R
4690 5212 1.004277 AAGCGTTCTCAGCGAGTTCG 61.004 55.000 0.00 0.0 43.27 3.95 R
5444 7278 0.250901 TTGAGGAAGTGAAGCAGCCC 60.251 55.000 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 4.230657 CACACAACCGTTCTTTCAAAACA 58.769 39.130 0.00 0.00 0.00 2.83
68 69 4.323336 CACACAACCGTTCTTTCAAAACAG 59.677 41.667 0.00 0.00 0.00 3.16
108 109 6.292703 CCGTCCCATGATATAAGACGTTTTTC 60.293 42.308 9.63 0.00 46.62 2.29
109 110 6.292703 CGTCCCATGATATAAGACGTTTTTCC 60.293 42.308 0.00 0.00 43.89 3.13
110 111 5.756347 TCCCATGATATAAGACGTTTTTCCG 59.244 40.000 0.00 0.00 0.00 4.30
111 112 5.526111 CCCATGATATAAGACGTTTTTCCGT 59.474 40.000 0.00 0.00 45.18 4.69
117 293 0.529119 AGACGTTTTTCCGTGCTCGT 60.529 50.000 7.47 0.00 41.98 4.18
121 297 2.033492 ACGTTTTTCCGTGCTCGTAAAG 60.033 45.455 7.47 1.75 40.08 1.85
122 298 2.219216 CGTTTTTCCGTGCTCGTAAAGA 59.781 45.455 7.47 0.00 35.01 2.52
142 322 7.624706 AAAGACGTCTTATATTATGCGACAG 57.375 36.000 29.91 0.00 34.61 3.51
146 326 4.559251 CGTCTTATATTATGCGACAGAGGC 59.441 45.833 0.00 0.00 0.00 4.70
319 535 2.879103 AATCTTCTCTTCCCCGCAAA 57.121 45.000 0.00 0.00 0.00 3.68
320 536 2.409948 ATCTTCTCTTCCCCGCAAAG 57.590 50.000 0.00 0.00 0.00 2.77
321 537 0.321653 TCTTCTCTTCCCCGCAAAGC 60.322 55.000 0.00 0.00 0.00 3.51
442 694 2.073816 TCTCCTCCGAAAACAAATCGC 58.926 47.619 0.00 0.00 38.93 4.58
445 697 0.793104 CTCCGAAAACAAATCGCCGC 60.793 55.000 0.00 0.00 38.93 6.53
500 752 4.244802 CTCGCCTCGCCTCGTCTC 62.245 72.222 0.00 0.00 0.00 3.36
1036 1544 4.699522 GGCTCTTCAACCGGCGGT 62.700 66.667 28.83 28.83 37.65 5.68
1117 1626 3.068691 CCCCTTCTCGTCTCGGCA 61.069 66.667 0.00 0.00 0.00 5.69
1119 1628 2.344203 CCCTTCTCGTCTCGGCACT 61.344 63.158 0.00 0.00 0.00 4.40
1125 1634 0.508641 CTCGTCTCGGCACTTGTTTG 59.491 55.000 0.00 0.00 0.00 2.93
1126 1635 0.878523 TCGTCTCGGCACTTGTTTGG 60.879 55.000 0.00 0.00 0.00 3.28
1128 1637 1.021968 GTCTCGGCACTTGTTTGGTT 58.978 50.000 0.00 0.00 0.00 3.67
1129 1638 2.215196 GTCTCGGCACTTGTTTGGTTA 58.785 47.619 0.00 0.00 0.00 2.85
1130 1639 2.812011 GTCTCGGCACTTGTTTGGTTAT 59.188 45.455 0.00 0.00 0.00 1.89
1131 1640 3.252458 GTCTCGGCACTTGTTTGGTTATT 59.748 43.478 0.00 0.00 0.00 1.40
1132 1641 4.453136 GTCTCGGCACTTGTTTGGTTATTA 59.547 41.667 0.00 0.00 0.00 0.98
1133 1642 5.123344 GTCTCGGCACTTGTTTGGTTATTAT 59.877 40.000 0.00 0.00 0.00 1.28
1135 1644 6.879993 TCTCGGCACTTGTTTGGTTATTATTA 59.120 34.615 0.00 0.00 0.00 0.98
1136 1645 7.390996 TCTCGGCACTTGTTTGGTTATTATTAA 59.609 33.333 0.00 0.00 0.00 1.40
1137 1646 7.531716 TCGGCACTTGTTTGGTTATTATTAAG 58.468 34.615 0.00 0.00 0.00 1.85
1138 1647 6.252655 CGGCACTTGTTTGGTTATTATTAAGC 59.747 38.462 0.67 0.67 36.55 3.09
1139 1648 7.320399 GGCACTTGTTTGGTTATTATTAAGCT 58.680 34.615 7.78 0.00 36.87 3.74
1150 1659 8.044908 TGGTTATTATTAAGCTTTTCTCGAGGT 58.955 33.333 13.56 0.00 36.87 3.85
1152 1661 9.095065 GTTATTATTAAGCTTTTCTCGAGGTCA 57.905 33.333 13.56 0.00 0.00 4.02
1156 1665 0.793250 GCTTTTCTCGAGGTCAGCAC 59.207 55.000 13.56 0.00 0.00 4.40
1159 1668 2.154798 TTTCTCGAGGTCAGCACGGG 62.155 60.000 13.56 0.00 0.00 5.28
1160 1669 3.374402 CTCGAGGTCAGCACGGGT 61.374 66.667 3.91 0.00 0.00 5.28
1163 1672 1.180456 TCGAGGTCAGCACGGGTAAA 61.180 55.000 0.00 0.00 0.00 2.01
1164 1673 0.320073 CGAGGTCAGCACGGGTAAAA 60.320 55.000 0.00 0.00 0.00 1.52
1166 1675 0.250597 AGGTCAGCACGGGTAAAACC 60.251 55.000 0.00 0.00 37.60 3.27
1173 1682 3.259930 CGGGTAAAACCTGCACGG 58.740 61.111 0.00 1.16 37.90 4.94
1174 1683 2.959372 GGGTAAAACCTGCACGGC 59.041 61.111 2.50 0.00 38.64 5.68
1175 1684 1.602605 GGGTAAAACCTGCACGGCT 60.603 57.895 2.50 0.00 38.64 5.52
1176 1685 1.579429 GGTAAAACCTGCACGGCTG 59.421 57.895 0.00 0.00 34.73 4.85
1177 1686 1.081442 GTAAAACCTGCACGGCTGC 60.081 57.895 0.00 0.00 44.52 5.25
1178 1687 1.228124 TAAAACCTGCACGGCTGCT 60.228 52.632 0.00 0.00 44.57 4.24
1179 1688 1.234615 TAAAACCTGCACGGCTGCTC 61.235 55.000 0.00 0.00 44.57 4.26
1209 1718 3.103911 GACCTGTTCGTGCGACGG 61.104 66.667 8.46 0.00 42.81 4.79
1238 1747 2.561373 GCCGGAAAACCTTGCTCG 59.439 61.111 5.05 0.00 0.00 5.03
1271 1780 2.435059 GGTGCCTCAGCTCGAACC 60.435 66.667 0.00 0.00 40.80 3.62
1273 1782 2.604686 TGCCTCAGCTCGAACCCT 60.605 61.111 0.00 0.00 40.80 4.34
1298 1807 1.399343 GGTTTTAGTCCGCGACTTTGC 60.399 52.381 8.23 1.47 40.28 3.68
1339 1848 4.049546 TCCGTTCTTGTTCTTCTTTCGA 57.950 40.909 0.00 0.00 0.00 3.71
1344 1853 6.955963 CCGTTCTTGTTCTTCTTTCGATATTG 59.044 38.462 0.00 0.00 0.00 1.90
1519 2029 4.802051 TGCGCAGGAGGCCCATTC 62.802 66.667 5.66 0.00 40.31 2.67
1529 2039 1.952296 GAGGCCCATTCATTAGCTGTG 59.048 52.381 0.00 0.00 0.00 3.66
1575 2086 8.380099 ACCATAACAGGAACACTTTAGAATACA 58.620 33.333 0.00 0.00 0.00 2.29
1621 2132 4.191544 TCAGGCTGTCATTATTTTCTCCG 58.808 43.478 15.27 0.00 0.00 4.63
1627 2138 5.008613 GCTGTCATTATTTTCTCCGGCATTA 59.991 40.000 0.00 0.00 0.00 1.90
1641 2152 2.415168 CGGCATTACGTGTTCATTCAGT 59.585 45.455 0.00 0.00 0.00 3.41
1644 2155 3.364864 GCATTACGTGTTCATTCAGTGCA 60.365 43.478 0.00 0.00 0.00 4.57
1654 2165 1.086696 ATTCAGTGCAATTCGGTCCG 58.913 50.000 4.39 4.39 0.00 4.79
1692 2204 0.605589 AGTTTTAGCACGAGGTGGCC 60.606 55.000 0.00 0.00 33.64 5.36
1741 2253 5.277683 CGAACATGAATTCCTATGCTTCAGG 60.278 44.000 0.00 0.00 36.89 3.86
1773 2285 7.336427 GGATGCTCCTCCTGATTTATGAATTAG 59.664 40.741 0.00 0.00 32.53 1.73
1800 2312 4.701651 TCAATGGCTTAAATCAGGTCACAG 59.298 41.667 0.00 0.00 0.00 3.66
1810 2322 1.211703 TCAGGTCACAGTTCAAAGCCA 59.788 47.619 0.00 0.00 0.00 4.75
1813 2325 1.748493 GGTCACAGTTCAAAGCCACAA 59.252 47.619 0.00 0.00 0.00 3.33
1814 2326 2.479560 GGTCACAGTTCAAAGCCACAAC 60.480 50.000 0.00 0.00 0.00 3.32
1815 2327 2.163412 GTCACAGTTCAAAGCCACAACA 59.837 45.455 0.00 0.00 0.00 3.33
1816 2328 2.822561 TCACAGTTCAAAGCCACAACAA 59.177 40.909 0.00 0.00 0.00 2.83
1817 2329 3.119531 TCACAGTTCAAAGCCACAACAAG 60.120 43.478 0.00 0.00 0.00 3.16
1818 2330 2.825532 ACAGTTCAAAGCCACAACAAGT 59.174 40.909 0.00 0.00 0.00 3.16
1819 2331 4.013728 ACAGTTCAAAGCCACAACAAGTA 58.986 39.130 0.00 0.00 0.00 2.24
1820 2332 4.461081 ACAGTTCAAAGCCACAACAAGTAA 59.539 37.500 0.00 0.00 0.00 2.24
1821 2333 5.127031 ACAGTTCAAAGCCACAACAAGTAAT 59.873 36.000 0.00 0.00 0.00 1.89
1822 2334 5.459762 CAGTTCAAAGCCACAACAAGTAATG 59.540 40.000 0.00 0.00 0.00 1.90
1823 2335 5.359576 AGTTCAAAGCCACAACAAGTAATGA 59.640 36.000 0.00 0.00 0.00 2.57
1824 2336 5.437289 TCAAAGCCACAACAAGTAATGAG 57.563 39.130 0.00 0.00 0.00 2.90
1901 2414 7.658261 AGGTATTTGTTTTCTCCTTTTACTGC 58.342 34.615 0.00 0.00 0.00 4.40
1917 2430 7.271223 CCTTTTACTGCGAAATGAACTTATGTG 59.729 37.037 0.00 0.00 0.00 3.21
1920 2433 4.082274 TGCGAAATGAACTTATGTGCAG 57.918 40.909 0.00 0.00 34.76 4.41
1934 2448 7.614494 ACTTATGTGCAGCTTGGAATTATTTT 58.386 30.769 0.00 0.00 0.00 1.82
1936 2450 6.973229 ATGTGCAGCTTGGAATTATTTTTC 57.027 33.333 0.00 0.00 0.00 2.29
1993 2507 4.595762 AAACTAGCAGTTGGTCGAGTAA 57.404 40.909 2.88 0.00 38.66 2.24
2016 2530 4.649218 AGTTGGCTTACAATTCAACAAGGT 59.351 37.500 7.83 0.00 41.95 3.50
2084 2598 5.344743 TCTGTTTCTATCAGACATCCACC 57.655 43.478 0.00 0.00 37.07 4.61
2124 2638 6.399639 ACCAAGTTACCAACTACCATTTTG 57.600 37.500 0.00 0.00 41.91 2.44
2126 2640 6.381707 ACCAAGTTACCAACTACCATTTTGTT 59.618 34.615 0.00 0.00 41.91 2.83
2127 2641 7.093245 ACCAAGTTACCAACTACCATTTTGTTT 60.093 33.333 0.00 0.00 41.91 2.83
2180 2694 9.945904 TTTAAGTTAAATGTTTCAAAGTGGGTT 57.054 25.926 3.88 0.00 0.00 4.11
2210 2724 9.556030 GCTTTGTTCACATTACTTTTATACTCC 57.444 33.333 0.00 0.00 0.00 3.85
2212 2726 9.802039 TTTGTTCACATTACTTTTATACTCCCT 57.198 29.630 0.00 0.00 0.00 4.20
2213 2727 9.444600 TTGTTCACATTACTTTTATACTCCCTC 57.555 33.333 0.00 0.00 0.00 4.30
2214 2728 8.044908 TGTTCACATTACTTTTATACTCCCTCC 58.955 37.037 0.00 0.00 0.00 4.30
2215 2729 6.812998 TCACATTACTTTTATACTCCCTCCG 58.187 40.000 0.00 0.00 0.00 4.63
2216 2730 6.381994 TCACATTACTTTTATACTCCCTCCGT 59.618 38.462 0.00 0.00 0.00 4.69
2217 2731 7.046033 CACATTACTTTTATACTCCCTCCGTT 58.954 38.462 0.00 0.00 0.00 4.44
2218 2732 7.551617 CACATTACTTTTATACTCCCTCCGTTT 59.448 37.037 0.00 0.00 0.00 3.60
2219 2733 8.105197 ACATTACTTTTATACTCCCTCCGTTTT 58.895 33.333 0.00 0.00 0.00 2.43
2220 2734 8.953313 CATTACTTTTATACTCCCTCCGTTTTT 58.047 33.333 0.00 0.00 0.00 1.94
2224 2738 9.524496 ACTTTTATACTCCCTCCGTTTTTATTT 57.476 29.630 0.00 0.00 0.00 1.40
2228 2742 9.822185 TTATACTCCCTCCGTTTTTATTTACTC 57.178 33.333 0.00 0.00 0.00 2.59
2229 2743 6.370186 ACTCCCTCCGTTTTTATTTACTCT 57.630 37.500 0.00 0.00 0.00 3.24
2230 2744 6.171213 ACTCCCTCCGTTTTTATTTACTCTG 58.829 40.000 0.00 0.00 0.00 3.35
2231 2745 4.939439 TCCCTCCGTTTTTATTTACTCTGC 59.061 41.667 0.00 0.00 0.00 4.26
2232 2746 4.698304 CCCTCCGTTTTTATTTACTCTGCA 59.302 41.667 0.00 0.00 0.00 4.41
2233 2747 5.357032 CCCTCCGTTTTTATTTACTCTGCAT 59.643 40.000 0.00 0.00 0.00 3.96
2234 2748 6.540914 CCCTCCGTTTTTATTTACTCTGCATA 59.459 38.462 0.00 0.00 0.00 3.14
2235 2749 7.228706 CCCTCCGTTTTTATTTACTCTGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
2236 2750 8.621286 CCTCCGTTTTTATTTACTCTGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
2250 2764 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
2251 2765 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
2252 2766 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
2278 2792 6.505044 ACTTCGTAAAGTTTGACCAAGTTT 57.495 33.333 0.00 0.00 43.28 2.66
2279 2793 7.614124 ACTTCGTAAAGTTTGACCAAGTTTA 57.386 32.000 0.00 0.00 43.28 2.01
2280 2794 8.217131 ACTTCGTAAAGTTTGACCAAGTTTAT 57.783 30.769 0.00 0.00 43.28 1.40
2281 2795 9.328845 ACTTCGTAAAGTTTGACCAAGTTTATA 57.671 29.630 0.00 0.00 43.28 0.98
2282 2796 9.807386 CTTCGTAAAGTTTGACCAAGTTTATAG 57.193 33.333 0.00 2.48 40.73 1.31
2283 2797 9.545105 TTCGTAAAGTTTGACCAAGTTTATAGA 57.455 29.630 0.00 4.22 40.73 1.98
2284 2798 9.545105 TCGTAAAGTTTGACCAAGTTTATAGAA 57.455 29.630 0.00 0.00 40.73 2.10
2427 2941 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
2428 2942 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
2429 2943 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
2441 2955 3.670203 CTTTGACCAAAGCTAATACGCG 58.330 45.455 3.53 3.53 40.94 6.01
2442 2956 2.658373 TGACCAAAGCTAATACGCGA 57.342 45.000 15.93 0.00 34.40 5.87
2443 2957 2.962125 TGACCAAAGCTAATACGCGAA 58.038 42.857 15.93 0.00 34.40 4.70
2444 2958 2.669434 TGACCAAAGCTAATACGCGAAC 59.331 45.455 15.93 0.00 34.40 3.95
2445 2959 2.928116 GACCAAAGCTAATACGCGAACT 59.072 45.455 15.93 0.00 34.40 3.01
2446 2960 4.107622 GACCAAAGCTAATACGCGAACTA 58.892 43.478 15.93 0.00 34.40 2.24
2447 2961 4.497300 ACCAAAGCTAATACGCGAACTAA 58.503 39.130 15.93 0.00 34.40 2.24
2448 2962 4.931002 ACCAAAGCTAATACGCGAACTAAA 59.069 37.500 15.93 0.00 34.40 1.85
2449 2963 5.583457 ACCAAAGCTAATACGCGAACTAAAT 59.417 36.000 15.93 0.00 34.40 1.40
2450 2964 6.757947 ACCAAAGCTAATACGCGAACTAAATA 59.242 34.615 15.93 0.00 34.40 1.40
2451 2965 7.278424 ACCAAAGCTAATACGCGAACTAAATAA 59.722 33.333 15.93 0.00 34.40 1.40
2452 2966 8.117988 CCAAAGCTAATACGCGAACTAAATAAA 58.882 33.333 15.93 0.00 34.40 1.40
2453 2967 9.480538 CAAAGCTAATACGCGAACTAAATAAAA 57.519 29.630 15.93 0.00 34.40 1.52
2455 2969 9.481800 AAGCTAATACGCGAACTAAATAAAAAC 57.518 29.630 15.93 0.00 34.40 2.43
2456 2970 7.842721 AGCTAATACGCGAACTAAATAAAAACG 59.157 33.333 15.93 0.00 34.40 3.60
2457 2971 7.109259 GCTAATACGCGAACTAAATAAAAACGG 59.891 37.037 15.93 0.00 0.00 4.44
2458 2972 4.988708 ACGCGAACTAAATAAAAACGGA 57.011 36.364 15.93 0.00 0.00 4.69
2459 2973 4.949756 ACGCGAACTAAATAAAAACGGAG 58.050 39.130 15.93 0.00 0.00 4.63
2460 2974 4.143052 ACGCGAACTAAATAAAAACGGAGG 60.143 41.667 15.93 0.00 0.00 4.30
2461 2975 4.655027 GCGAACTAAATAAAAACGGAGGG 58.345 43.478 0.00 0.00 0.00 4.30
2462 2976 4.392754 GCGAACTAAATAAAAACGGAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
2463 2977 5.446875 GCGAACTAAATAAAAACGGAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
2464 2978 5.640783 CGAACTAAATAAAAACGGAGGGAGT 59.359 40.000 0.00 0.00 0.00 3.85
2465 2979 6.813152 CGAACTAAATAAAAACGGAGGGAGTA 59.187 38.462 0.00 0.00 0.00 2.59
2466 2980 7.493645 CGAACTAAATAAAAACGGAGGGAGTAT 59.506 37.037 0.00 0.00 0.00 2.12
2467 2981 9.822185 GAACTAAATAAAAACGGAGGGAGTATA 57.178 33.333 0.00 0.00 0.00 1.47
2469 2983 9.774413 ACTAAATAAAAACGGAGGGAGTATATG 57.226 33.333 0.00 0.00 0.00 1.78
2470 2984 9.216117 CTAAATAAAAACGGAGGGAGTATATGG 57.784 37.037 0.00 0.00 0.00 2.74
2585 3099 8.999431 CCTTTTAGATGCTAACTTTTGACTACA 58.001 33.333 0.00 0.00 0.00 2.74
2592 3106 9.974750 GATGCTAACTTTTGACTACATCTTTAC 57.025 33.333 0.00 0.00 32.04 2.01
2610 3124 7.979444 TCTTTACTTTCCAGTATTTGACCAG 57.021 36.000 0.00 0.00 35.32 4.00
2685 3199 4.082787 GGCATCTTAAAACAGCTACTTGCA 60.083 41.667 0.00 0.00 45.94 4.08
2697 3211 2.464865 CTACTTGCACGCTACTCCATC 58.535 52.381 0.00 0.00 0.00 3.51
2741 3255 4.357918 TTGAGGGAGGAAAGAAGAACAG 57.642 45.455 0.00 0.00 0.00 3.16
2770 3284 1.605710 CCCGCATTTTCTCAGGCTATG 59.394 52.381 0.00 0.00 0.00 2.23
2871 3385 1.474478 TCTAGTGAAAGCTGGCTCTCG 59.526 52.381 0.00 0.00 0.00 4.04
2888 3402 2.367567 TCTCGTTAAGCCAGGACAACTT 59.632 45.455 0.00 0.00 0.00 2.66
2934 3448 2.197324 TGGCCGGTCCTTGCTTTT 59.803 55.556 2.12 0.00 35.26 2.27
2988 3502 1.352017 TGCAAAGATGAGAGGAAGGCA 59.648 47.619 0.00 0.00 0.00 4.75
2996 3510 1.556911 TGAGAGGAAGGCATTGGAGAC 59.443 52.381 0.00 0.00 0.00 3.36
3181 3695 3.004862 ACGGTACCGAATTTTGATGGTC 58.995 45.455 39.52 0.00 42.83 4.02
3222 3736 7.309990 CCAATATTTCGAATTTATGGCCCAGAT 60.310 37.037 0.00 0.00 0.00 2.90
3235 3749 3.745546 CAGATCCCCTGGCTCCAA 58.254 61.111 0.00 0.00 39.23 3.53
3415 3930 8.723942 GAACATCATTAGTTCATTACTGACCT 57.276 34.615 0.00 0.00 43.64 3.85
3416 3931 9.817809 GAACATCATTAGTTCATTACTGACCTA 57.182 33.333 0.00 0.00 43.64 3.08
3426 3941 9.965902 AGTTCATTACTGACCTATTCTCAAAAT 57.034 29.630 0.00 0.00 35.19 1.82
3433 3948 7.010160 ACTGACCTATTCTCAAAATGGGAAAA 58.990 34.615 7.11 0.00 40.72 2.29
3466 3981 5.888982 AGACCCTTGAACTCTTTAAGTCA 57.111 39.130 0.00 0.00 37.17 3.41
3468 3983 6.056236 AGACCCTTGAACTCTTTAAGTCAAC 58.944 40.000 0.00 0.00 37.17 3.18
3495 4013 1.662629 CTGCGCTGACCTCATAAACTG 59.337 52.381 9.73 0.00 0.00 3.16
3531 4049 1.152333 ACCCCTGACCAAAAAGGCC 60.152 57.895 0.00 0.00 43.14 5.19
3540 4058 4.195416 TGACCAAAAAGGCCAAAACAATC 58.805 39.130 5.01 0.00 43.14 2.67
3575 4093 7.412063 CCAACTGTTGGTTAAGTGTAGTTTAC 58.588 38.462 27.51 0.00 45.93 2.01
3606 4124 0.981183 TTCTTACCCAGCCGTGATGT 59.019 50.000 0.00 0.00 0.00 3.06
3629 4147 1.334556 GCGATTATGCCACATCAGCAA 59.665 47.619 0.00 0.00 44.83 3.91
3634 4152 4.870123 TTATGCCACATCAGCAAAAGTT 57.130 36.364 0.00 0.00 44.83 2.66
3674 4192 7.829211 ACCACCATATTATCGAATTTATCTGGG 59.171 37.037 0.00 0.00 0.00 4.45
3684 4202 4.700213 CGAATTTATCTGGGTTGGACAGTT 59.300 41.667 0.00 0.00 37.25 3.16
3699 4217 5.441500 TGGACAGTTGAATGGTTGAAGTTA 58.558 37.500 0.00 0.00 0.00 2.24
3767 4285 8.397575 AGAGTTTTCCCTTCTTGAAATACTTC 57.602 34.615 0.00 0.00 32.19 3.01
3781 4299 8.477419 TTGAAATACTTCAGATTTCCTTGGTT 57.523 30.769 5.83 0.00 42.48 3.67
3787 4305 6.784031 ACTTCAGATTTCCTTGGTTATCTGT 58.216 36.000 21.13 9.47 42.77 3.41
3946 4464 7.596621 GCAAGATATCCTTAAGCTTAAATTGCC 59.403 37.037 19.10 7.88 32.86 4.52
3962 4484 6.763303 AAATTGCCGAACTGAAAACATTAC 57.237 33.333 0.00 0.00 0.00 1.89
4224 4746 6.325286 AGAGTTGAGGTAACCAGATAATCCTC 59.675 42.308 0.00 0.00 40.24 3.71
4351 4873 0.994995 CGATTCACACTTCTGAGCCG 59.005 55.000 0.00 0.00 0.00 5.52
4396 4918 0.179092 TCACGGATGCTGCATCAGAG 60.179 55.000 37.19 31.22 42.13 3.35
4518 5040 4.646040 CAGATCTGTCCAGACTTCTCAGAT 59.354 45.833 14.95 8.10 44.88 2.90
4617 5139 2.238521 GGATGCACCAAAGTTTGAGGA 58.761 47.619 17.33 10.44 38.79 3.71
4690 5212 1.611936 GGCCCAACCTCTCAAGAAGAC 60.612 57.143 0.00 0.00 34.51 3.01
4951 5779 6.015519 CGATAGAACTGGAAGGATCTTGAGAT 60.016 42.308 0.00 0.00 36.03 2.75
4959 5787 1.478510 AGGATCTTGAGATTGCGACGT 59.521 47.619 0.00 0.00 34.37 4.34
4961 5789 1.590238 GATCTTGAGATTGCGACGTGG 59.410 52.381 0.00 0.00 34.37 4.94
4997 5825 1.299648 GCAGCACTGGTCCATGGTA 59.700 57.895 12.58 0.00 0.00 3.25
5109 5938 7.932335 ACGTTGGTTAAACATGTGAGAAATTA 58.068 30.769 0.00 0.00 38.84 1.40
5127 5956 9.558396 GAGAAATTATCAAATCATCTCTCCAGT 57.442 33.333 0.00 0.00 36.25 4.00
5175 6004 2.183679 AGAGGTGGAGCTTCGATTCTT 58.816 47.619 0.00 0.00 0.00 2.52
5270 6260 4.282703 ACTTTTGATGAGCTTGGCAAGAAT 59.717 37.500 30.45 18.82 0.00 2.40
5303 6293 4.513692 CCAACCAATCACTTTCGAACACTA 59.486 41.667 0.00 0.00 0.00 2.74
5304 6294 5.440685 CAACCAATCACTTTCGAACACTAC 58.559 41.667 0.00 0.00 0.00 2.73
5351 6363 2.250188 CCAAGAAATGGTTTAAGCGCG 58.750 47.619 0.00 0.00 44.85 6.86
5371 6383 2.143925 GGTAGGAAAGATGCATACGGC 58.856 52.381 0.00 0.00 45.13 5.68
5444 7278 2.756840 TCACAGGCTGAGACAAGATG 57.243 50.000 23.66 6.31 0.00 2.90
5462 7296 1.376466 GGGCTGCTTCACTTCCTCA 59.624 57.895 0.00 0.00 0.00 3.86
5463 7297 0.250901 GGGCTGCTTCACTTCCTCAA 60.251 55.000 0.00 0.00 0.00 3.02
5465 7299 2.165998 GGCTGCTTCACTTCCTCAATT 58.834 47.619 0.00 0.00 0.00 2.32
5468 7302 3.254166 GCTGCTTCACTTCCTCAATTCAA 59.746 43.478 0.00 0.00 0.00 2.69
5471 7305 3.569701 GCTTCACTTCCTCAATTCAACCA 59.430 43.478 0.00 0.00 0.00 3.67
5587 7427 6.146021 GGCGAATTCAAACATTTTCAGAACAT 59.854 34.615 6.22 0.00 0.00 2.71
5593 7436 5.302568 TCAAACATTTTCAGAACATGGAGCT 59.697 36.000 12.88 0.00 0.00 4.09
5666 7522 5.447624 AAACTGGTGAATCCTTTTTACCG 57.552 39.130 0.00 0.00 37.07 4.02
5667 7523 4.094830 ACTGGTGAATCCTTTTTACCGT 57.905 40.909 0.00 0.00 37.07 4.83
5668 7524 4.070009 ACTGGTGAATCCTTTTTACCGTC 58.930 43.478 0.00 0.00 37.07 4.79
5669 7525 4.202430 ACTGGTGAATCCTTTTTACCGTCT 60.202 41.667 0.00 0.00 37.07 4.18
5670 7526 5.012354 ACTGGTGAATCCTTTTTACCGTCTA 59.988 40.000 0.00 0.00 37.07 2.59
5671 7527 5.240121 TGGTGAATCCTTTTTACCGTCTAC 58.760 41.667 0.00 0.00 37.07 2.59
5672 7528 5.012354 TGGTGAATCCTTTTTACCGTCTACT 59.988 40.000 0.00 0.00 37.07 2.57
5673 7529 5.579904 GGTGAATCCTTTTTACCGTCTACTC 59.420 44.000 0.00 0.00 0.00 2.59
5674 7530 5.579904 GTGAATCCTTTTTACCGTCTACTCC 59.420 44.000 0.00 0.00 0.00 3.85
5675 7531 4.750021 ATCCTTTTTACCGTCTACTCCC 57.250 45.455 0.00 0.00 0.00 4.30
5676 7532 3.782992 TCCTTTTTACCGTCTACTCCCT 58.217 45.455 0.00 0.00 0.00 4.20
5677 7533 3.766051 TCCTTTTTACCGTCTACTCCCTC 59.234 47.826 0.00 0.00 0.00 4.30
5678 7534 3.118847 CCTTTTTACCGTCTACTCCCTCC 60.119 52.174 0.00 0.00 0.00 4.30
5679 7535 1.755179 TTTACCGTCTACTCCCTCCG 58.245 55.000 0.00 0.00 0.00 4.63
5680 7536 0.620556 TTACCGTCTACTCCCTCCGT 59.379 55.000 0.00 0.00 0.00 4.69
5681 7537 0.620556 TACCGTCTACTCCCTCCGTT 59.379 55.000 0.00 0.00 0.00 4.44
5682 7538 0.679321 ACCGTCTACTCCCTCCGTTC 60.679 60.000 0.00 0.00 0.00 3.95
5683 7539 1.712977 CCGTCTACTCCCTCCGTTCG 61.713 65.000 0.00 0.00 0.00 3.95
5684 7540 1.712977 CGTCTACTCCCTCCGTTCGG 61.713 65.000 4.74 4.74 0.00 4.30
5685 7541 0.393537 GTCTACTCCCTCCGTTCGGA 60.394 60.000 13.34 13.34 0.00 4.55
5686 7542 0.329261 TCTACTCCCTCCGTTCGGAA 59.671 55.000 14.79 0.04 33.41 4.30
5687 7543 1.064166 TCTACTCCCTCCGTTCGGAAT 60.064 52.381 14.79 2.09 33.41 3.01
5688 7544 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
5689 7545 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5690 7546 2.395619 ACTCCCTCCGTTCGGAATTAT 58.604 47.619 14.79 0.00 33.41 1.28
5691 7547 2.770232 ACTCCCTCCGTTCGGAATTATT 59.230 45.455 14.79 0.00 33.41 1.40
5692 7548 3.199289 ACTCCCTCCGTTCGGAATTATTT 59.801 43.478 14.79 0.00 33.41 1.40
5693 7549 3.537580 TCCCTCCGTTCGGAATTATTTG 58.462 45.455 14.79 1.97 33.41 2.32
5694 7550 3.054948 TCCCTCCGTTCGGAATTATTTGT 60.055 43.478 14.79 0.00 33.41 2.83
5695 7551 3.311596 CCCTCCGTTCGGAATTATTTGTC 59.688 47.826 14.79 0.00 33.41 3.18
5696 7552 3.000925 CCTCCGTTCGGAATTATTTGTCG 59.999 47.826 14.79 0.00 33.41 4.35
5697 7553 2.349275 TCCGTTCGGAATTATTTGTCGC 59.651 45.455 11.66 0.00 0.00 5.19
5698 7554 2.094575 CCGTTCGGAATTATTTGTCGCA 59.905 45.455 5.19 0.00 0.00 5.10
5699 7555 3.342269 CGTTCGGAATTATTTGTCGCAG 58.658 45.455 0.00 0.00 0.00 5.18
5700 7556 3.061563 CGTTCGGAATTATTTGTCGCAGA 59.938 43.478 0.00 0.00 0.00 4.26
5701 7557 4.434989 CGTTCGGAATTATTTGTCGCAGAA 60.435 41.667 0.00 0.00 39.69 3.02
5702 7558 5.387279 GTTCGGAATTATTTGTCGCAGAAA 58.613 37.500 0.00 0.00 39.69 2.52
5703 7559 5.811399 TCGGAATTATTTGTCGCAGAAAT 57.189 34.783 0.00 0.00 39.69 2.17
5704 7560 5.568482 TCGGAATTATTTGTCGCAGAAATG 58.432 37.500 0.00 0.00 39.69 2.32
5705 7561 4.734854 CGGAATTATTTGTCGCAGAAATGG 59.265 41.667 0.00 0.00 39.69 3.16
5706 7562 5.448496 CGGAATTATTTGTCGCAGAAATGGA 60.448 40.000 0.00 0.00 39.69 3.41
5707 7563 6.507023 GGAATTATTTGTCGCAGAAATGGAT 58.493 36.000 0.00 0.00 39.69 3.41
5708 7564 6.418819 GGAATTATTTGTCGCAGAAATGGATG 59.581 38.462 0.00 0.00 39.69 3.51
5709 7565 5.895636 TTATTTGTCGCAGAAATGGATGT 57.104 34.783 0.00 0.00 39.69 3.06
5710 7566 6.993786 TTATTTGTCGCAGAAATGGATGTA 57.006 33.333 0.00 0.00 39.69 2.29
5711 7567 7.566760 TTATTTGTCGCAGAAATGGATGTAT 57.433 32.000 0.00 0.00 39.69 2.29
5712 7568 5.484173 TTTGTCGCAGAAATGGATGTATC 57.516 39.130 0.00 0.00 39.69 2.24
5713 7569 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
5714 7570 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
5715 7571 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
5716 7572 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
5717 7573 6.015095 TGTCGCAGAAATGGATGTATCTAGAT 60.015 38.462 10.73 10.73 39.69 1.98
5718 7574 6.309980 GTCGCAGAAATGGATGTATCTAGATG 59.690 42.308 15.79 0.00 39.69 2.90
5719 7575 6.015095 TCGCAGAAATGGATGTATCTAGATGT 60.015 38.462 15.79 1.25 0.00 3.06
5720 7576 7.176690 TCGCAGAAATGGATGTATCTAGATGTA 59.823 37.037 15.79 4.44 0.00 2.29
5721 7577 7.978414 CGCAGAAATGGATGTATCTAGATGTAT 59.022 37.037 15.79 9.11 0.00 2.29
5722 7578 9.664332 GCAGAAATGGATGTATCTAGATGTATT 57.336 33.333 15.79 4.32 0.00 1.89
5749 7605 9.967346 TTAGTTCTAGATACATCCATTTTCGAG 57.033 33.333 0.00 0.00 0.00 4.04
5750 7606 8.239038 AGTTCTAGATACATCCATTTTCGAGA 57.761 34.615 0.00 0.00 0.00 4.04
5751 7607 8.138712 AGTTCTAGATACATCCATTTTCGAGAC 58.861 37.037 0.00 0.00 0.00 3.36
5752 7608 7.582667 TCTAGATACATCCATTTTCGAGACA 57.417 36.000 0.00 0.00 0.00 3.41
5753 7609 8.007405 TCTAGATACATCCATTTTCGAGACAA 57.993 34.615 0.00 0.00 0.00 3.18
5754 7610 8.138074 TCTAGATACATCCATTTTCGAGACAAG 58.862 37.037 0.00 0.00 0.00 3.16
5755 7611 6.644347 AGATACATCCATTTTCGAGACAAGT 58.356 36.000 0.00 0.00 0.00 3.16
5756 7612 7.782049 AGATACATCCATTTTCGAGACAAGTA 58.218 34.615 0.00 0.00 0.00 2.24
5757 7613 8.258007 AGATACATCCATTTTCGAGACAAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
5758 7614 8.964476 ATACATCCATTTTCGAGACAAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
5759 7615 7.687941 ACATCCATTTTCGAGACAAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
5760 7616 7.752695 ACATCCATTTTCGAGACAAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
5761 7617 6.737254 TCCATTTTCGAGACAAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
5762 7618 5.350365 TCCATTTTCGAGACAAGTAATTCCG 59.650 40.000 0.00 0.00 0.00 4.30
5763 7619 5.350365 CCATTTTCGAGACAAGTAATTCCGA 59.650 40.000 0.00 0.00 0.00 4.55
5764 7620 6.128391 CCATTTTCGAGACAAGTAATTCCGAA 60.128 38.462 0.00 0.00 33.57 4.30
5765 7621 5.834239 TTTCGAGACAAGTAATTCCGAAC 57.166 39.130 0.00 0.00 34.86 3.95
5766 7622 3.495193 TCGAGACAAGTAATTCCGAACG 58.505 45.455 0.00 0.00 0.00 3.95
5767 7623 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
5768 7624 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
5769 7625 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
5770 7626 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
5771 7627 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
5772 7628 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
5773 7629 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
5774 7630 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
5775 7631 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
5791 7647 8.634444 CGGAGGGAGTATTATTTATCCTCATAG 58.366 40.741 0.00 0.00 40.58 2.23
5810 7666 7.613411 CCTCATAGGAAAAGGAAAAGAAGTCAT 59.387 37.037 0.00 0.00 37.67 3.06
5843 7699 3.303066 GCAAAACGGCAAAAGATCAAACC 60.303 43.478 0.00 0.00 0.00 3.27
5845 7701 4.400529 AAACGGCAAAAGATCAAACCTT 57.599 36.364 0.00 0.00 0.00 3.50
5920 7776 9.887406 AACTACAAATAACCTGTGTTAAAATCG 57.113 29.630 0.00 0.00 40.21 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 4.468510 AGGTTTGAATACGATGGAGTGGTA 59.531 41.667 0.00 0.00 0.00 3.25
16 17 5.880054 AAAGGTTTGAATACGATGGAGTG 57.120 39.130 0.00 0.00 0.00 3.51
20 21 5.469479 AGCAAAAAGGTTTGAATACGATGG 58.531 37.500 3.44 0.00 45.99 3.51
26 27 5.127845 TGTGTGGAGCAAAAAGGTTTGAATA 59.872 36.000 3.44 0.00 45.99 1.75
67 68 2.092484 GGACGGAGGGAGTAGTAGTTCT 60.092 54.545 0.00 0.00 0.00 3.01
68 69 2.296792 GGACGGAGGGAGTAGTAGTTC 58.703 57.143 0.00 0.00 0.00 3.01
117 293 8.562052 TCTGTCGCATAATATAAGACGTCTTTA 58.438 33.333 33.82 23.86 37.40 1.85
121 297 5.795939 CCTCTGTCGCATAATATAAGACGTC 59.204 44.000 7.70 7.70 34.82 4.34
122 298 5.700846 CCTCTGTCGCATAATATAAGACGT 58.299 41.667 0.00 0.00 34.82 4.34
137 317 1.136984 GTCTGGTACGCCTCTGTCG 59.863 63.158 0.00 0.00 35.27 4.35
146 326 1.182667 TGGATGTGGAGTCTGGTACG 58.817 55.000 0.00 0.00 0.00 3.67
184 399 3.245797 GAATCGCTTTTGCTTTTCCTCC 58.754 45.455 0.00 0.00 44.80 4.30
290 506 1.475403 AGAGAAGATTTCCGAGCGGA 58.525 50.000 7.66 7.66 43.52 5.54
319 535 2.256764 CGTCACTCGTGAGCTGCT 59.743 61.111 0.00 0.00 40.75 4.24
320 536 2.083522 GTCGTCACTCGTGAGCTGC 61.084 63.158 0.00 0.00 40.75 5.25
321 537 1.794003 CGTCGTCACTCGTGAGCTG 60.794 63.158 0.00 0.00 40.75 4.24
346 562 2.806856 CTCGTGCTGGCTCATTCGC 61.807 63.158 0.00 0.00 0.00 4.70
417 648 3.402628 TTGTTTTCGGAGGAGAGAAGG 57.597 47.619 0.00 0.00 0.00 3.46
442 694 0.250727 TCTGGGTCTTTTCCTTGCGG 60.251 55.000 0.00 0.00 0.00 5.69
445 697 1.144913 TGGGTCTGGGTCTTTTCCTTG 59.855 52.381 0.00 0.00 0.00 3.61
946 1198 3.186909 GGAATTCAAAAATGCTACGGGC 58.813 45.455 7.93 0.00 42.22 6.13
947 1199 3.434637 CGGAATTCAAAAATGCTACGGG 58.565 45.455 7.93 0.00 0.00 5.28
948 1200 2.851824 GCGGAATTCAAAAATGCTACGG 59.148 45.455 7.93 0.00 0.00 4.02
949 1201 2.525891 CGCGGAATTCAAAAATGCTACG 59.474 45.455 7.93 0.00 0.00 3.51
950 1202 2.278875 GCGCGGAATTCAAAAATGCTAC 59.721 45.455 8.83 0.00 0.00 3.58
951 1203 2.525055 GCGCGGAATTCAAAAATGCTA 58.475 42.857 8.83 0.00 0.00 3.49
952 1204 1.349234 GCGCGGAATTCAAAAATGCT 58.651 45.000 8.83 0.00 0.00 3.79
953 1205 0.369931 GGCGCGGAATTCAAAAATGC 59.630 50.000 8.83 2.16 0.00 3.56
1102 1610 0.734253 CAAGTGCCGAGACGAGAAGG 60.734 60.000 0.00 0.00 0.00 3.46
1103 1611 0.039074 ACAAGTGCCGAGACGAGAAG 60.039 55.000 0.00 0.00 0.00 2.85
1125 1634 8.434733 ACCTCGAGAAAAGCTTAATAATAACC 57.565 34.615 15.71 0.00 0.00 2.85
1126 1635 9.095065 TGACCTCGAGAAAAGCTTAATAATAAC 57.905 33.333 15.71 0.00 0.00 1.89
1128 1637 7.438459 GCTGACCTCGAGAAAAGCTTAATAATA 59.562 37.037 15.71 0.00 0.00 0.98
1129 1638 6.258947 GCTGACCTCGAGAAAAGCTTAATAAT 59.741 38.462 15.71 0.00 0.00 1.28
1130 1639 5.581085 GCTGACCTCGAGAAAAGCTTAATAA 59.419 40.000 15.71 0.00 0.00 1.40
1131 1640 5.109903 GCTGACCTCGAGAAAAGCTTAATA 58.890 41.667 15.71 0.00 0.00 0.98
1132 1641 3.935828 GCTGACCTCGAGAAAAGCTTAAT 59.064 43.478 15.71 0.00 0.00 1.40
1133 1642 3.244078 TGCTGACCTCGAGAAAAGCTTAA 60.244 43.478 24.15 9.72 0.00 1.85
1135 1644 1.070758 TGCTGACCTCGAGAAAAGCTT 59.929 47.619 24.15 0.00 0.00 3.74
1136 1645 0.681733 TGCTGACCTCGAGAAAAGCT 59.318 50.000 24.15 0.00 0.00 3.74
1137 1646 0.793250 GTGCTGACCTCGAGAAAAGC 59.207 55.000 15.71 18.41 0.00 3.51
1138 1647 1.063806 CGTGCTGACCTCGAGAAAAG 58.936 55.000 15.71 8.84 32.48 2.27
1139 1648 0.319555 CCGTGCTGACCTCGAGAAAA 60.320 55.000 15.71 0.00 32.48 2.29
1143 1652 1.592400 TTACCCGTGCTGACCTCGAG 61.592 60.000 5.13 5.13 32.48 4.04
1144 1653 1.180456 TTTACCCGTGCTGACCTCGA 61.180 55.000 0.00 0.00 32.48 4.04
1147 1656 0.250597 GGTTTTACCCGTGCTGACCT 60.251 55.000 0.00 0.00 30.04 3.85
1150 1659 0.887387 GCAGGTTTTACCCGTGCTGA 60.887 55.000 3.59 0.00 39.75 4.26
1152 1661 1.149627 TGCAGGTTTTACCCGTGCT 59.850 52.632 10.29 0.00 39.75 4.40
1156 1665 2.973316 GCCGTGCAGGTTTTACCCG 61.973 63.158 5.57 0.00 39.75 5.28
1181 1690 2.876368 GAACAGGTCCATGCCGAGGG 62.876 65.000 0.00 0.00 0.00 4.30
1182 1691 1.450312 GAACAGGTCCATGCCGAGG 60.450 63.158 0.00 0.00 0.00 4.63
1186 1695 2.690778 GCACGAACAGGTCCATGCC 61.691 63.158 0.00 0.00 31.44 4.40
1189 1698 1.374252 GTCGCACGAACAGGTCCAT 60.374 57.895 0.00 0.00 0.00 3.41
1222 1731 1.164041 ACACGAGCAAGGTTTTCCGG 61.164 55.000 0.00 0.00 46.35 5.14
1223 1732 0.661020 AACACGAGCAAGGTTTTCCG 59.339 50.000 0.00 0.00 46.35 4.30
1225 1734 1.477105 GCAACACGAGCAAGGTTTTC 58.523 50.000 0.00 0.00 0.00 2.29
1257 1766 2.185608 GAGGGTTCGAGCTGAGGC 59.814 66.667 0.00 0.00 39.06 4.70
1259 1768 0.108424 CTTGGAGGGTTCGAGCTGAG 60.108 60.000 0.00 0.00 0.00 3.35
1271 1780 1.450025 GCGGACTAAAACCTTGGAGG 58.550 55.000 0.00 0.00 42.49 4.30
1273 1782 0.680618 TCGCGGACTAAAACCTTGGA 59.319 50.000 6.13 0.00 0.00 3.53
1307 1816 2.049802 GAACGGAACAGGTCGCGA 60.050 61.111 3.71 3.71 0.00 5.87
1308 1817 1.663702 AAGAACGGAACAGGTCGCG 60.664 57.895 0.00 0.00 32.02 5.87
1309 1818 0.878961 ACAAGAACGGAACAGGTCGC 60.879 55.000 0.00 0.00 32.02 5.19
1339 1848 9.632638 AACTGCAGAAGGAACATATAACAATAT 57.367 29.630 23.35 0.00 0.00 1.28
1344 1853 6.743575 ACAACTGCAGAAGGAACATATAAC 57.256 37.500 23.35 0.00 0.00 1.89
1349 1858 3.503748 GCTAACAACTGCAGAAGGAACAT 59.496 43.478 23.35 0.00 0.00 2.71
1350 1859 2.878406 GCTAACAACTGCAGAAGGAACA 59.122 45.455 23.35 0.00 0.00 3.18
1510 2020 1.410648 CCACAGCTAATGAATGGGCCT 60.411 52.381 4.53 0.00 0.00 5.19
1511 2021 1.035139 CCACAGCTAATGAATGGGCC 58.965 55.000 0.00 0.00 0.00 5.80
1529 2039 2.281498 GTCAAAAACGCAAAGTTCAGCC 59.719 45.455 0.00 0.00 43.37 4.85
1533 2043 5.517054 TGTTATGGTCAAAAACGCAAAGTTC 59.483 36.000 0.00 0.00 43.37 3.01
1575 2086 8.787818 TGATAAGGGATAACCAACTAATCCTTT 58.212 33.333 0.00 3.82 43.89 3.11
1621 2132 3.747193 CACTGAATGAACACGTAATGCC 58.253 45.455 0.00 0.00 0.00 4.40
1627 2138 3.606846 CGAATTGCACTGAATGAACACGT 60.607 43.478 0.00 0.00 0.00 4.49
1641 2152 0.322322 ACCTAACGGACCGAATTGCA 59.678 50.000 23.38 0.00 0.00 4.08
1644 2155 1.619827 TGTCACCTAACGGACCGAATT 59.380 47.619 23.38 8.04 33.09 2.17
1654 2165 9.233232 CTAAAACTTGTTGAAATGTCACCTAAC 57.767 33.333 0.00 0.00 31.90 2.34
1692 2204 1.657822 GAAGAAGCTAAAGCCCTCGG 58.342 55.000 0.00 0.00 43.38 4.63
1773 2285 5.357878 TGACCTGATTTAAGCCATTGATGAC 59.642 40.000 0.00 0.00 0.00 3.06
1786 2298 4.518970 GGCTTTGAACTGTGACCTGATTTA 59.481 41.667 0.00 0.00 0.00 1.40
1800 2312 5.587289 TCATTACTTGTTGTGGCTTTGAAC 58.413 37.500 0.00 0.00 0.00 3.18
1837 2349 2.016393 TATCAGGCACGGAGCTTCGG 62.016 60.000 20.69 8.97 44.79 4.30
1871 2383 6.819397 AAGGAGAAAACAAATACCTACTGC 57.181 37.500 0.00 0.00 0.00 4.40
1879 2391 7.499321 TCGCAGTAAAAGGAGAAAACAAATA 57.501 32.000 0.00 0.00 0.00 1.40
1889 2401 5.613358 AGTTCATTTCGCAGTAAAAGGAG 57.387 39.130 0.00 0.00 29.34 3.69
1901 2414 4.346734 AGCTGCACATAAGTTCATTTCG 57.653 40.909 1.02 0.00 0.00 3.46
1917 2430 7.599998 TGAGAAAGAAAAATAATTCCAAGCTGC 59.400 33.333 0.00 0.00 0.00 5.25
1993 2507 4.649218 ACCTTGTTGAATTGTAAGCCAACT 59.351 37.500 0.00 0.00 39.49 3.16
2006 2520 5.184864 TCAGAAAGCAAGAAACCTTGTTGAA 59.815 36.000 6.97 0.00 42.22 2.69
2016 2530 6.713903 AGTCAGATTCATCAGAAAGCAAGAAA 59.286 34.615 0.00 0.00 37.29 2.52
2058 2572 7.044181 GTGGATGTCTGATAGAAACAGAATGA 58.956 38.462 0.00 0.00 44.29 2.57
2063 2577 5.114780 CAGGTGGATGTCTGATAGAAACAG 58.885 45.833 0.00 0.00 36.80 3.16
2077 2591 2.071540 CATATGCTACGCAGGTGGATG 58.928 52.381 0.00 0.00 43.65 3.51
2084 2598 2.687370 TGGTATGCATATGCTACGCAG 58.313 47.619 27.13 0.00 43.65 5.18
2105 2619 8.301252 AGAAAACAAAATGGTAGTTGGTAACT 57.699 30.769 0.00 0.00 45.40 2.24
2124 2638 1.956477 ACCCATGCACACTGAGAAAAC 59.044 47.619 0.00 0.00 0.00 2.43
2126 2640 1.133823 ACACCCATGCACACTGAGAAA 60.134 47.619 0.00 0.00 0.00 2.52
2127 2641 0.473755 ACACCCATGCACACTGAGAA 59.526 50.000 0.00 0.00 0.00 2.87
2207 2721 5.064834 GCAGAGTAAATAAAAACGGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
2208 2722 4.939439 GCAGAGTAAATAAAAACGGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
2209 2723 4.698304 TGCAGAGTAAATAAAAACGGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
2210 2724 5.873179 TGCAGAGTAAATAAAAACGGAGG 57.127 39.130 0.00 0.00 0.00 4.30
2226 2740 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
2227 2741 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
2228 2742 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
2256 2770 9.807386 CTATAAACTTGGTCAAACTTTACGAAG 57.193 33.333 0.00 0.00 37.43 3.79
2257 2771 9.545105 TCTATAAACTTGGTCAAACTTTACGAA 57.455 29.630 0.00 0.00 0.00 3.85
2258 2772 9.545105 TTCTATAAACTTGGTCAAACTTTACGA 57.455 29.630 0.00 0.00 0.00 3.43
2395 2909 6.253512 GTCAAGCTTTACAAACTTTGACCAAG 59.746 38.462 8.55 7.77 38.64 3.61
2396 2910 6.071616 AGTCAAGCTTTACAAACTTTGACCAA 60.072 34.615 13.07 0.00 0.00 3.67
2397 2911 5.417580 AGTCAAGCTTTACAAACTTTGACCA 59.582 36.000 13.07 0.00 0.00 4.02
2398 2912 5.891451 AGTCAAGCTTTACAAACTTTGACC 58.109 37.500 13.07 0.00 0.00 4.02
2399 2913 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
2402 2916 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
2403 2917 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
2404 2918 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
2405 2919 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
2406 2920 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
2407 2921 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
2408 2922 5.890334 CTTTGGTCAAAGTCAAGCTTTACA 58.110 37.500 13.07 0.00 44.95 2.41
2421 2935 3.327626 TCGCGTATTAGCTTTGGTCAAA 58.672 40.909 5.77 0.00 34.40 2.69
2422 2936 2.962125 TCGCGTATTAGCTTTGGTCAA 58.038 42.857 5.77 0.00 34.40 3.18
2423 2937 2.658373 TCGCGTATTAGCTTTGGTCA 57.342 45.000 5.77 0.00 34.40 4.02
2424 2938 2.928116 AGTTCGCGTATTAGCTTTGGTC 59.072 45.455 5.77 0.00 34.40 4.02
2425 2939 2.968675 AGTTCGCGTATTAGCTTTGGT 58.031 42.857 5.77 0.00 34.40 3.67
2426 2940 5.459110 TTTAGTTCGCGTATTAGCTTTGG 57.541 39.130 5.77 0.00 34.40 3.28
2427 2941 9.480538 TTTTATTTAGTTCGCGTATTAGCTTTG 57.519 29.630 5.77 0.00 34.40 2.77
2429 2943 9.481800 GTTTTTATTTAGTTCGCGTATTAGCTT 57.518 29.630 5.77 0.00 34.40 3.74
2430 2944 7.842721 CGTTTTTATTTAGTTCGCGTATTAGCT 59.157 33.333 5.77 0.00 34.40 3.32
2431 2945 7.109259 CCGTTTTTATTTAGTTCGCGTATTAGC 59.891 37.037 5.77 0.00 0.00 3.09
2432 2946 8.320295 TCCGTTTTTATTTAGTTCGCGTATTAG 58.680 33.333 5.77 0.00 0.00 1.73
2433 2947 8.179148 TCCGTTTTTATTTAGTTCGCGTATTA 57.821 30.769 5.77 0.00 0.00 0.98
2434 2948 7.059448 TCCGTTTTTATTTAGTTCGCGTATT 57.941 32.000 5.77 0.00 0.00 1.89
2435 2949 6.237915 CCTCCGTTTTTATTTAGTTCGCGTAT 60.238 38.462 5.77 0.00 0.00 3.06
2436 2950 5.062058 CCTCCGTTTTTATTTAGTTCGCGTA 59.938 40.000 5.77 0.00 0.00 4.42
2437 2951 4.143052 CCTCCGTTTTTATTTAGTTCGCGT 60.143 41.667 5.77 0.00 0.00 6.01
2438 2952 4.328667 CCTCCGTTTTTATTTAGTTCGCG 58.671 43.478 0.00 0.00 0.00 5.87
2439 2953 4.392754 TCCCTCCGTTTTTATTTAGTTCGC 59.607 41.667 0.00 0.00 0.00 4.70
2440 2954 5.640783 ACTCCCTCCGTTTTTATTTAGTTCG 59.359 40.000 0.00 0.00 0.00 3.95
2441 2955 8.728337 ATACTCCCTCCGTTTTTATTTAGTTC 57.272 34.615 0.00 0.00 0.00 3.01
2443 2957 9.774413 CATATACTCCCTCCGTTTTTATTTAGT 57.226 33.333 0.00 0.00 0.00 2.24
2444 2958 9.216117 CCATATACTCCCTCCGTTTTTATTTAG 57.784 37.037 0.00 0.00 0.00 1.85
2445 2959 8.936787 TCCATATACTCCCTCCGTTTTTATTTA 58.063 33.333 0.00 0.00 0.00 1.40
2446 2960 7.808218 TCCATATACTCCCTCCGTTTTTATTT 58.192 34.615 0.00 0.00 0.00 1.40
2447 2961 7.383156 TCCATATACTCCCTCCGTTTTTATT 57.617 36.000 0.00 0.00 0.00 1.40
2448 2962 7.222161 GTTCCATATACTCCCTCCGTTTTTAT 58.778 38.462 0.00 0.00 0.00 1.40
2449 2963 6.585416 GTTCCATATACTCCCTCCGTTTTTA 58.415 40.000 0.00 0.00 0.00 1.52
2450 2964 5.434408 GTTCCATATACTCCCTCCGTTTTT 58.566 41.667 0.00 0.00 0.00 1.94
2451 2965 4.442472 CGTTCCATATACTCCCTCCGTTTT 60.442 45.833 0.00 0.00 0.00 2.43
2452 2966 3.069158 CGTTCCATATACTCCCTCCGTTT 59.931 47.826 0.00 0.00 0.00 3.60
2453 2967 2.626743 CGTTCCATATACTCCCTCCGTT 59.373 50.000 0.00 0.00 0.00 4.44
2454 2968 2.236766 CGTTCCATATACTCCCTCCGT 58.763 52.381 0.00 0.00 0.00 4.69
2455 2969 1.067776 GCGTTCCATATACTCCCTCCG 60.068 57.143 0.00 0.00 0.00 4.63
2456 2970 2.231721 GAGCGTTCCATATACTCCCTCC 59.768 54.545 0.00 0.00 0.00 4.30
2457 2971 2.891580 TGAGCGTTCCATATACTCCCTC 59.108 50.000 0.00 0.00 0.00 4.30
2458 2972 2.628657 GTGAGCGTTCCATATACTCCCT 59.371 50.000 0.00 0.00 0.00 4.20
2459 2973 2.288886 GGTGAGCGTTCCATATACTCCC 60.289 54.545 0.00 0.00 0.00 4.30
2460 2974 2.628657 AGGTGAGCGTTCCATATACTCC 59.371 50.000 0.00 0.00 0.00 3.85
2461 2975 3.643763 CAGGTGAGCGTTCCATATACTC 58.356 50.000 0.00 0.00 0.00 2.59
2462 2976 2.224066 GCAGGTGAGCGTTCCATATACT 60.224 50.000 0.00 0.00 0.00 2.12
2463 2977 2.135933 GCAGGTGAGCGTTCCATATAC 58.864 52.381 0.00 0.00 0.00 1.47
2464 2978 2.039418 AGCAGGTGAGCGTTCCATATA 58.961 47.619 0.00 0.00 40.15 0.86
2465 2979 0.833287 AGCAGGTGAGCGTTCCATAT 59.167 50.000 0.00 0.00 40.15 1.78
2466 2980 1.136305 GTAGCAGGTGAGCGTTCCATA 59.864 52.381 0.00 0.00 40.15 2.74
2467 2981 0.108138 GTAGCAGGTGAGCGTTCCAT 60.108 55.000 0.00 0.00 40.15 3.41
2468 2982 1.292223 GTAGCAGGTGAGCGTTCCA 59.708 57.895 0.00 0.00 40.15 3.53
2469 2983 1.448013 GGTAGCAGGTGAGCGTTCC 60.448 63.158 0.00 0.00 40.15 3.62
2470 2984 1.014564 GTGGTAGCAGGTGAGCGTTC 61.015 60.000 0.00 0.00 40.15 3.95
2542 3056 7.394016 TCTAAAAGGTGACAATGAGAGCAATA 58.606 34.615 0.00 0.00 0.00 1.90
2585 3099 8.164070 ACTGGTCAAATACTGGAAAGTAAAGAT 58.836 33.333 0.00 0.00 0.00 2.40
2592 3106 4.074970 AGCACTGGTCAAATACTGGAAAG 58.925 43.478 0.00 0.00 0.00 2.62
2610 3124 1.202580 AGCATATCCGTGGAGAAGCAC 60.203 52.381 12.58 0.00 0.00 4.40
2685 3199 3.735237 AATGAATCGATGGAGTAGCGT 57.265 42.857 0.00 0.00 39.64 5.07
2741 3255 1.291184 GAAAATGCGGGCAGTTTGGC 61.291 55.000 21.73 6.66 42.98 4.52
2770 3284 4.184629 GGATAACCCATCGCACTCATATC 58.815 47.826 0.00 0.00 34.12 1.63
2888 3402 5.109210 CGTGTTCTGAATGTATAAGCAGGA 58.891 41.667 0.00 0.00 0.00 3.86
2961 3475 2.354103 CCTCTCATCTTTGCACCTTCGA 60.354 50.000 0.00 0.00 0.00 3.71
2996 3510 2.033299 GGTGGTGCATATTTGTGGATCG 59.967 50.000 0.00 0.00 0.00 3.69
3046 3560 2.158475 TCAAATGAGAAGGTGCTGGGTT 60.158 45.455 0.00 0.00 0.00 4.11
3131 3645 1.748950 TGCACAGTTCAAGTTCAGCA 58.251 45.000 0.00 0.00 0.00 4.41
3181 3695 0.557729 ATTGGCCTACATCCCCCTTG 59.442 55.000 3.32 0.00 0.00 3.61
3222 3736 1.139498 TGTCATTTGGAGCCAGGGGA 61.139 55.000 0.00 0.00 0.00 4.81
3234 3748 5.133221 AGAACTTTGGCACTACTGTCATTT 58.867 37.500 0.00 0.00 30.10 2.32
3235 3749 4.718961 AGAACTTTGGCACTACTGTCATT 58.281 39.130 0.00 0.00 30.10 2.57
3350 3865 1.402787 AGACAAAAACCACAGCCCTG 58.597 50.000 0.00 0.00 0.00 4.45
3426 3941 9.196139 CAAGGGTCTAATATTTATGTTTTCCCA 57.804 33.333 0.00 0.00 33.23 4.37
3461 3976 2.802816 CAGCGCAGAAACTAGTTGACTT 59.197 45.455 11.47 0.00 0.00 3.01
3463 3978 2.155924 GTCAGCGCAGAAACTAGTTGAC 59.844 50.000 11.47 6.77 37.59 3.18
3464 3979 2.404215 GTCAGCGCAGAAACTAGTTGA 58.596 47.619 11.47 0.00 0.00 3.18
3465 3980 1.461127 GGTCAGCGCAGAAACTAGTTG 59.539 52.381 11.47 0.00 0.00 3.16
3466 3981 1.344763 AGGTCAGCGCAGAAACTAGTT 59.655 47.619 11.47 1.12 0.00 2.24
3468 3983 1.067565 TGAGGTCAGCGCAGAAACTAG 60.068 52.381 11.47 0.00 0.00 2.57
3495 4013 2.604614 GGGTGTGATTCGAGTGTTTTGC 60.605 50.000 0.00 0.00 0.00 3.68
3540 4058 1.471327 CCAACAGTTGGTGCAACAAGG 60.471 52.381 19.63 15.76 45.66 3.61
3570 4088 7.716560 TGGGTAAGAACTAGAAAAGGTGTAAAC 59.283 37.037 0.00 0.00 0.00 2.01
3575 4093 4.695928 GCTGGGTAAGAACTAGAAAAGGTG 59.304 45.833 0.00 0.00 0.00 4.00
3629 4147 8.644374 TGGTGGTATTCAAATAAGCTAACTTT 57.356 30.769 0.00 0.00 37.33 2.66
3674 4192 4.097892 ACTTCAACCATTCAACTGTCCAAC 59.902 41.667 0.00 0.00 0.00 3.77
3684 4202 7.685481 TCAACCTATCTAACTTCAACCATTCA 58.315 34.615 0.00 0.00 0.00 2.57
3699 4217 7.732222 ACTCTCTTCATTCTTCAACCTATCT 57.268 36.000 0.00 0.00 0.00 1.98
3767 4285 6.409704 TCTCACAGATAACCAAGGAAATCTG 58.590 40.000 22.29 22.29 46.94 2.90
3781 4299 9.817809 GTGTAAACCAATAATCTCTCACAGATA 57.182 33.333 0.00 0.00 41.47 1.98
4037 4559 1.730501 CTGACGCACTCCATGACAAT 58.269 50.000 0.00 0.00 0.00 2.71
4351 4873 2.755836 TGCTTTCACTTTCGCTTGAC 57.244 45.000 0.00 0.00 0.00 3.18
4396 4918 2.788786 CACGTTGTTCAAACCATTCTGC 59.211 45.455 0.00 0.00 0.00 4.26
4402 4924 1.745653 TCATGCACGTTGTTCAAACCA 59.254 42.857 0.00 0.00 0.00 3.67
4518 5040 7.340232 CAGAAGAATGGATATTTTCTGGTTCCA 59.660 37.037 4.97 0.00 40.54 3.53
4575 5097 2.557056 ACGGAGAGTTCACGATCTTGAA 59.443 45.455 10.38 10.38 32.94 2.69
4617 5139 1.660607 CAGCAATAGCATCGTTGTCGT 59.339 47.619 0.00 0.00 45.49 4.34
4690 5212 1.004277 AAGCGTTCTCAGCGAGTTCG 61.004 55.000 0.00 0.00 43.27 3.95
4951 5779 1.663388 CAGTAGCACCACGTCGCAA 60.663 57.895 4.17 0.00 0.00 4.85
4959 5787 1.349688 CCCCAGTTTACAGTAGCACCA 59.650 52.381 0.00 0.00 0.00 4.17
4961 5789 1.271163 TGCCCCAGTTTACAGTAGCAC 60.271 52.381 0.00 0.00 0.00 4.40
4997 5825 5.181811 GTGTTTAAACTACATTTAGGGCGGT 59.818 40.000 18.72 0.00 34.22 5.68
5127 5956 3.768757 CCATATGCCTCCAACTCCAAAAA 59.231 43.478 0.00 0.00 0.00 1.94
5175 6004 7.622713 ACCAATCAGCCATGAAAATGATAAAA 58.377 30.769 0.00 0.00 39.39 1.52
5270 6260 8.723311 CGAAAGTGATTGGTTGGTTATAAACTA 58.277 33.333 1.50 0.00 0.00 2.24
5303 6293 9.838339 CAACCTCAGGATATACTTTTTAGATGT 57.162 33.333 0.00 0.00 0.00 3.06
5304 6294 9.838339 ACAACCTCAGGATATACTTTTTAGATG 57.162 33.333 0.00 0.00 0.00 2.90
5344 6356 1.805120 GCATCTTTCCTACCGCGCTTA 60.805 52.381 5.56 0.00 0.00 3.09
5351 6363 2.143925 GCCGTATGCATCTTTCCTACC 58.856 52.381 0.19 0.00 40.77 3.18
5374 6386 2.162408 GAGTTCCTGGCAAAATCCTTCG 59.838 50.000 0.00 0.00 0.00 3.79
5390 6402 0.883833 CCAGGCCACAATGTGAGTTC 59.116 55.000 15.91 1.38 35.23 3.01
5444 7278 0.250901 TTGAGGAAGTGAAGCAGCCC 60.251 55.000 0.00 0.00 0.00 5.19
5587 7427 3.724478 TCCAGAGGAATAGAAAGCTCCA 58.276 45.455 0.00 0.00 0.00 3.86
5593 7436 8.367156 CAAAAATGGTTTCCAGAGGAATAGAAA 58.633 33.333 0.00 0.00 41.71 2.52
5658 7514 2.493278 CGGAGGGAGTAGACGGTAAAAA 59.507 50.000 0.00 0.00 0.00 1.94
5663 7519 0.679321 GAACGGAGGGAGTAGACGGT 60.679 60.000 0.00 0.00 0.00 4.83
5664 7520 1.712977 CGAACGGAGGGAGTAGACGG 61.713 65.000 0.00 0.00 0.00 4.79
5666 7522 0.393537 TCCGAACGGAGGGAGTAGAC 60.394 60.000 12.04 0.00 39.76 2.59
5667 7523 0.329261 TTCCGAACGGAGGGAGTAGA 59.671 55.000 15.34 0.00 46.06 2.59
5668 7524 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
5669 7525 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
5670 7526 1.856629 TAATTCCGAACGGAGGGAGT 58.143 50.000 15.34 4.12 46.06 3.85
5671 7527 3.470645 AATAATTCCGAACGGAGGGAG 57.529 47.619 15.34 0.00 46.06 4.30
5672 7528 3.054948 ACAAATAATTCCGAACGGAGGGA 60.055 43.478 15.34 2.49 46.06 4.20
5673 7529 3.275999 ACAAATAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
5674 7530 3.000925 CGACAAATAATTCCGAACGGAGG 59.999 47.826 15.34 4.52 46.06 4.30
5675 7531 3.543460 GCGACAAATAATTCCGAACGGAG 60.543 47.826 15.34 5.60 46.06 4.63
5676 7532 2.349275 GCGACAAATAATTCCGAACGGA 59.651 45.455 12.04 12.04 43.52 4.69
5677 7533 2.094575 TGCGACAAATAATTCCGAACGG 59.905 45.455 6.94 6.94 0.00 4.44
5678 7534 3.061563 TCTGCGACAAATAATTCCGAACG 59.938 43.478 0.00 0.00 0.00 3.95
5679 7535 4.593597 TCTGCGACAAATAATTCCGAAC 57.406 40.909 0.00 0.00 0.00 3.95
5680 7536 5.614923 TTTCTGCGACAAATAATTCCGAA 57.385 34.783 0.00 0.00 0.00 4.30
5681 7537 5.448496 CCATTTCTGCGACAAATAATTCCGA 60.448 40.000 0.00 0.00 0.00 4.55
5682 7538 4.734854 CCATTTCTGCGACAAATAATTCCG 59.265 41.667 0.00 0.00 0.00 4.30
5683 7539 5.890334 TCCATTTCTGCGACAAATAATTCC 58.110 37.500 0.00 0.00 0.00 3.01
5684 7540 6.974622 ACATCCATTTCTGCGACAAATAATTC 59.025 34.615 0.00 0.00 0.00 2.17
5685 7541 6.866480 ACATCCATTTCTGCGACAAATAATT 58.134 32.000 0.00 0.00 0.00 1.40
5686 7542 6.455360 ACATCCATTTCTGCGACAAATAAT 57.545 33.333 0.00 0.00 0.00 1.28
5687 7543 5.895636 ACATCCATTTCTGCGACAAATAA 57.104 34.783 0.00 0.00 0.00 1.40
5688 7544 6.992123 AGATACATCCATTTCTGCGACAAATA 59.008 34.615 0.00 0.00 0.00 1.40
5689 7545 5.824624 AGATACATCCATTTCTGCGACAAAT 59.175 36.000 0.00 0.00 0.00 2.32
5690 7546 5.185454 AGATACATCCATTTCTGCGACAAA 58.815 37.500 0.00 0.00 0.00 2.83
5691 7547 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
5692 7548 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
5693 7549 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
5694 7550 6.015095 ACATCTAGATACATCCATTTCTGCGA 60.015 38.462 4.54 0.00 0.00 5.10
5695 7551 6.162079 ACATCTAGATACATCCATTTCTGCG 58.838 40.000 4.54 0.00 0.00 5.18
5696 7552 9.664332 AATACATCTAGATACATCCATTTCTGC 57.336 33.333 4.54 0.00 0.00 4.26
5723 7579 9.967346 CTCGAAAATGGATGTATCTAGAACTAA 57.033 33.333 0.00 0.00 0.00 2.24
5724 7580 9.350951 TCTCGAAAATGGATGTATCTAGAACTA 57.649 33.333 0.00 0.00 0.00 2.24
5725 7581 8.138712 GTCTCGAAAATGGATGTATCTAGAACT 58.861 37.037 0.00 0.00 0.00 3.01
5726 7582 7.921214 TGTCTCGAAAATGGATGTATCTAGAAC 59.079 37.037 0.00 0.00 0.00 3.01
5727 7583 8.007405 TGTCTCGAAAATGGATGTATCTAGAA 57.993 34.615 0.00 0.00 0.00 2.10
5728 7584 7.582667 TGTCTCGAAAATGGATGTATCTAGA 57.417 36.000 0.00 0.00 0.00 2.43
5729 7585 7.923344 ACTTGTCTCGAAAATGGATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
5730 7586 7.782049 ACTTGTCTCGAAAATGGATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
5731 7587 6.644347 ACTTGTCTCGAAAATGGATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
5732 7588 6.910536 ACTTGTCTCGAAAATGGATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
5733 7589 8.964476 ATTACTTGTCTCGAAAATGGATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
5734 7590 8.786826 AATTACTTGTCTCGAAAATGGATGTA 57.213 30.769 0.00 0.00 0.00 2.29
5735 7591 7.148239 GGAATTACTTGTCTCGAAAATGGATGT 60.148 37.037 0.00 0.00 0.00 3.06
5736 7592 7.189512 GGAATTACTTGTCTCGAAAATGGATG 58.810 38.462 0.00 0.00 0.00 3.51
5737 7593 6.037172 CGGAATTACTTGTCTCGAAAATGGAT 59.963 38.462 0.00 0.00 0.00 3.41
5738 7594 5.350365 CGGAATTACTTGTCTCGAAAATGGA 59.650 40.000 0.00 0.00 0.00 3.41
5739 7595 5.350365 TCGGAATTACTTGTCTCGAAAATGG 59.650 40.000 0.00 0.00 0.00 3.16
5740 7596 6.403333 TCGGAATTACTTGTCTCGAAAATG 57.597 37.500 0.00 0.00 0.00 2.32
5741 7597 6.400727 CGTTCGGAATTACTTGTCTCGAAAAT 60.401 38.462 0.00 0.00 37.00 1.82
5742 7598 5.107760 CGTTCGGAATTACTTGTCTCGAAAA 60.108 40.000 0.00 0.00 37.00 2.29
5743 7599 4.383649 CGTTCGGAATTACTTGTCTCGAAA 59.616 41.667 0.00 0.00 37.00 3.46
5744 7600 3.916172 CGTTCGGAATTACTTGTCTCGAA 59.084 43.478 0.00 0.00 33.66 3.71
5745 7601 3.495193 CGTTCGGAATTACTTGTCTCGA 58.505 45.455 0.00 0.00 0.00 4.04
5746 7602 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
5747 7603 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
5748 7604 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
5749 7605 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
5750 7606 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
5751 7607 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
5752 7608 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
5753 7609 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
5754 7610 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
5755 7611 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
5756 7612 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
5757 7613 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
5758 7614 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
5759 7615 2.734755 TAATACTCCCTCCGTTCGGA 57.265 50.000 13.34 13.34 0.00 4.55
5760 7616 4.332428 AAATAATACTCCCTCCGTTCGG 57.668 45.455 4.74 4.74 0.00 4.30
5761 7617 6.071503 AGGATAAATAATACTCCCTCCGTTCG 60.072 42.308 0.00 0.00 0.00 3.95
5762 7618 7.039223 TGAGGATAAATAATACTCCCTCCGTTC 60.039 40.741 0.00 0.00 44.14 3.95
5763 7619 6.785963 TGAGGATAAATAATACTCCCTCCGTT 59.214 38.462 0.00 0.00 44.14 4.44
5764 7620 6.320518 TGAGGATAAATAATACTCCCTCCGT 58.679 40.000 0.00 0.00 44.14 4.69
5765 7621 6.852420 TGAGGATAAATAATACTCCCTCCG 57.148 41.667 0.00 0.00 44.14 4.63
5766 7622 8.929487 CCTATGAGGATAAATAATACTCCCTCC 58.071 40.741 0.00 0.00 44.14 4.30
5767 7623 9.716556 TCCTATGAGGATAAATAATACTCCCTC 57.283 37.037 0.00 0.00 44.14 4.30
5827 7683 4.367450 TGAAAAGGTTTGATCTTTTGCCG 58.633 39.130 3.82 0.00 42.40 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.