Multiple sequence alignment - TraesCS7A01G147800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G147800 chr7A 100.000 3571 0 0 1 3571 100725150 100721580 0.000000e+00 6595
1 TraesCS7A01G147800 chr7A 81.654 387 34 18 113 492 100756789 100756433 1.620000e-73 287
2 TraesCS7A01G147800 chr7B 88.780 3155 182 66 1 3071 53637195 53634129 0.000000e+00 3707
3 TraesCS7A01G147800 chr7B 87.437 398 21 14 2978 3358 53634290 53633905 7.080000e-117 431
4 TraesCS7A01G147800 chr7B 79.713 557 52 29 2 502 53642790 53642239 2.640000e-91 346
5 TraesCS7A01G147800 chr7D 87.989 3247 174 80 2 3147 98627301 98624170 0.000000e+00 3637
6 TraesCS7A01G147800 chr7D 80.973 473 38 19 2912 3358 98624334 98623888 9.560000e-86 327
7 TraesCS7A01G147800 chr7D 81.205 415 31 17 113 492 98634314 98633912 1.250000e-74 291
8 TraesCS7A01G147800 chr7D 90.598 117 6 4 2912 3024 98624259 98624144 2.220000e-32 150
9 TraesCS7A01G147800 chr1D 82.524 206 17 14 3038 3238 473752896 473752705 2.850000e-36 163
10 TraesCS7A01G147800 chr2D 82.126 207 15 17 3038 3238 593411948 593412138 1.330000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G147800 chr7A 100721580 100725150 3570 True 6595.000000 6595 100.0000 1 3571 1 chr7A.!!$R1 3570
1 TraesCS7A01G147800 chr7B 53633905 53637195 3290 True 2069.000000 3707 88.1085 1 3358 2 chr7B.!!$R2 3357
2 TraesCS7A01G147800 chr7B 53642239 53642790 551 True 346.000000 346 79.7130 2 502 1 chr7B.!!$R1 500
3 TraesCS7A01G147800 chr7D 98623888 98627301 3413 True 1371.333333 3637 86.5200 2 3358 3 chr7D.!!$R2 3356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1058 0.321653 CACCTACGGGAAGCAAGCTT 60.322 55.0 7.07 7.07 39.23 3.74 F
1556 1653 0.447801 AATGATCGTTGGACTTGCGC 59.552 50.0 0.00 0.00 0.00 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 2107 0.299895 CTCGATCGTACTACGTGCGT 59.700 55.0 15.94 2.05 43.14 5.24 R
3429 3725 0.179124 ATCAAGAGAAGCCGCTCGTC 60.179 55.0 0.00 0.00 39.87 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.446719 GGCTTTGTTCTTCTTTGCATCTTG 59.553 41.667 0.00 0.00 0.00 3.02
57 58 2.665519 GCACAAAGCGTCCATGTGTTAG 60.666 50.000 6.95 0.00 44.79 2.34
95 99 3.790437 CTGATCGGTGCCCCTGCT 61.790 66.667 0.00 0.00 38.71 4.24
96 100 4.100084 TGATCGGTGCCCCTGCTG 62.100 66.667 0.00 0.00 38.71 4.41
106 110 2.599578 CCCTGCTGCACTGCCTTT 60.600 61.111 0.00 0.00 0.00 3.11
107 111 2.633509 CCCTGCTGCACTGCCTTTC 61.634 63.158 0.00 0.00 0.00 2.62
108 112 2.633509 CCTGCTGCACTGCCTTTCC 61.634 63.158 0.00 0.00 0.00 3.13
109 113 2.598394 TGCTGCACTGCCTTTCCC 60.598 61.111 0.00 0.00 0.00 3.97
165 182 2.193248 GGACATAGTGCCAGGCCC 59.807 66.667 9.64 0.00 0.00 5.80
299 342 0.830648 CACTATTCCCTCCCGCAGAA 59.169 55.000 0.00 0.00 0.00 3.02
300 343 1.209504 CACTATTCCCTCCCGCAGAAA 59.790 52.381 0.00 0.00 0.00 2.52
464 543 6.365247 CAGAATCACAGCTTCCATTTCAAAAG 59.635 38.462 0.00 0.00 0.00 2.27
515 594 3.502455 CGGCGTCAGTGCATGCAT 61.502 61.111 25.64 10.23 36.28 3.96
516 595 2.101575 GGCGTCAGTGCATGCATG 59.898 61.111 25.64 22.70 36.28 4.06
533 612 1.266989 CATGCATGCTCATACCTGCAG 59.733 52.381 20.33 6.78 46.67 4.41
604 683 3.508840 CGCCCCCGCACTCAATTC 61.509 66.667 0.00 0.00 34.03 2.17
637 716 4.254492 GCTTTCAGTTAAGGTACCTCCAG 58.746 47.826 16.64 4.22 39.02 3.86
638 717 4.262938 GCTTTCAGTTAAGGTACCTCCAGT 60.263 45.833 16.64 4.78 39.02 4.00
639 718 5.046807 GCTTTCAGTTAAGGTACCTCCAGTA 60.047 44.000 16.64 0.11 39.02 2.74
702 781 2.203294 ACGATTAATGGCGCCCCC 60.203 61.111 26.77 5.36 0.00 5.40
703 782 3.353836 CGATTAATGGCGCCCCCG 61.354 66.667 26.77 13.91 35.87 5.73
743 822 2.201022 ATTAGCTCGATCCGGCCGT 61.201 57.895 26.12 6.07 0.00 5.68
756 835 1.883021 GGCCGTGCTGCACTTAATT 59.117 52.632 28.04 0.00 31.34 1.40
776 855 3.608316 TGGGGCTATTTTTGAATGTGC 57.392 42.857 0.00 0.00 0.00 4.57
777 856 2.094286 TGGGGCTATTTTTGAATGTGCG 60.094 45.455 0.00 0.00 0.00 5.34
781 860 3.500982 GCTATTTTTGAATGTGCGCTGA 58.499 40.909 9.73 0.00 0.00 4.26
823 902 2.966309 GCCGGTGCTCTTTGTTCGG 61.966 63.158 1.90 0.00 40.33 4.30
824 903 2.556287 CGGTGCTCTTTGTTCGGC 59.444 61.111 0.00 0.00 0.00 5.54
832 918 2.547218 GCTCTTTGTTCGGCCGGATATA 60.547 50.000 27.83 9.54 0.00 0.86
834 920 2.140717 CTTTGTTCGGCCGGATATACC 58.859 52.381 27.83 4.32 0.00 2.73
838 924 1.823169 TTCGGCCGGATATACCCTGC 61.823 60.000 27.83 0.00 34.64 4.85
843 929 1.618888 GCCGGATATACCCTGCTCCTA 60.619 57.143 5.05 0.00 34.64 2.94
846 932 3.432378 CGGATATACCCTGCTCCTAGTT 58.568 50.000 0.00 0.00 34.64 2.24
852 938 1.044611 CCCTGCTCCTAGTTCTAGCC 58.955 60.000 1.68 0.00 35.33 3.93
867 953 5.958987 AGTTCTAGCCGCCTCCTATAAATAT 59.041 40.000 0.00 0.00 0.00 1.28
874 960 2.822764 CCTCCTATAAATATCGGGCGC 58.177 52.381 0.00 0.00 0.00 6.53
931 1017 0.472471 GAATTACCCATCTCCCGCCA 59.528 55.000 0.00 0.00 0.00 5.69
951 1037 4.394712 CGCACCCACCTCCCACTC 62.395 72.222 0.00 0.00 0.00 3.51
972 1058 0.321653 CACCTACGGGAAGCAAGCTT 60.322 55.000 7.07 7.07 39.23 3.74
975 1061 1.066430 CCTACGGGAAGCAAGCTTGTA 60.066 52.381 26.55 9.12 36.26 2.41
978 1064 2.084546 ACGGGAAGCAAGCTTGTAATC 58.915 47.619 26.55 20.22 36.26 1.75
984 1070 1.557832 AGCAAGCTTGTAATCGGGGTA 59.442 47.619 26.55 0.00 0.00 3.69
992 1078 3.235157 TGTAATCGGGGTAACGAACTG 57.765 47.619 0.00 0.00 46.92 3.16
1023 1109 2.210961 GCCCGTTTAGTTAGAGATGGC 58.789 52.381 0.00 0.00 0.00 4.40
1056 1142 3.706373 GTGGCGGCTCTGGAGGAA 61.706 66.667 11.43 0.00 0.00 3.36
1122 1208 2.258591 GCGCTGTCTTCCTCGTCA 59.741 61.111 0.00 0.00 0.00 4.35
1146 1232 4.147449 TCCATCCGTGCGCTCCTG 62.147 66.667 9.73 1.64 0.00 3.86
1316 1411 1.442520 CGTCCGTCGGCGAAAGTAA 60.443 57.895 12.93 0.00 41.33 2.24
1386 1481 4.083862 GTCGGCTCCACCAGGGTC 62.084 72.222 0.00 0.00 39.03 4.46
1450 1545 2.625790 CGGAGCTCTCTAGGTAATTGCT 59.374 50.000 14.64 0.00 32.30 3.91
1516 1611 6.709397 AGCGATTAGATGATGATGTTGATGTT 59.291 34.615 0.00 0.00 0.00 2.71
1517 1612 6.795593 GCGATTAGATGATGATGTTGATGTTG 59.204 38.462 0.00 0.00 0.00 3.33
1518 1613 7.307573 GCGATTAGATGATGATGTTGATGTTGA 60.308 37.037 0.00 0.00 0.00 3.18
1519 1614 8.718734 CGATTAGATGATGATGTTGATGTTGAT 58.281 33.333 0.00 0.00 0.00 2.57
1520 1615 9.827411 GATTAGATGATGATGTTGATGTTGATG 57.173 33.333 0.00 0.00 0.00 3.07
1521 1616 8.741603 TTAGATGATGATGTTGATGTTGATGT 57.258 30.769 0.00 0.00 0.00 3.06
1531 1626 4.944962 TGATGTTGATGTTGATCGGAAC 57.055 40.909 0.00 0.00 0.00 3.62
1555 1652 1.731709 TGAATGATCGTTGGACTTGCG 59.268 47.619 4.51 0.00 0.00 4.85
1556 1653 0.447801 AATGATCGTTGGACTTGCGC 59.552 50.000 0.00 0.00 0.00 6.09
1577 1674 0.540133 TGCATGCAGGCAGGAAGAAA 60.540 50.000 24.07 0.00 39.25 2.52
1598 1695 1.395826 CGGAGGAGGAGGTGATGTCC 61.396 65.000 0.00 0.00 0.00 4.02
1710 1807 2.024871 CGCTCGTGTCGGAGATCC 59.975 66.667 0.00 0.00 40.67 3.36
1820 1917 0.982852 TGATCAAGGACCCCATCGCT 60.983 55.000 0.00 0.00 0.00 4.93
1931 2028 0.687757 ACAAGATGGAGGCCGAGCTA 60.688 55.000 0.00 0.00 0.00 3.32
1935 2032 2.093537 GATGGAGGCCGAGCTACAGG 62.094 65.000 0.00 0.00 0.00 4.00
2006 2103 2.508663 GGGCTCGAGGCACGTAAC 60.509 66.667 36.07 16.95 44.01 2.50
2007 2104 2.879462 GGCTCGAGGCACGTAACG 60.879 66.667 31.94 0.00 44.01 3.18
2008 2105 2.126580 GCTCGAGGCACGTAACGT 60.127 61.111 15.58 0.00 42.36 3.99
2009 2106 1.135315 GCTCGAGGCACGTAACGTA 59.865 57.895 15.58 0.00 38.32 3.57
2010 2107 0.454957 GCTCGAGGCACGTAACGTAA 60.455 55.000 15.58 0.00 38.32 3.18
2011 2108 1.253999 CTCGAGGCACGTAACGTAAC 58.746 55.000 3.91 0.00 38.32 2.50
2013 2110 1.698333 GAGGCACGTAACGTAACGC 59.302 57.895 0.00 0.00 46.71 4.84
2014 2111 1.003262 GAGGCACGTAACGTAACGCA 61.003 55.000 0.00 0.00 46.71 5.24
2015 2112 1.128412 GGCACGTAACGTAACGCAC 59.872 57.895 0.00 0.00 46.71 5.34
2088 2210 2.440065 GCATGCATCCCGTTCCCA 60.440 61.111 14.21 0.00 0.00 4.37
2286 2427 1.152839 GAGGACGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
2287 2428 1.619975 AGGACGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
2288 2429 1.152839 GGACGAGGAGGAGGAGGAG 60.153 68.421 0.00 0.00 0.00 3.69
2289 2430 1.152839 GACGAGGAGGAGGAGGAGG 60.153 68.421 0.00 0.00 0.00 4.30
2290 2431 1.619975 ACGAGGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
2291 2432 0.996762 ACGAGGAGGAGGAGGAGGAT 60.997 60.000 0.00 0.00 0.00 3.24
2297 2438 0.560688 AGGAGGAGGAGGATGAGGAC 59.439 60.000 0.00 0.00 0.00 3.85
2312 2453 4.748679 GACGACGACGACGGTGGG 62.749 72.222 22.36 0.27 44.46 4.61
2574 2715 0.872021 CGAGGCAGTCCGATAAGCAC 60.872 60.000 0.00 0.00 37.47 4.40
2599 2746 1.591594 ACGCGTGTGTCAGTTCTGG 60.592 57.895 12.93 0.00 0.00 3.86
2629 2777 4.498520 GTGGCAGCTCGCTCGCTA 62.499 66.667 7.85 4.91 38.41 4.26
2630 2778 4.198890 TGGCAGCTCGCTCGCTAG 62.199 66.667 7.85 0.00 38.41 3.42
2675 2823 1.075482 ATGTCAGGGTGGGCAGTTG 59.925 57.895 0.00 0.00 0.00 3.16
2686 2834 2.421314 GCAGTTGGGGTTTGTGGC 59.579 61.111 0.00 0.00 0.00 5.01
2695 2844 3.056328 GTTTGTGGCGGGAGAGGC 61.056 66.667 0.00 0.00 37.19 4.70
2703 2855 2.756283 CGGGAGAGGCGAGGTCTT 60.756 66.667 0.00 0.00 0.00 3.01
2705 2857 2.726351 GGGAGAGGCGAGGTCTTGG 61.726 68.421 0.00 0.00 0.00 3.61
2707 2859 1.682684 GAGAGGCGAGGTCTTGGGA 60.683 63.158 0.00 0.00 0.00 4.37
2750 2902 4.795970 GTGTTAATAACAGCTCCCGATG 57.204 45.455 6.03 0.00 43.10 3.84
2795 2958 1.227497 GCTCAGAGATGGCGGGAAG 60.227 63.158 0.00 0.00 0.00 3.46
2798 2962 2.066393 CAGAGATGGCGGGAAGGGA 61.066 63.158 0.00 0.00 0.00 4.20
2799 2963 1.074167 AGAGATGGCGGGAAGGGAT 60.074 57.895 0.00 0.00 0.00 3.85
2800 2964 1.072159 GAGATGGCGGGAAGGGATG 59.928 63.158 0.00 0.00 0.00 3.51
2801 2965 1.694169 AGATGGCGGGAAGGGATGT 60.694 57.895 0.00 0.00 0.00 3.06
2802 2966 0.399949 AGATGGCGGGAAGGGATGTA 60.400 55.000 0.00 0.00 0.00 2.29
2809 2973 2.819284 GGAAGGGATGTAGGGGGCG 61.819 68.421 0.00 0.00 0.00 6.13
2810 2974 2.042261 AAGGGATGTAGGGGGCGT 59.958 61.111 0.00 0.00 0.00 5.68
2815 2979 0.323087 GGATGTAGGGGGCGTGTTTT 60.323 55.000 0.00 0.00 0.00 2.43
2817 2981 0.610785 ATGTAGGGGGCGTGTTTTGG 60.611 55.000 0.00 0.00 0.00 3.28
2818 2982 2.282603 TAGGGGGCGTGTTTTGGC 60.283 61.111 0.00 0.00 0.00 4.52
2823 2987 3.597728 GGCGTGTTTTGGCGGGAA 61.598 61.111 0.00 0.00 0.00 3.97
2824 2988 2.413765 GCGTGTTTTGGCGGGAAA 59.586 55.556 0.00 0.00 0.00 3.13
2841 3010 2.884997 AAAGGCGTGTGTGGTCTGCA 62.885 55.000 0.00 0.00 0.00 4.41
2895 3080 2.036992 TGCCCGATTGATTGCTTGTTTT 59.963 40.909 0.00 0.00 0.00 2.43
2907 3169 2.495270 TGCTTGTTTTGTTCTGCTTCCA 59.505 40.909 0.00 0.00 0.00 3.53
2908 3170 3.118542 GCTTGTTTTGTTCTGCTTCCAG 58.881 45.455 0.00 0.00 40.54 3.86
2909 3171 3.181487 GCTTGTTTTGTTCTGCTTCCAGA 60.181 43.478 0.00 0.00 46.03 3.86
2930 3192 4.457257 AGAAAAATTCTGCGAGGGAAAGAG 59.543 41.667 0.00 0.00 38.91 2.85
2943 3205 0.538746 GAAAGAGAAACCGGGGCCAA 60.539 55.000 6.32 0.00 0.00 4.52
2949 3211 0.826256 GAAACCGGGGCCAAGTTTCT 60.826 55.000 29.21 11.11 43.77 2.52
2955 3224 1.202348 CGGGGCCAAGTTTCTGAATTC 59.798 52.381 4.39 0.00 0.00 2.17
2963 3232 4.153117 CCAAGTTTCTGAATTCGGTCTGAG 59.847 45.833 13.95 0.00 0.00 3.35
2969 3238 1.285578 GAATTCGGTCTGAGCTCTGC 58.714 55.000 16.19 10.40 0.00 4.26
3043 3312 0.250038 TGGTCTGAGCTCTGTTGTGC 60.250 55.000 16.19 4.70 0.00 4.57
3090 3359 3.662759 AAAGAACTGGACCTGGTTTCA 57.337 42.857 0.00 2.13 0.00 2.69
3113 3382 4.561105 GAATTCGGTCTGAAGTCTGAACT 58.439 43.478 13.40 0.00 45.74 3.01
3114 3383 3.644884 TTCGGTCTGAAGTCTGAACTC 57.355 47.619 2.33 0.00 33.48 3.01
3115 3384 2.865079 TCGGTCTGAAGTCTGAACTCT 58.135 47.619 2.33 0.00 33.48 3.24
3116 3385 2.554462 TCGGTCTGAAGTCTGAACTCTG 59.446 50.000 2.33 0.00 33.48 3.35
3117 3386 2.294791 CGGTCTGAAGTCTGAACTCTGT 59.705 50.000 2.33 0.00 33.48 3.41
3118 3387 3.243569 CGGTCTGAAGTCTGAACTCTGTT 60.244 47.826 2.33 0.00 33.48 3.16
3119 3388 4.303282 GGTCTGAAGTCTGAACTCTGTTC 58.697 47.826 3.74 3.74 33.48 3.18
3120 3389 4.038642 GGTCTGAAGTCTGAACTCTGTTCT 59.961 45.833 11.06 0.00 33.48 3.01
3121 3390 4.981674 GTCTGAAGTCTGAACTCTGTTCTG 59.018 45.833 11.06 10.45 33.48 3.02
3122 3391 4.889995 TCTGAAGTCTGAACTCTGTTCTGA 59.110 41.667 13.39 13.39 33.48 3.27
3124 3393 6.717084 TCTGAAGTCTGAACTCTGTTCTGATA 59.283 38.462 18.09 8.60 33.48 2.15
3132 3401 8.156820 TCTGAACTCTGTTCTGATATTCCAAAA 58.843 33.333 13.39 0.00 0.00 2.44
3143 3412 2.165357 ATTCCAAAATCTGGGAGGGC 57.835 50.000 0.00 0.00 46.44 5.19
3194 3468 4.878397 AGTACATTATCTTGAGCAGCAACC 59.122 41.667 0.00 0.00 31.96 3.77
3206 3480 0.389817 CAGCAACCGTCCGATTCTGA 60.390 55.000 0.00 0.00 0.00 3.27
3298 3585 3.135994 GGGCGTTAGAAAAACTGACAGA 58.864 45.455 10.08 0.00 35.26 3.41
3299 3586 3.059120 GGGCGTTAGAAAAACTGACAGAC 60.059 47.826 10.08 0.00 35.26 3.51
3302 3589 3.244345 CGTTAGAAAAACTGACAGACGCA 59.756 43.478 10.08 0.00 35.26 5.24
3325 3617 6.183360 GCAGCAGTAACAGTGGTAAGAAATAG 60.183 42.308 0.00 0.00 0.00 1.73
3326 3618 7.097192 CAGCAGTAACAGTGGTAAGAAATAGA 58.903 38.462 0.00 0.00 0.00 1.98
3358 3654 1.601759 GCTCTTCCCAGTGCTTGCA 60.602 57.895 0.00 0.00 36.71 4.08
3359 3655 1.860484 GCTCTTCCCAGTGCTTGCAC 61.860 60.000 16.98 16.98 36.71 4.57
3360 3656 1.228245 TCTTCCCAGTGCTTGCACC 60.228 57.895 20.39 4.86 0.00 5.01
3361 3657 2.203480 TTCCCAGTGCTTGCACCC 60.203 61.111 20.39 0.00 0.00 4.61
3362 3658 3.808218 TTCCCAGTGCTTGCACCCC 62.808 63.158 20.39 0.00 0.00 4.95
3364 3660 4.290622 CCAGTGCTTGCACCCCCT 62.291 66.667 20.39 0.99 0.00 4.79
3365 3661 2.203538 CAGTGCTTGCACCCCCTT 60.204 61.111 20.39 0.62 0.00 3.95
3366 3662 2.116125 AGTGCTTGCACCCCCTTC 59.884 61.111 20.39 0.00 0.00 3.46
3367 3663 2.203480 GTGCTTGCACCCCCTTCA 60.203 61.111 14.17 0.00 0.00 3.02
3368 3664 1.607467 GTGCTTGCACCCCCTTCAT 60.607 57.895 14.17 0.00 0.00 2.57
3369 3665 1.304381 TGCTTGCACCCCCTTCATC 60.304 57.895 0.00 0.00 0.00 2.92
3370 3666 1.304381 GCTTGCACCCCCTTCATCA 60.304 57.895 0.00 0.00 0.00 3.07
3371 3667 0.685458 GCTTGCACCCCCTTCATCAT 60.685 55.000 0.00 0.00 0.00 2.45
3372 3668 1.410083 GCTTGCACCCCCTTCATCATA 60.410 52.381 0.00 0.00 0.00 2.15
3373 3669 2.579873 CTTGCACCCCCTTCATCATAG 58.420 52.381 0.00 0.00 0.00 2.23
3374 3670 1.595311 TGCACCCCCTTCATCATAGT 58.405 50.000 0.00 0.00 0.00 2.12
3375 3671 1.922447 TGCACCCCCTTCATCATAGTT 59.078 47.619 0.00 0.00 0.00 2.24
3376 3672 2.092429 TGCACCCCCTTCATCATAGTTC 60.092 50.000 0.00 0.00 0.00 3.01
3377 3673 2.092429 GCACCCCCTTCATCATAGTTCA 60.092 50.000 0.00 0.00 0.00 3.18
3378 3674 3.435601 GCACCCCCTTCATCATAGTTCAT 60.436 47.826 0.00 0.00 0.00 2.57
3379 3675 4.202461 GCACCCCCTTCATCATAGTTCATA 60.202 45.833 0.00 0.00 0.00 2.15
3380 3676 5.308825 CACCCCCTTCATCATAGTTCATAC 58.691 45.833 0.00 0.00 0.00 2.39
3381 3677 5.072329 CACCCCCTTCATCATAGTTCATACT 59.928 44.000 0.00 0.00 38.44 2.12
3382 3678 5.072329 ACCCCCTTCATCATAGTTCATACTG 59.928 44.000 0.00 0.00 35.78 2.74
3383 3679 5.307976 CCCCCTTCATCATAGTTCATACTGA 59.692 44.000 0.00 0.00 35.78 3.41
3384 3680 6.013032 CCCCCTTCATCATAGTTCATACTGAT 60.013 42.308 0.00 0.00 35.78 2.90
3385 3681 7.102346 CCCCTTCATCATAGTTCATACTGATC 58.898 42.308 0.00 0.00 35.78 2.92
3386 3682 7.102346 CCCTTCATCATAGTTCATACTGATCC 58.898 42.308 0.00 0.00 35.78 3.36
3387 3683 7.038445 CCCTTCATCATAGTTCATACTGATCCT 60.038 40.741 0.00 0.00 35.78 3.24
3388 3684 8.034215 CCTTCATCATAGTTCATACTGATCCTC 58.966 40.741 0.00 0.00 35.78 3.71
3389 3685 8.482852 TTCATCATAGTTCATACTGATCCTCA 57.517 34.615 0.00 0.00 35.78 3.86
3390 3686 8.482852 TCATCATAGTTCATACTGATCCTCAA 57.517 34.615 0.00 0.00 35.78 3.02
3391 3687 8.927411 TCATCATAGTTCATACTGATCCTCAAA 58.073 33.333 0.00 0.00 35.78 2.69
3392 3688 9.551734 CATCATAGTTCATACTGATCCTCAAAA 57.448 33.333 0.00 0.00 35.78 2.44
3417 3713 6.987403 AAAAAGTTTAACCCCTAGCAATGA 57.013 33.333 0.00 0.00 0.00 2.57
3418 3714 6.987403 AAAAGTTTAACCCCTAGCAATGAA 57.013 33.333 0.00 0.00 0.00 2.57
3419 3715 6.987403 AAAGTTTAACCCCTAGCAATGAAA 57.013 33.333 0.00 0.00 0.00 2.69
3420 3716 6.987403 AAGTTTAACCCCTAGCAATGAAAA 57.013 33.333 0.00 0.00 0.00 2.29
3421 3717 6.987403 AGTTTAACCCCTAGCAATGAAAAA 57.013 33.333 0.00 0.00 0.00 1.94
3422 3718 6.755206 AGTTTAACCCCTAGCAATGAAAAAC 58.245 36.000 0.00 0.00 0.00 2.43
3423 3719 6.325286 AGTTTAACCCCTAGCAATGAAAAACA 59.675 34.615 0.00 0.00 0.00 2.83
3424 3720 4.871933 AACCCCTAGCAATGAAAAACAG 57.128 40.909 0.00 0.00 0.00 3.16
3425 3721 2.562738 ACCCCTAGCAATGAAAAACAGC 59.437 45.455 0.00 0.00 0.00 4.40
3426 3722 2.827921 CCCCTAGCAATGAAAAACAGCT 59.172 45.455 0.00 0.00 39.22 4.24
3427 3723 3.367703 CCCCTAGCAATGAAAAACAGCTG 60.368 47.826 13.48 13.48 36.80 4.24
3428 3724 3.367703 CCCTAGCAATGAAAAACAGCTGG 60.368 47.826 19.93 0.00 36.80 4.85
3429 3725 2.825861 AGCAATGAAAAACAGCTGGG 57.174 45.000 19.93 0.00 33.67 4.45
3430 3726 2.318908 AGCAATGAAAAACAGCTGGGA 58.681 42.857 19.93 0.00 33.67 4.37
3431 3727 2.036346 AGCAATGAAAAACAGCTGGGAC 59.964 45.455 19.93 5.27 33.67 4.46
3432 3728 2.664916 CAATGAAAAACAGCTGGGACG 58.335 47.619 19.93 0.00 0.00 4.79
3433 3729 2.270352 ATGAAAAACAGCTGGGACGA 57.730 45.000 19.93 0.00 0.00 4.20
3434 3730 1.593196 TGAAAAACAGCTGGGACGAG 58.407 50.000 19.93 0.00 0.00 4.18
3435 3731 0.238553 GAAAAACAGCTGGGACGAGC 59.761 55.000 19.93 0.00 39.46 5.03
3436 3732 1.507141 AAAAACAGCTGGGACGAGCG 61.507 55.000 19.93 0.00 44.24 5.03
3437 3733 3.883744 AAACAGCTGGGACGAGCGG 62.884 63.158 19.93 5.08 44.24 5.52
3442 3738 3.764466 CTGGGACGAGCGGCTTCT 61.764 66.667 2.97 0.00 0.00 2.85
3443 3739 3.708220 CTGGGACGAGCGGCTTCTC 62.708 68.421 2.97 0.00 0.00 2.87
3444 3740 3.453679 GGGACGAGCGGCTTCTCT 61.454 66.667 2.97 0.00 0.00 3.10
3445 3741 2.574399 GGACGAGCGGCTTCTCTT 59.426 61.111 2.97 0.00 0.00 2.85
3446 3742 1.807573 GGACGAGCGGCTTCTCTTG 60.808 63.158 2.97 0.00 0.00 3.02
3447 3743 1.213013 GACGAGCGGCTTCTCTTGA 59.787 57.895 2.97 0.00 0.00 3.02
3448 3744 0.179124 GACGAGCGGCTTCTCTTGAT 60.179 55.000 2.97 0.00 0.00 2.57
3449 3745 0.179124 ACGAGCGGCTTCTCTTGATC 60.179 55.000 2.97 0.00 0.00 2.92
3450 3746 1.205485 CGAGCGGCTTCTCTTGATCG 61.205 60.000 2.97 0.00 0.00 3.69
3451 3747 1.486644 GAGCGGCTTCTCTTGATCGC 61.487 60.000 2.97 0.00 42.91 4.58
3452 3748 1.520342 GCGGCTTCTCTTGATCGCT 60.520 57.895 0.00 0.00 40.00 4.93
3453 3749 0.249073 GCGGCTTCTCTTGATCGCTA 60.249 55.000 0.00 0.00 40.00 4.26
3454 3750 1.802880 GCGGCTTCTCTTGATCGCTAA 60.803 52.381 0.00 0.00 40.00 3.09
3455 3751 2.748605 CGGCTTCTCTTGATCGCTAAT 58.251 47.619 0.00 0.00 0.00 1.73
3456 3752 2.728839 CGGCTTCTCTTGATCGCTAATC 59.271 50.000 0.00 0.00 34.72 1.75
3457 3753 3.551863 CGGCTTCTCTTGATCGCTAATCT 60.552 47.826 0.00 0.00 35.24 2.40
3458 3754 4.320567 CGGCTTCTCTTGATCGCTAATCTA 60.321 45.833 0.00 0.00 35.24 1.98
3459 3755 5.621104 CGGCTTCTCTTGATCGCTAATCTAT 60.621 44.000 0.00 0.00 35.24 1.98
3460 3756 5.576384 GGCTTCTCTTGATCGCTAATCTATG 59.424 44.000 0.00 0.00 35.24 2.23
3461 3757 5.062058 GCTTCTCTTGATCGCTAATCTATGC 59.938 44.000 0.00 0.00 35.24 3.14
3462 3758 5.065704 TCTCTTGATCGCTAATCTATGCC 57.934 43.478 0.00 0.00 35.24 4.40
3463 3759 4.081972 TCTCTTGATCGCTAATCTATGCCC 60.082 45.833 0.00 0.00 35.24 5.36
3464 3760 3.834813 TCTTGATCGCTAATCTATGCCCT 59.165 43.478 0.00 0.00 35.24 5.19
3465 3761 3.599730 TGATCGCTAATCTATGCCCTG 57.400 47.619 0.00 0.00 35.24 4.45
3466 3762 2.899900 TGATCGCTAATCTATGCCCTGT 59.100 45.455 0.00 0.00 35.24 4.00
3467 3763 3.324846 TGATCGCTAATCTATGCCCTGTT 59.675 43.478 0.00 0.00 35.24 3.16
3468 3764 3.111853 TCGCTAATCTATGCCCTGTTG 57.888 47.619 0.00 0.00 0.00 3.33
3469 3765 2.434336 TCGCTAATCTATGCCCTGTTGT 59.566 45.455 0.00 0.00 0.00 3.32
3470 3766 2.545526 CGCTAATCTATGCCCTGTTGTG 59.454 50.000 0.00 0.00 0.00 3.33
3471 3767 3.741075 CGCTAATCTATGCCCTGTTGTGA 60.741 47.826 0.00 0.00 0.00 3.58
3472 3768 4.392940 GCTAATCTATGCCCTGTTGTGAT 58.607 43.478 0.00 0.00 0.00 3.06
3473 3769 4.823989 GCTAATCTATGCCCTGTTGTGATT 59.176 41.667 0.00 0.00 0.00 2.57
3474 3770 5.300286 GCTAATCTATGCCCTGTTGTGATTT 59.700 40.000 0.00 0.00 0.00 2.17
3475 3771 5.587388 AATCTATGCCCTGTTGTGATTTG 57.413 39.130 0.00 0.00 0.00 2.32
3476 3772 4.032960 TCTATGCCCTGTTGTGATTTGT 57.967 40.909 0.00 0.00 0.00 2.83
3477 3773 3.758023 TCTATGCCCTGTTGTGATTTGTG 59.242 43.478 0.00 0.00 0.00 3.33
3478 3774 1.774110 TGCCCTGTTGTGATTTGTGT 58.226 45.000 0.00 0.00 0.00 3.72
3479 3775 2.106566 TGCCCTGTTGTGATTTGTGTT 58.893 42.857 0.00 0.00 0.00 3.32
3480 3776 2.159128 TGCCCTGTTGTGATTTGTGTTG 60.159 45.455 0.00 0.00 0.00 3.33
3481 3777 2.802774 GCCCTGTTGTGATTTGTGTTGG 60.803 50.000 0.00 0.00 0.00 3.77
3482 3778 2.430332 CCCTGTTGTGATTTGTGTTGGT 59.570 45.455 0.00 0.00 0.00 3.67
3483 3779 3.446799 CCTGTTGTGATTTGTGTTGGTG 58.553 45.455 0.00 0.00 0.00 4.17
3484 3780 3.119173 CCTGTTGTGATTTGTGTTGGTGT 60.119 43.478 0.00 0.00 0.00 4.16
3485 3781 4.493547 CTGTTGTGATTTGTGTTGGTGTT 58.506 39.130 0.00 0.00 0.00 3.32
3486 3782 4.489810 TGTTGTGATTTGTGTTGGTGTTC 58.510 39.130 0.00 0.00 0.00 3.18
3487 3783 4.021981 TGTTGTGATTTGTGTTGGTGTTCA 60.022 37.500 0.00 0.00 0.00 3.18
3488 3784 4.103365 TGTGATTTGTGTTGGTGTTCAC 57.897 40.909 0.00 0.00 34.16 3.18
3489 3785 3.119316 TGTGATTTGTGTTGGTGTTCACC 60.119 43.478 14.31 14.31 32.94 4.02
3490 3786 3.092301 TGATTTGTGTTGGTGTTCACCA 58.908 40.909 19.12 19.12 38.14 4.17
3491 3787 3.119316 TGATTTGTGTTGGTGTTCACCAC 60.119 43.478 22.14 17.08 43.74 4.16
3492 3788 2.208132 TTGTGTTGGTGTTCACCACT 57.792 45.000 22.14 0.00 43.94 4.00
3493 3789 1.745232 TGTGTTGGTGTTCACCACTC 58.255 50.000 22.14 17.78 43.94 3.51
3494 3790 0.655733 GTGTTGGTGTTCACCACTCG 59.344 55.000 22.14 0.00 43.94 4.18
3495 3791 1.092921 TGTTGGTGTTCACCACTCGC 61.093 55.000 22.14 13.63 43.94 5.03
3496 3792 0.814010 GTTGGTGTTCACCACTCGCT 60.814 55.000 22.14 0.00 43.94 4.93
3497 3793 0.813610 TTGGTGTTCACCACTCGCTG 60.814 55.000 22.14 0.00 43.94 5.18
3499 3795 2.280797 TGTTCACCACTCGCTGGC 60.281 61.111 0.00 0.00 45.32 4.85
3500 3796 3.050275 GTTCACCACTCGCTGGCC 61.050 66.667 0.00 0.00 45.32 5.36
3501 3797 3.555324 TTCACCACTCGCTGGCCA 61.555 61.111 4.71 4.71 45.32 5.36
3502 3798 2.894257 TTCACCACTCGCTGGCCAT 61.894 57.895 5.51 0.00 45.32 4.40
3503 3799 2.803155 TTCACCACTCGCTGGCCATC 62.803 60.000 5.51 0.00 45.32 3.51
3504 3800 4.457496 ACCACTCGCTGGCCATCG 62.457 66.667 22.70 22.70 45.32 3.84
3505 3801 4.147449 CCACTCGCTGGCCATCGA 62.147 66.667 28.27 28.27 31.36 3.59
3506 3802 2.107750 CACTCGCTGGCCATCGAT 59.892 61.111 29.97 17.78 33.98 3.59
3507 3803 2.107750 ACTCGCTGGCCATCGATG 59.892 61.111 29.97 24.04 33.98 3.84
3508 3804 2.107750 CTCGCTGGCCATCGATGT 59.892 61.111 29.97 0.00 33.98 3.06
3509 3805 1.522355 CTCGCTGGCCATCGATGTT 60.522 57.895 29.97 0.00 33.98 2.71
3510 3806 1.769098 CTCGCTGGCCATCGATGTTG 61.769 60.000 29.97 15.82 33.98 3.33
3511 3807 2.410469 GCTGGCCATCGATGTTGC 59.590 61.111 23.27 19.24 0.00 4.17
3512 3808 2.117156 GCTGGCCATCGATGTTGCT 61.117 57.895 23.27 0.00 0.00 3.91
3513 3809 1.660560 GCTGGCCATCGATGTTGCTT 61.661 55.000 23.27 0.00 0.00 3.91
3514 3810 1.667236 CTGGCCATCGATGTTGCTTA 58.333 50.000 23.27 12.43 0.00 3.09
3515 3811 1.331756 CTGGCCATCGATGTTGCTTAC 59.668 52.381 23.27 9.00 0.00 2.34
3516 3812 0.663153 GGCCATCGATGTTGCTTACC 59.337 55.000 23.27 9.36 0.00 2.85
3517 3813 1.378531 GCCATCGATGTTGCTTACCA 58.621 50.000 23.27 0.00 0.00 3.25
3518 3814 1.742831 GCCATCGATGTTGCTTACCAA 59.257 47.619 23.27 0.00 0.00 3.67
3519 3815 2.223340 GCCATCGATGTTGCTTACCAAG 60.223 50.000 23.27 5.22 33.21 3.61
3528 3824 3.226884 GCTTACCAAGCGAGGTTCA 57.773 52.632 8.43 0.00 45.74 3.18
3529 3825 1.079503 GCTTACCAAGCGAGGTTCAG 58.920 55.000 8.43 6.75 45.74 3.02
3530 3826 1.337823 GCTTACCAAGCGAGGTTCAGA 60.338 52.381 8.43 0.00 45.74 3.27
3531 3827 2.611518 CTTACCAAGCGAGGTTCAGAG 58.388 52.381 8.43 0.04 43.08 3.35
3532 3828 1.629043 TACCAAGCGAGGTTCAGAGT 58.371 50.000 8.43 0.00 43.08 3.24
3533 3829 0.759346 ACCAAGCGAGGTTCAGAGTT 59.241 50.000 0.00 0.00 39.34 3.01
3534 3830 1.968493 ACCAAGCGAGGTTCAGAGTTA 59.032 47.619 0.00 0.00 39.34 2.24
3535 3831 2.567615 ACCAAGCGAGGTTCAGAGTTAT 59.432 45.455 0.00 0.00 39.34 1.89
3536 3832 3.767673 ACCAAGCGAGGTTCAGAGTTATA 59.232 43.478 0.00 0.00 39.34 0.98
3537 3833 4.142138 ACCAAGCGAGGTTCAGAGTTATAG 60.142 45.833 0.00 0.00 39.34 1.31
3538 3834 4.098044 CCAAGCGAGGTTCAGAGTTATAGA 59.902 45.833 0.00 0.00 0.00 1.98
3539 3835 5.221342 CCAAGCGAGGTTCAGAGTTATAGAT 60.221 44.000 0.00 0.00 0.00 1.98
3540 3836 5.446143 AGCGAGGTTCAGAGTTATAGATG 57.554 43.478 0.00 0.00 0.00 2.90
3541 3837 4.279671 AGCGAGGTTCAGAGTTATAGATGG 59.720 45.833 0.00 0.00 0.00 3.51
3542 3838 4.038162 GCGAGGTTCAGAGTTATAGATGGT 59.962 45.833 0.00 0.00 0.00 3.55
3543 3839 5.452077 GCGAGGTTCAGAGTTATAGATGGTT 60.452 44.000 0.00 0.00 0.00 3.67
3544 3840 6.210078 CGAGGTTCAGAGTTATAGATGGTTC 58.790 44.000 0.00 0.00 0.00 3.62
3545 3841 6.183360 CGAGGTTCAGAGTTATAGATGGTTCA 60.183 42.308 0.00 0.00 0.00 3.18
3546 3842 7.118496 AGGTTCAGAGTTATAGATGGTTCAG 57.882 40.000 0.00 0.00 0.00 3.02
3547 3843 6.098982 AGGTTCAGAGTTATAGATGGTTCAGG 59.901 42.308 0.00 0.00 0.00 3.86
3548 3844 6.127026 GGTTCAGAGTTATAGATGGTTCAGGT 60.127 42.308 0.00 0.00 0.00 4.00
3549 3845 6.716934 TCAGAGTTATAGATGGTTCAGGTC 57.283 41.667 0.00 0.00 0.00 3.85
3550 3846 6.436027 TCAGAGTTATAGATGGTTCAGGTCT 58.564 40.000 0.00 0.00 0.00 3.85
3551 3847 6.897966 TCAGAGTTATAGATGGTTCAGGTCTT 59.102 38.462 0.00 0.00 0.00 3.01
3552 3848 6.983307 CAGAGTTATAGATGGTTCAGGTCTTG 59.017 42.308 0.00 0.00 0.00 3.02
3553 3849 6.098982 AGAGTTATAGATGGTTCAGGTCTTGG 59.901 42.308 0.00 0.00 0.00 3.61
3554 3850 3.567478 ATAGATGGTTCAGGTCTTGGC 57.433 47.619 0.00 0.00 0.00 4.52
3555 3851 1.366319 AGATGGTTCAGGTCTTGGCT 58.634 50.000 0.00 0.00 0.00 4.75
3556 3852 1.004044 AGATGGTTCAGGTCTTGGCTG 59.996 52.381 0.00 0.00 0.00 4.85
3557 3853 1.003580 GATGGTTCAGGTCTTGGCTGA 59.996 52.381 0.00 0.00 0.00 4.26
3558 3854 0.843309 TGGTTCAGGTCTTGGCTGAA 59.157 50.000 0.00 0.00 35.11 3.02
3559 3855 1.425066 TGGTTCAGGTCTTGGCTGAAT 59.575 47.619 0.00 0.00 38.99 2.57
3560 3856 2.158475 TGGTTCAGGTCTTGGCTGAATT 60.158 45.455 0.00 0.00 38.99 2.17
3561 3857 2.489722 GGTTCAGGTCTTGGCTGAATTC 59.510 50.000 0.00 0.00 38.99 2.17
3562 3858 3.416156 GTTCAGGTCTTGGCTGAATTCT 58.584 45.455 7.05 0.00 38.99 2.40
3563 3859 3.340814 TCAGGTCTTGGCTGAATTCTC 57.659 47.619 7.05 0.00 0.00 2.87
3564 3860 2.639347 TCAGGTCTTGGCTGAATTCTCA 59.361 45.455 7.05 0.10 0.00 3.27
3565 3861 3.072915 TCAGGTCTTGGCTGAATTCTCAA 59.927 43.478 7.05 7.89 0.00 3.02
3566 3862 3.439476 CAGGTCTTGGCTGAATTCTCAAG 59.561 47.826 20.46 20.46 38.26 3.02
3567 3863 3.328931 AGGTCTTGGCTGAATTCTCAAGA 59.671 43.478 22.92 22.92 41.96 3.02
3568 3864 3.688673 GGTCTTGGCTGAATTCTCAAGAG 59.311 47.826 25.20 10.88 43.92 2.85
3569 3865 4.322567 GTCTTGGCTGAATTCTCAAGAGT 58.677 43.478 25.20 0.00 43.92 3.24
3570 3866 4.759183 GTCTTGGCTGAATTCTCAAGAGTT 59.241 41.667 25.20 0.00 43.92 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.030638 AACACATGGACGCTTTGTGC 59.969 50.000 0.00 0.00 43.51 4.57
57 58 1.134670 AGACGGCAGGCTATCAACTTC 60.135 52.381 0.00 0.00 30.69 3.01
95 99 1.635487 AGATTAGGGAAAGGCAGTGCA 59.365 47.619 18.61 0.00 0.00 4.57
96 100 2.019984 CAGATTAGGGAAAGGCAGTGC 58.980 52.381 6.55 6.55 0.00 4.40
98 102 2.239907 GACCAGATTAGGGAAAGGCAGT 59.760 50.000 0.00 0.00 0.00 4.40
100 104 1.564348 GGACCAGATTAGGGAAAGGCA 59.436 52.381 0.00 0.00 0.00 4.75
101 105 1.475213 CGGACCAGATTAGGGAAAGGC 60.475 57.143 0.00 0.00 0.00 4.35
104 108 1.479323 CGACGGACCAGATTAGGGAAA 59.521 52.381 0.00 0.00 0.00 3.13
106 110 0.754217 CCGACGGACCAGATTAGGGA 60.754 60.000 8.64 0.00 0.00 4.20
107 111 0.754217 TCCGACGGACCAGATTAGGG 60.754 60.000 13.88 0.00 0.00 3.53
108 112 1.000163 CATCCGACGGACCAGATTAGG 60.000 57.143 21.02 0.00 32.98 2.69
109 113 1.603172 GCATCCGACGGACCAGATTAG 60.603 57.143 21.02 3.15 32.98 1.73
242 259 4.476410 CAGTGCGCTGCTGCCATG 62.476 66.667 15.44 8.21 35.77 3.66
347 392 0.649475 GCGTGACAGCAGCTGAATAG 59.351 55.000 29.70 16.94 35.18 1.73
348 393 0.740868 GGCGTGACAGCAGCTGAATA 60.741 55.000 29.70 11.33 39.27 1.75
349 394 2.037136 GGCGTGACAGCAGCTGAAT 61.037 57.895 29.70 7.41 39.27 2.57
350 395 2.666190 GGCGTGACAGCAGCTGAA 60.666 61.111 29.70 13.65 39.27 3.02
464 543 2.669391 CGCTTCCATTTTCACCTTCTGC 60.669 50.000 0.00 0.00 0.00 4.26
514 593 1.605753 CTGCAGGTATGAGCATGCAT 58.394 50.000 21.98 8.19 46.67 3.96
515 594 1.099295 GCTGCAGGTATGAGCATGCA 61.099 55.000 21.98 0.00 45.82 3.96
516 595 0.818445 AGCTGCAGGTATGAGCATGC 60.818 55.000 18.63 10.51 40.42 4.06
518 597 0.545171 ACAGCTGCAGGTATGAGCAT 59.455 50.000 19.71 0.00 40.42 3.79
519 598 1.134699 GTACAGCTGCAGGTATGAGCA 60.135 52.381 19.71 0.00 39.25 4.26
520 599 1.576356 GTACAGCTGCAGGTATGAGC 58.424 55.000 19.71 0.00 32.82 4.26
521 600 1.536922 CGGTACAGCTGCAGGTATGAG 60.537 57.143 19.71 8.83 0.00 2.90
522 601 0.459899 CGGTACAGCTGCAGGTATGA 59.540 55.000 19.71 3.66 0.00 2.15
523 602 2.977700 CGGTACAGCTGCAGGTATG 58.022 57.895 19.71 10.01 0.00 2.39
637 716 3.728279 GATGGACCCGGGCACGTAC 62.728 68.421 24.08 1.01 38.78 3.67
638 717 3.463585 GATGGACCCGGGCACGTA 61.464 66.667 24.08 8.31 38.78 3.57
641 720 3.774599 GATGGATGGACCCGGGCAC 62.775 68.421 24.08 15.03 38.00 5.01
642 721 3.488569 GATGGATGGACCCGGGCA 61.489 66.667 24.08 12.67 38.00 5.36
643 722 4.626081 CGATGGATGGACCCGGGC 62.626 72.222 24.08 13.95 38.00 6.13
644 723 4.626081 GCGATGGATGGACCCGGG 62.626 72.222 22.25 22.25 38.00 5.73
743 822 0.251742 AGCCCCAATTAAGTGCAGCA 60.252 50.000 14.93 0.00 0.00 4.41
750 829 7.201635 GCACATTCAAAAATAGCCCCAATTAAG 60.202 37.037 0.00 0.00 0.00 1.85
756 835 2.094286 CGCACATTCAAAAATAGCCCCA 60.094 45.455 0.00 0.00 0.00 4.96
781 860 3.044059 GCGCGGCAAGCTGAAATCT 62.044 57.895 8.83 0.00 45.59 2.40
809 888 2.556287 CGGCCGAACAAAGAGCAC 59.444 61.111 24.07 0.00 0.00 4.40
810 889 2.463589 ATCCGGCCGAACAAAGAGCA 62.464 55.000 30.73 0.00 0.00 4.26
812 891 2.240493 ATATCCGGCCGAACAAAGAG 57.760 50.000 30.73 7.15 0.00 2.85
813 892 2.224113 GGTATATCCGGCCGAACAAAGA 60.224 50.000 30.73 15.08 0.00 2.52
814 893 2.140717 GGTATATCCGGCCGAACAAAG 58.859 52.381 30.73 8.93 0.00 2.77
815 894 1.202675 GGGTATATCCGGCCGAACAAA 60.203 52.381 30.73 7.47 37.00 2.83
816 895 0.393820 GGGTATATCCGGCCGAACAA 59.606 55.000 30.73 9.54 37.00 2.83
818 897 0.037605 CAGGGTATATCCGGCCGAAC 60.038 60.000 30.73 15.70 37.00 3.95
819 898 1.823169 GCAGGGTATATCCGGCCGAA 61.823 60.000 30.73 6.63 41.18 4.30
820 899 2.280552 GCAGGGTATATCCGGCCGA 61.281 63.158 30.73 13.82 41.18 5.54
821 900 2.227089 GAGCAGGGTATATCCGGCCG 62.227 65.000 21.84 21.04 46.77 6.13
823 902 0.905337 AGGAGCAGGGTATATCCGGC 60.905 60.000 18.47 18.47 46.10 6.13
824 903 2.291670 ACTAGGAGCAGGGTATATCCGG 60.292 54.545 0.00 0.00 36.91 5.14
832 918 1.689892 GGCTAGAACTAGGAGCAGGGT 60.690 57.143 10.30 0.00 37.98 4.34
834 920 0.671251 CGGCTAGAACTAGGAGCAGG 59.329 60.000 10.30 0.00 37.98 4.85
838 924 0.955905 GAGGCGGCTAGAACTAGGAG 59.044 60.000 13.24 0.00 33.87 3.69
843 929 2.973983 TATAGGAGGCGGCTAGAACT 57.026 50.000 13.24 10.72 0.00 3.01
846 932 4.579340 CGATATTTATAGGAGGCGGCTAGA 59.421 45.833 13.24 0.00 0.00 2.43
852 938 2.798499 CGCCCGATATTTATAGGAGGCG 60.798 54.545 5.65 5.65 34.79 5.52
972 1058 2.824936 TCAGTTCGTTACCCCGATTACA 59.175 45.455 0.00 0.00 36.62 2.41
975 1061 1.403249 CGTCAGTTCGTTACCCCGATT 60.403 52.381 0.00 0.00 36.62 3.34
978 1064 0.171903 ATCGTCAGTTCGTTACCCCG 59.828 55.000 0.00 0.00 0.00 5.73
984 1070 1.909376 CCATCGATCGTCAGTTCGTT 58.091 50.000 15.94 0.00 39.73 3.85
992 1078 0.249155 TAAACGGGCCATCGATCGTC 60.249 55.000 15.94 0.00 34.60 4.20
1047 1133 4.388499 GGCGCCGTTTCCTCCAGA 62.388 66.667 12.58 0.00 0.00 3.86
1065 1151 4.792804 GGAGGCAGAGGCAGTGGC 62.793 72.222 9.02 9.02 43.71 5.01
1066 1152 4.463879 CGGAGGCAGAGGCAGTGG 62.464 72.222 0.00 0.00 43.71 4.00
1284 1379 1.355916 GGACGAGCTGCTACTACCG 59.644 63.158 0.15 3.90 0.00 4.02
1316 1411 0.041982 GTCCTTCCTCTCCTCCCTGT 59.958 60.000 0.00 0.00 0.00 4.00
1516 1611 4.001618 TCACAAGTTCCGATCAACATCA 57.998 40.909 0.00 0.00 0.00 3.07
1517 1612 5.122239 TCATTCACAAGTTCCGATCAACATC 59.878 40.000 0.00 0.00 0.00 3.06
1518 1613 5.003160 TCATTCACAAGTTCCGATCAACAT 58.997 37.500 0.00 0.00 0.00 2.71
1519 1614 4.384940 TCATTCACAAGTTCCGATCAACA 58.615 39.130 0.00 0.00 0.00 3.33
1520 1615 5.551760 ATCATTCACAAGTTCCGATCAAC 57.448 39.130 0.00 0.00 0.00 3.18
1521 1616 4.329801 CGATCATTCACAAGTTCCGATCAA 59.670 41.667 0.00 0.00 0.00 2.57
1531 1626 4.715896 CAAGTCCAACGATCATTCACAAG 58.284 43.478 0.00 0.00 0.00 3.16
1556 1653 1.035385 TCTTCCTGCCTGCATGCATG 61.035 55.000 22.97 22.70 41.16 4.06
1568 1665 0.250513 CCTCCTCCGGTTTCTTCCTG 59.749 60.000 0.00 0.00 0.00 3.86
1577 1674 1.381872 CATCACCTCCTCCTCCGGT 60.382 63.158 0.00 0.00 0.00 5.28
1592 1689 1.106285 GGCCAAGGTTCATGGACATC 58.894 55.000 6.44 0.00 45.90 3.06
1598 1695 2.353610 GCCCAGGCCAAGGTTCATG 61.354 63.158 5.01 0.00 34.56 3.07
1682 1779 3.071206 ACGAGCGCCTCCATCTGT 61.071 61.111 2.29 0.00 0.00 3.41
1793 1890 0.391263 GGTCCTTGATCACGGTGGAC 60.391 60.000 17.16 18.72 44.51 4.02
1898 1995 3.470709 CATCTTGTTATGGTCCATCGCT 58.529 45.455 7.92 0.00 0.00 4.93
1931 2028 3.753434 CGGCTCAGCTCGACCTGT 61.753 66.667 7.59 0.00 34.47 4.00
1935 2032 3.260483 CATGCGGCTCAGCTCGAC 61.260 66.667 11.22 4.02 38.13 4.20
2007 2104 2.022779 CGATCGTACTACGTGCGTTAC 58.977 52.381 7.03 0.00 43.14 2.50
2008 2105 1.923864 TCGATCGTACTACGTGCGTTA 59.076 47.619 15.94 5.20 43.14 3.18
2009 2106 0.721154 TCGATCGTACTACGTGCGTT 59.279 50.000 15.94 3.74 43.14 4.84
2010 2107 0.299895 CTCGATCGTACTACGTGCGT 59.700 55.000 15.94 2.05 43.14 5.24
2011 2108 0.299895 ACTCGATCGTACTACGTGCG 59.700 55.000 15.94 12.35 43.14 5.34
2012 2109 1.061711 ACACTCGATCGTACTACGTGC 59.938 52.381 15.94 1.79 43.14 5.34
2013 2110 3.302092 GGTACACTCGATCGTACTACGTG 60.302 52.174 15.94 14.63 43.14 4.49
2014 2111 2.860735 GGTACACTCGATCGTACTACGT 59.139 50.000 15.94 7.65 43.14 3.57
2015 2112 3.119291 AGGTACACTCGATCGTACTACG 58.881 50.000 15.94 1.93 44.19 3.51
2016 2113 4.707210 GAGGTACACTCGATCGTACTAC 57.293 50.000 15.94 10.05 38.42 2.73
2088 2210 2.390599 ATCATCAGCAAACGCGCGT 61.391 52.632 32.73 32.73 36.85 6.01
2180 2303 2.098680 CAGCTCCTCGACGTCGTC 59.901 66.667 34.40 15.51 40.80 4.20
2286 2427 1.088340 TCGTCGTCGTCCTCATCCTC 61.088 60.000 1.33 0.00 38.33 3.71
2287 2428 1.078637 TCGTCGTCGTCCTCATCCT 60.079 57.895 1.33 0.00 38.33 3.24
2288 2429 1.062206 GTCGTCGTCGTCCTCATCC 59.938 63.158 1.33 0.00 38.33 3.51
2289 2430 1.296722 CGTCGTCGTCGTCCTCATC 60.297 63.158 3.67 0.00 38.33 2.92
2290 2431 2.747822 CCGTCGTCGTCGTCCTCAT 61.748 63.158 10.76 0.00 38.33 2.90
2291 2432 3.417224 CCGTCGTCGTCGTCCTCA 61.417 66.667 10.76 0.00 38.33 3.86
2559 2700 1.999051 CGTGTGCTTATCGGACTGC 59.001 57.895 0.00 0.00 34.66 4.40
2626 2774 2.094649 CCCGCCATTACTAGCTACTAGC 60.095 54.545 0.00 0.00 42.84 3.42
2627 2775 3.155501 ACCCGCCATTACTAGCTACTAG 58.844 50.000 0.08 0.08 39.72 2.57
2628 2776 3.152341 GACCCGCCATTACTAGCTACTA 58.848 50.000 0.00 0.00 0.00 1.82
2629 2777 1.962100 GACCCGCCATTACTAGCTACT 59.038 52.381 0.00 0.00 0.00 2.57
2630 2778 1.684983 TGACCCGCCATTACTAGCTAC 59.315 52.381 0.00 0.00 0.00 3.58
2668 2816 3.137687 CCACAAACCCCAACTGCC 58.862 61.111 0.00 0.00 0.00 4.85
2675 2823 3.920093 CTCTCCCGCCACAAACCCC 62.920 68.421 0.00 0.00 0.00 4.95
2686 2834 2.756283 AAGACCTCGCCTCTCCCG 60.756 66.667 0.00 0.00 0.00 5.14
2695 2844 1.519455 GCGTGATCCCAAGACCTCG 60.519 63.158 0.00 0.00 0.00 4.63
2721 2873 2.943033 GCTGTTATTAACACCGCCTCAT 59.057 45.455 5.14 0.00 36.25 2.90
2781 2944 1.074167 ATCCCTTCCCGCCATCTCT 60.074 57.895 0.00 0.00 0.00 3.10
2795 2958 2.206182 AAACACGCCCCCTACATCCC 62.206 60.000 0.00 0.00 0.00 3.85
2798 2962 0.610785 CCAAAACACGCCCCCTACAT 60.611 55.000 0.00 0.00 0.00 2.29
2799 2963 1.228306 CCAAAACACGCCCCCTACA 60.228 57.895 0.00 0.00 0.00 2.74
2800 2964 2.632544 GCCAAAACACGCCCCCTAC 61.633 63.158 0.00 0.00 0.00 3.18
2801 2965 2.282603 GCCAAAACACGCCCCCTA 60.283 61.111 0.00 0.00 0.00 3.53
2809 2973 1.300620 GCCTTTCCCGCCAAAACAC 60.301 57.895 0.00 0.00 0.00 3.32
2810 2974 2.851071 CGCCTTTCCCGCCAAAACA 61.851 57.895 0.00 0.00 0.00 2.83
2817 2981 4.025401 CACACACGCCTTTCCCGC 62.025 66.667 0.00 0.00 0.00 6.13
2818 2982 3.353836 CCACACACGCCTTTCCCG 61.354 66.667 0.00 0.00 0.00 5.14
2819 2983 2.203294 ACCACACACGCCTTTCCC 60.203 61.111 0.00 0.00 0.00 3.97
2822 2986 2.186826 GCAGACCACACACGCCTTT 61.187 57.895 0.00 0.00 0.00 3.11
2823 2987 2.591715 GCAGACCACACACGCCTT 60.592 61.111 0.00 0.00 0.00 4.35
2824 2988 3.860605 TGCAGACCACACACGCCT 61.861 61.111 0.00 0.00 0.00 5.52
2841 3010 9.301153 CAGCTGAAACAAAACTTTTATTACAGT 57.699 29.630 8.42 0.00 0.00 3.55
2877 3062 4.984161 AGAACAAAACAAGCAATCAATCGG 59.016 37.500 0.00 0.00 0.00 4.18
2907 3169 4.398319 TCTTTCCCTCGCAGAATTTTTCT 58.602 39.130 0.00 0.00 41.70 2.52
2908 3170 4.455877 TCTCTTTCCCTCGCAGAATTTTTC 59.544 41.667 0.00 0.00 34.09 2.29
2909 3171 4.398319 TCTCTTTCCCTCGCAGAATTTTT 58.602 39.130 0.00 0.00 34.09 1.94
2910 3172 4.021102 TCTCTTTCCCTCGCAGAATTTT 57.979 40.909 0.00 0.00 34.09 1.82
2930 3192 0.826256 AGAAACTTGGCCCCGGTTTC 60.826 55.000 24.95 24.95 45.04 2.78
2943 3205 3.007398 AGCTCAGACCGAATTCAGAAACT 59.993 43.478 6.22 0.00 0.00 2.66
2949 3211 1.404717 GCAGAGCTCAGACCGAATTCA 60.405 52.381 17.77 0.00 0.00 2.57
2963 3232 4.715527 ATTTGGAAAATCAGAGCAGAGC 57.284 40.909 0.00 0.00 0.00 4.09
2969 3238 5.300969 TCGCAGAATTTGGAAAATCAGAG 57.699 39.130 0.00 0.00 0.00 3.35
2977 3246 2.577606 TTCCCTCGCAGAATTTGGAA 57.422 45.000 0.00 0.00 34.09 3.53
2978 3247 2.577606 TTTCCCTCGCAGAATTTGGA 57.422 45.000 0.00 0.00 34.09 3.53
3043 3312 3.311871 CCTCGCAGAATTTGGAATCAGAG 59.688 47.826 0.00 0.00 34.09 3.35
3072 3341 2.408565 TCTGAAACCAGGTCCAGTTCT 58.591 47.619 17.13 0.00 32.62 3.01
3073 3342 2.930826 TCTGAAACCAGGTCCAGTTC 57.069 50.000 17.13 7.97 32.62 3.01
3077 3346 2.552155 CCGAATTCTGAAACCAGGTCCA 60.552 50.000 3.52 0.00 32.62 4.02
3090 3359 4.282195 AGTTCAGACTTCAGACCGAATTCT 59.718 41.667 3.52 0.00 42.63 2.40
3105 3374 6.634805 TGGAATATCAGAACAGAGTTCAGAC 58.365 40.000 11.92 0.00 0.00 3.51
3110 3379 8.954350 CAGATTTTGGAATATCAGAACAGAGTT 58.046 33.333 0.00 0.00 0.00 3.01
3111 3380 8.503458 CAGATTTTGGAATATCAGAACAGAGT 57.497 34.615 0.00 0.00 0.00 3.24
3132 3401 1.224003 ACCCATTTGCCCTCCCAGAT 61.224 55.000 0.00 0.00 0.00 2.90
3143 3412 0.999712 ACCTGGTCCCTACCCATTTG 59.000 55.000 0.00 0.00 46.16 2.32
3194 3468 5.050490 AGTAAATTCCATCAGAATCGGACG 58.950 41.667 0.00 0.00 44.75 4.79
3206 3480 1.689258 GCAGCCCCCAGTAAATTCCAT 60.689 52.381 0.00 0.00 0.00 3.41
3275 3561 3.135994 TGTCAGTTTTTCTAACGCCCTC 58.864 45.455 0.00 0.00 0.00 4.30
3276 3562 3.139077 CTGTCAGTTTTTCTAACGCCCT 58.861 45.455 0.00 0.00 0.00 5.19
3298 3585 0.677288 TACCACTGTTACTGCTGCGT 59.323 50.000 0.00 0.00 0.00 5.24
3299 3586 1.726791 CTTACCACTGTTACTGCTGCG 59.273 52.381 0.00 0.00 0.00 5.18
3302 3589 7.241042 TCTATTTCTTACCACTGTTACTGCT 57.759 36.000 0.00 0.00 0.00 4.24
3325 3617 1.194218 AGAGCAGCTTCTCCTCCTTC 58.806 55.000 9.94 0.00 33.66 3.46
3326 3618 1.655372 AAGAGCAGCTTCTCCTCCTT 58.345 50.000 9.94 0.00 33.66 3.36
3358 3654 5.072329 CAGTATGAACTATGATGAAGGGGGT 59.928 44.000 0.00 0.00 39.69 4.95
3359 3655 5.307976 TCAGTATGAACTATGATGAAGGGGG 59.692 44.000 0.00 0.00 45.97 5.40
3360 3656 6.425210 TCAGTATGAACTATGATGAAGGGG 57.575 41.667 0.00 0.00 45.97 4.79
3394 3690 6.987403 TCATTGCTAGGGGTTAAACTTTTT 57.013 33.333 0.00 0.00 0.00 1.94
3395 3691 6.987403 TTCATTGCTAGGGGTTAAACTTTT 57.013 33.333 0.00 0.00 0.00 2.27
3396 3692 6.987403 TTTCATTGCTAGGGGTTAAACTTT 57.013 33.333 0.00 0.00 0.00 2.66
3397 3693 6.987403 TTTTCATTGCTAGGGGTTAAACTT 57.013 33.333 0.00 0.00 0.00 2.66
3398 3694 6.325286 TGTTTTTCATTGCTAGGGGTTAAACT 59.675 34.615 0.00 0.00 0.00 2.66
3399 3695 6.517605 TGTTTTTCATTGCTAGGGGTTAAAC 58.482 36.000 0.00 0.00 0.00 2.01
3400 3696 6.732896 TGTTTTTCATTGCTAGGGGTTAAA 57.267 33.333 0.00 0.00 0.00 1.52
3401 3697 5.279256 GCTGTTTTTCATTGCTAGGGGTTAA 60.279 40.000 0.00 0.00 0.00 2.01
3402 3698 4.219725 GCTGTTTTTCATTGCTAGGGGTTA 59.780 41.667 0.00 0.00 0.00 2.85
3403 3699 3.006859 GCTGTTTTTCATTGCTAGGGGTT 59.993 43.478 0.00 0.00 0.00 4.11
3404 3700 2.562738 GCTGTTTTTCATTGCTAGGGGT 59.437 45.455 0.00 0.00 0.00 4.95
3405 3701 2.827921 AGCTGTTTTTCATTGCTAGGGG 59.172 45.455 0.00 0.00 31.71 4.79
3406 3702 3.367703 CCAGCTGTTTTTCATTGCTAGGG 60.368 47.826 13.81 0.00 32.29 3.53
3407 3703 3.367703 CCCAGCTGTTTTTCATTGCTAGG 60.368 47.826 13.81 0.00 32.29 3.02
3408 3704 3.507233 TCCCAGCTGTTTTTCATTGCTAG 59.493 43.478 13.81 0.00 32.29 3.42
3409 3705 3.255642 GTCCCAGCTGTTTTTCATTGCTA 59.744 43.478 13.81 0.00 32.29 3.49
3410 3706 2.036346 GTCCCAGCTGTTTTTCATTGCT 59.964 45.455 13.81 0.00 0.00 3.91
3411 3707 2.407090 GTCCCAGCTGTTTTTCATTGC 58.593 47.619 13.81 0.00 0.00 3.56
3412 3708 2.293122 TCGTCCCAGCTGTTTTTCATTG 59.707 45.455 13.81 0.00 0.00 2.82
3413 3709 2.554032 CTCGTCCCAGCTGTTTTTCATT 59.446 45.455 13.81 0.00 0.00 2.57
3414 3710 2.154462 CTCGTCCCAGCTGTTTTTCAT 58.846 47.619 13.81 0.00 0.00 2.57
3415 3711 1.593196 CTCGTCCCAGCTGTTTTTCA 58.407 50.000 13.81 0.00 0.00 2.69
3416 3712 0.238553 GCTCGTCCCAGCTGTTTTTC 59.761 55.000 13.81 0.00 36.38 2.29
3417 3713 1.507141 CGCTCGTCCCAGCTGTTTTT 61.507 55.000 13.81 0.00 37.25 1.94
3418 3714 1.961277 CGCTCGTCCCAGCTGTTTT 60.961 57.895 13.81 0.00 37.25 2.43
3419 3715 2.357517 CGCTCGTCCCAGCTGTTT 60.358 61.111 13.81 0.00 37.25 2.83
3420 3716 4.379243 CCGCTCGTCCCAGCTGTT 62.379 66.667 13.81 0.00 37.25 3.16
3425 3721 3.708220 GAGAAGCCGCTCGTCCCAG 62.708 68.421 0.00 0.00 0.00 4.45
3426 3722 3.760035 GAGAAGCCGCTCGTCCCA 61.760 66.667 0.00 0.00 0.00 4.37
3427 3723 3.007973 AAGAGAAGCCGCTCGTCCC 62.008 63.158 0.00 0.00 39.87 4.46
3428 3724 1.807573 CAAGAGAAGCCGCTCGTCC 60.808 63.158 0.00 0.00 39.87 4.79
3429 3725 0.179124 ATCAAGAGAAGCCGCTCGTC 60.179 55.000 0.00 0.00 39.87 4.20
3430 3726 0.179124 GATCAAGAGAAGCCGCTCGT 60.179 55.000 0.00 0.00 39.87 4.18
3431 3727 1.205485 CGATCAAGAGAAGCCGCTCG 61.205 60.000 0.00 0.00 39.87 5.03
3432 3728 1.486644 GCGATCAAGAGAAGCCGCTC 61.487 60.000 0.00 0.00 37.80 5.03
3433 3729 1.520342 GCGATCAAGAGAAGCCGCT 60.520 57.895 0.00 0.00 37.80 5.52
3434 3730 0.249073 TAGCGATCAAGAGAAGCCGC 60.249 55.000 0.00 0.00 39.63 6.53
3435 3731 2.209838 TTAGCGATCAAGAGAAGCCG 57.790 50.000 0.00 0.00 33.63 5.52
3436 3732 3.988819 AGATTAGCGATCAAGAGAAGCC 58.011 45.455 6.01 0.00 37.22 4.35
3437 3733 5.062058 GCATAGATTAGCGATCAAGAGAAGC 59.938 44.000 6.01 0.00 37.22 3.86
3438 3734 5.576384 GGCATAGATTAGCGATCAAGAGAAG 59.424 44.000 6.01 0.00 37.22 2.85
3439 3735 5.473931 GGCATAGATTAGCGATCAAGAGAA 58.526 41.667 6.01 0.00 37.22 2.87
3440 3736 4.081972 GGGCATAGATTAGCGATCAAGAGA 60.082 45.833 6.01 0.00 37.22 3.10
3441 3737 4.081752 AGGGCATAGATTAGCGATCAAGAG 60.082 45.833 6.01 0.00 37.22 2.85
3442 3738 3.834813 AGGGCATAGATTAGCGATCAAGA 59.165 43.478 6.01 0.00 37.22 3.02
3443 3739 3.931468 CAGGGCATAGATTAGCGATCAAG 59.069 47.826 6.01 0.00 37.22 3.02
3444 3740 3.324846 ACAGGGCATAGATTAGCGATCAA 59.675 43.478 6.01 0.00 37.22 2.57
3445 3741 2.899900 ACAGGGCATAGATTAGCGATCA 59.100 45.455 6.01 0.00 37.22 2.92
3446 3742 3.601443 ACAGGGCATAGATTAGCGATC 57.399 47.619 0.00 0.00 34.83 3.69
3447 3743 3.071602 ACAACAGGGCATAGATTAGCGAT 59.928 43.478 0.00 0.00 0.00 4.58
3448 3744 2.434336 ACAACAGGGCATAGATTAGCGA 59.566 45.455 0.00 0.00 0.00 4.93
3449 3745 2.545526 CACAACAGGGCATAGATTAGCG 59.454 50.000 0.00 0.00 0.00 4.26
3450 3746 3.808728 TCACAACAGGGCATAGATTAGC 58.191 45.455 0.00 0.00 0.00 3.09
3451 3747 6.319658 ACAAATCACAACAGGGCATAGATTAG 59.680 38.462 0.00 0.00 0.00 1.73
3452 3748 6.095300 CACAAATCACAACAGGGCATAGATTA 59.905 38.462 0.00 0.00 0.00 1.75
3453 3749 5.018809 ACAAATCACAACAGGGCATAGATT 58.981 37.500 0.00 0.00 0.00 2.40
3454 3750 4.400251 CACAAATCACAACAGGGCATAGAT 59.600 41.667 0.00 0.00 0.00 1.98
3455 3751 3.758023 CACAAATCACAACAGGGCATAGA 59.242 43.478 0.00 0.00 0.00 1.98
3456 3752 3.507233 ACACAAATCACAACAGGGCATAG 59.493 43.478 0.00 0.00 0.00 2.23
3457 3753 3.495331 ACACAAATCACAACAGGGCATA 58.505 40.909 0.00 0.00 0.00 3.14
3458 3754 2.318908 ACACAAATCACAACAGGGCAT 58.681 42.857 0.00 0.00 0.00 4.40
3459 3755 1.774110 ACACAAATCACAACAGGGCA 58.226 45.000 0.00 0.00 0.00 5.36
3460 3756 2.472816 CAACACAAATCACAACAGGGC 58.527 47.619 0.00 0.00 0.00 5.19
3461 3757 2.430332 ACCAACACAAATCACAACAGGG 59.570 45.455 0.00 0.00 0.00 4.45
3462 3758 3.119173 ACACCAACACAAATCACAACAGG 60.119 43.478 0.00 0.00 0.00 4.00
3463 3759 4.108699 ACACCAACACAAATCACAACAG 57.891 40.909 0.00 0.00 0.00 3.16
3464 3760 4.021981 TGAACACCAACACAAATCACAACA 60.022 37.500 0.00 0.00 0.00 3.33
3465 3761 4.326009 GTGAACACCAACACAAATCACAAC 59.674 41.667 0.00 0.00 36.58 3.32
3466 3762 4.489810 GTGAACACCAACACAAATCACAA 58.510 39.130 0.00 0.00 36.58 3.33
3467 3763 4.103365 GTGAACACCAACACAAATCACA 57.897 40.909 0.00 0.00 36.58 3.58
3493 3789 2.711311 CAACATCGATGGCCAGCG 59.289 61.111 36.52 36.52 42.20 5.18
3494 3790 1.660560 AAGCAACATCGATGGCCAGC 61.661 55.000 28.09 23.03 0.00 4.85
3495 3791 1.331756 GTAAGCAACATCGATGGCCAG 59.668 52.381 28.09 15.46 0.00 4.85
3496 3792 1.378531 GTAAGCAACATCGATGGCCA 58.621 50.000 28.09 8.56 0.00 5.36
3497 3793 0.663153 GGTAAGCAACATCGATGGCC 59.337 55.000 28.09 15.59 0.00 5.36
3498 3794 1.378531 TGGTAAGCAACATCGATGGC 58.621 50.000 28.09 21.77 0.00 4.40
3499 3795 3.680642 CTTGGTAAGCAACATCGATGG 57.319 47.619 28.09 13.25 0.00 3.51
3511 3807 2.028930 ACTCTGAACCTCGCTTGGTAAG 60.029 50.000 0.00 0.90 39.83 2.34
3512 3808 1.968493 ACTCTGAACCTCGCTTGGTAA 59.032 47.619 0.00 0.00 39.83 2.85
3513 3809 1.629043 ACTCTGAACCTCGCTTGGTA 58.371 50.000 0.00 0.00 39.83 3.25
3514 3810 0.759346 AACTCTGAACCTCGCTTGGT 59.241 50.000 0.00 0.00 43.11 3.67
3515 3811 2.743636 TAACTCTGAACCTCGCTTGG 57.256 50.000 0.00 0.00 0.00 3.61
3516 3812 5.250235 TCTATAACTCTGAACCTCGCTTG 57.750 43.478 0.00 0.00 0.00 4.01
3517 3813 5.221342 CCATCTATAACTCTGAACCTCGCTT 60.221 44.000 0.00 0.00 0.00 4.68
3518 3814 4.279671 CCATCTATAACTCTGAACCTCGCT 59.720 45.833 0.00 0.00 0.00 4.93
3519 3815 4.038162 ACCATCTATAACTCTGAACCTCGC 59.962 45.833 0.00 0.00 0.00 5.03
3520 3816 5.776173 ACCATCTATAACTCTGAACCTCG 57.224 43.478 0.00 0.00 0.00 4.63
3521 3817 7.113658 TGAACCATCTATAACTCTGAACCTC 57.886 40.000 0.00 0.00 0.00 3.85
3522 3818 6.098982 CCTGAACCATCTATAACTCTGAACCT 59.901 42.308 0.00 0.00 0.00 3.50
3523 3819 6.127026 ACCTGAACCATCTATAACTCTGAACC 60.127 42.308 0.00 0.00 0.00 3.62
3524 3820 6.879400 ACCTGAACCATCTATAACTCTGAAC 58.121 40.000 0.00 0.00 0.00 3.18
3525 3821 6.897966 AGACCTGAACCATCTATAACTCTGAA 59.102 38.462 0.00 0.00 0.00 3.02
3526 3822 6.436027 AGACCTGAACCATCTATAACTCTGA 58.564 40.000 0.00 0.00 0.00 3.27
3527 3823 6.723298 AGACCTGAACCATCTATAACTCTG 57.277 41.667 0.00 0.00 0.00 3.35
3528 3824 6.098982 CCAAGACCTGAACCATCTATAACTCT 59.901 42.308 0.00 0.00 0.00 3.24
3529 3825 6.284459 CCAAGACCTGAACCATCTATAACTC 58.716 44.000 0.00 0.00 0.00 3.01
3530 3826 5.396884 GCCAAGACCTGAACCATCTATAACT 60.397 44.000 0.00 0.00 0.00 2.24
3531 3827 4.816925 GCCAAGACCTGAACCATCTATAAC 59.183 45.833 0.00 0.00 0.00 1.89
3532 3828 4.721776 AGCCAAGACCTGAACCATCTATAA 59.278 41.667 0.00 0.00 0.00 0.98
3533 3829 4.101585 CAGCCAAGACCTGAACCATCTATA 59.898 45.833 0.00 0.00 32.03 1.31
3534 3830 3.118112 CAGCCAAGACCTGAACCATCTAT 60.118 47.826 0.00 0.00 32.03 1.98
3535 3831 2.237143 CAGCCAAGACCTGAACCATCTA 59.763 50.000 0.00 0.00 32.03 1.98
3536 3832 1.004044 CAGCCAAGACCTGAACCATCT 59.996 52.381 0.00 0.00 32.03 2.90
3537 3833 1.003580 TCAGCCAAGACCTGAACCATC 59.996 52.381 0.00 0.00 36.46 3.51
3538 3834 1.067295 TCAGCCAAGACCTGAACCAT 58.933 50.000 0.00 0.00 36.46 3.55
3539 3835 0.843309 TTCAGCCAAGACCTGAACCA 59.157 50.000 0.09 0.00 42.58 3.67
3540 3836 3.725754 TTCAGCCAAGACCTGAACC 57.274 52.632 0.09 0.00 42.58 3.62
3543 3839 2.639347 TGAGAATTCAGCCAAGACCTGA 59.361 45.455 8.44 0.00 37.54 3.86
3544 3840 3.063510 TGAGAATTCAGCCAAGACCTG 57.936 47.619 8.44 0.00 0.00 4.00
3545 3841 3.328931 TCTTGAGAATTCAGCCAAGACCT 59.671 43.478 22.71 0.00 39.76 3.85
3546 3842 3.679389 TCTTGAGAATTCAGCCAAGACC 58.321 45.455 22.71 0.53 39.76 3.85
3547 3843 4.322567 ACTCTTGAGAATTCAGCCAAGAC 58.677 43.478 22.71 3.08 39.76 3.01
3548 3844 4.630644 ACTCTTGAGAATTCAGCCAAGA 57.369 40.909 23.90 23.90 41.62 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.