Multiple sequence alignment - TraesCS7A01G146400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G146400 chr7A 100.000 6867 0 0 1 6867 98097219 98104085 0.000000e+00 12682.0
1 TraesCS7A01G146400 chr7A 90.850 1235 53 24 1455 2654 98545926 98547135 0.000000e+00 1600.0
2 TraesCS7A01G146400 chr7A 87.959 1171 89 22 4877 6026 98548228 98549367 0.000000e+00 1334.0
3 TraesCS7A01G146400 chr7A 83.144 1584 141 50 925 2415 98736160 98734610 0.000000e+00 1330.0
4 TraesCS7A01G146400 chr7A 90.360 778 36 16 4122 4872 98547419 98548184 0.000000e+00 985.0
5 TraesCS7A01G146400 chr7A 96.711 456 15 0 2700 3155 716736478 716736933 0.000000e+00 760.0
6 TraesCS7A01G146400 chr7A 84.948 578 45 22 251 819 98544528 98545072 1.300000e-151 547.0
7 TraesCS7A01G146400 chr7A 83.968 499 52 19 4388 4881 98733812 98733337 2.920000e-123 453.0
8 TraesCS7A01G146400 chr7A 79.240 737 73 47 205 878 98736995 98736276 2.270000e-119 440.0
9 TraesCS7A01G146400 chr7A 87.342 316 12 18 975 1280 98545307 98545604 3.070000e-88 337.0
10 TraesCS7A01G146400 chr7A 84.956 339 38 10 6226 6558 353249362 353249693 1.430000e-86 331.0
11 TraesCS7A01G146400 chr7A 88.339 283 5 5 3154 3435 98547157 98547412 1.440000e-81 315.0
12 TraesCS7A01G146400 chr7A 86.496 274 34 2 3777 4050 555638638 555638368 1.450000e-76 298.0
13 TraesCS7A01G146400 chr7A 84.530 181 22 6 2979 3157 546051504 546051328 2.550000e-39 174.0
14 TraesCS7A01G146400 chr7A 80.916 131 23 2 1559 1688 691468237 691468108 1.220000e-17 102.0
15 TraesCS7A01G146400 chr7A 100.000 35 0 0 2666 2700 98547123 98547157 1.600000e-06 65.8
16 TraesCS7A01G146400 chr7B 85.170 1679 139 54 925 2552 49189331 49187712 0.000000e+00 1620.0
17 TraesCS7A01G146400 chr7B 91.462 1183 62 18 4877 6026 49034098 49035274 0.000000e+00 1589.0
18 TraesCS7A01G146400 chr7B 88.174 1243 74 36 1356 2552 49026896 49028111 0.000000e+00 1413.0
19 TraesCS7A01G146400 chr7B 86.156 744 55 35 2 712 49025394 49026122 0.000000e+00 760.0
20 TraesCS7A01G146400 chr7B 88.072 503 54 2 5159 5661 49186100 49185604 5.930000e-165 592.0
21 TraesCS7A01G146400 chr7B 94.247 365 18 1 4518 4882 49033703 49034064 7.780000e-154 555.0
22 TraesCS7A01G146400 chr7B 93.586 343 16 1 3774 4116 308688136 308688472 2.210000e-139 507.0
23 TraesCS7A01G146400 chr7B 91.092 348 21 4 3433 3772 308666758 308667103 4.850000e-126 462.0
24 TraesCS7A01G146400 chr7B 84.286 490 49 20 4397 4881 49186919 49186453 2.920000e-123 453.0
25 TraesCS7A01G146400 chr7B 82.302 582 44 32 345 878 49190024 49189454 3.780000e-122 449.0
26 TraesCS7A01G146400 chr7B 86.525 282 35 1 4880 5161 49186415 49186137 2.410000e-79 307.0
27 TraesCS7A01G146400 chr7B 87.778 270 20 9 2895 3155 157766528 157766263 3.110000e-78 303.0
28 TraesCS7A01G146400 chr7B 85.502 269 27 5 3435 3696 671276561 671276824 3.160000e-68 270.0
29 TraesCS7A01G146400 chr7B 85.448 268 19 7 975 1224 49026408 49026673 1.900000e-65 261.0
30 TraesCS7A01G146400 chr7B 84.466 206 29 3 6611 6816 624467774 624467572 4.200000e-47 200.0
31 TraesCS7A01G146400 chr7B 93.333 75 4 1 2700 2774 157766765 157766692 7.280000e-20 110.0
32 TraesCS7A01G146400 chr7B 89.706 68 1 1 3344 3405 49033595 49033662 1.590000e-11 82.4
33 TraesCS7A01G146400 chr7D 88.569 1321 94 29 1364 2654 94936906 94938199 0.000000e+00 1550.0
34 TraesCS7A01G146400 chr7D 85.171 1315 105 41 1295 2552 95064687 95063406 0.000000e+00 1266.0
35 TraesCS7A01G146400 chr7D 89.291 719 39 7 3433 4121 496776627 496775917 0.000000e+00 867.0
36 TraesCS7A01G146400 chr7D 85.042 829 53 31 2 819 94935656 94936424 0.000000e+00 778.0
37 TraesCS7A01G146400 chr7D 90.862 580 45 5 6290 6867 94798467 94799040 0.000000e+00 771.0
38 TraesCS7A01G146400 chr7D 86.313 716 65 15 5159 5874 94939513 94940195 0.000000e+00 749.0
39 TraesCS7A01G146400 chr7D 85.230 738 47 22 4173 4881 94938522 94939226 0.000000e+00 702.0
40 TraesCS7A01G146400 chr7D 84.028 720 64 21 5159 5874 94797316 94797988 0.000000e+00 645.0
41 TraesCS7A01G146400 chr7D 86.373 499 59 3 5159 5657 95061555 95061066 2.820000e-148 536.0
42 TraesCS7A01G146400 chr7D 83.061 490 42 26 4390 4873 95062373 95061919 2.310000e-109 407.0
43 TraesCS7A01G146400 chr7D 85.468 406 24 8 5867 6266 94798013 94798389 2.320000e-104 390.0
44 TraesCS7A01G146400 chr7D 79.608 613 59 43 205 766 95065944 95065347 5.030000e-101 379.0
45 TraesCS7A01G146400 chr7D 90.476 252 24 0 4877 5128 94939261 94939512 3.970000e-87 333.0
46 TraesCS7A01G146400 chr7D 90.800 250 9 9 966 1202 94936532 94936780 8.590000e-84 322.0
47 TraesCS7A01G146400 chr7D 88.889 252 28 0 4877 5128 94797064 94797315 1.860000e-80 311.0
48 TraesCS7A01G146400 chr7D 88.148 270 15 7 999 1253 95065075 95064808 8.650000e-79 305.0
49 TraesCS7A01G146400 chr7D 88.940 217 12 4 3231 3435 94938256 94938472 2.460000e-64 257.0
50 TraesCS7A01G146400 chr7D 85.542 249 27 6 2306 2552 94793245 94793486 1.140000e-62 252.0
51 TraesCS7A01G146400 chr7D 80.952 231 26 9 999 1217 252000807 252000583 4.260000e-37 167.0
52 TraesCS7A01G146400 chr7D 93.694 111 4 2 4592 4702 94796782 94796889 5.510000e-36 163.0
53 TraesCS7A01G146400 chr7D 79.435 248 37 11 6599 6839 551593460 551593700 5.510000e-36 163.0
54 TraesCS7A01G146400 chr7D 81.068 206 34 5 6635 6839 44732203 44732404 7.130000e-35 159.0
55 TraesCS7A01G146400 chr7D 85.849 106 15 0 1583 1688 606302100 606302205 5.630000e-21 113.0
56 TraesCS7A01G146400 chr7D 98.000 50 0 1 3154 3202 94938220 94938269 1.230000e-12 86.1
57 TraesCS7A01G146400 chr5B 90.247 728 32 9 3432 4128 292490459 292489740 0.000000e+00 915.0
58 TraesCS7A01G146400 chr5B 81.377 247 36 8 6028 6266 606925946 606925702 7.030000e-45 193.0
59 TraesCS7A01G146400 chr1A 90.264 719 34 11 3432 4121 393997290 393998001 0.000000e+00 907.0
60 TraesCS7A01G146400 chr1A 83.633 611 61 14 6028 6604 550433964 550433359 7.840000e-149 538.0
61 TraesCS7A01G146400 chr1A 81.982 555 77 17 6052 6597 154497151 154497691 3.780000e-122 449.0
62 TraesCS7A01G146400 chr1A 87.288 118 15 0 1100 1217 585036599 585036482 1.200000e-27 135.0
63 TraesCS7A01G146400 chr1A 89.423 104 11 0 1527 1630 527184862 527184965 1.550000e-26 132.0
64 TraesCS7A01G146400 chr1B 90.139 720 30 9 3435 4121 527289883 527289172 0.000000e+00 898.0
65 TraesCS7A01G146400 chr1B 82.764 615 63 17 6028 6604 72712745 72712136 6.140000e-140 508.0
66 TraesCS7A01G146400 chr1B 89.590 317 20 5 2849 3156 65703769 65704081 2.320000e-104 390.0
67 TraesCS7A01G146400 chr1B 81.868 364 51 11 2195 2552 661036656 661037010 6.740000e-75 292.0
68 TraesCS7A01G146400 chr1B 76.972 469 78 25 2700 3155 667496490 667496941 2.470000e-59 241.0
69 TraesCS7A01G146400 chr5A 96.280 457 16 1 2700 3156 331409139 331408684 0.000000e+00 749.0
70 TraesCS7A01G146400 chr5A 84.755 715 65 19 3435 4115 367594791 367594087 0.000000e+00 676.0
71 TraesCS7A01G146400 chr5A 83.306 611 63 14 6028 6604 683521014 683520409 1.700000e-145 527.0
72 TraesCS7A01G146400 chr5A 83.502 297 40 6 2194 2490 508867150 508866863 1.140000e-67 268.0
73 TraesCS7A01G146400 chr5A 81.377 247 36 8 6028 6266 642132728 642132972 7.030000e-45 193.0
74 TraesCS7A01G146400 chr4B 88.144 582 33 12 3433 3986 388972791 388972218 0.000000e+00 660.0
75 TraesCS7A01G146400 chr4B 82.937 252 29 9 975 1213 15457866 15457616 1.500000e-51 215.0
76 TraesCS7A01G146400 chr2B 83.310 719 76 20 3435 4117 647094798 647094088 2.100000e-174 623.0
77 TraesCS7A01G146400 chr2B 85.362 567 47 12 6060 6594 798610390 798609828 7.780000e-154 555.0
78 TraesCS7A01G146400 chr2B 83.443 610 62 13 6029 6604 69136207 69136811 1.310000e-146 531.0
79 TraesCS7A01G146400 chr2B 83.761 468 36 17 2699 3155 781930880 781931318 2.310000e-109 407.0
80 TraesCS7A01G146400 chr2B 83.051 413 35 18 2690 3092 517028872 517029259 6.600000e-90 342.0
81 TraesCS7A01G146400 chr2B 81.974 233 39 2 6636 6867 725605241 725605471 1.950000e-45 195.0
82 TraesCS7A01G146400 chr2B 81.659 229 28 6 975 1190 428974180 428973953 1.970000e-40 178.0
83 TraesCS7A01G146400 chr2B 95.455 110 5 0 4012 4121 53270954 53271063 7.080000e-40 176.0
84 TraesCS7A01G146400 chr2B 79.654 231 41 6 2699 2924 787784229 787784000 1.980000e-35 161.0
85 TraesCS7A01G146400 chr6D 82.256 727 83 26 3431 4121 244542056 244541340 2.760000e-163 586.0
86 TraesCS7A01G146400 chr6D 83.051 177 30 0 2979 3155 358546047 358545871 1.980000e-35 161.0
87 TraesCS7A01G146400 chr4A 82.963 675 56 21 1901 2552 650174612 650173974 7.780000e-154 555.0
88 TraesCS7A01G146400 chr4A 83.306 611 63 14 6028 6604 655969634 655969029 1.700000e-145 527.0
89 TraesCS7A01G146400 chr4A 92.800 125 9 0 3432 3556 321899576 321899452 1.520000e-41 182.0
90 TraesCS7A01G146400 chr6B 83.663 606 63 27 6028 6604 707209629 707209031 7.840000e-149 538.0
91 TraesCS7A01G146400 chr6B 86.624 471 38 10 2698 3157 645982360 645981904 1.330000e-136 497.0
92 TraesCS7A01G146400 chr6B 87.727 220 14 6 3523 3732 7597974 7597758 1.910000e-60 244.0
93 TraesCS7A01G146400 chr6B 78.512 242 43 7 6599 6838 251381499 251381265 4.290000e-32 150.0
94 TraesCS7A01G146400 chr6B 77.917 240 47 4 6599 6838 251543064 251542831 2.000000e-30 145.0
95 TraesCS7A01G146400 chr5D 82.488 611 66 13 6028 6604 377992259 377991656 1.330000e-136 497.0
96 TraesCS7A01G146400 chr5D 89.630 135 14 0 3430 3564 45172579 45172445 9.160000e-39 172.0
97 TraesCS7A01G146400 chr3B 85.806 465 50 11 2701 3155 449096953 449097411 4.820000e-131 479.0
98 TraesCS7A01G146400 chr3B 84.778 473 36 16 2699 3162 752452014 752451569 6.320000e-120 442.0
99 TraesCS7A01G146400 chr3B 84.257 343 26 13 2758 3092 370156931 370156609 6.690000e-80 309.0
100 TraesCS7A01G146400 chr3D 81.784 269 48 1 6599 6867 477915000 477914733 2.490000e-54 224.0
101 TraesCS7A01G146400 chr2D 89.116 147 15 1 3435 3580 81159494 81159640 1.520000e-41 182.0
102 TraesCS7A01G146400 chr2D 84.574 188 19 7 3431 3610 641677127 641676942 1.970000e-40 178.0
103 TraesCS7A01G146400 chr2D 80.822 219 25 12 6637 6848 429467230 429467022 9.220000e-34 156.0
104 TraesCS7A01G146400 chr1D 82.967 182 15 8 1480 1646 429718775 429718955 4.290000e-32 150.0
105 TraesCS7A01G146400 chr1D 77.338 278 35 10 968 1217 427771821 427772098 9.290000e-29 139.0
106 TraesCS7A01G146400 chr3A 100.000 31 0 0 4705 4735 714093567 714093597 2.680000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G146400 chr7A 98097219 98104085 6866 False 12682.000000 12682 100.000000 1 6867 1 chr7A.!!$F1 6866
1 TraesCS7A01G146400 chr7A 98733337 98736995 3658 True 741.000000 1330 82.117333 205 4881 3 chr7A.!!$R4 4676
2 TraesCS7A01G146400 chr7A 98544528 98549367 4839 False 740.542857 1600 89.971143 251 6026 7 chr7A.!!$F4 5775
3 TraesCS7A01G146400 chr7B 49025394 49028111 2717 False 811.333333 1413 86.592667 2 2552 3 chr7B.!!$F4 2550
4 TraesCS7A01G146400 chr7B 49033595 49035274 1679 False 742.133333 1589 91.805000 3344 6026 3 chr7B.!!$F5 2682
5 TraesCS7A01G146400 chr7B 49185604 49190024 4420 True 684.200000 1620 85.271000 345 5661 5 chr7B.!!$R2 5316
6 TraesCS7A01G146400 chr7B 157766263 157766765 502 True 206.500000 303 90.555500 2700 3155 2 chr7B.!!$R3 455
7 TraesCS7A01G146400 chr7D 496775917 496776627 710 True 867.000000 867 89.291000 3433 4121 1 chr7D.!!$R2 688
8 TraesCS7A01G146400 chr7D 94935656 94940195 4539 False 597.137500 1550 89.171250 2 5874 8 chr7D.!!$F5 5872
9 TraesCS7A01G146400 chr7D 95061066 95065944 4878 True 578.600000 1266 84.472200 205 5657 5 chr7D.!!$R3 5452
10 TraesCS7A01G146400 chr7D 94793245 94799040 5795 False 422.000000 771 88.080500 2306 6867 6 chr7D.!!$F4 4561
11 TraesCS7A01G146400 chr5B 292489740 292490459 719 True 915.000000 915 90.247000 3432 4128 1 chr5B.!!$R1 696
12 TraesCS7A01G146400 chr1A 393997290 393998001 711 False 907.000000 907 90.264000 3432 4121 1 chr1A.!!$F2 689
13 TraesCS7A01G146400 chr1A 550433359 550433964 605 True 538.000000 538 83.633000 6028 6604 1 chr1A.!!$R1 576
14 TraesCS7A01G146400 chr1A 154497151 154497691 540 False 449.000000 449 81.982000 6052 6597 1 chr1A.!!$F1 545
15 TraesCS7A01G146400 chr1B 527289172 527289883 711 True 898.000000 898 90.139000 3435 4121 1 chr1B.!!$R2 686
16 TraesCS7A01G146400 chr1B 72712136 72712745 609 True 508.000000 508 82.764000 6028 6604 1 chr1B.!!$R1 576
17 TraesCS7A01G146400 chr5A 367594087 367594791 704 True 676.000000 676 84.755000 3435 4115 1 chr5A.!!$R2 680
18 TraesCS7A01G146400 chr5A 683520409 683521014 605 True 527.000000 527 83.306000 6028 6604 1 chr5A.!!$R4 576
19 TraesCS7A01G146400 chr4B 388972218 388972791 573 True 660.000000 660 88.144000 3433 3986 1 chr4B.!!$R2 553
20 TraesCS7A01G146400 chr2B 647094088 647094798 710 True 623.000000 623 83.310000 3435 4117 1 chr2B.!!$R2 682
21 TraesCS7A01G146400 chr2B 798609828 798610390 562 True 555.000000 555 85.362000 6060 6594 1 chr2B.!!$R4 534
22 TraesCS7A01G146400 chr2B 69136207 69136811 604 False 531.000000 531 83.443000 6029 6604 1 chr2B.!!$F2 575
23 TraesCS7A01G146400 chr6D 244541340 244542056 716 True 586.000000 586 82.256000 3431 4121 1 chr6D.!!$R1 690
24 TraesCS7A01G146400 chr4A 650173974 650174612 638 True 555.000000 555 82.963000 1901 2552 1 chr4A.!!$R2 651
25 TraesCS7A01G146400 chr4A 655969029 655969634 605 True 527.000000 527 83.306000 6028 6604 1 chr4A.!!$R3 576
26 TraesCS7A01G146400 chr6B 707209031 707209629 598 True 538.000000 538 83.663000 6028 6604 1 chr6B.!!$R5 576
27 TraesCS7A01G146400 chr5D 377991656 377992259 603 True 497.000000 497 82.488000 6028 6604 1 chr5D.!!$R2 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 869 0.045469 AAGGCCTCTCCTCCCATCTT 59.955 55.000 5.23 0.00 46.94 2.40 F
1347 1826 0.550914 TGGTTGCAAGAGTTCCCACT 59.449 50.000 0.00 0.00 35.17 4.00 F
1362 1844 1.004044 CCCACTTGCAGATTGGAGAGT 59.996 52.381 10.99 0.00 29.77 3.24 F
2379 3114 0.867753 CGAGTCATCTGCAGGTACGC 60.868 60.000 15.13 10.31 0.00 4.42 F
3697 5598 0.625849 ATTCCCCTTCGCTTCCATGT 59.374 50.000 0.00 0.00 0.00 3.21 F
5352 9083 1.042229 CTGAGAGCCTCATAGCAGCT 58.958 55.000 0.00 0.00 39.92 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2561 0.179124 GGAGCTCTTCGATGCGAACT 60.179 55.0 14.64 0.0 41.05 3.01 R
2379 3114 0.451783 GGAAGTAAATGCCGTGCTGG 59.548 55.0 0.00 0.0 42.50 4.85 R
2913 4117 0.950555 TGCAACTCACACTCCGATGC 60.951 55.0 0.00 0.0 0.00 3.91 R
3772 5673 0.033781 ACCATGCACAAACATGCCAC 59.966 50.0 0.00 0.0 44.98 5.01 R
5358 9089 0.176680 AACTAGCTCCACATCTGCCG 59.823 55.0 0.00 0.0 0.00 5.69 R
6272 10107 0.111045 TAACAAACGCGCACACATCG 60.111 50.0 5.73 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 1.115467 ACACCACAAATTTTGCCCGA 58.885 45.000 9.04 0.00 0.00 5.14
54 56 3.832276 TCACGCATTTGAGTATTTTGGC 58.168 40.909 0.00 0.00 0.00 4.52
149 159 7.735917 TCGATATTCTTCTCTCTCTCTCTCTT 58.264 38.462 0.00 0.00 0.00 2.85
150 160 7.657354 TCGATATTCTTCTCTCTCTCTCTCTTG 59.343 40.741 0.00 0.00 0.00 3.02
184 198 7.889315 TTTGCATTTTTGCTTTTAATTCACG 57.111 28.000 0.00 0.00 35.49 4.35
256 283 2.043652 CTCCCCCAACTGCCATGG 60.044 66.667 7.63 7.63 37.71 3.66
336 365 2.813754 TGCAAGCCTTATCAGTTGTCAC 59.186 45.455 0.00 0.00 0.00 3.67
402 436 4.694982 CCAACAGTCCAAAACTTTGCTTTT 59.305 37.500 0.00 0.00 35.45 2.27
405 439 3.551485 CAGTCCAAAACTTTGCTTTTCCG 59.449 43.478 0.00 0.00 35.45 4.30
433 467 4.756458 GCTCTGCACTGCTCGCCT 62.756 66.667 1.98 0.00 0.00 5.52
473 508 2.757077 CCTCCCCACCTCACCAAC 59.243 66.667 0.00 0.00 0.00 3.77
474 509 2.347490 CTCCCCACCTCACCAACG 59.653 66.667 0.00 0.00 0.00 4.10
475 510 2.446994 TCCCCACCTCACCAACGT 60.447 61.111 0.00 0.00 0.00 3.99
476 511 2.281484 CCCCACCTCACCAACGTG 60.281 66.667 0.00 0.00 41.72 4.49
477 512 2.978010 CCCACCTCACCAACGTGC 60.978 66.667 0.00 0.00 40.04 5.34
478 513 3.345808 CCACCTCACCAACGTGCG 61.346 66.667 0.00 0.00 40.04 5.34
481 537 4.012895 CCTCACCAACGTGCGTGC 62.013 66.667 9.78 0.00 40.04 5.34
525 593 0.326143 GCTTCCTCCTCCTCCTCCTT 60.326 60.000 0.00 0.00 0.00 3.36
544 612 3.560882 CCTTGTCATCTTCTCCCTTTGCT 60.561 47.826 0.00 0.00 0.00 3.91
550 618 0.886563 CTTCTCCCTTTGCTTGCCTG 59.113 55.000 0.00 0.00 0.00 4.85
551 619 0.185901 TTCTCCCTTTGCTTGCCTGT 59.814 50.000 0.00 0.00 0.00 4.00
561 629 1.300388 CTTGCCTGTGTTGCTTGGC 60.300 57.895 0.00 0.00 45.10 4.52
606 684 1.745489 CACGGGTAGGGCTTGCTTC 60.745 63.158 0.00 0.00 0.00 3.86
645 727 0.312102 TGTCACTGTCTGTCTCTGCG 59.688 55.000 0.00 0.00 0.00 5.18
674 766 1.216710 CCTCTGTCTCGCTTGGTCC 59.783 63.158 0.00 0.00 0.00 4.46
712 808 0.620121 CCAGCCTCTTCCCTTCCTCT 60.620 60.000 0.00 0.00 0.00 3.69
716 812 3.831911 CAGCCTCTTCCCTTCCTCTATAG 59.168 52.174 0.00 0.00 0.00 1.31
767 869 0.045469 AAGGCCTCTCCTCCCATCTT 59.955 55.000 5.23 0.00 46.94 2.40
802 915 2.580322 TGCAGGAATCCAAATCCACCTA 59.420 45.455 0.61 0.00 39.55 3.08
803 916 3.217626 GCAGGAATCCAAATCCACCTAG 58.782 50.000 0.61 0.00 39.55 3.02
836 971 5.237236 TCTCTTGTTCCCGGAGTATTTTT 57.763 39.130 0.73 0.00 0.00 1.94
891 1071 2.374170 GGTGGTGTCCCCTTTCTTCTTA 59.626 50.000 0.00 0.00 0.00 2.10
898 1078 6.239800 GGTGTCCCCTTTCTTCTTACTCTTAA 60.240 42.308 0.00 0.00 0.00 1.85
902 1082 9.602568 GTCCCCTTTCTTCTTACTCTTAATTAG 57.397 37.037 0.00 0.00 0.00 1.73
941 1195 8.269317 TCTCAGAGTTTTTGTCTTTAGGGTTAA 58.731 33.333 0.00 0.00 0.00 2.01
942 1196 8.810990 TCAGAGTTTTTGTCTTTAGGGTTAAA 57.189 30.769 0.00 0.00 0.00 1.52
949 1203 9.871175 TTTTTGTCTTTAGGGTTAAATAGGAGT 57.129 29.630 0.00 0.00 0.00 3.85
965 1219 2.104792 AGGAGTTGCTAGTTCACAAGCA 59.895 45.455 0.00 0.00 46.59 3.91
973 1227 4.511454 TGCTAGTTCACAAGCAGTTGTTAG 59.489 41.667 0.00 0.00 45.00 2.34
977 1231 5.433526 AGTTCACAAGCAGTTGTTAGGTTA 58.566 37.500 0.00 0.00 45.00 2.85
994 1248 3.775316 AGGTTACTCTGAATTGGGACGAT 59.225 43.478 0.00 0.00 0.00 3.73
997 1251 5.064834 GGTTACTCTGAATTGGGACGATTTC 59.935 44.000 0.00 0.00 0.00 2.17
1041 1295 1.618447 GGAGGCCAGGAAGGGGTTA 60.618 63.158 5.01 0.00 38.09 2.85
1267 1676 9.376075 CACTTATCACTCATCTGATGTTACTTT 57.624 33.333 16.66 3.09 32.86 2.66
1271 1680 7.776933 TCACTCATCTGATGTTACTTTATGC 57.223 36.000 16.66 0.00 0.00 3.14
1272 1681 7.559486 TCACTCATCTGATGTTACTTTATGCT 58.441 34.615 16.66 0.00 0.00 3.79
1273 1682 7.493645 TCACTCATCTGATGTTACTTTATGCTG 59.506 37.037 16.66 0.00 0.00 4.41
1274 1683 7.279536 CACTCATCTGATGTTACTTTATGCTGT 59.720 37.037 16.66 0.00 0.00 4.40
1275 1684 7.826252 ACTCATCTGATGTTACTTTATGCTGTT 59.174 33.333 16.66 0.00 0.00 3.16
1276 1685 8.201554 TCATCTGATGTTACTTTATGCTGTTC 57.798 34.615 16.66 0.00 0.00 3.18
1277 1686 6.985188 TCTGATGTTACTTTATGCTGTTCC 57.015 37.500 0.00 0.00 0.00 3.62
1278 1687 6.472016 TCTGATGTTACTTTATGCTGTTCCA 58.528 36.000 0.00 0.00 0.00 3.53
1279 1688 6.595326 TCTGATGTTACTTTATGCTGTTCCAG 59.405 38.462 0.00 0.00 34.12 3.86
1280 1689 6.237901 TGATGTTACTTTATGCTGTTCCAGT 58.762 36.000 0.00 0.00 33.43 4.00
1281 1690 6.371548 TGATGTTACTTTATGCTGTTCCAGTC 59.628 38.462 0.00 0.00 33.43 3.51
1297 1706 2.224378 CCAGTCTTCCAGAGAGTTTGCA 60.224 50.000 0.00 0.00 35.84 4.08
1298 1707 3.558746 CCAGTCTTCCAGAGAGTTTGCAT 60.559 47.826 0.00 0.00 35.84 3.96
1329 1808 9.793252 AATTACTATTGCTTAAATGCTTCTGTG 57.207 29.630 0.00 0.00 0.00 3.66
1331 1810 5.711976 ACTATTGCTTAAATGCTTCTGTGGT 59.288 36.000 0.00 0.00 0.00 4.16
1342 1821 2.287248 GCTTCTGTGGTTGCAAGAGTTC 60.287 50.000 0.00 0.00 0.00 3.01
1343 1822 1.967319 TCTGTGGTTGCAAGAGTTCC 58.033 50.000 0.00 0.00 0.00 3.62
1347 1826 0.550914 TGGTTGCAAGAGTTCCCACT 59.449 50.000 0.00 0.00 35.17 4.00
1354 1836 2.787994 CAAGAGTTCCCACTTGCAGAT 58.212 47.619 0.00 0.00 37.32 2.90
1357 1839 1.815003 GAGTTCCCACTTGCAGATTGG 59.185 52.381 3.82 3.82 31.22 3.16
1358 1840 1.425066 AGTTCCCACTTGCAGATTGGA 59.575 47.619 10.99 2.95 29.77 3.53
1359 1841 1.815003 GTTCCCACTTGCAGATTGGAG 59.185 52.381 10.99 0.00 29.77 3.86
1360 1842 1.361204 TCCCACTTGCAGATTGGAGA 58.639 50.000 10.99 5.15 29.77 3.71
1361 1843 1.280133 TCCCACTTGCAGATTGGAGAG 59.720 52.381 10.99 0.00 29.77 3.20
1362 1844 1.004044 CCCACTTGCAGATTGGAGAGT 59.996 52.381 10.99 0.00 29.77 3.24
1363 1845 2.082231 CCACTTGCAGATTGGAGAGTG 58.918 52.381 4.66 4.48 35.48 3.51
1364 1846 2.551721 CCACTTGCAGATTGGAGAGTGT 60.552 50.000 9.40 0.00 34.26 3.55
1365 1847 3.306989 CCACTTGCAGATTGGAGAGTGTA 60.307 47.826 9.40 0.00 34.26 2.90
1437 1919 6.265577 ACAGATGTTTTAACACTCTTGCAAC 58.734 36.000 0.00 0.00 42.51 4.17
1498 2118 9.160496 TGCTTTCAAGTTTCAACAATTGTAAAT 57.840 25.926 12.39 0.00 0.00 1.40
1533 2159 4.612259 GCACATGCTGTCTCTTTAACAGTG 60.612 45.833 5.29 0.00 44.79 3.66
1671 2297 1.153168 CGTGGGGCTCGAAATGGAT 60.153 57.895 0.00 0.00 0.00 3.41
1747 2431 6.667370 TGTTGTTGAGTAATGCATGTGTTAG 58.333 36.000 0.00 0.00 0.00 2.34
1759 2443 5.939447 TGCATGTGTTAGAATATGGATGGA 58.061 37.500 0.00 0.00 0.00 3.41
1769 2453 9.624373 GTTAGAATATGGATGGATGCTAATGAT 57.376 33.333 0.00 0.00 0.00 2.45
1785 2479 6.873605 TGCTAATGATATACCATTCAACTCGG 59.126 38.462 0.00 0.00 37.81 4.63
1786 2480 6.183360 GCTAATGATATACCATTCAACTCGGC 60.183 42.308 0.00 0.00 37.81 5.54
1817 2511 2.159071 TCGGTGAACGGAGAGACAAAAA 60.159 45.455 0.00 0.00 44.45 1.94
1822 2516 4.807304 GTGAACGGAGAGACAAAAACTGTA 59.193 41.667 0.00 0.00 38.84 2.74
1825 2519 4.369182 ACGGAGAGACAAAAACTGTACTG 58.631 43.478 0.00 0.00 38.84 2.74
1867 2561 4.081087 GCCTGTGACTATCTCCTAAAACCA 60.081 45.833 0.00 0.00 0.00 3.67
1957 2654 5.221880 CCGAACAATCTTGATTTCTGCAAA 58.778 37.500 0.00 0.00 0.00 3.68
2057 2772 1.893919 GAAGAGGAAGGAGCCGCACT 61.894 60.000 0.00 0.00 0.00 4.40
2071 2786 1.519719 GCACTGCGAGGAGGAAGAT 59.480 57.895 0.00 0.00 0.00 2.40
2096 2814 1.215647 GAGGACAACGACGATGCCT 59.784 57.895 16.70 16.70 0.00 4.75
2155 2873 1.373748 GCTGCACCGGAAGTTCGTA 60.374 57.895 9.46 0.00 0.00 3.43
2379 3114 0.867753 CGAGTCATCTGCAGGTACGC 60.868 60.000 15.13 10.31 0.00 4.42
2415 3158 3.274288 CTTCCATCACCACCTTTAGCTC 58.726 50.000 0.00 0.00 0.00 4.09
2416 3159 2.551270 TCCATCACCACCTTTAGCTCT 58.449 47.619 0.00 0.00 0.00 4.09
2417 3160 3.719871 TCCATCACCACCTTTAGCTCTA 58.280 45.455 0.00 0.00 0.00 2.43
2418 3161 3.706594 TCCATCACCACCTTTAGCTCTAG 59.293 47.826 0.00 0.00 0.00 2.43
2606 3596 6.015940 AGCAGAGCTTAATTTGGTATTATGGC 60.016 38.462 0.00 0.00 33.89 4.40
2650 3640 9.914834 ATGGTATTTTGGTATACATACAACTGT 57.085 29.630 5.01 0.00 34.98 3.55
2651 3641 9.742144 TGGTATTTTGGTATACATACAACTGTT 57.258 29.630 5.01 0.00 34.98 3.16
2705 3695 7.227910 TGTGCTACCCTTTTTAACAAACTAGAG 59.772 37.037 0.00 0.00 0.00 2.43
2774 3978 7.227512 ACTGCGCTGAAAAATAATCTAGCTAAT 59.772 33.333 21.92 0.00 0.00 1.73
2775 3979 7.355017 TGCGCTGAAAAATAATCTAGCTAATG 58.645 34.615 9.73 0.00 0.00 1.90
2778 3982 8.768955 CGCTGAAAAATAATCTAGCTAATGTCT 58.231 33.333 0.00 0.00 0.00 3.41
2788 3992 8.788325 AATCTAGCTAATGTCTTTACGGTTTT 57.212 30.769 0.00 0.00 0.00 2.43
2790 3994 8.248117 TCTAGCTAATGTCTTTACGGTTTTTC 57.752 34.615 0.00 0.00 0.00 2.29
2791 3995 6.250344 AGCTAATGTCTTTACGGTTTTTCC 57.750 37.500 0.00 0.00 0.00 3.13
2792 3996 6.002082 AGCTAATGTCTTTACGGTTTTTCCT 58.998 36.000 0.00 0.00 0.00 3.36
2793 3997 6.072673 AGCTAATGTCTTTACGGTTTTTCCTG 60.073 38.462 0.00 0.00 0.00 3.86
2794 3998 6.293790 GCTAATGTCTTTACGGTTTTTCCTGT 60.294 38.462 0.00 0.00 0.00 4.00
2796 4000 6.796705 ATGTCTTTACGGTTTTTCCTGTAG 57.203 37.500 0.00 0.00 31.15 2.74
2797 4001 4.512571 TGTCTTTACGGTTTTTCCTGTAGC 59.487 41.667 0.00 0.00 31.15 3.58
2798 4002 4.512571 GTCTTTACGGTTTTTCCTGTAGCA 59.487 41.667 0.00 0.00 31.15 3.49
2799 4003 5.180680 GTCTTTACGGTTTTTCCTGTAGCAT 59.819 40.000 0.00 0.00 31.15 3.79
2801 4005 2.159382 ACGGTTTTTCCTGTAGCATGG 58.841 47.619 0.00 0.00 0.00 3.66
2802 4006 2.159382 CGGTTTTTCCTGTAGCATGGT 58.841 47.619 1.62 1.62 0.00 3.55
2803 4007 3.244630 ACGGTTTTTCCTGTAGCATGGTA 60.245 43.478 0.00 0.00 0.00 3.25
2804 4008 3.754323 CGGTTTTTCCTGTAGCATGGTAA 59.246 43.478 6.12 0.00 0.00 2.85
2805 4009 4.398044 CGGTTTTTCCTGTAGCATGGTAAT 59.602 41.667 6.12 0.00 0.00 1.89
2806 4010 5.105917 CGGTTTTTCCTGTAGCATGGTAATT 60.106 40.000 6.12 0.00 0.00 1.40
2807 4011 6.571537 CGGTTTTTCCTGTAGCATGGTAATTT 60.572 38.462 6.12 0.00 0.00 1.82
2808 4012 7.158697 GGTTTTTCCTGTAGCATGGTAATTTT 58.841 34.615 6.12 0.00 0.00 1.82
2809 4013 7.330946 GGTTTTTCCTGTAGCATGGTAATTTTC 59.669 37.037 6.12 0.00 0.00 2.29
2810 4014 7.775053 TTTTCCTGTAGCATGGTAATTTTCT 57.225 32.000 6.12 0.00 0.00 2.52
2811 4015 7.775053 TTTCCTGTAGCATGGTAATTTTCTT 57.225 32.000 6.12 0.00 0.00 2.52
2812 4016 8.871629 TTTCCTGTAGCATGGTAATTTTCTTA 57.128 30.769 6.12 0.00 0.00 2.10
2813 4017 9.474313 TTTCCTGTAGCATGGTAATTTTCTTAT 57.526 29.630 6.12 0.00 0.00 1.73
2814 4018 8.677148 TCCTGTAGCATGGTAATTTTCTTATC 57.323 34.615 6.12 0.00 0.00 1.75
2815 4019 8.271458 TCCTGTAGCATGGTAATTTTCTTATCA 58.729 33.333 6.12 0.00 0.00 2.15
2816 4020 8.902806 CCTGTAGCATGGTAATTTTCTTATCAA 58.097 33.333 6.12 0.00 0.00 2.57
2817 4021 9.722056 CTGTAGCATGGTAATTTTCTTATCAAC 57.278 33.333 6.12 0.00 0.00 3.18
2818 4022 9.237187 TGTAGCATGGTAATTTTCTTATCAACA 57.763 29.630 6.12 0.00 0.00 3.33
2858 4062 6.952773 ATGTGTATCTCTCTGAGTAAGTCC 57.047 41.667 4.32 0.00 0.00 3.85
2859 4063 5.816682 TGTGTATCTCTCTGAGTAAGTCCA 58.183 41.667 4.32 0.00 0.00 4.02
2860 4064 6.246163 TGTGTATCTCTCTGAGTAAGTCCAA 58.754 40.000 4.32 0.00 0.00 3.53
2861 4065 6.719829 TGTGTATCTCTCTGAGTAAGTCCAAA 59.280 38.462 4.32 0.00 0.00 3.28
2862 4066 7.030768 GTGTATCTCTCTGAGTAAGTCCAAAC 58.969 42.308 4.32 0.00 0.00 2.93
2863 4067 6.948886 TGTATCTCTCTGAGTAAGTCCAAACT 59.051 38.462 4.32 0.00 37.32 2.66
2864 4068 5.713792 TCTCTCTGAGTAAGTCCAAACTG 57.286 43.478 4.32 0.00 35.36 3.16
2865 4069 5.386060 TCTCTCTGAGTAAGTCCAAACTGA 58.614 41.667 4.32 0.00 35.36 3.41
2866 4070 5.833667 TCTCTCTGAGTAAGTCCAAACTGAA 59.166 40.000 4.32 0.00 35.36 3.02
2867 4071 6.015856 TCTCTCTGAGTAAGTCCAAACTGAAG 60.016 42.308 4.32 0.00 35.36 3.02
2868 4072 4.632153 TCTGAGTAAGTCCAAACTGAAGC 58.368 43.478 0.00 0.00 35.36 3.86
2869 4073 4.100963 TCTGAGTAAGTCCAAACTGAAGCA 59.899 41.667 0.00 0.00 35.36 3.91
2870 4074 4.776349 TGAGTAAGTCCAAACTGAAGCAA 58.224 39.130 0.00 0.00 35.36 3.91
2871 4075 5.189928 TGAGTAAGTCCAAACTGAAGCAAA 58.810 37.500 0.00 0.00 35.36 3.68
2872 4076 5.650266 TGAGTAAGTCCAAACTGAAGCAAAA 59.350 36.000 0.00 0.00 35.36 2.44
2873 4077 6.321181 TGAGTAAGTCCAAACTGAAGCAAAAT 59.679 34.615 0.00 0.00 35.36 1.82
2874 4078 7.500892 TGAGTAAGTCCAAACTGAAGCAAAATA 59.499 33.333 0.00 0.00 35.36 1.40
2875 4079 8.232913 AGTAAGTCCAAACTGAAGCAAAATAA 57.767 30.769 0.00 0.00 35.36 1.40
2876 4080 8.691797 AGTAAGTCCAAACTGAAGCAAAATAAA 58.308 29.630 0.00 0.00 35.36 1.40
2877 4081 9.308318 GTAAGTCCAAACTGAAGCAAAATAAAA 57.692 29.630 0.00 0.00 35.36 1.52
2878 4082 7.770801 AGTCCAAACTGAAGCAAAATAAAAC 57.229 32.000 0.00 0.00 33.32 2.43
2879 4083 7.327214 AGTCCAAACTGAAGCAAAATAAAACA 58.673 30.769 0.00 0.00 33.32 2.83
2880 4084 7.821846 AGTCCAAACTGAAGCAAAATAAAACAA 59.178 29.630 0.00 0.00 33.32 2.83
2881 4085 8.447053 GTCCAAACTGAAGCAAAATAAAACAAA 58.553 29.630 0.00 0.00 0.00 2.83
2882 4086 9.003658 TCCAAACTGAAGCAAAATAAAACAAAA 57.996 25.926 0.00 0.00 0.00 2.44
2883 4087 9.786105 CCAAACTGAAGCAAAATAAAACAAAAT 57.214 25.926 0.00 0.00 0.00 1.82
2895 4099 9.705471 AAAATAAAACAAAATATGATGCATGCG 57.295 25.926 14.09 0.00 0.00 4.73
2896 4100 8.645730 AATAAAACAAAATATGATGCATGCGA 57.354 26.923 14.09 2.48 0.00 5.10
2897 4101 8.821147 ATAAAACAAAATATGATGCATGCGAT 57.179 26.923 14.09 7.77 0.00 4.58
2898 4102 9.911138 ATAAAACAAAATATGATGCATGCGATA 57.089 25.926 14.09 9.55 0.00 2.92
2911 4115 5.283294 TGCATGCGATATTTTCTTTCATGG 58.717 37.500 14.09 0.00 32.76 3.66
2913 4117 5.628193 GCATGCGATATTTTCTTTCATGGAG 59.372 40.000 0.00 0.00 32.76 3.86
2917 4121 5.855395 GCGATATTTTCTTTCATGGAGCATC 59.145 40.000 0.00 0.00 0.00 3.91
2940 4310 2.227149 GAGTGTGAGTTGCATGCATCAA 59.773 45.455 26.26 13.98 0.00 2.57
2947 4317 5.407387 GTGAGTTGCATGCATCAAATTTCTT 59.593 36.000 26.26 6.99 0.00 2.52
2956 4326 7.148205 GCATGCATCAAATTTCTTTTGGGTTAT 60.148 33.333 14.21 0.00 44.07 1.89
2959 4329 9.784531 TGCATCAAATTTCTTTTGGGTTATTAA 57.215 25.926 0.00 0.00 44.07 1.40
2963 4333 9.838339 TCAAATTTCTTTTGGGTTATTAAAGCA 57.162 25.926 0.00 0.00 44.07 3.91
2970 4340 7.713073 TCTTTTGGGTTATTAAAGCAAACCTTG 59.287 33.333 3.70 0.00 41.95 3.61
3025 4395 0.979665 CTTGGTGGAGGAGCTCTCAA 59.020 55.000 14.64 8.02 44.19 3.02
3038 4408 3.445008 AGCTCTCAACCTGTAGATCCAA 58.555 45.455 0.00 0.00 0.00 3.53
3046 4416 5.132648 TCAACCTGTAGATCCAATGGCTATT 59.867 40.000 0.00 0.00 0.00 1.73
3052 4422 7.310921 CCTGTAGATCCAATGGCTATTGTAGAT 60.311 40.741 19.92 15.79 41.68 1.98
3053 4423 8.664669 TGTAGATCCAATGGCTATTGTAGATA 57.335 34.615 19.92 6.51 41.68 1.98
3073 4453 9.757227 GTAGATAGATCTTGTATATCCAATGGC 57.243 37.037 0.00 0.00 38.32 4.40
3118 4498 2.682352 GCAAGGAGAAGGCAGAGAATTC 59.318 50.000 0.00 0.00 0.00 2.17
3122 4502 6.176183 CAAGGAGAAGGCAGAGAATTCTTTA 58.824 40.000 9.87 0.00 33.53 1.85
3144 4524 2.339769 AGTGGGGGCTAGCTATTTAGG 58.660 52.381 15.72 0.00 0.00 2.69
3204 4658 0.972134 TGAGTTCAGCTGGTCTGGAG 59.028 55.000 15.13 0.00 43.06 3.86
3208 4662 1.070758 GTTCAGCTGGTCTGGAGACAA 59.929 52.381 15.13 0.00 46.47 3.18
3209 4663 1.423584 TCAGCTGGTCTGGAGACAAA 58.576 50.000 15.13 0.00 46.47 2.83
3210 4664 1.768275 TCAGCTGGTCTGGAGACAAAA 59.232 47.619 15.13 0.00 46.47 2.44
3211 4665 1.876156 CAGCTGGTCTGGAGACAAAAC 59.124 52.381 5.57 0.00 46.47 2.43
3212 4666 1.490490 AGCTGGTCTGGAGACAAAACA 59.510 47.619 8.99 0.00 46.47 2.83
3213 4667 2.107204 AGCTGGTCTGGAGACAAAACAT 59.893 45.455 8.99 0.00 46.47 2.71
3214 4668 3.327757 AGCTGGTCTGGAGACAAAACATA 59.672 43.478 8.99 0.00 46.47 2.29
3215 4669 4.018960 AGCTGGTCTGGAGACAAAACATAT 60.019 41.667 8.99 0.00 46.47 1.78
3216 4670 4.095483 GCTGGTCTGGAGACAAAACATATG 59.905 45.833 8.99 0.00 46.47 1.78
3323 5080 8.919145 CATATTATTCCTCCCCACTAGTAGATC 58.081 40.741 3.59 0.00 0.00 2.75
3544 5431 4.810191 TTGGTTGCCACTAAAAACTGTT 57.190 36.364 0.00 0.00 30.78 3.16
3665 5566 1.795286 GCATCGCTATCTTTTCCCTCG 59.205 52.381 0.00 0.00 0.00 4.63
3697 5598 0.625849 ATTCCCCTTCGCTTCCATGT 59.374 50.000 0.00 0.00 0.00 3.21
3718 5619 3.669344 CGTTGCCACCGCCATGTT 61.669 61.111 0.00 0.00 0.00 2.71
3772 5673 2.349969 TAGTAGGCGTCGCATGGCTG 62.350 60.000 20.50 0.00 40.50 4.85
3827 5757 1.113517 GCTGCCTGGATGCATGGATT 61.114 55.000 2.46 0.00 41.16 3.01
3860 5790 1.793134 GCATGATACAGCCAGCCAGC 61.793 60.000 0.00 0.00 0.00 4.85
3900 5831 2.401766 CCGGTCTGTTGCTGGATGC 61.402 63.158 0.00 0.00 43.25 3.91
3981 5915 5.282510 GCTAGTCAGCTAATGTTACGTCAT 58.717 41.667 0.00 0.00 44.93 3.06
4123 6062 4.265073 ACTTTGCTATCAAACAGGGCTAG 58.735 43.478 0.00 0.00 37.28 3.42
4154 6093 7.489757 GCTACATTGTTTCAGTTTTGTAAACCA 59.510 33.333 0.00 0.00 33.21 3.67
4309 6259 8.255905 TCCAGCTTACTAAACTATGTTTACCTC 58.744 37.037 0.00 0.00 0.00 3.85
4593 8213 1.594397 TGCGATTGTGATCTGCGATTC 59.406 47.619 0.00 0.00 35.79 2.52
4669 8289 1.443194 GCATCACAACAAGCCAGCG 60.443 57.895 0.00 0.00 0.00 5.18
4751 8371 7.557719 ACTTCATAGTTATCATCAACCCTTTGG 59.442 37.037 0.00 0.00 33.06 3.28
4782 8402 2.216898 GCTCCTCCATCTTTCAATCCG 58.783 52.381 0.00 0.00 0.00 4.18
4889 8548 2.695359 TGGCGAAGTAAGCTTACAAGG 58.305 47.619 32.48 22.25 36.12 3.61
4894 8553 4.331717 GCGAAGTAAGCTTACAAGGCAATA 59.668 41.667 32.48 0.00 36.12 1.90
4905 8564 2.031157 ACAAGGCAATAAACACGCAGAC 60.031 45.455 0.00 0.00 0.00 3.51
4908 8567 2.226437 AGGCAATAAACACGCAGACTTG 59.774 45.455 0.00 0.00 0.00 3.16
5004 8663 2.700371 TCTGTGCTCTGTCTTTTCTGGA 59.300 45.455 0.00 0.00 0.00 3.86
5027 8686 1.709147 GCTCTGGCCAACACTATGCG 61.709 60.000 7.01 0.00 0.00 4.73
5132 8860 6.364701 CCCATCCATCAGTAGGAATACAAAA 58.635 40.000 0.00 0.00 38.93 2.44
5236 8964 1.749063 ACATCTCGTTCGATGGTGCTA 59.251 47.619 13.60 0.00 43.92 3.49
5266 8994 1.742761 GCTGGATGCTAGCTTTGTCA 58.257 50.000 17.23 8.75 38.14 3.58
5352 9083 1.042229 CTGAGAGCCTCATAGCAGCT 58.958 55.000 0.00 0.00 39.92 4.24
5393 9124 6.404954 GGAGCTAGTTCTTCTGGTAGTACAAG 60.405 46.154 6.54 0.00 0.00 3.16
5408 9139 2.123632 AAGGCTGCTCCCTCCTCA 59.876 61.111 0.00 0.00 32.93 3.86
5511 9245 4.170468 AGACCAAAGACTGAACAATGGT 57.830 40.909 0.00 0.00 43.50 3.55
5523 9257 7.119846 AGACTGAACAATGGTGATTTTAGCTAC 59.880 37.037 0.00 0.00 0.00 3.58
5644 9391 4.722220 TGATGGCCTTCTCAATTCCATAG 58.278 43.478 18.67 0.00 37.63 2.23
5663 9410 8.669055 TCCATAGTAAAAGTGGTAAGAACCTA 57.331 34.615 0.00 0.00 46.91 3.08
5664 9411 9.275572 TCCATAGTAAAAGTGGTAAGAACCTAT 57.724 33.333 0.00 0.00 46.91 2.57
5674 9421 9.561069 AAGTGGTAAGAACCTATAATATGCTTG 57.439 33.333 0.00 0.00 46.91 4.01
5748 9498 8.853345 CATCTTTCCTTTCAAATCATTTGTACG 58.147 33.333 9.98 0.00 41.36 3.67
5838 9593 3.138304 TGATTTCAACACAGGAGAACCG 58.862 45.455 0.00 0.00 41.83 4.44
5868 9623 0.851469 ACGATACTCCCCCTCTAGCA 59.149 55.000 0.00 0.00 0.00 3.49
5874 9633 1.003051 TCCCCCTCTAGCAACCTCC 59.997 63.158 0.00 0.00 0.00 4.30
5875 9634 1.306997 CCCCCTCTAGCAACCTCCA 60.307 63.158 0.00 0.00 0.00 3.86
5876 9635 1.627297 CCCCCTCTAGCAACCTCCAC 61.627 65.000 0.00 0.00 0.00 4.02
5877 9636 0.909610 CCCCTCTAGCAACCTCCACA 60.910 60.000 0.00 0.00 0.00 4.17
5878 9637 0.539051 CCCTCTAGCAACCTCCACAG 59.461 60.000 0.00 0.00 0.00 3.66
5879 9638 1.561643 CCTCTAGCAACCTCCACAGA 58.438 55.000 0.00 0.00 0.00 3.41
5880 9639 1.205893 CCTCTAGCAACCTCCACAGAC 59.794 57.143 0.00 0.00 0.00 3.51
5881 9640 1.205893 CTCTAGCAACCTCCACAGACC 59.794 57.143 0.00 0.00 0.00 3.85
5883 9642 0.976641 TAGCAACCTCCACAGACCTG 59.023 55.000 0.00 0.00 0.00 4.00
5884 9643 1.302832 GCAACCTCCACAGACCTGG 60.303 63.158 1.82 0.00 34.19 4.45
5891 9683 2.674380 CACAGACCTGGGCAAGCC 60.674 66.667 0.47 1.52 34.19 4.35
5905 9697 0.886490 CAAGCCATATCCGACCTGCC 60.886 60.000 0.00 0.00 0.00 4.85
6004 9801 3.450115 GGAGCCGTCGTGCCTAGT 61.450 66.667 2.61 0.00 0.00 2.57
6026 9823 2.798148 GAAAGCCCGCGGAAGGAAGA 62.798 60.000 30.73 0.00 0.00 2.87
6039 9836 0.471211 AGGAAGAAGGGTGGACACGA 60.471 55.000 0.00 0.00 0.00 4.35
6120 9919 0.744874 GACCGGACCGAGATCATGAA 59.255 55.000 17.49 0.00 0.00 2.57
6135 9934 5.427806 AGATCATGAAGGTCCTGATTTCAGA 59.572 40.000 9.15 0.00 46.59 3.27
6242 10077 1.836999 TAGCAAGGTGGGCGACATGT 61.837 55.000 0.00 0.00 36.08 3.21
6248 10083 1.591703 GTGGGCGACATGTGAGAGA 59.408 57.895 1.15 0.00 0.00 3.10
6271 10106 4.760047 CGGCAAGGTGGGACTCGG 62.760 72.222 0.00 0.00 0.00 4.63
6274 10109 3.691342 CAAGGTGGGACTCGGCGA 61.691 66.667 10.14 10.14 0.00 5.54
6275 10110 2.683933 AAGGTGGGACTCGGCGAT 60.684 61.111 11.27 0.00 0.00 4.58
6277 10116 3.771160 GGTGGGACTCGGCGATGT 61.771 66.667 11.27 11.04 0.00 3.06
6279 10118 2.994995 TGGGACTCGGCGATGTGT 60.995 61.111 11.27 4.70 0.00 3.72
6299 10188 2.013400 TGCGCGTTTGTTATCCATGAT 58.987 42.857 8.43 0.00 0.00 2.45
6300 10189 2.223226 TGCGCGTTTGTTATCCATGATG 60.223 45.455 8.43 0.00 0.00 3.07
6301 10190 2.031560 GCGCGTTTGTTATCCATGATGA 59.968 45.455 8.43 0.00 0.00 2.92
6302 10191 3.846023 GCGCGTTTGTTATCCATGATGAG 60.846 47.826 8.43 0.00 0.00 2.90
6303 10192 3.621794 GCGTTTGTTATCCATGATGAGC 58.378 45.455 0.00 0.00 0.00 4.26
6305 10194 3.879295 CGTTTGTTATCCATGATGAGCCT 59.121 43.478 0.00 0.00 0.00 4.58
6306 10195 4.260907 CGTTTGTTATCCATGATGAGCCTG 60.261 45.833 0.00 0.00 0.00 4.85
6309 10198 2.551459 GTTATCCATGATGAGCCTGCAC 59.449 50.000 0.00 0.00 0.00 4.57
6312 10201 1.770061 TCCATGATGAGCCTGCACATA 59.230 47.619 2.00 0.00 0.00 2.29
6332 10222 7.253420 GCACATATGTTCATTAGCAGTTTTTCG 60.253 37.037 5.37 0.00 0.00 3.46
6355 10245 6.200854 TCGTATTGCATGCAAGTAATGTAGAG 59.799 38.462 34.15 18.03 39.47 2.43
6477 10367 5.486735 TCAAACCGTGTTTTCCTCCTATA 57.513 39.130 0.03 0.00 0.00 1.31
6506 10398 4.801330 TCCTGCTCGACTGAATAAAAGA 57.199 40.909 0.00 0.00 0.00 2.52
6547 10439 5.790096 TGATGGCCCATGATTATAGGAAGTA 59.210 40.000 0.00 0.00 0.00 2.24
6571 10463 5.952947 AGGCGCTATTATATCTACTCCTTGT 59.047 40.000 7.64 0.00 0.00 3.16
6604 10497 2.973945 ACTTTGCCTGATTAGTCGGAC 58.026 47.619 0.00 0.00 32.11 4.79
6606 10499 3.767673 ACTTTGCCTGATTAGTCGGACTA 59.232 43.478 13.70 13.70 32.11 2.59
6642 10535 1.904287 CGGAATTGTCTGGAAACCCA 58.096 50.000 0.00 0.00 0.00 4.51
6650 10543 4.323477 TGGAAACCCAGCGGTCCG 62.323 66.667 6.99 6.99 43.71 4.79
6652 10545 2.031465 GAAACCCAGCGGTCCGAA 59.969 61.111 17.49 0.00 43.71 4.30
6654 10547 4.699522 AACCCAGCGGTCCGAAGC 62.700 66.667 17.49 0.00 43.71 3.86
6656 10549 4.821589 CCCAGCGGTCCGAAGCTC 62.822 72.222 17.49 0.00 42.52 4.09
6664 10557 1.596895 GGTCCGAAGCTCGTCTCCTT 61.597 60.000 0.00 0.00 38.40 3.36
6668 10561 3.315972 GAAGCTCGTCTCCTTCGTC 57.684 57.895 0.00 0.00 0.00 4.20
6673 10566 1.004080 TCGTCTCCTTCGTCGGACT 60.004 57.895 6.57 0.00 0.00 3.85
6678 10571 0.811915 CTCCTTCGTCGGACTGATGT 59.188 55.000 6.57 0.00 35.01 3.06
6733 10626 3.069158 GTGCCTAGCCCGACTATTTAAGA 59.931 47.826 0.00 0.00 0.00 2.10
6760 10653 2.045634 GCACCGAAACCCTACCCC 60.046 66.667 0.00 0.00 0.00 4.95
6767 10660 0.327259 GAAACCCTACCCCTCCACAC 59.673 60.000 0.00 0.00 0.00 3.82
6775 10668 1.821088 ACCCCTCCACACTTTTCTCT 58.179 50.000 0.00 0.00 0.00 3.10
6782 10675 1.270625 CCACACTTTTCTCTGCCCGTA 60.271 52.381 0.00 0.00 0.00 4.02
6785 10678 0.677842 ACTTTTCTCTGCCCGTACGT 59.322 50.000 15.21 0.00 0.00 3.57
6811 10704 2.750350 CCGCTTTCCACTCCCTGT 59.250 61.111 0.00 0.00 0.00 4.00
6818 10711 3.402681 CCACTCCCTGTCCGCCAT 61.403 66.667 0.00 0.00 0.00 4.40
6840 10733 1.307430 TAGTAGGCATGCCCCCACA 60.307 57.895 33.14 12.21 36.58 4.17
6855 10748 0.616371 CCACACCGTTGGATAAGGGA 59.384 55.000 5.84 0.00 42.99 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 5.863397 CCAAAATACTCAAATGCGTGATGTT 59.137 36.000 0.00 0.00 0.00 2.71
150 160 5.636837 AGCAAAAATGCAAAATGATGATGC 58.363 33.333 3.41 0.00 40.45 3.91
256 283 1.134907 CAGGCCACAATCTTCCAATGC 60.135 52.381 5.01 0.00 0.00 3.56
323 352 4.814234 GTGGTGACAAGTGACAACTGATAA 59.186 41.667 0.81 0.00 46.06 1.75
324 353 4.100963 AGTGGTGACAAGTGACAACTGATA 59.899 41.667 0.00 0.00 46.06 2.15
326 355 2.236146 AGTGGTGACAAGTGACAACTGA 59.764 45.455 0.00 0.00 46.06 3.41
328 357 2.420129 GGAGTGGTGACAAGTGACAACT 60.420 50.000 0.00 0.00 46.06 3.16
329 358 1.940613 GGAGTGGTGACAAGTGACAAC 59.059 52.381 0.00 0.00 46.06 3.32
336 365 1.051812 AGAGTGGGAGTGGTGACAAG 58.948 55.000 0.00 0.00 46.06 3.16
402 436 3.889044 GAGCGAGATGGCGACGGA 61.889 66.667 0.00 0.00 38.18 4.69
405 439 2.959071 GCAGAGCGAGATGGCGAC 60.959 66.667 0.00 0.00 38.18 5.19
433 467 1.133606 GTTGTTTGGGGAGGTGGAAGA 60.134 52.381 0.00 0.00 0.00 2.87
525 593 3.415212 CAAGCAAAGGGAGAAGATGACA 58.585 45.455 0.00 0.00 0.00 3.58
544 612 2.813901 GCCAAGCAACACAGGCAA 59.186 55.556 0.00 0.00 46.26 4.52
550 618 3.595758 AGCCACGCCAAGCAACAC 61.596 61.111 0.00 0.00 0.00 3.32
551 619 3.594775 CAGCCACGCCAAGCAACA 61.595 61.111 0.00 0.00 0.00 3.33
561 629 2.814341 CAGCTCAGCTCAGCCACG 60.814 66.667 5.75 0.00 40.65 4.94
645 727 3.430556 GCGAGACAGAGGAAAGAAGAAAC 59.569 47.826 0.00 0.00 0.00 2.78
674 766 2.221169 GGGAAAGCAAAAGGCCAAAAG 58.779 47.619 5.01 0.00 46.50 2.27
712 808 1.889170 CGCAGCTCCTCCATCACTATA 59.111 52.381 0.00 0.00 0.00 1.31
716 812 2.202987 CCGCAGCTCCTCCATCAC 60.203 66.667 0.00 0.00 0.00 3.06
784 897 4.375313 ACTCTAGGTGGATTTGGATTCCT 58.625 43.478 3.95 0.00 34.17 3.36
803 916 3.821600 GGGAACAAGAGAGGGAAAAACTC 59.178 47.826 0.00 0.00 35.20 3.01
891 1071 4.065789 GCTAATGGCGGCTAATTAAGAGT 58.934 43.478 11.43 0.00 0.00 3.24
941 1195 4.938226 GCTTGTGAACTAGCAACTCCTATT 59.062 41.667 11.26 0.00 42.75 1.73
942 1196 4.508662 GCTTGTGAACTAGCAACTCCTAT 58.491 43.478 11.26 0.00 42.75 2.57
965 1219 6.043938 TCCCAATTCAGAGTAACCTAACAACT 59.956 38.462 0.00 0.00 0.00 3.16
973 1227 3.604875 TCGTCCCAATTCAGAGTAACC 57.395 47.619 0.00 0.00 0.00 2.85
977 1231 3.262420 CGAAATCGTCCCAATTCAGAGT 58.738 45.455 0.00 0.00 34.11 3.24
994 1248 0.239879 GCGTCCAAAAGCATCCGAAA 59.760 50.000 0.00 0.00 0.00 3.46
997 1251 1.656818 ATGGCGTCCAAAAGCATCCG 61.657 55.000 2.68 0.00 36.95 4.18
1041 1295 1.290134 GGAACTGGTCCCTCTCCATT 58.710 55.000 0.00 0.00 41.10 3.16
1237 1582 8.853077 AACATCAGATGAGTGATAAGTGAAAA 57.147 30.769 17.81 0.00 35.30 2.29
1250 1659 7.783090 ACAGCATAAAGTAACATCAGATGAG 57.217 36.000 17.81 0.00 0.00 2.90
1272 1681 2.964209 ACTCTCTGGAAGACTGGAACA 58.036 47.619 0.00 0.00 38.67 3.18
1273 1682 4.061596 CAAACTCTCTGGAAGACTGGAAC 58.938 47.826 0.00 0.00 38.67 3.62
1274 1683 3.495100 GCAAACTCTCTGGAAGACTGGAA 60.495 47.826 0.00 0.00 38.67 3.53
1275 1684 2.037772 GCAAACTCTCTGGAAGACTGGA 59.962 50.000 0.00 0.00 38.67 3.86
1276 1685 2.224378 TGCAAACTCTCTGGAAGACTGG 60.224 50.000 0.00 0.00 38.67 4.00
1277 1686 3.117491 TGCAAACTCTCTGGAAGACTG 57.883 47.619 0.00 0.00 38.67 3.51
1278 1687 4.070716 CAATGCAAACTCTCTGGAAGACT 58.929 43.478 0.00 0.00 38.67 3.24
1279 1688 3.190118 CCAATGCAAACTCTCTGGAAGAC 59.810 47.826 0.00 0.00 38.67 3.01
1280 1689 3.181440 ACCAATGCAAACTCTCTGGAAGA 60.181 43.478 0.00 0.00 43.69 2.87
1281 1690 3.152341 ACCAATGCAAACTCTCTGGAAG 58.848 45.455 0.00 0.00 0.00 3.46
1328 1807 0.550914 AGTGGGAACTCTTGCAACCA 59.449 50.000 0.00 0.00 0.00 3.67
1329 1808 1.692411 AAGTGGGAACTCTTGCAACC 58.308 50.000 0.00 0.00 42.25 3.77
1342 1821 1.004044 ACTCTCCAATCTGCAAGTGGG 59.996 52.381 13.03 1.16 43.52 4.61
1343 1822 2.082231 CACTCTCCAATCTGCAAGTGG 58.918 52.381 8.48 8.48 44.74 4.00
1347 1826 5.592282 TGTTTTTACACTCTCCAATCTGCAA 59.408 36.000 0.00 0.00 0.00 4.08
1354 1836 5.009610 GGCAGATTGTTTTTACACTCTCCAA 59.990 40.000 0.00 0.00 28.93 3.53
1357 1839 5.689383 TGGCAGATTGTTTTTACACTCTC 57.311 39.130 0.00 0.00 28.93 3.20
1358 1840 5.536161 ACATGGCAGATTGTTTTTACACTCT 59.464 36.000 0.00 0.00 31.10 3.24
1359 1841 5.772521 ACATGGCAGATTGTTTTTACACTC 58.227 37.500 0.00 0.00 0.00 3.51
1360 1842 5.789643 ACATGGCAGATTGTTTTTACACT 57.210 34.783 0.00 0.00 0.00 3.55
1361 1843 6.144402 CAGAACATGGCAGATTGTTTTTACAC 59.856 38.462 6.43 0.00 36.25 2.90
1362 1844 6.040278 TCAGAACATGGCAGATTGTTTTTACA 59.960 34.615 6.43 0.00 36.25 2.41
1363 1845 6.446318 TCAGAACATGGCAGATTGTTTTTAC 58.554 36.000 6.43 0.00 36.25 2.01
1364 1846 6.647334 TCAGAACATGGCAGATTGTTTTTA 57.353 33.333 6.43 0.00 36.25 1.52
1365 1847 5.534207 TCAGAACATGGCAGATTGTTTTT 57.466 34.783 6.43 0.00 36.25 1.94
1533 2159 1.152756 AGCCTGGTTGGTGGTTGTC 60.153 57.895 0.00 0.00 38.35 3.18
1759 2443 7.550551 CCGAGTTGAATGGTATATCATTAGCAT 59.449 37.037 11.24 0.00 40.92 3.79
1769 2453 3.633525 ACTACGCCGAGTTGAATGGTATA 59.366 43.478 0.00 0.00 0.00 1.47
1785 2479 1.580704 CGTTCACCGATAACACTACGC 59.419 52.381 0.00 0.00 39.56 4.42
1786 2480 2.159531 TCCGTTCACCGATAACACTACG 60.160 50.000 0.00 0.00 39.56 3.51
1817 2511 4.684724 TGAGTTATCCCCTTCAGTACAGT 58.315 43.478 0.00 0.00 0.00 3.55
1822 2516 3.200825 CACCATGAGTTATCCCCTTCAGT 59.799 47.826 0.00 0.00 0.00 3.41
1825 2519 2.576615 GCACCATGAGTTATCCCCTTC 58.423 52.381 0.00 0.00 0.00 3.46
1867 2561 0.179124 GGAGCTCTTCGATGCGAACT 60.179 55.000 14.64 0.00 41.05 3.01
1957 2654 3.181452 GGTACGAGTCCCTACTGATCTCT 60.181 52.174 0.00 0.00 35.56 3.10
2020 2735 2.123338 TTGCTGGCCCTGTTGCTT 60.123 55.556 0.00 0.00 0.00 3.91
2057 2772 0.826715 CCTTCATCTTCCTCCTCGCA 59.173 55.000 0.00 0.00 0.00 5.10
2071 2786 1.006571 GTCGTTGTCCTCGCCTTCA 60.007 57.895 0.00 0.00 0.00 3.02
2096 2814 3.408020 CTTTTTCGACGCCGCCGA 61.408 61.111 0.00 0.00 38.29 5.54
2101 2819 2.474712 CTCGGCTTTTTCGACGCC 59.525 61.111 4.59 4.59 40.40 5.68
2110 2828 2.113139 CACACCACCCTCGGCTTT 59.887 61.111 0.00 0.00 0.00 3.51
2379 3114 0.451783 GGAAGTAAATGCCGTGCTGG 59.548 55.000 0.00 0.00 42.50 4.85
2415 3158 8.370940 TGGAAGAGATAACAATCCAATAGCTAG 58.629 37.037 0.00 0.00 37.24 3.42
2416 3159 8.262601 TGGAAGAGATAACAATCCAATAGCTA 57.737 34.615 0.00 0.00 37.24 3.32
2417 3160 7.141758 TGGAAGAGATAACAATCCAATAGCT 57.858 36.000 0.00 0.00 37.24 3.32
2418 3161 7.992754 ATGGAAGAGATAACAATCCAATAGC 57.007 36.000 0.00 0.00 42.97 2.97
2575 3361 5.810095 ACCAAATTAAGCTCTGCTCTACTT 58.190 37.500 0.00 0.00 38.25 2.24
2661 3651 9.326413 GGTAGCACAAATAACAGTTGTATCTAT 57.674 33.333 0.00 0.00 37.09 1.98
2662 3652 7.767198 GGGTAGCACAAATAACAGTTGTATCTA 59.233 37.037 0.00 0.00 37.09 1.98
2663 3653 6.598064 GGGTAGCACAAATAACAGTTGTATCT 59.402 38.462 0.00 0.00 37.09 1.98
2664 3654 6.598064 AGGGTAGCACAAATAACAGTTGTATC 59.402 38.462 0.00 0.00 37.09 2.24
2705 3695 3.569690 CAACGCGCGGGGTATTCC 61.570 66.667 35.22 0.00 0.00 3.01
2774 3978 4.512571 GCTACAGGAAAAACCGTAAAGACA 59.487 41.667 0.00 0.00 44.74 3.41
2775 3979 4.512571 TGCTACAGGAAAAACCGTAAAGAC 59.487 41.667 0.00 0.00 44.74 3.01
2778 3982 4.216687 CCATGCTACAGGAAAAACCGTAAA 59.783 41.667 0.00 0.00 44.74 2.01
2779 3983 3.754323 CCATGCTACAGGAAAAACCGTAA 59.246 43.478 0.00 0.00 44.74 3.18
2780 3984 3.244630 ACCATGCTACAGGAAAAACCGTA 60.245 43.478 0.00 0.00 44.74 4.02
2781 3985 2.159382 CCATGCTACAGGAAAAACCGT 58.841 47.619 0.00 0.00 44.74 4.83
2782 3986 2.159382 ACCATGCTACAGGAAAAACCG 58.841 47.619 0.00 0.00 44.74 4.44
2784 3988 8.088365 AGAAAATTACCATGCTACAGGAAAAAC 58.912 33.333 0.00 0.00 0.00 2.43
2785 3989 8.189119 AGAAAATTACCATGCTACAGGAAAAA 57.811 30.769 0.00 0.00 0.00 1.94
2786 3990 7.775053 AGAAAATTACCATGCTACAGGAAAA 57.225 32.000 0.00 0.00 0.00 2.29
2787 3991 7.775053 AAGAAAATTACCATGCTACAGGAAA 57.225 32.000 0.00 0.00 0.00 3.13
2788 3992 9.120538 GATAAGAAAATTACCATGCTACAGGAA 57.879 33.333 0.00 0.00 0.00 3.36
2790 3994 8.450578 TGATAAGAAAATTACCATGCTACAGG 57.549 34.615 0.00 0.00 0.00 4.00
2791 3995 9.722056 GTTGATAAGAAAATTACCATGCTACAG 57.278 33.333 0.00 0.00 0.00 2.74
2792 3996 9.237187 TGTTGATAAGAAAATTACCATGCTACA 57.763 29.630 0.00 0.00 0.00 2.74
2832 4036 8.904834 GGACTTACTCAGAGAGATACACATTTA 58.095 37.037 3.79 0.00 33.32 1.40
2833 4037 7.397476 TGGACTTACTCAGAGAGATACACATTT 59.603 37.037 3.79 0.00 33.32 2.32
2834 4038 6.892456 TGGACTTACTCAGAGAGATACACATT 59.108 38.462 3.79 0.00 33.32 2.71
2835 4039 6.427441 TGGACTTACTCAGAGAGATACACAT 58.573 40.000 3.79 0.00 33.32 3.21
2836 4040 5.816682 TGGACTTACTCAGAGAGATACACA 58.183 41.667 3.79 0.00 33.32 3.72
2837 4041 6.761099 TTGGACTTACTCAGAGAGATACAC 57.239 41.667 3.79 0.00 33.32 2.90
2838 4042 6.948886 AGTTTGGACTTACTCAGAGAGATACA 59.051 38.462 3.79 0.00 30.41 2.29
2839 4043 7.121463 TCAGTTTGGACTTACTCAGAGAGATAC 59.879 40.741 3.79 0.00 32.54 2.24
2840 4044 7.175797 TCAGTTTGGACTTACTCAGAGAGATA 58.824 38.462 3.79 0.00 32.54 1.98
2841 4045 6.013379 TCAGTTTGGACTTACTCAGAGAGAT 58.987 40.000 3.79 0.00 32.54 2.75
2842 4046 5.386060 TCAGTTTGGACTTACTCAGAGAGA 58.614 41.667 3.79 0.00 32.54 3.10
2843 4047 5.713792 TCAGTTTGGACTTACTCAGAGAG 57.286 43.478 3.79 0.00 32.54 3.20
2844 4048 5.509840 GCTTCAGTTTGGACTTACTCAGAGA 60.510 44.000 3.79 0.00 32.54 3.10
2845 4049 4.688413 GCTTCAGTTTGGACTTACTCAGAG 59.312 45.833 0.00 0.00 32.54 3.35
2846 4050 4.100963 TGCTTCAGTTTGGACTTACTCAGA 59.899 41.667 0.00 0.00 32.54 3.27
2847 4051 4.380531 TGCTTCAGTTTGGACTTACTCAG 58.619 43.478 0.00 0.00 32.54 3.35
2848 4052 4.415881 TGCTTCAGTTTGGACTTACTCA 57.584 40.909 0.00 0.00 32.54 3.41
2849 4053 5.751243 TTTGCTTCAGTTTGGACTTACTC 57.249 39.130 0.00 0.00 32.54 2.59
2850 4054 6.715347 ATTTTGCTTCAGTTTGGACTTACT 57.285 33.333 0.00 0.00 32.54 2.24
2851 4055 8.865590 TTTATTTTGCTTCAGTTTGGACTTAC 57.134 30.769 0.00 0.00 32.54 2.34
2852 4056 9.308318 GTTTTATTTTGCTTCAGTTTGGACTTA 57.692 29.630 0.00 0.00 32.54 2.24
2853 4057 7.821846 TGTTTTATTTTGCTTCAGTTTGGACTT 59.178 29.630 0.00 0.00 32.54 3.01
2854 4058 7.327214 TGTTTTATTTTGCTTCAGTTTGGACT 58.673 30.769 0.00 0.00 36.25 3.85
2855 4059 7.532682 TGTTTTATTTTGCTTCAGTTTGGAC 57.467 32.000 0.00 0.00 0.00 4.02
2856 4060 8.553459 TTTGTTTTATTTTGCTTCAGTTTGGA 57.447 26.923 0.00 0.00 0.00 3.53
2857 4061 9.786105 ATTTTGTTTTATTTTGCTTCAGTTTGG 57.214 25.926 0.00 0.00 0.00 3.28
2869 4073 9.705471 CGCATGCATCATATTTTGTTTTATTTT 57.295 25.926 19.57 0.00 0.00 1.82
2870 4074 9.096160 TCGCATGCATCATATTTTGTTTTATTT 57.904 25.926 19.57 0.00 0.00 1.40
2871 4075 8.645730 TCGCATGCATCATATTTTGTTTTATT 57.354 26.923 19.57 0.00 0.00 1.40
2872 4076 8.821147 ATCGCATGCATCATATTTTGTTTTAT 57.179 26.923 19.57 0.00 0.00 1.40
2873 4077 9.911138 ATATCGCATGCATCATATTTTGTTTTA 57.089 25.926 19.57 0.00 0.00 1.52
2874 4078 8.821147 ATATCGCATGCATCATATTTTGTTTT 57.179 26.923 19.57 0.00 0.00 2.43
2875 4079 8.821147 AATATCGCATGCATCATATTTTGTTT 57.179 26.923 19.57 0.00 0.00 2.83
2876 4080 8.821147 AAATATCGCATGCATCATATTTTGTT 57.179 26.923 22.11 9.80 30.55 2.83
2877 4081 8.821147 AAAATATCGCATGCATCATATTTTGT 57.179 26.923 29.42 18.41 38.83 2.83
2878 4082 9.135843 AGAAAATATCGCATGCATCATATTTTG 57.864 29.630 32.07 13.27 39.69 2.44
2879 4083 9.701098 AAGAAAATATCGCATGCATCATATTTT 57.299 25.926 29.88 29.88 41.15 1.82
2880 4084 9.701098 AAAGAAAATATCGCATGCATCATATTT 57.299 25.926 22.11 22.11 34.36 1.40
2881 4085 9.350357 GAAAGAAAATATCGCATGCATCATATT 57.650 29.630 19.57 17.20 0.00 1.28
2882 4086 8.517056 TGAAAGAAAATATCGCATGCATCATAT 58.483 29.630 19.57 12.47 0.00 1.78
2883 4087 7.873910 TGAAAGAAAATATCGCATGCATCATA 58.126 30.769 19.57 10.68 0.00 2.15
2884 4088 6.741109 TGAAAGAAAATATCGCATGCATCAT 58.259 32.000 19.57 8.69 0.00 2.45
2885 4089 6.134040 TGAAAGAAAATATCGCATGCATCA 57.866 33.333 19.57 0.28 0.00 3.07
2886 4090 6.089016 CCATGAAAGAAAATATCGCATGCATC 59.911 38.462 19.57 3.83 36.50 3.91
2887 4091 5.924254 CCATGAAAGAAAATATCGCATGCAT 59.076 36.000 19.57 12.61 36.50 3.96
2888 4092 5.067544 TCCATGAAAGAAAATATCGCATGCA 59.932 36.000 19.57 5.34 36.50 3.96
2889 4093 5.522456 TCCATGAAAGAAAATATCGCATGC 58.478 37.500 7.91 7.91 36.50 4.06
2890 4094 5.628193 GCTCCATGAAAGAAAATATCGCATG 59.372 40.000 0.00 0.00 37.04 4.06
2891 4095 5.300034 TGCTCCATGAAAGAAAATATCGCAT 59.700 36.000 0.00 0.00 0.00 4.73
2892 4096 4.639755 TGCTCCATGAAAGAAAATATCGCA 59.360 37.500 0.00 0.00 0.00 5.10
2893 4097 5.173774 TGCTCCATGAAAGAAAATATCGC 57.826 39.130 0.00 0.00 0.00 4.58
2894 4098 6.075918 CGATGCTCCATGAAAGAAAATATCG 58.924 40.000 0.00 0.00 0.00 2.92
2895 4099 6.205464 TCCGATGCTCCATGAAAGAAAATATC 59.795 38.462 0.00 0.00 0.00 1.63
2896 4100 6.064060 TCCGATGCTCCATGAAAGAAAATAT 58.936 36.000 0.00 0.00 0.00 1.28
2897 4101 5.436175 TCCGATGCTCCATGAAAGAAAATA 58.564 37.500 0.00 0.00 0.00 1.40
2898 4102 4.272489 TCCGATGCTCCATGAAAGAAAAT 58.728 39.130 0.00 0.00 0.00 1.82
2911 4115 1.354040 CAACTCACACTCCGATGCTC 58.646 55.000 0.00 0.00 0.00 4.26
2913 4117 0.950555 TGCAACTCACACTCCGATGC 60.951 55.000 0.00 0.00 0.00 3.91
2917 4121 1.229975 TGCATGCAACTCACACTCCG 61.230 55.000 20.30 0.00 0.00 4.63
2992 4362 1.137404 CCAAGCGCATGCAGTAACC 59.863 57.895 19.57 0.00 46.23 2.85
3025 4395 4.413520 ACAATAGCCATTGGATCTACAGGT 59.586 41.667 6.95 0.00 44.97 4.00
3073 4453 6.197096 GCGCCACATCACTCAAATTAATTTAG 59.803 38.462 12.98 12.50 0.00 1.85
3087 4467 0.955428 TTCTCCTTGCGCCACATCAC 60.955 55.000 4.18 0.00 0.00 3.06
3118 4498 5.763876 AATAGCTAGCCCCCACTATAAAG 57.236 43.478 12.13 0.00 0.00 1.85
3122 4502 4.104831 CCTAAATAGCTAGCCCCCACTAT 58.895 47.826 12.13 0.00 0.00 2.12
3264 5005 9.941325 CTGCTATTCACATTAGATATCTCCTTT 57.059 33.333 8.95 0.00 0.00 3.11
3289 5030 4.263683 GGGGAGGAATAATATGAGCAAGCT 60.264 45.833 0.00 0.00 0.00 3.74
3642 5543 3.879892 GAGGGAAAAGATAGCGATGCTTT 59.120 43.478 0.00 0.00 40.44 3.51
3697 5598 3.620419 ATGGCGGTGGCAACGATGA 62.620 57.895 31.68 11.55 42.43 2.92
3718 5619 1.494721 AGGGAGAAAACTCCAGCAACA 59.505 47.619 16.44 0.00 45.06 3.33
3772 5673 0.033781 ACCATGCACAAACATGCCAC 59.966 50.000 0.00 0.00 44.98 5.01
3804 5734 4.354162 TGCATCCAGGCAGCTGCA 62.354 61.111 37.63 19.79 44.36 4.41
3827 5757 5.115480 TGTATCATGCATAAGAACGCAGAA 58.885 37.500 0.00 0.00 42.37 3.02
4123 6062 6.312672 ACAAAACTGAAACAATGTAGCCAAAC 59.687 34.615 0.00 0.00 0.00 2.93
4227 6177 3.230134 TGAACAATTTTACAGCTGGCCT 58.770 40.909 19.93 0.00 0.00 5.19
4669 8289 0.319297 CCTCCAAAAGCAGCAGCAAC 60.319 55.000 3.17 0.00 45.49 4.17
4751 8371 2.124778 GAGGAGCAGCAGAAGGGC 60.125 66.667 0.00 0.00 0.00 5.19
4810 8430 1.963515 GTCCTGAAGCCCAAATGTTGT 59.036 47.619 0.00 0.00 0.00 3.32
4889 8548 3.226347 GTCAAGTCTGCGTGTTTATTGC 58.774 45.455 0.00 0.00 0.00 3.56
4894 8553 1.087202 TGCGTCAAGTCTGCGTGTTT 61.087 50.000 0.00 0.00 0.00 2.83
4905 8564 1.576421 GGTCAAGCCTTGCGTCAAG 59.424 57.895 0.00 11.23 40.75 3.02
4908 8567 4.090057 GCGGTCAAGCCTTGCGTC 62.090 66.667 0.00 0.00 34.25 5.19
5004 8663 1.127567 TAGTGTTGGCCAGAGCACCT 61.128 55.000 24.25 17.09 42.56 4.00
5027 8686 4.009675 TGTAATTCTCTGGAATGTGCCAC 58.990 43.478 0.00 0.00 40.86 5.01
5119 8778 7.029563 CCTGAACTTGCATTTTGTATTCCTAC 58.970 38.462 0.00 0.00 0.00 3.18
5179 8907 3.751175 TCGACAGAAAATCCATCACCAAC 59.249 43.478 0.00 0.00 0.00 3.77
5236 8964 1.709147 GCATCCAGCTTTGTCGCGAT 61.709 55.000 14.06 0.00 41.15 4.58
5266 8994 2.040412 GGTCCATCCCTTGTTCTTCAGT 59.960 50.000 0.00 0.00 0.00 3.41
5352 9083 2.187685 CCACATCTGCCGCTGCTA 59.812 61.111 0.70 0.00 38.71 3.49
5358 9089 0.176680 AACTAGCTCCACATCTGCCG 59.823 55.000 0.00 0.00 0.00 5.69
5393 9124 1.417288 ATCATGAGGAGGGAGCAGCC 61.417 60.000 0.09 0.00 0.00 4.85
5408 9139 4.649088 TTCGAATGTCTGTCGGTATCAT 57.351 40.909 0.00 0.00 39.01 2.45
5511 9245 4.188462 CACCACCATCGTAGCTAAAATCA 58.812 43.478 0.00 0.00 0.00 2.57
5666 9413 8.986477 AAAAAGCGATAAAAGTTCAAGCATAT 57.014 26.923 0.00 0.00 0.00 1.78
5674 9421 4.473199 AGCGGAAAAAGCGATAAAAGTTC 58.527 39.130 0.00 0.00 40.04 3.01
5748 9498 3.773667 ACTAGGTTACTGGGCTTAGTTCC 59.226 47.826 0.00 4.88 32.19 3.62
5838 9593 3.553096 GGGGAGTATCGTCATGACATGTC 60.553 52.174 24.93 19.27 34.37 3.06
5868 9623 2.529744 GCCCAGGTCTGTGGAGGTT 61.530 63.158 8.87 0.00 40.44 3.50
5874 9633 2.674380 GGCTTGCCCAGGTCTGTG 60.674 66.667 0.00 0.00 0.00 3.66
5875 9634 3.177884 TGGCTTGCCCAGGTCTGT 61.178 61.111 9.35 0.00 39.18 3.41
5883 9642 1.600916 GGTCGGATATGGCTTGCCC 60.601 63.158 9.35 0.00 0.00 5.36
5884 9643 0.886490 CAGGTCGGATATGGCTTGCC 60.886 60.000 4.43 4.43 0.00 4.52
5891 9683 1.688735 TCTCTTGGCAGGTCGGATATG 59.311 52.381 0.00 0.00 0.00 1.78
5905 9697 0.671251 CCGTAGGCTAGGCTCTCTTG 59.329 60.000 23.89 8.91 46.14 3.02
6004 9801 2.668212 CTTCCGCGGGCTTTCACA 60.668 61.111 27.83 0.00 0.00 3.58
6096 9894 1.305046 ATCTCGGTCCGGTCTGGTT 60.305 57.895 12.29 0.00 39.52 3.67
6100 9898 0.106669 TCATGATCTCGGTCCGGTCT 60.107 55.000 12.29 0.00 0.00 3.85
6120 9919 2.836981 CCAGTCTCTGAAATCAGGACCT 59.163 50.000 19.51 0.00 43.91 3.85
6272 10107 0.111045 TAACAAACGCGCACACATCG 60.111 50.000 5.73 0.00 0.00 3.84
6273 10108 2.166007 GATAACAAACGCGCACACATC 58.834 47.619 5.73 0.00 0.00 3.06
6274 10109 1.135803 GGATAACAAACGCGCACACAT 60.136 47.619 5.73 0.00 0.00 3.21
6275 10110 0.236187 GGATAACAAACGCGCACACA 59.764 50.000 5.73 0.00 0.00 3.72
6277 10116 1.135831 CATGGATAACAAACGCGCACA 60.136 47.619 5.73 0.00 0.00 4.57
6279 10118 1.443802 TCATGGATAACAAACGCGCA 58.556 45.000 5.73 0.00 0.00 6.09
6286 10125 3.216800 GCAGGCTCATCATGGATAACAA 58.783 45.455 0.00 0.00 0.00 2.83
6299 10188 2.785540 TGAACATATGTGCAGGCTCA 57.214 45.000 12.84 6.98 0.00 4.26
6300 10189 4.320057 GCTAATGAACATATGTGCAGGCTC 60.320 45.833 21.10 9.05 36.94 4.70
6301 10190 3.567164 GCTAATGAACATATGTGCAGGCT 59.433 43.478 21.10 10.98 36.94 4.58
6302 10191 3.316029 TGCTAATGAACATATGTGCAGGC 59.684 43.478 21.10 21.74 36.94 4.85
6303 10192 5.104562 CTGCTAATGAACATATGTGCAGG 57.895 43.478 25.09 17.35 41.76 4.85
6305 10194 6.513806 AAACTGCTAATGAACATATGTGCA 57.486 33.333 19.01 19.01 38.11 4.57
6306 10195 7.253420 CGAAAAACTGCTAATGAACATATGTGC 60.253 37.037 9.63 8.21 0.00 4.57
6309 10198 9.935682 ATACGAAAAACTGCTAATGAACATATG 57.064 29.630 0.00 0.00 0.00 1.78
6312 10201 7.273381 GCAATACGAAAAACTGCTAATGAACAT 59.727 33.333 0.00 0.00 0.00 2.71
6332 10222 6.138761 GCTCTACATTACTTGCATGCAATAC 58.861 40.000 31.96 6.68 35.20 1.89
6396 10286 3.481453 GCCAGGTTTGATCCTCTAATCC 58.519 50.000 0.00 0.00 35.37 3.01
6468 10358 4.726825 AGCAGGAAACCAAATATAGGAGGA 59.273 41.667 1.37 0.00 0.00 3.71
6477 10367 2.154462 CAGTCGAGCAGGAAACCAAAT 58.846 47.619 0.00 0.00 0.00 2.32
6506 10398 0.681564 TCACCCCACGTTGCAGTTTT 60.682 50.000 0.00 0.00 0.00 2.43
6547 10439 5.952947 ACAAGGAGTAGATATAATAGCGCCT 59.047 40.000 2.29 0.00 0.00 5.52
6604 10497 0.527817 GCGTGGGACTCCGACATTAG 60.528 60.000 10.54 0.00 35.24 1.73
6606 10499 2.264794 GCGTGGGACTCCGACATT 59.735 61.111 10.54 0.00 35.24 2.71
6618 10511 0.953471 TTCCAGACAATTCCGCGTGG 60.953 55.000 9.28 9.28 0.00 4.94
6620 10513 0.872388 GTTTCCAGACAATTCCGCGT 59.128 50.000 4.92 0.00 0.00 6.01
6642 10535 4.117661 GACGAGCTTCGGACCGCT 62.118 66.667 9.66 0.00 45.59 5.52
6648 10541 1.226435 CGAAGGAGACGAGCTTCGG 60.226 63.158 0.00 0.00 45.59 4.30
6650 10543 0.521659 CGACGAAGGAGACGAGCTTC 60.522 60.000 0.00 0.00 34.70 3.86
6652 10545 2.400158 CCGACGAAGGAGACGAGCT 61.400 63.158 0.00 0.00 34.70 4.09
6654 10547 1.020333 AGTCCGACGAAGGAGACGAG 61.020 60.000 0.00 0.00 41.68 4.18
6656 10549 1.134901 CAGTCCGACGAAGGAGACG 59.865 63.158 0.00 0.00 41.68 4.18
6664 10557 2.483745 GCGACATCAGTCCGACGA 59.516 61.111 0.00 0.00 41.87 4.20
6733 10626 4.595538 TTCGGTGCTGGCGTTCGT 62.596 61.111 0.00 0.00 0.00 3.85
6760 10653 1.528129 GGGCAGAGAAAAGTGTGGAG 58.472 55.000 0.00 0.00 0.00 3.86
6767 10660 1.347320 GACGTACGGGCAGAGAAAAG 58.653 55.000 21.06 0.00 0.00 2.27
6796 10689 1.376037 CGGACAGGGAGTGGAAAGC 60.376 63.158 0.00 0.00 0.00 3.51
6811 10704 2.426651 GCCTACTAGTGATGGCGGA 58.573 57.895 16.70 0.00 35.79 5.54
6818 10711 1.054406 GGGGGCATGCCTACTAGTGA 61.054 60.000 34.70 0.00 36.10 3.41
6840 10733 2.113807 GGTAGTCCCTTATCCAACGGT 58.886 52.381 0.00 0.00 0.00 4.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.