Multiple sequence alignment - TraesCS7A01G146300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G146300 chr7A 100.000 2657 0 0 1 2657 97911663 97909007 0.000000e+00 4907
1 TraesCS7A01G146300 chr7D 96.974 1388 39 3 587 1973 94509606 94508221 0.000000e+00 2327
2 TraesCS7A01G146300 chr7D 88.390 267 14 4 35 300 94509853 94509603 3.320000e-79 305
3 TraesCS7A01G146300 chr7B 91.661 1391 104 7 587 1973 48772499 48771117 0.000000e+00 1916
4 TraesCS7A01G146300 chr7B 89.691 194 19 1 299 491 28938363 28938556 2.040000e-61 246
5 TraesCS7A01G146300 chr7B 87.000 100 11 2 492 589 743919160 743919259 7.770000e-21 111
6 TraesCS7A01G146300 chr7B 87.000 100 11 2 492 589 743964436 743964535 7.770000e-21 111
7 TraesCS7A01G146300 chr2A 94.576 590 30 2 2070 2657 393279047 393279636 0.000000e+00 911
8 TraesCS7A01G146300 chr2A 94.237 590 32 2 2070 2657 738517742 738518331 0.000000e+00 900
9 TraesCS7A01G146300 chr2A 94.068 590 32 3 2070 2657 745355941 745355353 0.000000e+00 893
10 TraesCS7A01G146300 chr2A 89.055 201 20 2 293 491 89589293 89589493 5.680000e-62 248
11 TraesCS7A01G146300 chr5A 94.295 596 31 3 2065 2657 352378589 352379184 0.000000e+00 909
12 TraesCS7A01G146300 chr5A 93.898 590 34 2 2070 2657 169689682 169689093 0.000000e+00 889
13 TraesCS7A01G146300 chr5A 89.286 196 20 1 297 491 601016550 601016745 7.350000e-61 244
14 TraesCS7A01G146300 chr5A 86.139 101 12 2 492 590 10854522 10854422 1.010000e-19 108
15 TraesCS7A01G146300 chr4A 94.286 595 32 2 2065 2657 560109533 560110127 0.000000e+00 909
16 TraesCS7A01G146300 chr4A 94.068 590 32 3 2070 2657 560118773 560119361 0.000000e+00 893
17 TraesCS7A01G146300 chr4A 88.889 198 21 1 295 491 149395673 149395870 2.640000e-60 243
18 TraesCS7A01G146300 chr4A 88.776 98 9 2 492 587 683610141 683610238 4.650000e-23 119
19 TraesCS7A01G146300 chr3A 94.068 590 33 2 2070 2657 377557364 377557953 0.000000e+00 894
20 TraesCS7A01G146300 chr3A 94.068 590 33 2 2070 2657 425312050 425312639 0.000000e+00 894
21 TraesCS7A01G146300 chr1A 83.333 300 43 6 297 590 27278919 27279217 1.210000e-68 270
22 TraesCS7A01G146300 chr2D 90.909 198 15 3 296 491 69540904 69541100 2.030000e-66 263
23 TraesCS7A01G146300 chr6A 89.691 194 18 2 299 491 235028083 235028275 2.040000e-61 246
24 TraesCS7A01G146300 chr6A 89.286 196 20 1 297 491 29894437 29894242 7.350000e-61 244
25 TraesCS7A01G146300 chr6A 89.286 196 20 1 297 491 610627005 610627200 7.350000e-61 244
26 TraesCS7A01G146300 chr6D 90.196 102 8 2 492 591 37338082 37338183 5.970000e-27 132
27 TraesCS7A01G146300 chr4D 89.000 100 9 2 492 589 391466697 391466598 3.590000e-24 122
28 TraesCS7A01G146300 chr1D 88.000 100 10 2 492 589 26369993 26370092 1.670000e-22 117
29 TraesCS7A01G146300 chr4B 87.129 101 11 2 492 590 98740680 98740780 2.160000e-21 113


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G146300 chr7A 97909007 97911663 2656 True 4907 4907 100.000 1 2657 1 chr7A.!!$R1 2656
1 TraesCS7A01G146300 chr7D 94508221 94509853 1632 True 1316 2327 92.682 35 1973 2 chr7D.!!$R1 1938
2 TraesCS7A01G146300 chr7B 48771117 48772499 1382 True 1916 1916 91.661 587 1973 1 chr7B.!!$R1 1386
3 TraesCS7A01G146300 chr2A 393279047 393279636 589 False 911 911 94.576 2070 2657 1 chr2A.!!$F2 587
4 TraesCS7A01G146300 chr2A 738517742 738518331 589 False 900 900 94.237 2070 2657 1 chr2A.!!$F3 587
5 TraesCS7A01G146300 chr2A 745355353 745355941 588 True 893 893 94.068 2070 2657 1 chr2A.!!$R1 587
6 TraesCS7A01G146300 chr5A 352378589 352379184 595 False 909 909 94.295 2065 2657 1 chr5A.!!$F1 592
7 TraesCS7A01G146300 chr5A 169689093 169689682 589 True 889 889 93.898 2070 2657 1 chr5A.!!$R2 587
8 TraesCS7A01G146300 chr4A 560109533 560110127 594 False 909 909 94.286 2065 2657 1 chr4A.!!$F2 592
9 TraesCS7A01G146300 chr4A 560118773 560119361 588 False 893 893 94.068 2070 2657 1 chr4A.!!$F3 587
10 TraesCS7A01G146300 chr3A 377557364 377557953 589 False 894 894 94.068 2070 2657 1 chr3A.!!$F1 587
11 TraesCS7A01G146300 chr3A 425312050 425312639 589 False 894 894 94.068 2070 2657 1 chr3A.!!$F2 587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
334 336 0.117340 AGGTGCTTAGGAGAGGTGGT 59.883 55.0 0.0 0.0 0.00 4.16 F
504 506 0.324943 ACAAGGTAAGCGTCTGCCAT 59.675 50.0 0.0 0.0 44.31 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1364 1371 0.179062 ATCGCTGCCATGGAGAAGAC 60.179 55.0 18.40 0.00 0.00 3.01 R
2482 2492 0.192064 TTTGGGCCAAAATGGAGGGA 59.808 50.0 28.69 3.04 40.96 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 2.554370 TTTCCCACGTACCAAAGAGG 57.446 50.000 0.00 0.00 45.67 3.69
93 94 1.134491 CGTACCAAAGAGGCCCTTAGG 60.134 57.143 0.00 0.00 43.14 2.69
124 126 6.942576 CGACATCCAATTCCTATATTTTCCCT 59.057 38.462 0.00 0.00 0.00 4.20
164 166 5.903198 TTTTTGAGGAACCCATTGGAATT 57.097 34.783 3.62 0.00 34.81 2.17
165 167 5.903198 TTTTGAGGAACCCATTGGAATTT 57.097 34.783 3.62 0.00 34.81 1.82
166 168 5.482163 TTTGAGGAACCCATTGGAATTTC 57.518 39.130 3.62 3.91 34.81 2.17
167 169 3.088532 TGAGGAACCCATTGGAATTTCG 58.911 45.455 3.62 0.00 34.81 3.46
168 170 1.824852 AGGAACCCATTGGAATTTCGC 59.175 47.619 3.62 0.00 34.81 4.70
169 171 1.469079 GGAACCCATTGGAATTTCGCG 60.469 52.381 3.62 0.00 34.81 5.87
219 221 8.018520 CACTAACACTTCGCCAAATACAATTAA 58.981 33.333 0.00 0.00 0.00 1.40
276 278 3.505680 CCAACACTTTTGCATGTAGCCTA 59.494 43.478 0.00 0.00 44.83 3.93
278 280 2.742053 ACACTTTTGCATGTAGCCTACG 59.258 45.455 0.00 0.00 44.83 3.51
303 305 2.338577 GTGCAGATCACATAAGGCCT 57.661 50.000 0.00 0.00 44.98 5.19
304 306 2.648059 GTGCAGATCACATAAGGCCTT 58.352 47.619 24.18 24.18 44.98 4.35
305 307 3.808728 GTGCAGATCACATAAGGCCTTA 58.191 45.455 27.11 27.11 44.98 2.69
306 308 4.392940 GTGCAGATCACATAAGGCCTTAT 58.607 43.478 29.02 29.02 44.98 1.73
307 309 5.551233 GTGCAGATCACATAAGGCCTTATA 58.449 41.667 32.70 20.69 44.98 0.98
308 310 5.409826 GTGCAGATCACATAAGGCCTTATAC 59.590 44.000 32.70 21.29 44.98 1.47
309 311 5.071653 TGCAGATCACATAAGGCCTTATACA 59.928 40.000 32.70 21.00 34.27 2.29
310 312 5.997746 GCAGATCACATAAGGCCTTATACAA 59.002 40.000 32.70 21.73 34.27 2.41
311 313 6.656693 GCAGATCACATAAGGCCTTATACAAT 59.343 38.462 32.70 24.67 34.27 2.71
312 314 7.361542 GCAGATCACATAAGGCCTTATACAATG 60.362 40.741 32.70 25.65 34.27 2.82
313 315 6.656693 AGATCACATAAGGCCTTATACAATGC 59.343 38.462 32.70 20.97 34.27 3.56
314 316 5.689835 TCACATAAGGCCTTATACAATGCA 58.310 37.500 32.70 13.74 34.27 3.96
315 317 6.125719 TCACATAAGGCCTTATACAATGCAA 58.874 36.000 32.70 14.65 34.27 4.08
316 318 6.262944 TCACATAAGGCCTTATACAATGCAAG 59.737 38.462 32.70 20.72 34.27 4.01
317 319 5.536161 ACATAAGGCCTTATACAATGCAAGG 59.464 40.000 32.70 20.10 41.53 3.61
318 320 3.669939 AGGCCTTATACAATGCAAGGT 57.330 42.857 0.00 0.00 40.84 3.50
319 321 3.290710 AGGCCTTATACAATGCAAGGTG 58.709 45.455 0.00 0.00 40.84 4.00
320 322 2.223805 GGCCTTATACAATGCAAGGTGC 60.224 50.000 0.00 0.00 45.29 5.01
321 323 2.689983 GCCTTATACAATGCAAGGTGCT 59.310 45.455 9.61 0.00 45.31 4.40
322 324 3.131046 GCCTTATACAATGCAAGGTGCTT 59.869 43.478 9.61 0.00 45.31 3.91
323 325 4.338118 GCCTTATACAATGCAAGGTGCTTA 59.662 41.667 9.61 0.00 45.31 3.09
324 326 5.506317 GCCTTATACAATGCAAGGTGCTTAG 60.506 44.000 9.61 0.00 45.31 2.18
325 327 5.009010 CCTTATACAATGCAAGGTGCTTAGG 59.991 44.000 0.00 0.00 45.31 2.69
326 328 2.584835 ACAATGCAAGGTGCTTAGGA 57.415 45.000 0.00 0.00 45.31 2.94
327 329 2.440409 ACAATGCAAGGTGCTTAGGAG 58.560 47.619 0.00 0.00 45.31 3.69
328 330 2.040278 ACAATGCAAGGTGCTTAGGAGA 59.960 45.455 0.00 0.00 45.31 3.71
329 331 2.681848 CAATGCAAGGTGCTTAGGAGAG 59.318 50.000 0.00 0.00 45.31 3.20
330 332 0.615331 TGCAAGGTGCTTAGGAGAGG 59.385 55.000 1.43 0.00 45.31 3.69
331 333 0.615850 GCAAGGTGCTTAGGAGAGGT 59.384 55.000 0.00 0.00 40.96 3.85
332 334 1.677217 GCAAGGTGCTTAGGAGAGGTG 60.677 57.143 0.00 0.00 40.96 4.00
333 335 1.065854 CAAGGTGCTTAGGAGAGGTGG 60.066 57.143 0.00 0.00 0.00 4.61
334 336 0.117340 AGGTGCTTAGGAGAGGTGGT 59.883 55.000 0.00 0.00 0.00 4.16
335 337 0.984995 GGTGCTTAGGAGAGGTGGTT 59.015 55.000 0.00 0.00 0.00 3.67
336 338 1.339151 GGTGCTTAGGAGAGGTGGTTG 60.339 57.143 0.00 0.00 0.00 3.77
337 339 0.984230 TGCTTAGGAGAGGTGGTTGG 59.016 55.000 0.00 0.00 0.00 3.77
338 340 1.276622 GCTTAGGAGAGGTGGTTGGA 58.723 55.000 0.00 0.00 0.00 3.53
339 341 1.208293 GCTTAGGAGAGGTGGTTGGAG 59.792 57.143 0.00 0.00 0.00 3.86
340 342 2.821437 CTTAGGAGAGGTGGTTGGAGA 58.179 52.381 0.00 0.00 0.00 3.71
341 343 3.173965 CTTAGGAGAGGTGGTTGGAGAA 58.826 50.000 0.00 0.00 0.00 2.87
342 344 2.118403 AGGAGAGGTGGTTGGAGAAA 57.882 50.000 0.00 0.00 0.00 2.52
343 345 2.637165 AGGAGAGGTGGTTGGAGAAAT 58.363 47.619 0.00 0.00 0.00 2.17
344 346 3.803340 AGGAGAGGTGGTTGGAGAAATA 58.197 45.455 0.00 0.00 0.00 1.40
345 347 4.175962 AGGAGAGGTGGTTGGAGAAATAA 58.824 43.478 0.00 0.00 0.00 1.40
346 348 4.601857 AGGAGAGGTGGTTGGAGAAATAAA 59.398 41.667 0.00 0.00 0.00 1.40
347 349 5.254032 AGGAGAGGTGGTTGGAGAAATAAAT 59.746 40.000 0.00 0.00 0.00 1.40
348 350 5.590663 GGAGAGGTGGTTGGAGAAATAAATC 59.409 44.000 0.00 0.00 0.00 2.17
349 351 6.139679 AGAGGTGGTTGGAGAAATAAATCA 57.860 37.500 0.00 0.00 0.00 2.57
350 352 6.183347 AGAGGTGGTTGGAGAAATAAATCAG 58.817 40.000 0.00 0.00 0.00 2.90
351 353 5.264395 AGGTGGTTGGAGAAATAAATCAGG 58.736 41.667 0.00 0.00 0.00 3.86
352 354 4.142160 GGTGGTTGGAGAAATAAATCAGGC 60.142 45.833 0.00 0.00 0.00 4.85
353 355 4.706962 GTGGTTGGAGAAATAAATCAGGCT 59.293 41.667 0.00 0.00 0.00 4.58
354 356 5.185828 GTGGTTGGAGAAATAAATCAGGCTT 59.814 40.000 0.00 0.00 0.00 4.35
355 357 5.779771 TGGTTGGAGAAATAAATCAGGCTTT 59.220 36.000 0.00 0.00 0.00 3.51
356 358 6.269769 TGGTTGGAGAAATAAATCAGGCTTTT 59.730 34.615 0.00 0.00 0.00 2.27
357 359 6.813649 GGTTGGAGAAATAAATCAGGCTTTTC 59.186 38.462 0.00 0.00 0.00 2.29
358 360 7.310052 GGTTGGAGAAATAAATCAGGCTTTTCT 60.310 37.037 8.86 8.86 38.86 2.52
359 361 7.781324 TGGAGAAATAAATCAGGCTTTTCTT 57.219 32.000 10.11 0.00 36.91 2.52
360 362 8.877864 TGGAGAAATAAATCAGGCTTTTCTTA 57.122 30.769 10.11 2.49 36.91 2.10
361 363 9.308000 TGGAGAAATAAATCAGGCTTTTCTTAA 57.692 29.630 10.11 1.57 36.91 1.85
362 364 9.794685 GGAGAAATAAATCAGGCTTTTCTTAAG 57.205 33.333 10.11 0.00 36.91 1.85
363 365 9.295214 GAGAAATAAATCAGGCTTTTCTTAAGC 57.705 33.333 10.11 0.98 36.91 3.09
364 366 8.806146 AGAAATAAATCAGGCTTTTCTTAAGCA 58.194 29.630 11.18 0.00 44.71 3.91
365 367 8.763049 AAATAAATCAGGCTTTTCTTAAGCAC 57.237 30.769 11.18 1.86 44.71 4.40
366 368 4.790765 AATCAGGCTTTTCTTAAGCACC 57.209 40.909 11.18 0.00 44.71 5.01
367 369 3.222173 TCAGGCTTTTCTTAAGCACCA 57.778 42.857 11.18 0.00 44.71 4.17
368 370 3.149196 TCAGGCTTTTCTTAAGCACCAG 58.851 45.455 11.18 0.00 44.71 4.00
369 371 2.887152 CAGGCTTTTCTTAAGCACCAGT 59.113 45.455 11.18 0.00 44.71 4.00
370 372 2.887152 AGGCTTTTCTTAAGCACCAGTG 59.113 45.455 11.18 0.00 44.71 3.66
384 386 3.009723 CACCAGTGCCTATTTGTACAGG 58.990 50.000 0.00 0.00 34.85 4.00
391 393 1.933853 CCTATTTGTACAGGCAGACGC 59.066 52.381 0.00 0.00 37.44 5.19
392 394 2.418746 CCTATTTGTACAGGCAGACGCT 60.419 50.000 0.00 0.00 38.60 5.07
393 395 2.185004 ATTTGTACAGGCAGACGCTT 57.815 45.000 0.00 0.00 38.60 4.68
394 396 2.823924 TTTGTACAGGCAGACGCTTA 57.176 45.000 0.00 0.00 38.60 3.09
395 397 2.823924 TTGTACAGGCAGACGCTTAA 57.176 45.000 0.00 0.00 38.60 1.85
396 398 3.328382 TTGTACAGGCAGACGCTTAAT 57.672 42.857 0.00 0.00 38.60 1.40
397 399 3.328382 TGTACAGGCAGACGCTTAATT 57.672 42.857 0.00 0.00 38.60 1.40
398 400 4.459390 TGTACAGGCAGACGCTTAATTA 57.541 40.909 0.00 0.00 38.60 1.40
399 401 4.430007 TGTACAGGCAGACGCTTAATTAG 58.570 43.478 0.00 0.00 38.60 1.73
400 402 2.906354 ACAGGCAGACGCTTAATTAGG 58.094 47.619 0.00 0.00 38.60 2.69
401 403 2.236395 ACAGGCAGACGCTTAATTAGGT 59.764 45.455 0.00 0.00 38.60 3.08
402 404 2.609459 CAGGCAGACGCTTAATTAGGTG 59.391 50.000 6.60 6.60 38.60 4.00
403 405 2.236395 AGGCAGACGCTTAATTAGGTGT 59.764 45.455 13.03 13.03 38.60 4.16
404 406 2.608090 GGCAGACGCTTAATTAGGTGTC 59.392 50.000 25.65 25.65 41.40 3.67
406 408 3.552294 GCAGACGCTTAATTAGGTGTCTC 59.448 47.826 30.26 22.82 46.01 3.36
407 409 4.678309 GCAGACGCTTAATTAGGTGTCTCT 60.678 45.833 30.26 15.72 46.01 3.10
408 410 5.038033 CAGACGCTTAATTAGGTGTCTCTC 58.962 45.833 30.26 13.02 46.01 3.20
409 411 4.951094 AGACGCTTAATTAGGTGTCTCTCT 59.049 41.667 28.46 13.85 46.01 3.10
410 412 5.419471 AGACGCTTAATTAGGTGTCTCTCTT 59.581 40.000 28.46 13.55 46.01 2.85
411 413 5.411781 ACGCTTAATTAGGTGTCTCTCTTG 58.588 41.667 7.89 0.00 0.00 3.02
412 414 5.047235 ACGCTTAATTAGGTGTCTCTCTTGT 60.047 40.000 7.89 0.00 0.00 3.16
413 415 6.152323 ACGCTTAATTAGGTGTCTCTCTTGTA 59.848 38.462 7.89 0.00 0.00 2.41
414 416 6.693545 CGCTTAATTAGGTGTCTCTCTTGTAG 59.306 42.308 0.19 0.00 0.00 2.74
415 417 7.415318 CGCTTAATTAGGTGTCTCTCTTGTAGA 60.415 40.741 0.19 0.00 0.00 2.59
416 418 8.251721 GCTTAATTAGGTGTCTCTCTTGTAGAA 58.748 37.037 0.00 0.00 32.46 2.10
421 423 6.783708 AGGTGTCTCTCTTGTAGAAATAGG 57.216 41.667 0.00 0.00 32.46 2.57
422 424 5.128008 AGGTGTCTCTCTTGTAGAAATAGGC 59.872 44.000 0.00 0.00 32.46 3.93
423 425 5.105310 GGTGTCTCTCTTGTAGAAATAGGCA 60.105 44.000 0.00 0.00 32.46 4.75
424 426 5.808030 GTGTCTCTCTTGTAGAAATAGGCAC 59.192 44.000 0.00 0.00 31.57 5.01
425 427 5.105310 TGTCTCTCTTGTAGAAATAGGCACC 60.105 44.000 0.00 0.00 32.46 5.01
426 428 4.098044 TCTCTCTTGTAGAAATAGGCACCG 59.902 45.833 0.00 0.00 32.46 4.94
427 429 3.132289 TCTCTTGTAGAAATAGGCACCGG 59.868 47.826 0.00 0.00 0.00 5.28
428 430 2.835764 TCTTGTAGAAATAGGCACCGGT 59.164 45.455 0.00 0.00 0.00 5.28
429 431 2.684001 TGTAGAAATAGGCACCGGTG 57.316 50.000 30.66 30.66 0.00 4.94
440 442 3.305709 CACCGGTGCTTCAGAAGAA 57.694 52.632 24.02 0.00 0.00 2.52
455 457 8.512800 CTTCAGAAGAAGCCTGTTTATTTTTC 57.487 34.615 3.82 0.00 44.25 2.29
456 458 7.823745 TCAGAAGAAGCCTGTTTATTTTTCT 57.176 32.000 0.00 0.00 33.57 2.52
457 459 8.918202 TCAGAAGAAGCCTGTTTATTTTTCTA 57.082 30.769 0.00 0.00 33.57 2.10
458 460 9.349713 TCAGAAGAAGCCTGTTTATTTTTCTAA 57.650 29.630 0.00 0.00 33.57 2.10
459 461 9.617975 CAGAAGAAGCCTGTTTATTTTTCTAAG 57.382 33.333 0.00 0.00 0.00 2.18
460 462 8.300286 AGAAGAAGCCTGTTTATTTTTCTAAGC 58.700 33.333 0.00 0.00 0.00 3.09
461 463 7.524717 AGAAGCCTGTTTATTTTTCTAAGCA 57.475 32.000 0.00 0.00 0.00 3.91
462 464 7.371159 AGAAGCCTGTTTATTTTTCTAAGCAC 58.629 34.615 0.00 0.00 0.00 4.40
463 465 6.025749 AGCCTGTTTATTTTTCTAAGCACC 57.974 37.500 0.00 0.00 0.00 5.01
464 466 5.775195 AGCCTGTTTATTTTTCTAAGCACCT 59.225 36.000 0.00 0.00 0.00 4.00
465 467 6.267699 AGCCTGTTTATTTTTCTAAGCACCTT 59.732 34.615 0.00 0.00 0.00 3.50
466 468 6.586463 GCCTGTTTATTTTTCTAAGCACCTTC 59.414 38.462 0.00 0.00 0.00 3.46
467 469 7.090808 CCTGTTTATTTTTCTAAGCACCTTCC 58.909 38.462 0.00 0.00 0.00 3.46
468 470 7.039714 CCTGTTTATTTTTCTAAGCACCTTCCT 60.040 37.037 0.00 0.00 0.00 3.36
469 471 8.927675 TGTTTATTTTTCTAAGCACCTTCCTA 57.072 30.769 0.00 0.00 0.00 2.94
470 472 9.357161 TGTTTATTTTTCTAAGCACCTTCCTAA 57.643 29.630 0.00 0.00 0.00 2.69
471 473 9.841880 GTTTATTTTTCTAAGCACCTTCCTAAG 57.158 33.333 0.00 0.00 0.00 2.18
472 474 5.959618 TTTTTCTAAGCACCTTCCTAAGC 57.040 39.130 0.00 0.00 0.00 3.09
473 475 4.634012 TTTCTAAGCACCTTCCTAAGCA 57.366 40.909 0.00 0.00 0.00 3.91
474 476 3.611766 TCTAAGCACCTTCCTAAGCAC 57.388 47.619 0.00 0.00 0.00 4.40
475 477 2.236395 TCTAAGCACCTTCCTAAGCACC 59.764 50.000 0.00 0.00 0.00 5.01
476 478 1.068121 AAGCACCTTCCTAAGCACCT 58.932 50.000 0.00 0.00 0.00 4.00
477 479 1.952621 AGCACCTTCCTAAGCACCTA 58.047 50.000 0.00 0.00 0.00 3.08
478 480 1.834263 AGCACCTTCCTAAGCACCTAG 59.166 52.381 0.00 0.00 0.00 3.02
479 481 1.744114 GCACCTTCCTAAGCACCTAGC 60.744 57.143 0.00 0.00 46.19 3.42
491 493 2.711542 GCACCTAGCATTGTACAAGGT 58.288 47.619 20.31 15.10 44.79 3.50
492 494 3.869065 GCACCTAGCATTGTACAAGGTA 58.131 45.455 20.31 15.99 44.79 3.08
493 495 4.258543 GCACCTAGCATTGTACAAGGTAA 58.741 43.478 20.31 8.88 44.79 2.85
494 496 4.332819 GCACCTAGCATTGTACAAGGTAAG 59.667 45.833 20.31 16.51 44.79 2.34
495 497 4.332819 CACCTAGCATTGTACAAGGTAAGC 59.667 45.833 20.31 14.56 38.51 3.09
496 498 3.555956 CCTAGCATTGTACAAGGTAAGCG 59.444 47.826 20.31 9.11 0.00 4.68
497 499 3.053831 AGCATTGTACAAGGTAAGCGT 57.946 42.857 20.31 0.00 0.00 5.07
498 500 3.000727 AGCATTGTACAAGGTAAGCGTC 58.999 45.455 20.31 3.28 0.00 5.19
499 501 3.000727 GCATTGTACAAGGTAAGCGTCT 58.999 45.455 20.31 0.00 0.00 4.18
500 502 3.181520 GCATTGTACAAGGTAAGCGTCTG 60.182 47.826 20.31 7.93 0.00 3.51
501 503 2.074547 TGTACAAGGTAAGCGTCTGC 57.925 50.000 0.00 0.00 43.24 4.26
502 504 1.337447 TGTACAAGGTAAGCGTCTGCC 60.337 52.381 0.00 0.00 44.31 4.85
503 505 0.970640 TACAAGGTAAGCGTCTGCCA 59.029 50.000 0.00 0.00 44.31 4.92
504 506 0.324943 ACAAGGTAAGCGTCTGCCAT 59.675 50.000 0.00 0.00 44.31 4.40
505 507 0.729116 CAAGGTAAGCGTCTGCCATG 59.271 55.000 0.00 0.00 44.31 3.66
506 508 0.324943 AAGGTAAGCGTCTGCCATGT 59.675 50.000 0.00 0.00 44.31 3.21
507 509 1.191535 AGGTAAGCGTCTGCCATGTA 58.808 50.000 0.00 0.00 44.31 2.29
508 510 1.134788 AGGTAAGCGTCTGCCATGTAC 60.135 52.381 0.00 0.00 44.31 2.90
509 511 1.404986 GGTAAGCGTCTGCCATGTACA 60.405 52.381 0.00 0.00 44.31 2.90
510 512 2.343101 GTAAGCGTCTGCCATGTACAA 58.657 47.619 0.00 0.00 44.31 2.41
511 513 1.890876 AAGCGTCTGCCATGTACAAA 58.109 45.000 0.00 0.00 44.31 2.83
512 514 2.113860 AGCGTCTGCCATGTACAAAT 57.886 45.000 0.00 0.00 44.31 2.32
513 515 3.260475 AGCGTCTGCCATGTACAAATA 57.740 42.857 0.00 0.00 44.31 1.40
514 516 3.198068 AGCGTCTGCCATGTACAAATAG 58.802 45.455 0.00 0.00 44.31 1.73
515 517 3.118775 AGCGTCTGCCATGTACAAATAGA 60.119 43.478 0.00 0.00 44.31 1.98
516 518 3.001330 GCGTCTGCCATGTACAAATAGAC 59.999 47.826 16.56 16.56 33.98 2.59
517 519 4.180817 CGTCTGCCATGTACAAATAGACA 58.819 43.478 21.92 8.19 34.32 3.41
518 520 4.032900 CGTCTGCCATGTACAAATAGACAC 59.967 45.833 21.92 7.47 34.32 3.67
519 521 4.332819 GTCTGCCATGTACAAATAGACACC 59.667 45.833 19.44 2.64 34.69 4.16
520 522 3.266636 TGCCATGTACAAATAGACACCG 58.733 45.455 0.00 0.00 0.00 4.94
521 523 2.612212 GCCATGTACAAATAGACACCGG 59.388 50.000 0.00 0.00 0.00 5.28
522 524 3.869065 CCATGTACAAATAGACACCGGT 58.131 45.455 0.00 0.00 0.00 5.28
523 525 3.621268 CCATGTACAAATAGACACCGGTG 59.379 47.826 32.83 32.83 0.00 4.94
524 526 2.690786 TGTACAAATAGACACCGGTGC 58.309 47.619 34.26 25.13 0.00 5.01
525 527 2.300723 TGTACAAATAGACACCGGTGCT 59.699 45.455 34.26 29.94 0.00 4.40
526 528 3.510753 TGTACAAATAGACACCGGTGCTA 59.489 43.478 34.26 30.93 0.00 3.49
527 529 3.688694 ACAAATAGACACCGGTGCTAA 57.311 42.857 34.26 19.41 0.00 3.09
528 530 3.596214 ACAAATAGACACCGGTGCTAAG 58.404 45.455 34.26 25.45 0.00 2.18
529 531 3.259876 ACAAATAGACACCGGTGCTAAGA 59.740 43.478 34.26 16.68 0.00 2.10
530 532 4.250464 CAAATAGACACCGGTGCTAAGAA 58.750 43.478 34.26 16.34 0.00 2.52
531 533 4.546829 AATAGACACCGGTGCTAAGAAA 57.453 40.909 34.26 16.00 0.00 2.52
532 534 2.922740 AGACACCGGTGCTAAGAAAA 57.077 45.000 34.26 0.00 0.00 2.29
533 535 2.767505 AGACACCGGTGCTAAGAAAAG 58.232 47.619 34.26 7.12 0.00 2.27
534 536 1.197036 GACACCGGTGCTAAGAAAAGC 59.803 52.381 34.26 7.11 43.08 3.51
535 537 0.521735 CACCGGTGCTAAGAAAAGCC 59.478 55.000 24.02 0.00 42.05 4.35
536 538 0.400594 ACCGGTGCTAAGAAAAGCCT 59.599 50.000 6.12 0.00 42.05 4.58
537 539 0.804989 CCGGTGCTAAGAAAAGCCTG 59.195 55.000 0.00 0.00 42.05 4.85
538 540 1.610624 CCGGTGCTAAGAAAAGCCTGA 60.611 52.381 0.00 0.00 42.05 3.86
539 541 2.359900 CGGTGCTAAGAAAAGCCTGAT 58.640 47.619 0.00 0.00 42.05 2.90
540 542 2.749621 CGGTGCTAAGAAAAGCCTGATT 59.250 45.455 0.00 0.00 42.05 2.57
541 543 3.191371 CGGTGCTAAGAAAAGCCTGATTT 59.809 43.478 0.00 0.00 42.05 2.17
542 544 4.394920 CGGTGCTAAGAAAAGCCTGATTTA 59.605 41.667 0.00 0.00 42.05 1.40
543 545 5.066505 CGGTGCTAAGAAAAGCCTGATTTAT 59.933 40.000 0.00 0.00 42.05 1.40
544 546 6.404734 CGGTGCTAAGAAAAGCCTGATTTATT 60.405 38.462 0.00 0.00 42.05 1.40
545 547 7.323420 GGTGCTAAGAAAAGCCTGATTTATTT 58.677 34.615 0.00 0.00 42.05 1.40
546 548 7.489435 GGTGCTAAGAAAAGCCTGATTTATTTC 59.511 37.037 0.00 0.00 42.05 2.17
547 549 8.246871 GTGCTAAGAAAAGCCTGATTTATTTCT 58.753 33.333 0.00 0.00 42.05 2.52
548 550 8.806146 TGCTAAGAAAAGCCTGATTTATTTCTT 58.194 29.630 14.07 14.07 46.39 2.52
549 551 9.295214 GCTAAGAAAAGCCTGATTTATTTCTTC 57.705 33.333 13.26 0.46 43.23 2.87
552 554 9.702494 AAGAAAAGCCTGATTTATTTCTTCAAG 57.298 29.630 6.10 0.00 43.23 3.02
553 555 7.816513 AGAAAAGCCTGATTTATTTCTTCAAGC 59.183 33.333 0.00 0.00 37.10 4.01
554 556 6.594788 AAGCCTGATTTATTTCTTCAAGCA 57.405 33.333 0.00 0.00 30.88 3.91
555 557 5.958955 AGCCTGATTTATTTCTTCAAGCAC 58.041 37.500 0.00 0.00 30.88 4.40
556 558 5.105063 GCCTGATTTATTTCTTCAAGCACC 58.895 41.667 0.00 0.00 29.33 5.01
557 559 5.105595 GCCTGATTTATTTCTTCAAGCACCT 60.106 40.000 0.00 0.00 29.33 4.00
558 560 6.558909 CCTGATTTATTTCTTCAAGCACCTC 58.441 40.000 0.00 0.00 0.00 3.85
559 561 6.405176 CCTGATTTATTTCTTCAAGCACCTCC 60.405 42.308 0.00 0.00 0.00 4.30
560 562 5.418840 TGATTTATTTCTTCAAGCACCTCCC 59.581 40.000 0.00 0.00 0.00 4.30
561 563 4.657814 TTATTTCTTCAAGCACCTCCCT 57.342 40.909 0.00 0.00 0.00 4.20
562 564 5.772393 TTATTTCTTCAAGCACCTCCCTA 57.228 39.130 0.00 0.00 0.00 3.53
563 565 4.657814 ATTTCTTCAAGCACCTCCCTAA 57.342 40.909 0.00 0.00 0.00 2.69
564 566 4.447138 TTTCTTCAAGCACCTCCCTAAA 57.553 40.909 0.00 0.00 0.00 1.85
565 567 3.418684 TCTTCAAGCACCTCCCTAAAC 57.581 47.619 0.00 0.00 0.00 2.01
566 568 2.708861 TCTTCAAGCACCTCCCTAAACA 59.291 45.455 0.00 0.00 0.00 2.83
567 569 2.561478 TCAAGCACCTCCCTAAACAC 57.439 50.000 0.00 0.00 0.00 3.32
568 570 1.073284 TCAAGCACCTCCCTAAACACC 59.927 52.381 0.00 0.00 0.00 4.16
569 571 1.073923 CAAGCACCTCCCTAAACACCT 59.926 52.381 0.00 0.00 0.00 4.00
570 572 1.446016 AGCACCTCCCTAAACACCTT 58.554 50.000 0.00 0.00 0.00 3.50
571 573 1.073923 AGCACCTCCCTAAACACCTTG 59.926 52.381 0.00 0.00 0.00 3.61
572 574 1.534729 CACCTCCCTAAACACCTTGC 58.465 55.000 0.00 0.00 0.00 4.01
573 575 1.145571 ACCTCCCTAAACACCTTGCA 58.854 50.000 0.00 0.00 0.00 4.08
574 576 1.710809 ACCTCCCTAAACACCTTGCAT 59.289 47.619 0.00 0.00 0.00 3.96
575 577 2.110011 ACCTCCCTAAACACCTTGCATT 59.890 45.455 0.00 0.00 0.00 3.56
576 578 2.493278 CCTCCCTAAACACCTTGCATTG 59.507 50.000 0.00 0.00 0.00 2.82
577 579 3.157087 CTCCCTAAACACCTTGCATTGT 58.843 45.455 0.00 0.00 0.00 2.71
578 580 4.331968 CTCCCTAAACACCTTGCATTGTA 58.668 43.478 0.00 0.00 0.00 2.41
579 581 4.076394 TCCCTAAACACCTTGCATTGTAC 58.924 43.478 0.00 0.00 0.00 2.90
580 582 3.823873 CCCTAAACACCTTGCATTGTACA 59.176 43.478 0.00 0.00 0.00 2.90
581 583 4.279671 CCCTAAACACCTTGCATTGTACAA 59.720 41.667 11.41 11.41 0.00 2.41
582 584 5.460646 CCTAAACACCTTGCATTGTACAAG 58.539 41.667 14.65 7.46 43.36 3.16
597 599 4.385825 TGTACAAGGCCTAAGTTGAACTG 58.614 43.478 5.16 0.00 0.00 3.16
603 605 4.074970 AGGCCTAAGTTGAACTGTGAATG 58.925 43.478 1.29 0.00 0.00 2.67
643 645 8.494016 AAACATCTATACTGGAAACTGCTAAC 57.506 34.615 0.00 0.00 0.00 2.34
676 678 8.702163 TTGGAGAAAAAGAAAACTTTGCTAAG 57.298 30.769 6.35 6.35 37.40 2.18
690 695 0.977395 GCTAAGTGGTCACTCCCAGT 59.023 55.000 3.93 0.00 41.58 4.00
699 704 4.098196 GTGGTCACTCCCAGTATTCTCTAC 59.902 50.000 0.00 0.00 34.43 2.59
780 786 9.083080 GTAAACTACAACTCTGCAAAACAAATT 57.917 29.630 0.00 0.00 0.00 1.82
867 873 6.586082 CAGTAATCACCAGGTTTAATGTTTGC 59.414 38.462 0.00 0.00 0.00 3.68
1076 1083 2.039084 AGTGGAGACCAGTGAACAATCC 59.961 50.000 0.00 0.00 35.61 3.01
1252 1259 3.967987 AGACGGGTTTGCTAAGGAGATAT 59.032 43.478 0.00 0.00 0.00 1.63
1271 1278 5.699915 AGATATCTGTTCATTGCCGAATCAG 59.300 40.000 3.89 0.00 0.00 2.90
1319 1326 6.303839 TGGGCTACTGTTTAGAAGAAAATGT 58.696 36.000 0.00 0.00 0.00 2.71
1425 1432 4.515567 GCAAGGTTGGGTATTGCTATAGAC 59.484 45.833 3.21 0.00 44.57 2.59
1562 1569 4.282957 TGGAATATCAAGGTTGCTTTGCAA 59.717 37.500 0.00 0.00 46.80 4.08
1650 1657 0.179026 CTGGACGGGTCGATCCTAGA 60.179 60.000 14.05 0.00 35.86 2.43
1680 1687 4.335037 TGTTTACAGTTTCGGGGTTGTTAC 59.665 41.667 0.00 0.00 0.00 2.50
1767 1774 6.299141 ACTTCACTCAAGCTATTGAAAAGGA 58.701 36.000 0.00 0.00 44.68 3.36
1807 1814 8.947940 GCGATGTTTGATACTAAAATAGCAAAG 58.052 33.333 0.00 0.00 40.17 2.77
1973 1980 1.048601 AACAGGTCAGTGGTCGATGT 58.951 50.000 0.00 0.00 0.00 3.06
1974 1981 1.919240 ACAGGTCAGTGGTCGATGTA 58.081 50.000 0.00 0.00 0.00 2.29
1975 1982 1.544691 ACAGGTCAGTGGTCGATGTAC 59.455 52.381 0.00 0.00 0.00 2.90
1976 1983 1.819288 CAGGTCAGTGGTCGATGTACT 59.181 52.381 0.00 0.00 0.00 2.73
1977 1984 3.014623 CAGGTCAGTGGTCGATGTACTA 58.985 50.000 0.00 0.00 0.00 1.82
1978 1985 3.015327 AGGTCAGTGGTCGATGTACTAC 58.985 50.000 0.00 0.00 0.00 2.73
1979 1986 2.751259 GGTCAGTGGTCGATGTACTACA 59.249 50.000 0.00 0.00 33.61 2.74
1980 1987 3.192001 GGTCAGTGGTCGATGTACTACAA 59.808 47.826 0.00 0.00 33.61 2.41
1981 1988 4.413087 GTCAGTGGTCGATGTACTACAAG 58.587 47.826 0.00 0.00 33.61 3.16
1982 1989 3.119602 TCAGTGGTCGATGTACTACAAGC 60.120 47.826 0.00 0.00 33.61 4.01
1983 1990 3.090037 AGTGGTCGATGTACTACAAGCT 58.910 45.455 0.00 0.00 33.61 3.74
1984 1991 3.119459 AGTGGTCGATGTACTACAAGCTG 60.119 47.826 0.00 0.00 33.61 4.24
1985 1992 3.086282 TGGTCGATGTACTACAAGCTGA 58.914 45.455 0.00 0.00 0.00 4.26
1986 1993 3.508402 TGGTCGATGTACTACAAGCTGAA 59.492 43.478 0.00 0.00 0.00 3.02
1987 1994 4.021807 TGGTCGATGTACTACAAGCTGAAA 60.022 41.667 0.00 0.00 0.00 2.69
1988 1995 5.109903 GGTCGATGTACTACAAGCTGAAAT 58.890 41.667 0.00 0.00 0.00 2.17
1989 1996 6.127563 TGGTCGATGTACTACAAGCTGAAATA 60.128 38.462 0.00 0.00 0.00 1.40
1990 1997 6.924060 GGTCGATGTACTACAAGCTGAAATAT 59.076 38.462 0.00 0.00 0.00 1.28
1991 1998 7.115095 GGTCGATGTACTACAAGCTGAAATATC 59.885 40.741 0.00 0.00 0.00 1.63
1992 1999 7.863375 GTCGATGTACTACAAGCTGAAATATCT 59.137 37.037 0.00 0.00 0.00 1.98
1993 2000 7.862873 TCGATGTACTACAAGCTGAAATATCTG 59.137 37.037 0.00 0.00 0.00 2.90
2041 2048 9.811995 GGAATATACAATGTAAGTACTGACACA 57.188 33.333 15.63 10.96 0.00 3.72
2045 2052 6.281848 ACAATGTAAGTACTGACACAAACG 57.718 37.500 15.63 5.22 0.00 3.60
2046 2053 5.813672 ACAATGTAAGTACTGACACAAACGT 59.186 36.000 15.63 5.80 0.00 3.99
2047 2054 6.314400 ACAATGTAAGTACTGACACAAACGTT 59.686 34.615 15.63 2.13 0.00 3.99
2048 2055 5.954434 TGTAAGTACTGACACAAACGTTC 57.046 39.130 9.17 0.00 0.00 3.95
2049 2056 5.409211 TGTAAGTACTGACACAAACGTTCA 58.591 37.500 9.17 0.00 0.00 3.18
2050 2057 6.044046 TGTAAGTACTGACACAAACGTTCAT 58.956 36.000 9.17 0.00 0.00 2.57
2051 2058 7.201835 TGTAAGTACTGACACAAACGTTCATA 58.798 34.615 9.17 0.00 0.00 2.15
2052 2059 7.868922 TGTAAGTACTGACACAAACGTTCATAT 59.131 33.333 9.17 0.00 0.00 1.78
2053 2060 9.345517 GTAAGTACTGACACAAACGTTCATATA 57.654 33.333 5.40 0.00 0.00 0.86
2054 2061 8.997621 AAGTACTGACACAAACGTTCATATAT 57.002 30.769 0.00 0.00 0.00 0.86
2056 2063 9.512435 AGTACTGACACAAACGTTCATATATAC 57.488 33.333 0.00 0.00 0.00 1.47
2057 2064 7.445900 ACTGACACAAACGTTCATATATACG 57.554 36.000 0.00 6.51 43.08 3.06
2058 2065 6.020121 ACTGACACAAACGTTCATATATACGC 60.020 38.462 0.00 0.00 41.24 4.42
2059 2066 5.805994 TGACACAAACGTTCATATATACGCA 59.194 36.000 0.00 0.00 41.24 5.24
2060 2067 6.028040 ACACAAACGTTCATATATACGCAC 57.972 37.500 0.00 0.00 41.24 5.34
2061 2068 5.577554 ACACAAACGTTCATATATACGCACA 59.422 36.000 0.00 0.00 41.24 4.57
2062 2069 6.256975 ACACAAACGTTCATATATACGCACAT 59.743 34.615 0.00 0.00 41.24 3.21
2063 2070 7.435784 ACACAAACGTTCATATATACGCACATA 59.564 33.333 0.00 0.00 41.24 2.29
2068 2075 7.809665 ACGTTCATATATACGCACATACACTA 58.190 34.615 7.74 0.00 41.24 2.74
2084 2091 6.154021 ACATACACTATAACACCCCGGATATC 59.846 42.308 0.73 0.00 0.00 1.63
2100 2107 6.437162 CCCGGATATCATTTTCCCAATATGTT 59.563 38.462 0.73 0.00 0.00 2.71
2152 2161 7.165460 AGTTATTTTATTTTCTCGGGTTGGG 57.835 36.000 0.00 0.00 0.00 4.12
2167 2176 2.563702 GTTGGGTTTTGTCTCCGTGTA 58.436 47.619 0.00 0.00 0.00 2.90
2240 2249 3.819337 GGCATACATGTTCATCTCATGCT 59.181 43.478 20.90 0.00 44.26 3.79
2294 2303 2.261671 GCGCTTCGTTCTCCTCCA 59.738 61.111 0.00 0.00 0.00 3.86
2462 2472 1.838073 GAGGGACCGAAAAGGCCTCA 61.838 60.000 5.23 0.00 44.23 3.86
2464 2474 0.544697 GGGACCGAAAAGGCCTCATA 59.455 55.000 5.23 0.00 46.52 2.15
2480 2490 2.691526 CTCATATGTGTTGCAGCCCAAT 59.308 45.455 1.90 0.00 35.55 3.16
2482 2492 4.472496 TCATATGTGTTGCAGCCCAATAT 58.528 39.130 1.90 0.00 35.55 1.28
2643 2653 1.915769 CGGATCCCCTCCATCCCTC 60.916 68.421 6.06 0.00 45.24 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.699703 GAAATTTTACTTTGGTGGCACTATTAA 57.300 29.630 18.45 6.83 0.00 1.40
15 16 8.308207 GGAAATTTTACTTTGGTGGCACTATTA 58.692 33.333 18.45 1.88 0.00 0.98
16 17 7.016170 AGGAAATTTTACTTTGGTGGCACTATT 59.984 33.333 18.45 0.00 0.00 1.73
17 18 6.496911 AGGAAATTTTACTTTGGTGGCACTAT 59.503 34.615 18.45 0.00 0.00 2.12
18 19 5.836358 AGGAAATTTTACTTTGGTGGCACTA 59.164 36.000 18.45 8.99 0.00 2.74
19 20 4.653801 AGGAAATTTTACTTTGGTGGCACT 59.346 37.500 18.45 0.00 0.00 4.40
20 21 4.956085 AGGAAATTTTACTTTGGTGGCAC 58.044 39.130 9.70 9.70 0.00 5.01
21 22 5.836358 AGTAGGAAATTTTACTTTGGTGGCA 59.164 36.000 0.00 0.00 0.00 4.92
22 23 6.340962 AGTAGGAAATTTTACTTTGGTGGC 57.659 37.500 0.00 0.00 0.00 5.01
23 24 6.428771 TCGAGTAGGAAATTTTACTTTGGTGG 59.571 38.462 0.00 0.00 30.58 4.61
24 25 7.429636 TCGAGTAGGAAATTTTACTTTGGTG 57.570 36.000 0.00 0.00 30.58 4.17
25 26 8.631480 ATTCGAGTAGGAAATTTTACTTTGGT 57.369 30.769 0.00 0.00 30.58 3.67
33 34 8.827677 CGGAGAAATATTCGAGTAGGAAATTTT 58.172 33.333 0.00 0.00 34.02 1.82
85 86 2.436115 GTCGTGGCACCTAAGGGC 60.436 66.667 12.86 0.00 35.63 5.19
93 94 0.451783 GGAATTGGATGTCGTGGCAC 59.548 55.000 7.79 7.79 0.00 5.01
143 145 5.510520 CGAAATTCCAATGGGTTCCTCAAAA 60.511 40.000 0.00 0.00 34.93 2.44
145 147 3.509575 CGAAATTCCAATGGGTTCCTCAA 59.490 43.478 0.00 0.00 34.93 3.02
146 148 3.088532 CGAAATTCCAATGGGTTCCTCA 58.911 45.455 0.00 0.00 34.93 3.86
147 149 2.159240 GCGAAATTCCAATGGGTTCCTC 60.159 50.000 0.00 0.00 34.93 3.71
149 151 1.469079 CGCGAAATTCCAATGGGTTCC 60.469 52.381 0.00 0.00 34.93 3.62
150 152 1.470890 TCGCGAAATTCCAATGGGTTC 59.529 47.619 6.20 0.46 34.93 3.62
151 153 1.540267 TCGCGAAATTCCAATGGGTT 58.460 45.000 6.20 0.00 34.93 4.11
153 155 2.098934 TGATTCGCGAAATTCCAATGGG 59.901 45.455 27.23 0.00 0.00 4.00
154 156 3.419264 TGATTCGCGAAATTCCAATGG 57.581 42.857 27.23 0.00 0.00 3.16
155 157 4.661125 TCTTGATTCGCGAAATTCCAATG 58.339 39.130 27.23 17.59 0.00 2.82
156 158 4.963276 TCTTGATTCGCGAAATTCCAAT 57.037 36.364 27.23 7.16 0.00 3.16
157 159 4.661125 CATCTTGATTCGCGAAATTCCAA 58.339 39.130 27.23 22.63 0.00 3.53
158 160 3.487376 GCATCTTGATTCGCGAAATTCCA 60.487 43.478 27.23 17.48 0.00 3.53
159 161 3.038710 GCATCTTGATTCGCGAAATTCC 58.961 45.455 27.23 15.15 0.00 3.01
160 162 3.945179 AGCATCTTGATTCGCGAAATTC 58.055 40.909 27.23 19.85 0.00 2.17
161 163 3.242870 GGAGCATCTTGATTCGCGAAATT 60.243 43.478 27.23 10.65 33.73 1.82
162 164 2.289002 GGAGCATCTTGATTCGCGAAAT 59.711 45.455 27.23 14.28 33.73 2.17
163 165 1.665679 GGAGCATCTTGATTCGCGAAA 59.334 47.619 27.23 9.39 33.73 3.46
164 166 1.290203 GGAGCATCTTGATTCGCGAA 58.710 50.000 25.66 25.66 33.73 4.70
165 167 0.530650 GGGAGCATCTTGATTCGCGA 60.531 55.000 3.71 3.71 33.73 5.87
166 168 1.825285 CGGGAGCATCTTGATTCGCG 61.825 60.000 0.00 0.00 39.11 5.87
167 169 1.502163 CCGGGAGCATCTTGATTCGC 61.502 60.000 0.00 0.00 33.73 4.70
168 170 0.179073 ACCGGGAGCATCTTGATTCG 60.179 55.000 6.32 0.00 33.73 3.34
169 171 1.303309 CACCGGGAGCATCTTGATTC 58.697 55.000 6.32 0.00 33.73 2.52
276 278 3.834732 GTGATCTGCACTAACCCGT 57.165 52.632 0.00 0.00 44.27 5.28
296 298 4.887071 CACCTTGCATTGTATAAGGCCTTA 59.113 41.667 27.11 27.11 42.60 2.69
297 299 3.701040 CACCTTGCATTGTATAAGGCCTT 59.299 43.478 24.18 24.18 42.60 4.35
298 300 3.290710 CACCTTGCATTGTATAAGGCCT 58.709 45.455 0.00 0.00 42.60 5.19
299 301 2.223805 GCACCTTGCATTGTATAAGGCC 60.224 50.000 6.39 0.00 44.26 5.19
300 302 3.084070 GCACCTTGCATTGTATAAGGC 57.916 47.619 1.54 1.54 44.26 4.35
312 314 0.615850 ACCTCTCCTAAGCACCTTGC 59.384 55.000 0.00 0.00 45.46 4.01
313 315 1.065854 CCACCTCTCCTAAGCACCTTG 60.066 57.143 0.00 0.00 0.00 3.61
314 316 1.280457 CCACCTCTCCTAAGCACCTT 58.720 55.000 0.00 0.00 0.00 3.50
315 317 0.117340 ACCACCTCTCCTAAGCACCT 59.883 55.000 0.00 0.00 0.00 4.00
316 318 0.984995 AACCACCTCTCCTAAGCACC 59.015 55.000 0.00 0.00 0.00 5.01
317 319 1.339151 CCAACCACCTCTCCTAAGCAC 60.339 57.143 0.00 0.00 0.00 4.40
318 320 0.984230 CCAACCACCTCTCCTAAGCA 59.016 55.000 0.00 0.00 0.00 3.91
319 321 1.208293 CTCCAACCACCTCTCCTAAGC 59.792 57.143 0.00 0.00 0.00 3.09
320 322 2.821437 TCTCCAACCACCTCTCCTAAG 58.179 52.381 0.00 0.00 0.00 2.18
321 323 3.269592 TTCTCCAACCACCTCTCCTAA 57.730 47.619 0.00 0.00 0.00 2.69
322 324 3.269592 TTTCTCCAACCACCTCTCCTA 57.730 47.619 0.00 0.00 0.00 2.94
323 325 2.118403 TTTCTCCAACCACCTCTCCT 57.882 50.000 0.00 0.00 0.00 3.69
324 326 4.569719 TTATTTCTCCAACCACCTCTCC 57.430 45.455 0.00 0.00 0.00 3.71
325 327 6.180472 TGATTTATTTCTCCAACCACCTCTC 58.820 40.000 0.00 0.00 0.00 3.20
326 328 6.139679 TGATTTATTTCTCCAACCACCTCT 57.860 37.500 0.00 0.00 0.00 3.69
327 329 5.358160 CCTGATTTATTTCTCCAACCACCTC 59.642 44.000 0.00 0.00 0.00 3.85
328 330 5.264395 CCTGATTTATTTCTCCAACCACCT 58.736 41.667 0.00 0.00 0.00 4.00
329 331 4.142160 GCCTGATTTATTTCTCCAACCACC 60.142 45.833 0.00 0.00 0.00 4.61
330 332 4.706962 AGCCTGATTTATTTCTCCAACCAC 59.293 41.667 0.00 0.00 0.00 4.16
331 333 4.934356 AGCCTGATTTATTTCTCCAACCA 58.066 39.130 0.00 0.00 0.00 3.67
332 334 5.921962 AAGCCTGATTTATTTCTCCAACC 57.078 39.130 0.00 0.00 0.00 3.77
333 335 7.606349 AGAAAAGCCTGATTTATTTCTCCAAC 58.394 34.615 0.00 0.00 35.96 3.77
334 336 7.781324 AGAAAAGCCTGATTTATTTCTCCAA 57.219 32.000 0.00 0.00 35.96 3.53
335 337 7.781324 AAGAAAAGCCTGATTTATTTCTCCA 57.219 32.000 0.00 0.00 38.89 3.86
336 338 9.794685 CTTAAGAAAAGCCTGATTTATTTCTCC 57.205 33.333 0.00 0.00 38.89 3.71
337 339 9.295214 GCTTAAGAAAAGCCTGATTTATTTCTC 57.705 33.333 6.67 0.00 38.89 2.87
338 340 8.806146 TGCTTAAGAAAAGCCTGATTTATTTCT 58.194 29.630 6.67 0.00 42.36 2.52
339 341 8.864024 GTGCTTAAGAAAAGCCTGATTTATTTC 58.136 33.333 6.67 0.00 42.36 2.17
340 342 7.819415 GGTGCTTAAGAAAAGCCTGATTTATTT 59.181 33.333 6.67 0.00 42.36 1.40
341 343 7.039082 TGGTGCTTAAGAAAAGCCTGATTTATT 60.039 33.333 6.67 0.00 42.36 1.40
342 344 6.437162 TGGTGCTTAAGAAAAGCCTGATTTAT 59.563 34.615 6.67 0.00 42.36 1.40
343 345 5.772672 TGGTGCTTAAGAAAAGCCTGATTTA 59.227 36.000 6.67 0.00 42.36 1.40
344 346 4.588528 TGGTGCTTAAGAAAAGCCTGATTT 59.411 37.500 6.67 0.00 42.36 2.17
345 347 4.151883 TGGTGCTTAAGAAAAGCCTGATT 58.848 39.130 6.67 0.00 42.36 2.57
346 348 3.760684 CTGGTGCTTAAGAAAAGCCTGAT 59.239 43.478 6.67 0.00 42.36 2.90
347 349 3.149196 CTGGTGCTTAAGAAAAGCCTGA 58.851 45.455 6.67 0.00 42.36 3.86
348 350 2.887152 ACTGGTGCTTAAGAAAAGCCTG 59.113 45.455 6.67 0.37 42.36 4.85
349 351 2.887152 CACTGGTGCTTAAGAAAAGCCT 59.113 45.455 6.67 0.00 42.36 4.58
350 352 3.288809 CACTGGTGCTTAAGAAAAGCC 57.711 47.619 6.67 0.00 42.36 4.35
363 365 3.009723 CCTGTACAAATAGGCACTGGTG 58.990 50.000 0.00 0.00 41.52 4.17
364 366 3.350219 CCTGTACAAATAGGCACTGGT 57.650 47.619 0.00 0.00 41.52 4.00
371 373 1.933853 GCGTCTGCCTGTACAAATAGG 59.066 52.381 0.00 0.00 37.07 2.57
372 374 2.893637 AGCGTCTGCCTGTACAAATAG 58.106 47.619 0.00 0.00 44.31 1.73
373 375 3.328382 AAGCGTCTGCCTGTACAAATA 57.672 42.857 0.00 0.00 44.31 1.40
374 376 2.185004 AAGCGTCTGCCTGTACAAAT 57.815 45.000 0.00 0.00 44.31 2.32
375 377 2.823924 TAAGCGTCTGCCTGTACAAA 57.176 45.000 0.00 0.00 44.31 2.83
376 378 2.823924 TTAAGCGTCTGCCTGTACAA 57.176 45.000 0.00 0.00 44.31 2.41
377 379 3.328382 AATTAAGCGTCTGCCTGTACA 57.672 42.857 0.00 0.00 44.31 2.90
378 380 3.802685 CCTAATTAAGCGTCTGCCTGTAC 59.197 47.826 0.00 0.00 44.31 2.90
379 381 3.449737 ACCTAATTAAGCGTCTGCCTGTA 59.550 43.478 0.00 0.00 44.31 2.74
380 382 2.236395 ACCTAATTAAGCGTCTGCCTGT 59.764 45.455 0.00 0.00 44.31 4.00
381 383 2.609459 CACCTAATTAAGCGTCTGCCTG 59.391 50.000 0.00 0.00 44.31 4.85
382 384 2.236395 ACACCTAATTAAGCGTCTGCCT 59.764 45.455 0.00 0.00 44.31 4.75
383 385 2.608090 GACACCTAATTAAGCGTCTGCC 59.392 50.000 0.00 0.00 44.31 4.85
384 386 3.522553 AGACACCTAATTAAGCGTCTGC 58.477 45.455 4.34 0.00 35.96 4.26
385 387 5.000012 AGAGACACCTAATTAAGCGTCTG 58.000 43.478 9.04 0.00 36.87 3.51
386 388 4.951094 AGAGAGACACCTAATTAAGCGTCT 59.049 41.667 4.74 4.74 38.48 4.18
387 389 5.251601 AGAGAGACACCTAATTAAGCGTC 57.748 43.478 0.00 0.00 0.00 5.19
388 390 5.047235 ACAAGAGAGACACCTAATTAAGCGT 60.047 40.000 0.00 0.00 0.00 5.07
389 391 5.411781 ACAAGAGAGACACCTAATTAAGCG 58.588 41.667 0.00 0.00 0.00 4.68
390 392 7.773149 TCTACAAGAGAGACACCTAATTAAGC 58.227 38.462 0.00 0.00 0.00 3.09
395 397 8.919145 CCTATTTCTACAAGAGAGACACCTAAT 58.081 37.037 0.00 0.00 34.93 1.73
396 398 7.147880 GCCTATTTCTACAAGAGAGACACCTAA 60.148 40.741 0.00 0.00 34.93 2.69
397 399 6.321690 GCCTATTTCTACAAGAGAGACACCTA 59.678 42.308 0.00 0.00 34.93 3.08
398 400 5.128008 GCCTATTTCTACAAGAGAGACACCT 59.872 44.000 0.00 0.00 34.93 4.00
399 401 5.105310 TGCCTATTTCTACAAGAGAGACACC 60.105 44.000 0.00 0.00 34.93 4.16
400 402 5.808030 GTGCCTATTTCTACAAGAGAGACAC 59.192 44.000 0.00 0.00 34.93 3.67
401 403 5.105310 GGTGCCTATTTCTACAAGAGAGACA 60.105 44.000 0.00 0.00 34.93 3.41
402 404 5.353111 GGTGCCTATTTCTACAAGAGAGAC 58.647 45.833 0.00 0.00 34.93 3.36
403 405 4.098044 CGGTGCCTATTTCTACAAGAGAGA 59.902 45.833 0.00 0.00 34.93 3.10
404 406 4.363999 CGGTGCCTATTTCTACAAGAGAG 58.636 47.826 0.00 0.00 34.93 3.20
405 407 3.132289 CCGGTGCCTATTTCTACAAGAGA 59.868 47.826 0.00 0.00 0.00 3.10
406 408 3.118738 ACCGGTGCCTATTTCTACAAGAG 60.119 47.826 6.12 0.00 0.00 2.85
407 409 2.835764 ACCGGTGCCTATTTCTACAAGA 59.164 45.455 6.12 0.00 0.00 3.02
408 410 2.936498 CACCGGTGCCTATTTCTACAAG 59.064 50.000 24.02 0.00 0.00 3.16
409 411 2.980568 CACCGGTGCCTATTTCTACAA 58.019 47.619 24.02 0.00 0.00 2.41
410 412 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
422 424 1.151668 CTTCTTCTGAAGCACCGGTG 58.848 55.000 30.66 30.66 42.50 4.94
423 425 3.614399 CTTCTTCTGAAGCACCGGT 57.386 52.632 12.54 0.00 42.50 5.28
431 433 8.237811 AGAAAAATAAACAGGCTTCTTCTGAA 57.762 30.769 0.00 0.00 36.22 3.02
432 434 7.823745 AGAAAAATAAACAGGCTTCTTCTGA 57.176 32.000 0.00 0.00 36.22 3.27
433 435 9.617975 CTTAGAAAAATAAACAGGCTTCTTCTG 57.382 33.333 0.00 0.00 38.16 3.02
434 436 8.300286 GCTTAGAAAAATAAACAGGCTTCTTCT 58.700 33.333 0.00 0.00 0.00 2.85
435 437 8.082242 TGCTTAGAAAAATAAACAGGCTTCTTC 58.918 33.333 0.00 0.00 0.00 2.87
436 438 7.867909 GTGCTTAGAAAAATAAACAGGCTTCTT 59.132 33.333 0.00 0.00 0.00 2.52
437 439 7.371159 GTGCTTAGAAAAATAAACAGGCTTCT 58.629 34.615 0.00 0.00 0.00 2.85
438 440 6.586463 GGTGCTTAGAAAAATAAACAGGCTTC 59.414 38.462 0.00 0.00 0.00 3.86
439 441 6.267699 AGGTGCTTAGAAAAATAAACAGGCTT 59.732 34.615 0.00 0.00 0.00 4.35
440 442 5.775195 AGGTGCTTAGAAAAATAAACAGGCT 59.225 36.000 0.00 0.00 0.00 4.58
441 443 6.025749 AGGTGCTTAGAAAAATAAACAGGC 57.974 37.500 0.00 0.00 0.00 4.85
442 444 7.039714 AGGAAGGTGCTTAGAAAAATAAACAGG 60.040 37.037 0.00 0.00 0.00 4.00
443 445 7.886338 AGGAAGGTGCTTAGAAAAATAAACAG 58.114 34.615 0.00 0.00 0.00 3.16
444 446 7.833285 AGGAAGGTGCTTAGAAAAATAAACA 57.167 32.000 0.00 0.00 0.00 2.83
445 447 9.841880 CTTAGGAAGGTGCTTAGAAAAATAAAC 57.158 33.333 0.00 0.00 0.00 2.01
446 448 8.520351 GCTTAGGAAGGTGCTTAGAAAAATAAA 58.480 33.333 0.00 0.00 0.00 1.40
447 449 7.668052 TGCTTAGGAAGGTGCTTAGAAAAATAA 59.332 33.333 0.00 0.00 0.00 1.40
448 450 7.120726 GTGCTTAGGAAGGTGCTTAGAAAAATA 59.879 37.037 0.00 0.00 0.00 1.40
449 451 6.010219 TGCTTAGGAAGGTGCTTAGAAAAAT 58.990 36.000 0.00 0.00 0.00 1.82
450 452 5.240844 GTGCTTAGGAAGGTGCTTAGAAAAA 59.759 40.000 0.00 0.00 0.00 1.94
451 453 4.760204 GTGCTTAGGAAGGTGCTTAGAAAA 59.240 41.667 0.00 0.00 0.00 2.29
452 454 4.324267 GTGCTTAGGAAGGTGCTTAGAAA 58.676 43.478 0.00 0.00 0.00 2.52
453 455 3.307480 GGTGCTTAGGAAGGTGCTTAGAA 60.307 47.826 0.00 0.00 0.00 2.10
454 456 2.236395 GGTGCTTAGGAAGGTGCTTAGA 59.764 50.000 0.00 0.00 0.00 2.10
455 457 2.237392 AGGTGCTTAGGAAGGTGCTTAG 59.763 50.000 0.00 0.00 0.00 2.18
456 458 2.266279 AGGTGCTTAGGAAGGTGCTTA 58.734 47.619 0.00 0.00 0.00 3.09
457 459 1.068121 AGGTGCTTAGGAAGGTGCTT 58.932 50.000 0.00 0.00 0.00 3.91
458 460 1.834263 CTAGGTGCTTAGGAAGGTGCT 59.166 52.381 0.00 0.00 0.00 4.40
459 461 1.744114 GCTAGGTGCTTAGGAAGGTGC 60.744 57.143 0.00 0.00 38.95 5.01
460 462 1.555075 TGCTAGGTGCTTAGGAAGGTG 59.445 52.381 0.00 0.00 43.37 4.00
461 463 1.952621 TGCTAGGTGCTTAGGAAGGT 58.047 50.000 0.00 0.00 43.37 3.50
462 464 3.209410 CAATGCTAGGTGCTTAGGAAGG 58.791 50.000 0.00 0.00 43.37 3.46
463 465 3.878778 ACAATGCTAGGTGCTTAGGAAG 58.121 45.455 0.00 0.00 43.37 3.46
464 466 4.224147 TGTACAATGCTAGGTGCTTAGGAA 59.776 41.667 0.00 0.00 43.37 3.36
465 467 3.772572 TGTACAATGCTAGGTGCTTAGGA 59.227 43.478 0.00 0.00 43.37 2.94
466 468 4.137116 TGTACAATGCTAGGTGCTTAGG 57.863 45.455 0.00 0.00 43.37 2.69
467 469 4.572389 CCTTGTACAATGCTAGGTGCTTAG 59.428 45.833 9.13 0.00 43.37 2.18
468 470 4.019681 ACCTTGTACAATGCTAGGTGCTTA 60.020 41.667 14.12 0.00 39.80 3.09
469 471 3.244911 ACCTTGTACAATGCTAGGTGCTT 60.245 43.478 14.12 0.00 39.80 3.91
470 472 2.305927 ACCTTGTACAATGCTAGGTGCT 59.694 45.455 14.12 0.00 39.80 4.40
471 473 2.711542 ACCTTGTACAATGCTAGGTGC 58.288 47.619 14.12 0.00 39.80 5.01
472 474 4.332819 GCTTACCTTGTACAATGCTAGGTG 59.667 45.833 21.44 10.29 41.01 4.00
473 475 4.514401 GCTTACCTTGTACAATGCTAGGT 58.486 43.478 17.94 17.94 42.80 3.08
474 476 3.555956 CGCTTACCTTGTACAATGCTAGG 59.444 47.826 9.13 8.88 35.49 3.02
475 477 4.181578 ACGCTTACCTTGTACAATGCTAG 58.818 43.478 9.13 8.32 0.00 3.42
476 478 4.081862 AGACGCTTACCTTGTACAATGCTA 60.082 41.667 9.13 0.00 0.00 3.49
477 479 3.000727 GACGCTTACCTTGTACAATGCT 58.999 45.455 9.13 0.64 0.00 3.79
478 480 3.000727 AGACGCTTACCTTGTACAATGC 58.999 45.455 9.13 7.93 0.00 3.56
479 481 3.181520 GCAGACGCTTACCTTGTACAATG 60.182 47.826 9.13 9.11 34.30 2.82
480 482 3.000727 GCAGACGCTTACCTTGTACAAT 58.999 45.455 9.13 0.00 34.30 2.71
481 483 2.409975 GCAGACGCTTACCTTGTACAA 58.590 47.619 8.28 8.28 34.30 2.41
482 484 1.337447 GGCAGACGCTTACCTTGTACA 60.337 52.381 0.00 0.00 38.60 2.90
483 485 1.337447 TGGCAGACGCTTACCTTGTAC 60.337 52.381 0.00 0.00 38.60 2.90
484 486 0.970640 TGGCAGACGCTTACCTTGTA 59.029 50.000 0.00 0.00 38.60 2.41
485 487 0.324943 ATGGCAGACGCTTACCTTGT 59.675 50.000 0.00 0.00 38.60 3.16
486 488 0.729116 CATGGCAGACGCTTACCTTG 59.271 55.000 0.00 0.00 38.60 3.61
487 489 0.324943 ACATGGCAGACGCTTACCTT 59.675 50.000 0.00 0.00 38.60 3.50
488 490 1.134788 GTACATGGCAGACGCTTACCT 60.135 52.381 0.00 0.00 38.60 3.08
489 491 1.287425 GTACATGGCAGACGCTTACC 58.713 55.000 0.00 0.00 38.60 2.85
490 492 2.004583 TGTACATGGCAGACGCTTAC 57.995 50.000 0.00 0.00 38.60 2.34
491 493 2.753055 TTGTACATGGCAGACGCTTA 57.247 45.000 0.00 0.00 38.60 3.09
492 494 1.890876 TTTGTACATGGCAGACGCTT 58.109 45.000 0.00 0.00 38.60 4.68
493 495 2.113860 ATTTGTACATGGCAGACGCT 57.886 45.000 0.00 0.00 38.60 5.07
494 496 3.001330 GTCTATTTGTACATGGCAGACGC 59.999 47.826 0.00 0.00 37.44 5.19
495 497 4.032900 GTGTCTATTTGTACATGGCAGACG 59.967 45.833 16.29 0.00 34.94 4.18
496 498 4.332819 GGTGTCTATTTGTACATGGCAGAC 59.667 45.833 15.28 15.28 33.26 3.51
497 499 4.513442 GGTGTCTATTTGTACATGGCAGA 58.487 43.478 0.00 0.00 0.00 4.26
498 500 3.309682 CGGTGTCTATTTGTACATGGCAG 59.690 47.826 0.00 0.00 0.00 4.85
499 501 3.266636 CGGTGTCTATTTGTACATGGCA 58.733 45.455 0.00 0.00 0.00 4.92
500 502 2.612212 CCGGTGTCTATTTGTACATGGC 59.388 50.000 0.00 0.00 0.00 4.40
501 503 3.621268 CACCGGTGTCTATTTGTACATGG 59.379 47.826 26.95 0.00 32.97 3.66
502 504 3.063452 GCACCGGTGTCTATTTGTACATG 59.937 47.826 33.92 4.78 0.00 3.21
503 505 3.055385 AGCACCGGTGTCTATTTGTACAT 60.055 43.478 33.92 5.51 0.00 2.29
504 506 2.300723 AGCACCGGTGTCTATTTGTACA 59.699 45.455 33.92 0.00 0.00 2.90
505 507 2.968675 AGCACCGGTGTCTATTTGTAC 58.031 47.619 33.92 14.30 0.00 2.90
506 508 4.463539 TCTTAGCACCGGTGTCTATTTGTA 59.536 41.667 33.92 17.98 0.00 2.41
507 509 3.259876 TCTTAGCACCGGTGTCTATTTGT 59.740 43.478 33.92 12.64 0.00 2.83
508 510 3.857052 TCTTAGCACCGGTGTCTATTTG 58.143 45.455 33.92 23.32 0.00 2.32
509 511 4.546829 TTCTTAGCACCGGTGTCTATTT 57.453 40.909 33.92 15.72 0.00 1.40
510 512 4.546829 TTTCTTAGCACCGGTGTCTATT 57.453 40.909 33.92 17.35 0.00 1.73
511 513 4.504858 CTTTTCTTAGCACCGGTGTCTAT 58.495 43.478 33.92 20.07 0.00 1.98
512 514 3.863400 GCTTTTCTTAGCACCGGTGTCTA 60.863 47.826 33.92 28.97 40.89 2.59
513 515 2.767505 CTTTTCTTAGCACCGGTGTCT 58.232 47.619 33.92 29.94 0.00 3.41
514 516 1.197036 GCTTTTCTTAGCACCGGTGTC 59.803 52.381 33.92 25.30 40.89 3.67
515 517 1.235724 GCTTTTCTTAGCACCGGTGT 58.764 50.000 33.92 22.69 40.89 4.16
516 518 0.521735 GGCTTTTCTTAGCACCGGTG 59.478 55.000 30.66 30.66 43.02 4.94
517 519 0.400594 AGGCTTTTCTTAGCACCGGT 59.599 50.000 0.00 0.00 43.02 5.28
518 520 0.804989 CAGGCTTTTCTTAGCACCGG 59.195 55.000 0.00 0.00 43.02 5.28
519 521 1.808411 TCAGGCTTTTCTTAGCACCG 58.192 50.000 0.00 0.00 43.02 4.94
520 522 4.790765 AAATCAGGCTTTTCTTAGCACC 57.209 40.909 0.00 0.00 43.02 5.01
521 523 8.246871 AGAAATAAATCAGGCTTTTCTTAGCAC 58.753 33.333 4.24 0.00 43.02 4.40
522 524 8.353423 AGAAATAAATCAGGCTTTTCTTAGCA 57.647 30.769 4.24 0.00 43.02 3.49
523 525 9.295214 GAAGAAATAAATCAGGCTTTTCTTAGC 57.705 33.333 17.67 7.27 43.16 3.09
526 528 9.702494 CTTGAAGAAATAAATCAGGCTTTTCTT 57.298 29.630 17.68 17.68 44.80 2.52
527 529 7.816513 GCTTGAAGAAATAAATCAGGCTTTTCT 59.183 33.333 0.00 4.24 38.04 2.52
528 530 7.599998 TGCTTGAAGAAATAAATCAGGCTTTTC 59.400 33.333 9.88 0.00 35.02 2.29
529 531 7.386025 GTGCTTGAAGAAATAAATCAGGCTTTT 59.614 33.333 9.88 0.00 35.02 2.27
530 532 6.870439 GTGCTTGAAGAAATAAATCAGGCTTT 59.130 34.615 9.88 0.00 35.02 3.51
531 533 6.393171 GTGCTTGAAGAAATAAATCAGGCTT 58.607 36.000 9.88 0.00 35.02 4.35
532 534 5.105595 GGTGCTTGAAGAAATAAATCAGGCT 60.106 40.000 9.88 0.00 35.02 4.58
533 535 5.105063 GGTGCTTGAAGAAATAAATCAGGC 58.895 41.667 0.00 2.60 34.63 4.85
534 536 6.405176 GGAGGTGCTTGAAGAAATAAATCAGG 60.405 42.308 0.00 0.00 0.00 3.86
535 537 6.405176 GGGAGGTGCTTGAAGAAATAAATCAG 60.405 42.308 0.00 0.00 0.00 2.90
536 538 5.418840 GGGAGGTGCTTGAAGAAATAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
537 539 5.654209 AGGGAGGTGCTTGAAGAAATAAATC 59.346 40.000 0.00 0.00 0.00 2.17
538 540 5.583932 AGGGAGGTGCTTGAAGAAATAAAT 58.416 37.500 0.00 0.00 0.00 1.40
539 541 4.998051 AGGGAGGTGCTTGAAGAAATAAA 58.002 39.130 0.00 0.00 0.00 1.40
540 542 4.657814 AGGGAGGTGCTTGAAGAAATAA 57.342 40.909 0.00 0.00 0.00 1.40
541 543 5.772393 TTAGGGAGGTGCTTGAAGAAATA 57.228 39.130 0.00 0.00 0.00 1.40
542 544 4.657814 TTAGGGAGGTGCTTGAAGAAAT 57.342 40.909 0.00 0.00 0.00 2.17
543 545 4.142038 GTTTAGGGAGGTGCTTGAAGAAA 58.858 43.478 0.00 0.00 0.00 2.52
544 546 3.137544 TGTTTAGGGAGGTGCTTGAAGAA 59.862 43.478 0.00 0.00 0.00 2.52
545 547 2.708861 TGTTTAGGGAGGTGCTTGAAGA 59.291 45.455 0.00 0.00 0.00 2.87
546 548 2.814336 GTGTTTAGGGAGGTGCTTGAAG 59.186 50.000 0.00 0.00 0.00 3.02
547 549 2.488347 GGTGTTTAGGGAGGTGCTTGAA 60.488 50.000 0.00 0.00 0.00 2.69
548 550 1.073284 GGTGTTTAGGGAGGTGCTTGA 59.927 52.381 0.00 0.00 0.00 3.02
549 551 1.073923 AGGTGTTTAGGGAGGTGCTTG 59.926 52.381 0.00 0.00 0.00 4.01
550 552 1.446016 AGGTGTTTAGGGAGGTGCTT 58.554 50.000 0.00 0.00 0.00 3.91
551 553 1.073923 CAAGGTGTTTAGGGAGGTGCT 59.926 52.381 0.00 0.00 0.00 4.40
552 554 1.534729 CAAGGTGTTTAGGGAGGTGC 58.465 55.000 0.00 0.00 0.00 5.01
553 555 1.202879 TGCAAGGTGTTTAGGGAGGTG 60.203 52.381 0.00 0.00 0.00 4.00
554 556 1.145571 TGCAAGGTGTTTAGGGAGGT 58.854 50.000 0.00 0.00 0.00 3.85
555 557 2.493278 CAATGCAAGGTGTTTAGGGAGG 59.507 50.000 0.00 0.00 0.00 4.30
556 558 3.157087 ACAATGCAAGGTGTTTAGGGAG 58.843 45.455 0.00 0.00 0.00 4.30
557 559 3.237268 ACAATGCAAGGTGTTTAGGGA 57.763 42.857 0.00 0.00 0.00 4.20
558 560 3.823873 TGTACAATGCAAGGTGTTTAGGG 59.176 43.478 6.39 0.00 0.00 3.53
559 561 5.446143 TTGTACAATGCAAGGTGTTTAGG 57.554 39.130 3.59 0.00 0.00 2.69
568 570 3.758554 ACTTAGGCCTTGTACAATGCAAG 59.241 43.478 29.20 25.68 42.00 4.01
569 571 3.761897 ACTTAGGCCTTGTACAATGCAA 58.238 40.909 29.20 18.40 34.30 4.08
570 572 3.433306 ACTTAGGCCTTGTACAATGCA 57.567 42.857 29.20 13.23 34.30 3.96
571 573 3.756434 TCAACTTAGGCCTTGTACAATGC 59.244 43.478 23.06 23.06 0.00 3.56
572 574 5.473504 AGTTCAACTTAGGCCTTGTACAATG 59.526 40.000 12.58 7.68 0.00 2.82
573 575 5.473504 CAGTTCAACTTAGGCCTTGTACAAT 59.526 40.000 12.58 0.00 0.00 2.71
574 576 4.819630 CAGTTCAACTTAGGCCTTGTACAA 59.180 41.667 12.58 8.28 0.00 2.41
575 577 4.141574 ACAGTTCAACTTAGGCCTTGTACA 60.142 41.667 12.58 0.00 0.00 2.90
576 578 4.213482 CACAGTTCAACTTAGGCCTTGTAC 59.787 45.833 12.58 7.25 0.00 2.90
577 579 4.101898 TCACAGTTCAACTTAGGCCTTGTA 59.898 41.667 12.58 0.00 0.00 2.41
578 580 3.118038 TCACAGTTCAACTTAGGCCTTGT 60.118 43.478 12.58 8.10 0.00 3.16
579 581 3.476552 TCACAGTTCAACTTAGGCCTTG 58.523 45.455 12.58 7.32 0.00 3.61
580 582 3.857157 TCACAGTTCAACTTAGGCCTT 57.143 42.857 12.58 0.00 0.00 4.35
581 583 3.857157 TTCACAGTTCAACTTAGGCCT 57.143 42.857 11.78 11.78 0.00 5.19
582 584 3.821033 ACATTCACAGTTCAACTTAGGCC 59.179 43.478 0.00 0.00 0.00 5.19
583 585 4.275936 ACACATTCACAGTTCAACTTAGGC 59.724 41.667 0.00 0.00 0.00 3.93
584 586 6.377327 AACACATTCACAGTTCAACTTAGG 57.623 37.500 0.00 0.00 0.00 2.69
585 587 9.385902 CAATAACACATTCACAGTTCAACTTAG 57.614 33.333 0.00 0.00 0.00 2.18
597 599 6.475076 TGTTTCTGCAACAATAACACATTCAC 59.525 34.615 0.00 0.00 42.76 3.18
626 628 3.587506 ACCCAGTTAGCAGTTTCCAGTAT 59.412 43.478 0.00 0.00 0.00 2.12
643 645 6.321435 AGTTTTCTTTTTCTCCAAGTACCCAG 59.679 38.462 0.00 0.00 0.00 4.45
676 678 3.100671 AGAGAATACTGGGAGTGACCAC 58.899 50.000 0.00 0.00 41.20 4.16
690 695 6.863275 TCTTTCGCTGATTGTGTAGAGAATA 58.137 36.000 0.00 0.00 33.75 1.75
780 786 7.281841 TGTGAACCTGATGATCTAATTATGCA 58.718 34.615 0.00 0.00 0.00 3.96
818 824 2.769663 TGGTTTGATACTAGCCACCGAT 59.230 45.455 0.00 0.00 0.00 4.18
923 930 6.406400 CCACCTGTTCCAAACAAGTAAATTCA 60.406 38.462 0.00 0.00 41.61 2.57
1252 1259 1.739466 GCTGATTCGGCAATGAACAGA 59.261 47.619 12.66 0.00 35.55 3.41
1271 1278 2.558359 AGCCTAACAACATTCTTGTGGC 59.442 45.455 6.49 6.49 40.03 5.01
1319 1326 9.268268 GGATATACTCGGTGACAATCATTAAAA 57.732 33.333 0.00 0.00 0.00 1.52
1364 1371 0.179062 ATCGCTGCCATGGAGAAGAC 60.179 55.000 18.40 0.00 0.00 3.01
1465 1472 5.761726 GCTTGATATCACCATGACTGATTGA 59.238 40.000 4.48 0.00 30.76 2.57
1472 1479 3.812053 GTCAGGCTTGATATCACCATGAC 59.188 47.826 23.29 23.29 34.47 3.06
1562 1569 0.320697 GGTGTAAGCAGTTCCGTCCT 59.679 55.000 0.00 0.00 0.00 3.85
1650 1657 5.303333 ACCCCGAAACTGTAAACATCATTTT 59.697 36.000 0.00 0.00 0.00 1.82
1767 1774 2.498167 ACATCGCTCTTGCTGTTTTCT 58.502 42.857 0.00 0.00 36.97 2.52
1807 1814 3.316308 ACAGAACTTTCATGTTGCTCACC 59.684 43.478 0.00 0.00 0.00 4.02
1969 1976 7.095439 GGCAGATATTTCAGCTTGTAGTACATC 60.095 40.741 3.28 0.00 34.95 3.06
1973 1980 6.233905 TGGCAGATATTTCAGCTTGTAGTA 57.766 37.500 0.95 0.00 34.95 1.82
1974 1981 5.102953 TGGCAGATATTTCAGCTTGTAGT 57.897 39.130 0.95 0.00 34.95 2.73
1975 1982 6.441093 TTTGGCAGATATTTCAGCTTGTAG 57.559 37.500 0.95 0.00 34.95 2.74
1976 1983 6.832520 TTTTGGCAGATATTTCAGCTTGTA 57.167 33.333 0.95 0.00 34.95 2.41
1977 1984 5.726980 TTTTGGCAGATATTTCAGCTTGT 57.273 34.783 0.95 0.00 34.95 3.16
2015 2022 9.811995 TGTGTCAGTACTTACATTGTATATTCC 57.188 33.333 12.81 0.00 0.00 3.01
2019 2026 9.131416 CGTTTGTGTCAGTACTTACATTGTATA 57.869 33.333 12.81 0.00 0.00 1.47
2020 2027 7.654520 ACGTTTGTGTCAGTACTTACATTGTAT 59.345 33.333 12.81 0.00 0.00 2.29
2021 2028 6.979817 ACGTTTGTGTCAGTACTTACATTGTA 59.020 34.615 12.81 0.00 0.00 2.41
2022 2029 5.813672 ACGTTTGTGTCAGTACTTACATTGT 59.186 36.000 12.81 5.38 0.00 2.71
2023 2030 6.281848 ACGTTTGTGTCAGTACTTACATTG 57.718 37.500 12.81 4.85 0.00 2.82
2024 2031 6.535865 TGAACGTTTGTGTCAGTACTTACATT 59.464 34.615 12.81 2.62 0.00 2.71
2025 2032 6.044046 TGAACGTTTGTGTCAGTACTTACAT 58.956 36.000 12.81 0.00 0.00 2.29
2026 2033 5.409211 TGAACGTTTGTGTCAGTACTTACA 58.591 37.500 5.78 5.78 0.00 2.41
2027 2034 5.954434 TGAACGTTTGTGTCAGTACTTAC 57.046 39.130 0.46 0.00 0.00 2.34
2029 2036 8.997621 ATATATGAACGTTTGTGTCAGTACTT 57.002 30.769 0.46 0.00 0.00 2.24
2030 2037 9.512435 GTATATATGAACGTTTGTGTCAGTACT 57.488 33.333 0.46 0.00 0.00 2.73
2031 2038 8.466799 CGTATATATGAACGTTTGTGTCAGTAC 58.533 37.037 0.46 0.00 34.48 2.73
2032 2039 7.166307 GCGTATATATGAACGTTTGTGTCAGTA 59.834 37.037 0.46 0.00 41.10 2.74
2033 2040 6.020121 GCGTATATATGAACGTTTGTGTCAGT 60.020 38.462 0.46 0.00 41.10 3.41
2034 2041 6.020201 TGCGTATATATGAACGTTTGTGTCAG 60.020 38.462 0.46 0.00 41.10 3.51
2035 2042 5.805994 TGCGTATATATGAACGTTTGTGTCA 59.194 36.000 0.46 0.00 41.10 3.58
2036 2043 6.118195 GTGCGTATATATGAACGTTTGTGTC 58.882 40.000 0.46 0.00 41.10 3.67
2037 2044 5.577554 TGTGCGTATATATGAACGTTTGTGT 59.422 36.000 0.46 0.00 41.10 3.72
2038 2045 6.026873 TGTGCGTATATATGAACGTTTGTG 57.973 37.500 0.46 0.00 41.10 3.33
2039 2046 6.838198 ATGTGCGTATATATGAACGTTTGT 57.162 33.333 0.46 0.00 41.10 2.83
2040 2047 7.734297 GTGTATGTGCGTATATATGAACGTTTG 59.266 37.037 12.23 0.00 41.10 2.93
2041 2048 7.650504 AGTGTATGTGCGTATATATGAACGTTT 59.349 33.333 12.23 1.80 41.10 3.60
2042 2049 7.143340 AGTGTATGTGCGTATATATGAACGTT 58.857 34.615 12.23 0.00 41.10 3.99
2043 2050 6.675026 AGTGTATGTGCGTATATATGAACGT 58.325 36.000 11.77 11.77 41.10 3.99
2044 2051 8.836959 ATAGTGTATGTGCGTATATATGAACG 57.163 34.615 6.12 4.05 41.92 3.95
2050 2057 8.461222 GGGTGTTATAGTGTATGTGCGTATATA 58.539 37.037 0.00 0.00 0.00 0.86
2051 2058 7.318141 GGGTGTTATAGTGTATGTGCGTATAT 58.682 38.462 0.00 0.00 0.00 0.86
2052 2059 6.294675 GGGGTGTTATAGTGTATGTGCGTATA 60.295 42.308 0.00 0.00 0.00 1.47
2053 2060 5.510179 GGGGTGTTATAGTGTATGTGCGTAT 60.510 44.000 0.00 0.00 0.00 3.06
2054 2061 4.202141 GGGGTGTTATAGTGTATGTGCGTA 60.202 45.833 0.00 0.00 0.00 4.42
2055 2062 3.431207 GGGGTGTTATAGTGTATGTGCGT 60.431 47.826 0.00 0.00 0.00 5.24
2056 2063 3.128349 GGGGTGTTATAGTGTATGTGCG 58.872 50.000 0.00 0.00 0.00 5.34
2057 2064 3.128349 CGGGGTGTTATAGTGTATGTGC 58.872 50.000 0.00 0.00 0.00 4.57
2058 2065 3.385433 TCCGGGGTGTTATAGTGTATGTG 59.615 47.826 0.00 0.00 0.00 3.21
2059 2066 3.645434 TCCGGGGTGTTATAGTGTATGT 58.355 45.455 0.00 0.00 0.00 2.29
2060 2067 4.884668 ATCCGGGGTGTTATAGTGTATG 57.115 45.455 0.00 0.00 0.00 2.39
2061 2068 6.258354 TGATATCCGGGGTGTTATAGTGTAT 58.742 40.000 0.00 0.00 0.00 2.29
2062 2069 5.643176 TGATATCCGGGGTGTTATAGTGTA 58.357 41.667 0.00 0.00 0.00 2.90
2063 2070 4.485875 TGATATCCGGGGTGTTATAGTGT 58.514 43.478 0.00 0.00 0.00 3.55
2068 2075 5.321927 GGAAAATGATATCCGGGGTGTTAT 58.678 41.667 0.00 0.00 0.00 1.89
2152 2161 7.124347 TGATAACAATACACGGAGACAAAAC 57.876 36.000 0.00 0.00 0.00 2.43
2167 2176 7.576861 TGAGATGCATGACAATGATAACAAT 57.423 32.000 2.46 0.00 35.67 2.71
2240 2249 1.268352 CAACGGGGAAAATGCTCGAAA 59.732 47.619 0.00 0.00 0.00 3.46
2294 2303 7.118390 CACGAAAGAAAGATAGAAATGACCACT 59.882 37.037 0.00 0.00 0.00 4.00
2462 2472 3.828451 GGATATTGGGCTGCAACACATAT 59.172 43.478 0.50 6.50 0.00 1.78
2464 2474 2.034124 GGATATTGGGCTGCAACACAT 58.966 47.619 0.50 0.00 0.00 3.21
2480 2490 1.313889 TGGGCCAAAATGGAGGGATA 58.686 50.000 2.13 0.00 40.96 2.59
2482 2492 0.192064 TTTGGGCCAAAATGGAGGGA 59.808 50.000 28.69 3.04 40.96 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.