Multiple sequence alignment - TraesCS7A01G145300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G145300 chr7A 100.000 3642 0 0 1 3642 96562077 96565718 0.000000e+00 6726.0
1 TraesCS7A01G145300 chr7A 89.640 444 35 6 366 804 255214458 255214895 4.930000e-154 555.0
2 TraesCS7A01G145300 chr7A 100.000 209 0 0 4154 4362 96566230 96566438 1.900000e-103 387.0
3 TraesCS7A01G145300 chr7A 93.529 170 10 1 1682 1851 494786829 494786997 7.240000e-63 252.0
4 TraesCS7A01G145300 chr7D 95.060 1822 78 9 1823 3642 93786383 93788194 0.000000e+00 2856.0
5 TraesCS7A01G145300 chr7D 91.232 901 38 13 804 1685 93785426 93786304 0.000000e+00 1188.0
6 TraesCS7A01G145300 chr7D 91.250 400 27 3 365 756 219837018 219836619 4.960000e-149 538.0
7 TraesCS7A01G145300 chr7D 94.737 209 9 2 4154 4362 93788230 93788436 1.510000e-84 324.0
8 TraesCS7A01G145300 chr7D 92.523 107 3 1 2 108 261868503 261868402 9.770000e-32 148.0
9 TraesCS7A01G145300 chr7D 85.714 84 8 2 193 276 93785271 93785350 7.770000e-13 86.1
10 TraesCS7A01G145300 chr7B 95.046 969 40 6 2679 3642 46999159 47000124 0.000000e+00 1517.0
11 TraesCS7A01G145300 chr7B 90.433 878 37 18 831 1675 46997452 46998315 0.000000e+00 1112.0
12 TraesCS7A01G145300 chr7B 89.116 588 47 10 1844 2421 46998360 46998940 0.000000e+00 715.0
13 TraesCS7A01G145300 chr7B 90.404 396 29 4 366 753 11930218 11929824 3.010000e-141 512.0
14 TraesCS7A01G145300 chr7B 96.078 204 7 1 4154 4357 47000160 47000362 9.040000e-87 331.0
15 TraesCS7A01G145300 chr7B 92.442 172 12 1 1676 1847 176002998 176002828 1.210000e-60 244.0
16 TraesCS7A01G145300 chr7B 88.333 120 8 3 1 119 624792670 624792556 5.880000e-29 139.0
17 TraesCS7A01G145300 chr7B 92.135 89 5 2 116 203 46996879 46996966 1.650000e-24 124.0
18 TraesCS7A01G145300 chr2A 92.601 446 25 4 365 804 283943315 283942872 6.150000e-178 634.0
19 TraesCS7A01G145300 chr2A 90.268 411 30 6 354 756 683580510 683580102 2.990000e-146 529.0
20 TraesCS7A01G145300 chr5B 89.755 449 37 5 363 805 272166286 272165841 2.280000e-157 566.0
21 TraesCS7A01G145300 chr5B 92.899 169 10 2 1682 1850 407219393 407219559 1.210000e-60 244.0
22 TraesCS7A01G145300 chr6A 91.457 398 27 4 366 756 105536279 105536676 1.380000e-149 540.0
23 TraesCS7A01G145300 chr6A 91.184 397 28 3 367 756 237919753 237919357 2.310000e-147 532.0
24 TraesCS7A01G145300 chr2D 90.385 416 32 6 365 773 156035395 156035809 1.380000e-149 540.0
25 TraesCS7A01G145300 chr5A 88.813 438 40 5 366 796 595887573 595888008 2.990000e-146 529.0
26 TraesCS7A01G145300 chr5A 90.526 190 15 3 1682 1869 320214405 320214217 9.370000e-62 248.0
27 TraesCS7A01G145300 chr5A 93.373 166 11 0 1679 1844 605231140 605231305 3.370000e-61 246.0
28 TraesCS7A01G145300 chr5A 89.247 186 18 1 1671 1856 558675488 558675671 9.430000e-57 231.0
29 TraesCS7A01G145300 chr1A 91.384 383 24 4 366 741 533252918 533252538 2.330000e-142 516.0
30 TraesCS7A01G145300 chr1B 86.515 482 35 15 360 813 17347646 17348125 1.810000e-138 503.0
31 TraesCS7A01G145300 chr1B 93.204 103 5 2 3 104 510803353 510803252 2.720000e-32 150.0
32 TraesCS7A01G145300 chr1B 89.916 119 7 1 1 119 605438248 605438135 9.770000e-32 148.0
33 TraesCS7A01G145300 chr1B 93.204 103 2 2 3 105 62546447 62546544 3.520000e-31 147.0
34 TraesCS7A01G145300 chr3D 95.706 163 7 0 1682 1844 449740282 449740444 3.350000e-66 263.0
35 TraesCS7A01G145300 chr3D 90.756 119 6 2 1 119 588408235 588408122 2.100000e-33 154.0
36 TraesCS7A01G145300 chr1D 94.611 167 7 2 1682 1848 30100583 30100419 1.560000e-64 257.0
37 TraesCS7A01G145300 chr1D 92.381 105 7 1 1 105 302082947 302083050 9.770000e-32 148.0
38 TraesCS7A01G145300 chr6D 92.529 174 12 1 1680 1852 467802434 467802261 9.370000e-62 248.0
39 TraesCS7A01G145300 chr4B 99.010 101 1 0 2676 2776 77297392 77297492 9.640000e-42 182.0
40 TraesCS7A01G145300 chr2B 92.593 108 7 1 1 108 678822460 678822354 2.100000e-33 154.0
41 TraesCS7A01G145300 chrUn 92.381 105 3 1 1 105 69203962 69204061 1.260000e-30 145.0
42 TraesCS7A01G145300 chr4A 89.011 91 5 3 714 804 276909147 276909062 1.660000e-19 108.0
43 TraesCS7A01G145300 chr5D 84.158 101 8 3 2053 2153 86759659 86759567 1.670000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G145300 chr7A 96562077 96566438 4361 False 3556.500 6726 100.00000 1 4362 2 chr7A.!!$F3 4361
1 TraesCS7A01G145300 chr7D 93785271 93788436 3165 False 1113.525 2856 91.68575 193 4362 4 chr7D.!!$F1 4169
2 TraesCS7A01G145300 chr7B 46996879 47000362 3483 False 759.800 1517 92.56160 116 4357 5 chr7B.!!$F1 4241

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 802 0.033504 CGCCAGGGCACGATTACTAT 59.966 55.0 11.42 0.0 42.06 2.12 F
520 864 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.0 0.00 0.0 40.73 4.44 F
1695 2078 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.0 0.00 0.0 0.00 3.62 F
2894 3307 0.464373 TCTGATGGCCGCATTTCCTC 60.464 55.0 0.00 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 2062 0.406750 TCAGGAACGGAGGGAGTACA 59.593 55.000 0.00 0.0 0.00 2.90 R
2488 2879 0.517316 GCCAACATCTGAACGGTCAC 59.483 55.000 0.00 0.0 0.00 3.67 R
3121 3534 0.321122 GAGGCATGGCTCTTATCCCG 60.321 60.000 35.12 0.0 0.00 5.14 R
4227 4643 4.702612 AGTGACTCACATCTACCTACACAG 59.297 45.833 11.80 0.0 36.74 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.872721 TTAAATGAACTAACACATACGGATGTA 57.127 29.630 14.23 0.00 44.82 2.29
31 32 8.958119 AAATGAACTAACACATACGGATGTAT 57.042 30.769 14.23 8.21 44.82 2.29
38 39 9.511272 ACTAACACATACGGATGTATATAGACA 57.489 33.333 23.23 2.07 44.82 3.41
41 42 8.575649 ACACATACGGATGTATATAGACATGA 57.424 34.615 17.40 1.32 44.82 3.07
42 43 8.459635 ACACATACGGATGTATATAGACATGAC 58.540 37.037 17.40 9.20 44.82 3.06
43 44 8.458843 CACATACGGATGTATATAGACATGACA 58.541 37.037 17.40 1.21 44.82 3.58
44 45 9.190317 ACATACGGATGTATATAGACATGACAT 57.810 33.333 17.40 2.21 44.77 3.06
76 77 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
77 78 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
78 79 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
79 80 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
80 81 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
81 82 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
82 83 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
83 84 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
84 85 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
85 86 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
86 87 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
87 88 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
88 89 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
89 90 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
90 91 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
91 92 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
92 93 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
93 94 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
94 95 6.016213 TGCTTCGTATGTAGTCACTTGTTA 57.984 37.500 0.00 0.00 0.00 2.41
95 96 6.448852 TGCTTCGTATGTAGTCACTTGTTAA 58.551 36.000 0.00 0.00 0.00 2.01
96 97 6.924612 TGCTTCGTATGTAGTCACTTGTTAAA 59.075 34.615 0.00 0.00 0.00 1.52
97 98 7.438757 TGCTTCGTATGTAGTCACTTGTTAAAA 59.561 33.333 0.00 0.00 0.00 1.52
98 99 8.440833 GCTTCGTATGTAGTCACTTGTTAAAAT 58.559 33.333 0.00 0.00 0.00 1.82
99 100 9.953825 CTTCGTATGTAGTCACTTGTTAAAATC 57.046 33.333 0.00 0.00 0.00 2.17
100 101 9.701098 TTCGTATGTAGTCACTTGTTAAAATCT 57.299 29.630 0.00 0.00 0.00 2.40
101 102 9.350357 TCGTATGTAGTCACTTGTTAAAATCTC 57.650 33.333 0.00 0.00 0.00 2.75
102 103 9.355215 CGTATGTAGTCACTTGTTAAAATCTCT 57.645 33.333 0.00 0.00 0.00 3.10
105 106 9.877178 ATGTAGTCACTTGTTAAAATCTCTAGG 57.123 33.333 0.00 0.00 0.00 3.02
106 107 9.085645 TGTAGTCACTTGTTAAAATCTCTAGGA 57.914 33.333 0.00 0.00 0.00 2.94
107 108 9.924650 GTAGTCACTTGTTAAAATCTCTAGGAA 57.075 33.333 0.00 0.00 0.00 3.36
108 109 8.834749 AGTCACTTGTTAAAATCTCTAGGAAC 57.165 34.615 0.00 0.00 0.00 3.62
109 110 7.599245 AGTCACTTGTTAAAATCTCTAGGAACG 59.401 37.037 0.00 0.00 0.00 3.95
110 111 6.872020 TCACTTGTTAAAATCTCTAGGAACGG 59.128 38.462 0.00 0.00 0.00 4.44
111 112 6.872020 CACTTGTTAAAATCTCTAGGAACGGA 59.128 38.462 0.00 0.00 0.00 4.69
112 113 7.063544 CACTTGTTAAAATCTCTAGGAACGGAG 59.936 40.741 0.00 0.00 35.26 4.63
113 114 5.974108 TGTTAAAATCTCTAGGAACGGAGG 58.026 41.667 0.00 0.00 34.86 4.30
114 115 5.105064 TGTTAAAATCTCTAGGAACGGAGGG 60.105 44.000 0.00 0.00 34.86 4.30
120 121 2.950975 CTCTAGGAACGGAGGGAGTAAC 59.049 54.545 0.00 0.00 31.74 2.50
131 132 3.181464 GGAGGGAGTAACAACTAGGATGC 60.181 52.174 0.00 0.00 0.00 3.91
135 136 5.128991 AGGGAGTAACAACTAGGATGCTTAC 59.871 44.000 0.00 5.30 0.00 2.34
149 150 3.921119 TGCTTACTGCTCACAAAATGG 57.079 42.857 0.00 0.00 43.37 3.16
290 544 4.042187 AGTGAGTTTAGTCTTTCATGGCCT 59.958 41.667 3.32 0.00 0.00 5.19
294 548 1.213296 TAGTCTTTCATGGCCTCCCC 58.787 55.000 3.32 0.00 0.00 4.81
369 713 3.907894 TTTTTCGTGTCTTGGGCATAC 57.092 42.857 0.00 0.00 0.00 2.39
370 714 1.816074 TTTCGTGTCTTGGGCATACC 58.184 50.000 0.00 0.00 40.81 2.73
371 715 0.981183 TTCGTGTCTTGGGCATACCT 59.019 50.000 0.00 0.00 41.11 3.08
372 716 0.249120 TCGTGTCTTGGGCATACCTG 59.751 55.000 0.00 0.00 41.11 4.00
373 717 0.744414 CGTGTCTTGGGCATACCTGG 60.744 60.000 0.00 0.00 41.11 4.45
374 718 1.032114 GTGTCTTGGGCATACCTGGC 61.032 60.000 0.00 0.00 46.82 4.85
381 725 3.196648 GCATACCTGGCCAAACGG 58.803 61.111 7.01 7.56 0.00 4.44
382 726 2.414785 GCATACCTGGCCAAACGGG 61.415 63.158 7.01 7.12 42.81 5.28
423 767 1.217882 CGACCCATCGTAATCTTGCC 58.782 55.000 0.00 0.00 43.66 4.52
424 768 1.202533 CGACCCATCGTAATCTTGCCT 60.203 52.381 0.00 0.00 43.66 4.75
425 769 2.213499 GACCCATCGTAATCTTGCCTG 58.787 52.381 0.00 0.00 0.00 4.85
426 770 1.134098 ACCCATCGTAATCTTGCCTGG 60.134 52.381 0.00 0.00 0.00 4.45
427 771 0.947244 CCATCGTAATCTTGCCTGGC 59.053 55.000 12.87 12.87 0.00 4.85
428 772 0.947244 CATCGTAATCTTGCCTGGCC 59.053 55.000 17.53 0.00 0.00 5.36
429 773 0.179018 ATCGTAATCTTGCCTGGCCC 60.179 55.000 17.53 0.00 0.00 5.80
430 774 2.180204 CGTAATCTTGCCTGGCCCG 61.180 63.158 17.53 7.11 0.00 6.13
431 775 1.223487 GTAATCTTGCCTGGCCCGA 59.777 57.895 17.53 12.72 0.00 5.14
432 776 1.095807 GTAATCTTGCCTGGCCCGAC 61.096 60.000 17.53 1.97 0.00 4.79
433 777 1.558167 TAATCTTGCCTGGCCCGACA 61.558 55.000 17.53 0.00 0.00 4.35
434 778 3.628646 ATCTTGCCTGGCCCGACAC 62.629 63.158 17.53 0.00 0.00 3.67
455 799 2.895372 CCGCCAGGGCACGATTAC 60.895 66.667 11.42 0.00 42.06 1.89
456 800 2.186903 CGCCAGGGCACGATTACT 59.813 61.111 11.42 0.00 42.06 2.24
457 801 1.440060 CGCCAGGGCACGATTACTA 59.560 57.895 11.42 0.00 42.06 1.82
458 802 0.033504 CGCCAGGGCACGATTACTAT 59.966 55.000 11.42 0.00 42.06 2.12
459 803 1.271379 CGCCAGGGCACGATTACTATA 59.729 52.381 11.42 0.00 42.06 1.31
460 804 2.094182 CGCCAGGGCACGATTACTATAT 60.094 50.000 11.42 0.00 42.06 0.86
461 805 3.262420 GCCAGGGCACGATTACTATATG 58.738 50.000 5.20 0.00 41.49 1.78
462 806 3.306780 GCCAGGGCACGATTACTATATGT 60.307 47.826 5.20 0.00 41.49 2.29
463 807 4.245660 CCAGGGCACGATTACTATATGTG 58.754 47.826 0.00 0.00 0.00 3.21
468 812 4.886009 CACGATTACTATATGTGCCGTG 57.114 45.455 0.00 0.00 39.01 4.94
469 813 3.121279 CACGATTACTATATGTGCCGTGC 59.879 47.826 0.00 0.00 38.77 5.34
470 814 2.666508 CGATTACTATATGTGCCGTGCC 59.333 50.000 0.00 0.00 0.00 5.01
471 815 2.143008 TTACTATATGTGCCGTGCCG 57.857 50.000 0.00 0.00 0.00 5.69
515 859 2.983791 GGCACGGCCCAGTTAGTA 59.016 61.111 0.00 0.00 44.06 1.82
516 860 1.297364 GGCACGGCCCAGTTAGTAA 59.703 57.895 0.00 0.00 44.06 2.24
517 861 0.321830 GGCACGGCCCAGTTAGTAAA 60.322 55.000 0.00 0.00 44.06 2.01
518 862 0.800631 GCACGGCCCAGTTAGTAAAC 59.199 55.000 0.00 0.00 35.72 2.01
519 863 1.073177 CACGGCCCAGTTAGTAAACG 58.927 55.000 0.00 0.00 40.73 3.60
520 864 0.037046 ACGGCCCAGTTAGTAAACGG 60.037 55.000 0.00 0.00 40.73 4.44
521 865 0.741927 CGGCCCAGTTAGTAAACGGG 60.742 60.000 11.93 11.93 46.88 5.28
523 867 3.164026 CCCAGTTAGTAAACGGGCC 57.836 57.895 0.00 0.00 46.22 5.80
524 868 0.741927 CCCAGTTAGTAAACGGGCCG 60.742 60.000 27.06 27.06 46.22 6.13
525 869 0.741927 CCAGTTAGTAAACGGGCCGG 60.742 60.000 31.78 12.53 42.77 6.13
526 870 1.078918 AGTTAGTAAACGGGCCGGC 60.079 57.895 31.78 21.18 40.73 6.13
527 871 1.375780 GTTAGTAAACGGGCCGGCA 60.376 57.895 31.78 11.85 0.00 5.69
528 872 1.375780 TTAGTAAACGGGCCGGCAC 60.376 57.895 31.78 26.77 0.00 5.01
529 873 2.109517 TTAGTAAACGGGCCGGCACA 62.110 55.000 31.47 5.74 0.00 4.57
530 874 1.901654 TAGTAAACGGGCCGGCACAT 61.902 55.000 31.47 12.15 0.00 3.21
531 875 2.034376 TAAACGGGCCGGCACATT 59.966 55.556 31.47 24.62 0.00 2.71
532 876 2.336478 TAAACGGGCCGGCACATTG 61.336 57.895 31.47 15.76 0.00 2.82
543 887 2.263153 GCACATTGGCCCGTTTAGT 58.737 52.632 0.00 0.00 0.00 2.24
544 888 1.455248 GCACATTGGCCCGTTTAGTA 58.545 50.000 0.00 0.00 0.00 1.82
545 889 1.131693 GCACATTGGCCCGTTTAGTAC 59.868 52.381 0.00 0.00 0.00 2.73
553 897 4.190350 CGTTTAGTACGGTGGGCC 57.810 61.111 0.00 0.00 46.42 5.80
564 908 2.499214 GGTGGGCCGCATATTTTCA 58.501 52.632 20.39 0.00 0.00 2.69
565 909 0.385390 GGTGGGCCGCATATTTTCAG 59.615 55.000 20.39 0.00 0.00 3.02
566 910 1.102978 GTGGGCCGCATATTTTCAGT 58.897 50.000 13.30 0.00 0.00 3.41
567 911 1.065551 GTGGGCCGCATATTTTCAGTC 59.934 52.381 13.30 0.00 0.00 3.51
568 912 1.064758 TGGGCCGCATATTTTCAGTCT 60.065 47.619 0.00 0.00 0.00 3.24
569 913 2.171659 TGGGCCGCATATTTTCAGTCTA 59.828 45.455 0.00 0.00 0.00 2.59
570 914 3.181445 TGGGCCGCATATTTTCAGTCTAT 60.181 43.478 0.00 0.00 0.00 1.98
571 915 3.821033 GGGCCGCATATTTTCAGTCTATT 59.179 43.478 0.00 0.00 0.00 1.73
572 916 5.001232 GGGCCGCATATTTTCAGTCTATTA 58.999 41.667 0.00 0.00 0.00 0.98
573 917 5.648092 GGGCCGCATATTTTCAGTCTATTAT 59.352 40.000 0.00 0.00 0.00 1.28
574 918 6.183360 GGGCCGCATATTTTCAGTCTATTATC 60.183 42.308 0.00 0.00 0.00 1.75
575 919 6.595716 GGCCGCATATTTTCAGTCTATTATCT 59.404 38.462 0.00 0.00 0.00 1.98
576 920 7.413438 GGCCGCATATTTTCAGTCTATTATCTG 60.413 40.741 0.00 0.00 0.00 2.90
577 921 7.331934 GCCGCATATTTTCAGTCTATTATCTGA 59.668 37.037 0.00 0.00 38.66 3.27
578 922 8.651588 CCGCATATTTTCAGTCTATTATCTGAC 58.348 37.037 0.00 0.00 39.87 3.51
579 923 8.368857 CGCATATTTTCAGTCTATTATCTGACG 58.631 37.037 0.00 0.00 39.87 4.35
580 924 8.165428 GCATATTTTCAGTCTATTATCTGACGC 58.835 37.037 0.00 0.00 39.87 5.19
581 925 9.196552 CATATTTTCAGTCTATTATCTGACGCA 57.803 33.333 0.00 0.00 39.87 5.24
582 926 6.887376 TTTTCAGTCTATTATCTGACGCAC 57.113 37.500 0.00 0.00 39.87 5.34
583 927 5.836821 TTCAGTCTATTATCTGACGCACT 57.163 39.130 0.00 0.00 39.87 4.40
584 928 5.175090 TCAGTCTATTATCTGACGCACTG 57.825 43.478 0.00 0.00 38.16 3.66
585 929 4.881850 TCAGTCTATTATCTGACGCACTGA 59.118 41.667 0.00 0.00 37.32 3.41
586 930 5.008118 TCAGTCTATTATCTGACGCACTGAG 59.992 44.000 0.00 0.00 35.29 3.35
587 931 3.978217 GTCTATTATCTGACGCACTGAGC 59.022 47.826 0.00 0.00 40.87 4.26
588 932 2.967599 ATTATCTGACGCACTGAGCA 57.032 45.000 0.00 0.00 46.13 4.26
589 933 2.967599 TTATCTGACGCACTGAGCAT 57.032 45.000 0.00 0.00 46.13 3.79
590 934 2.967599 TATCTGACGCACTGAGCATT 57.032 45.000 0.00 0.00 46.13 3.56
591 935 2.105006 ATCTGACGCACTGAGCATTT 57.895 45.000 0.00 0.00 46.13 2.32
592 936 1.882912 TCTGACGCACTGAGCATTTT 58.117 45.000 0.00 0.00 46.13 1.82
593 937 2.221169 TCTGACGCACTGAGCATTTTT 58.779 42.857 0.00 0.00 46.13 1.94
616 960 8.980143 TTTTAGCCTATTTTTACATGTTGAGC 57.020 30.769 2.30 0.00 0.00 4.26
617 961 5.582689 AGCCTATTTTTACATGTTGAGCC 57.417 39.130 2.30 0.00 0.00 4.70
618 962 5.016173 AGCCTATTTTTACATGTTGAGCCA 58.984 37.500 2.30 0.00 0.00 4.75
619 963 5.658190 AGCCTATTTTTACATGTTGAGCCAT 59.342 36.000 2.30 0.00 0.00 4.40
620 964 6.833416 AGCCTATTTTTACATGTTGAGCCATA 59.167 34.615 2.30 0.00 0.00 2.74
621 965 7.506938 AGCCTATTTTTACATGTTGAGCCATAT 59.493 33.333 2.30 0.00 0.00 1.78
622 966 8.792633 GCCTATTTTTACATGTTGAGCCATATA 58.207 33.333 2.30 0.00 0.00 0.86
662 1006 0.524414 AAAACTTAATCGGGCCGTGC 59.476 50.000 27.32 0.00 0.00 5.34
747 1091 3.440415 GCCCGTTTAGCCAGTGCC 61.440 66.667 0.00 0.00 38.69 5.01
748 1092 3.124921 CCCGTTTAGCCAGTGCCG 61.125 66.667 0.00 0.00 38.69 5.69
749 1093 2.358247 CCGTTTAGCCAGTGCCGT 60.358 61.111 0.00 0.00 38.69 5.68
750 1094 2.677003 CCGTTTAGCCAGTGCCGTG 61.677 63.158 0.00 0.00 38.69 4.94
751 1095 2.561373 GTTTAGCCAGTGCCGTGC 59.439 61.111 0.00 0.00 38.69 5.34
752 1096 2.671619 TTTAGCCAGTGCCGTGCC 60.672 61.111 0.00 0.00 38.69 5.01
804 1148 2.664402 CCCATTTGGCCAGCTATAGT 57.336 50.000 5.11 0.00 0.00 2.12
805 1149 2.508526 CCCATTTGGCCAGCTATAGTC 58.491 52.381 5.11 0.00 0.00 2.59
806 1150 2.107204 CCCATTTGGCCAGCTATAGTCT 59.893 50.000 5.11 0.00 0.00 3.24
807 1151 3.435601 CCCATTTGGCCAGCTATAGTCTT 60.436 47.826 5.11 0.00 0.00 3.01
808 1152 3.567164 CCATTTGGCCAGCTATAGTCTTG 59.433 47.826 5.11 0.00 0.00 3.02
809 1153 3.281727 TTTGGCCAGCTATAGTCTTGG 57.718 47.619 5.11 12.85 0.00 3.61
810 1154 1.131638 TGGCCAGCTATAGTCTTGGG 58.868 55.000 0.00 8.33 0.00 4.12
811 1155 1.343985 TGGCCAGCTATAGTCTTGGGA 60.344 52.381 0.00 0.00 0.00 4.37
824 1168 0.394899 CTTGGGATTCCAGGCACCTC 60.395 60.000 4.80 0.00 45.04 3.85
825 1169 0.846427 TTGGGATTCCAGGCACCTCT 60.846 55.000 4.80 0.00 45.04 3.69
826 1170 1.225704 GGGATTCCAGGCACCTCTG 59.774 63.158 4.80 0.00 34.70 3.35
859 1203 1.379044 AATTCCTGCAAGCCCGGAG 60.379 57.895 0.73 0.00 0.00 4.63
907 1257 0.760945 ACCCCTATTCCTGCCGAGAG 60.761 60.000 0.00 0.00 0.00 3.20
908 1258 1.369321 CCCTATTCCTGCCGAGAGC 59.631 63.158 0.00 0.00 44.14 4.09
955 1305 2.957006 TCCTTCTATCCGGAACAGTAGC 59.043 50.000 9.01 0.00 0.00 3.58
956 1306 2.036089 CCTTCTATCCGGAACAGTAGCC 59.964 54.545 9.01 0.00 0.00 3.93
957 1307 1.315690 TCTATCCGGAACAGTAGCCG 58.684 55.000 9.01 7.62 46.80 5.52
958 1308 0.318784 CTATCCGGAACAGTAGCCGC 60.319 60.000 9.01 0.00 45.93 6.53
1023 1377 3.046087 CCGCCTCACAGCACACAG 61.046 66.667 0.00 0.00 0.00 3.66
1255 1628 0.679505 TACACACACAGCTGGGACTC 59.320 55.000 26.06 0.00 0.00 3.36
1404 1777 1.389609 TTCTCCATCCGTACTCGCCC 61.390 60.000 0.00 0.00 35.54 6.13
1428 1801 3.100671 AGGTCTCCTCCATCACTACAAC 58.899 50.000 0.00 0.00 0.00 3.32
1437 1810 3.259625 TCCATCACTACAACCATTCGACA 59.740 43.478 0.00 0.00 0.00 4.35
1442 1815 3.184379 CACTACAACCATTCGACACTGTG 59.816 47.826 6.19 6.19 0.00 3.66
1463 1836 6.327154 TGTGTTCCACTCACTATATTGTACG 58.673 40.000 0.00 0.00 36.83 3.67
1464 1837 6.071784 TGTGTTCCACTCACTATATTGTACGT 60.072 38.462 0.00 0.00 36.83 3.57
1465 1838 7.121020 TGTGTTCCACTCACTATATTGTACGTA 59.879 37.037 0.00 0.00 36.83 3.57
1466 1839 7.430502 GTGTTCCACTCACTATATTGTACGTAC 59.569 40.741 18.90 18.90 33.59 3.67
1467 1840 6.291067 TCCACTCACTATATTGTACGTACG 57.709 41.667 20.18 15.01 0.00 3.67
1468 1841 5.817296 TCCACTCACTATATTGTACGTACGT 59.183 40.000 25.98 25.98 0.00 3.57
1469 1842 6.983890 TCCACTCACTATATTGTACGTACGTA 59.016 38.462 23.60 23.60 0.00 3.57
1498 1871 4.662468 TTTGAGTCCAGCTCTAGCATAG 57.338 45.455 4.54 0.00 44.41 2.23
1518 1891 6.148480 GCATAGGTTTGATAGACACATGGATC 59.852 42.308 0.00 0.00 0.00 3.36
1627 2001 0.461548 TGACACCGCTGGATCAGATC 59.538 55.000 1.18 1.18 32.44 2.75
1629 2003 1.300465 CACCGCTGGATCAGATCGG 60.300 63.158 4.23 5.59 40.89 4.18
1634 2008 0.972134 GCTGGATCAGATCGGGATGA 59.028 55.000 4.23 0.00 32.44 2.92
1636 2010 2.677325 GCTGGATCAGATCGGGATGATG 60.677 54.545 4.23 0.00 37.47 3.07
1637 2011 2.830321 CTGGATCAGATCGGGATGATGA 59.170 50.000 4.23 0.00 37.47 2.92
1639 2013 2.830923 GGATCAGATCGGGATGATGAGT 59.169 50.000 4.23 0.00 37.47 3.41
1679 2062 5.509670 GGCAATCAGTTTTTCCTTGTAGCTT 60.510 40.000 0.00 0.00 0.00 3.74
1685 2068 6.482308 TCAGTTTTTCCTTGTAGCTTGTACTC 59.518 38.462 0.00 0.00 0.00 2.59
1687 2070 3.975168 TTCCTTGTAGCTTGTACTCCC 57.025 47.619 0.00 0.00 0.00 4.30
1691 2074 1.471119 TGTAGCTTGTACTCCCTCCG 58.529 55.000 0.00 0.00 0.00 4.63
1692 2075 1.272313 TGTAGCTTGTACTCCCTCCGT 60.272 52.381 0.00 0.00 0.00 4.69
1694 2077 0.896226 AGCTTGTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
1695 2078 0.108281 GCTTGTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
1697 2080 1.204941 CTTGTACTCCCTCCGTTCCTG 59.795 57.143 0.00 0.00 0.00 3.86
1699 2082 1.203087 TGTACTCCCTCCGTTCCTGAA 60.203 52.381 0.00 0.00 0.00 3.02
1701 2084 2.544844 ACTCCCTCCGTTCCTGAATA 57.455 50.000 0.00 0.00 0.00 1.75
1702 2085 3.047695 ACTCCCTCCGTTCCTGAATAT 57.952 47.619 0.00 0.00 0.00 1.28
1703 2086 4.194678 ACTCCCTCCGTTCCTGAATATA 57.805 45.455 0.00 0.00 0.00 0.86
1704 2087 4.553678 ACTCCCTCCGTTCCTGAATATAA 58.446 43.478 0.00 0.00 0.00 0.98
1705 2088 4.589374 ACTCCCTCCGTTCCTGAATATAAG 59.411 45.833 0.00 0.00 0.00 1.73
1707 2090 4.587684 TCCCTCCGTTCCTGAATATAAGTC 59.412 45.833 0.00 0.00 0.00 3.01
1708 2091 4.589374 CCCTCCGTTCCTGAATATAAGTCT 59.411 45.833 0.00 0.00 0.00 3.24
1709 2092 5.070580 CCCTCCGTTCCTGAATATAAGTCTT 59.929 44.000 0.00 0.00 0.00 3.01
1710 2093 6.408206 CCCTCCGTTCCTGAATATAAGTCTTT 60.408 42.308 0.00 0.00 0.00 2.52
1711 2094 7.048512 CCTCCGTTCCTGAATATAAGTCTTTT 58.951 38.462 0.00 0.00 0.00 2.27
1712 2095 7.553044 CCTCCGTTCCTGAATATAAGTCTTTTT 59.447 37.037 0.00 0.00 0.00 1.94
1713 2096 9.595823 CTCCGTTCCTGAATATAAGTCTTTTTA 57.404 33.333 0.00 0.00 0.00 1.52
1714 2097 9.595823 TCCGTTCCTGAATATAAGTCTTTTTAG 57.404 33.333 0.00 0.00 0.00 1.85
1715 2098 9.595823 CCGTTCCTGAATATAAGTCTTTTTAGA 57.404 33.333 0.00 0.00 0.00 2.10
1743 2126 8.411991 TTTGTATATGGACTACATACGGATGA 57.588 34.615 16.36 0.00 44.41 2.92
1746 2129 9.689501 TGTATATGGACTACATACGGATGAATA 57.310 33.333 16.36 0.00 44.41 1.75
1751 2134 8.277490 TGGACTACATACGGATGAATATAGAC 57.723 38.462 16.36 5.82 36.48 2.59
1752 2135 7.886446 TGGACTACATACGGATGAATATAGACA 59.114 37.037 16.36 7.63 36.48 3.41
1784 2167 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1787 2170 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
1788 2171 5.578005 AGATTCACTCATTTTGCTCCATG 57.422 39.130 0.00 0.00 0.00 3.66
1789 2172 5.014858 AGATTCACTCATTTTGCTCCATGT 58.985 37.500 0.00 0.00 0.00 3.21
1790 2173 4.508461 TTCACTCATTTTGCTCCATGTG 57.492 40.909 0.00 0.00 0.00 3.21
1791 2174 3.489355 TCACTCATTTTGCTCCATGTGT 58.511 40.909 0.00 0.00 0.00 3.72
1792 2175 4.650734 TCACTCATTTTGCTCCATGTGTA 58.349 39.130 0.00 0.00 0.00 2.90
1793 2176 4.696877 TCACTCATTTTGCTCCATGTGTAG 59.303 41.667 0.00 0.00 0.00 2.74
1794 2177 4.456911 CACTCATTTTGCTCCATGTGTAGT 59.543 41.667 0.00 0.00 0.00 2.73
1795 2178 4.697352 ACTCATTTTGCTCCATGTGTAGTC 59.303 41.667 0.00 0.00 0.00 2.59
1796 2179 4.009675 TCATTTTGCTCCATGTGTAGTCC 58.990 43.478 0.00 0.00 0.00 3.85
1797 2180 3.500448 TTTTGCTCCATGTGTAGTCCA 57.500 42.857 0.00 0.00 0.00 4.02
1798 2181 3.719268 TTTGCTCCATGTGTAGTCCAT 57.281 42.857 0.00 0.00 0.00 3.41
1799 2182 4.835284 TTTGCTCCATGTGTAGTCCATA 57.165 40.909 0.00 0.00 0.00 2.74
1800 2183 5.372343 TTTGCTCCATGTGTAGTCCATAT 57.628 39.130 0.00 0.00 0.00 1.78
1801 2184 5.372343 TTGCTCCATGTGTAGTCCATATT 57.628 39.130 0.00 0.00 0.00 1.28
1802 2185 6.493189 TTGCTCCATGTGTAGTCCATATTA 57.507 37.500 0.00 0.00 0.00 0.98
1803 2186 6.101650 TGCTCCATGTGTAGTCCATATTAG 57.898 41.667 0.00 0.00 0.00 1.73
1804 2187 5.838521 TGCTCCATGTGTAGTCCATATTAGA 59.161 40.000 0.00 0.00 0.00 2.10
1805 2188 6.326323 TGCTCCATGTGTAGTCCATATTAGAA 59.674 38.462 0.00 0.00 0.00 2.10
1806 2189 7.016563 TGCTCCATGTGTAGTCCATATTAGAAT 59.983 37.037 0.00 0.00 0.00 2.40
1807 2190 7.547370 GCTCCATGTGTAGTCCATATTAGAATC 59.453 40.741 0.00 0.00 0.00 2.52
1808 2191 8.727100 TCCATGTGTAGTCCATATTAGAATCT 57.273 34.615 0.00 0.00 0.00 2.40
1809 2192 8.807118 TCCATGTGTAGTCCATATTAGAATCTC 58.193 37.037 0.00 0.00 0.00 2.75
1810 2193 8.811017 CCATGTGTAGTCCATATTAGAATCTCT 58.189 37.037 0.00 0.00 0.00 3.10
1839 2222 6.379579 AGACTTATAATTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1840 2223 6.494146 AGACTTATAATTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1841 2224 6.141790 ACTTATAATTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1842 2225 7.300658 ACTTATAATTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1879 2262 4.590400 TTGTTTTTGTTGATGTTTGGCG 57.410 36.364 0.00 0.00 0.00 5.69
1881 2264 3.997021 TGTTTTTGTTGATGTTTGGCGTT 59.003 34.783 0.00 0.00 0.00 4.84
1883 2266 4.590400 TTTTGTTGATGTTTGGCGTTTG 57.410 36.364 0.00 0.00 0.00 2.93
1884 2267 3.510388 TTGTTGATGTTTGGCGTTTGA 57.490 38.095 0.00 0.00 0.00 2.69
1885 2268 3.724508 TGTTGATGTTTGGCGTTTGAT 57.275 38.095 0.00 0.00 0.00 2.57
1886 2269 4.837896 TGTTGATGTTTGGCGTTTGATA 57.162 36.364 0.00 0.00 0.00 2.15
1888 2271 5.218885 TGTTGATGTTTGGCGTTTGATAAG 58.781 37.500 0.00 0.00 0.00 1.73
1889 2272 5.219633 GTTGATGTTTGGCGTTTGATAAGT 58.780 37.500 0.00 0.00 0.00 2.24
1890 2273 6.017026 TGTTGATGTTTGGCGTTTGATAAGTA 60.017 34.615 0.00 0.00 0.00 2.24
1891 2274 6.751514 TGATGTTTGGCGTTTGATAAGTAT 57.248 33.333 0.00 0.00 0.00 2.12
1892 2275 7.851387 TGATGTTTGGCGTTTGATAAGTATA 57.149 32.000 0.00 0.00 0.00 1.47
1980 2363 0.820871 GAGGTACTGCTGGACTGAGG 59.179 60.000 5.87 0.00 41.55 3.86
2125 2509 1.063616 CTTGATTCGGATGCTGCACAG 59.936 52.381 3.57 0.00 0.00 3.66
2145 2529 1.483415 GCGACTTATCCCTGGGTTACA 59.517 52.381 13.56 0.00 0.00 2.41
2243 2628 2.297033 GCCTTCCTGCTTTGTTTCATCA 59.703 45.455 0.00 0.00 0.00 3.07
2264 2649 9.612066 TCATCATCAACTGTTTGCTATGTTATA 57.388 29.630 0.00 0.00 32.17 0.98
2426 2817 8.964476 TCTACATCAATTTTCAGGTAGGATTC 57.036 34.615 0.00 0.00 31.51 2.52
2432 2823 6.664816 TCAATTTTCAGGTAGGATTCTTGCAT 59.335 34.615 0.00 0.00 0.00 3.96
2449 2840 5.581126 TTGCATAGTCCCAATAAAGCAAG 57.419 39.130 0.00 0.00 36.01 4.01
2450 2841 3.953612 TGCATAGTCCCAATAAAGCAAGG 59.046 43.478 0.00 0.00 0.00 3.61
2471 2862 6.515272 AGGGATATTGCTTTACACAAACTG 57.485 37.500 0.00 0.00 0.00 3.16
2473 2864 6.719370 AGGGATATTGCTTTACACAAACTGAA 59.281 34.615 0.00 0.00 0.00 3.02
2538 2929 6.177610 TCCACATTAAACCACCTAAAGCTAG 58.822 40.000 0.00 0.00 0.00 3.42
2622 3032 6.843779 GGAAAACGTTAAAATTCAACATGTGC 59.156 34.615 0.00 0.00 0.00 4.57
2864 3277 5.715279 TGAGCTTACAGTCATTACAGTACCT 59.285 40.000 0.00 0.00 28.38 3.08
2884 3297 4.042187 ACCTACTGGAATTATCTGATGGCC 59.958 45.833 0.00 0.00 37.04 5.36
2894 3307 0.464373 TCTGATGGCCGCATTTCCTC 60.464 55.000 0.00 0.00 0.00 3.71
2914 3327 2.355756 TCGCAGAGAAAAATATGGCAGC 59.644 45.455 0.00 0.00 0.00 5.25
2965 3378 1.384191 GGCATTCCAAGGACCCTGT 59.616 57.895 0.00 0.00 0.00 4.00
3121 3534 2.143925 GATTATGTACGAGCAAGGGCC 58.856 52.381 0.00 0.00 42.56 5.80
3190 3603 6.429692 CACTGTTGGGTTGTCTAAATGATGTA 59.570 38.462 0.00 0.00 0.00 2.29
3331 3744 8.408043 AAAACATGATACCTTCTGAATTCACA 57.592 30.769 3.38 0.00 0.00 3.58
3404 3818 3.685139 ACCATGCTATCGTAGGATTGG 57.315 47.619 10.83 10.83 34.38 3.16
3438 3852 3.051803 TGGAGAGACCAGGAGGATTATGT 60.052 47.826 0.00 0.00 44.64 2.29
3445 3859 3.910627 ACCAGGAGGATTATGTGATACCC 59.089 47.826 0.00 0.00 38.69 3.69
3495 3909 3.059325 GCTGCATCATATCGAAACCTGAC 60.059 47.826 0.00 0.00 0.00 3.51
4213 4629 4.952957 TCTGTAAACCTGAGGAGAGATGAG 59.047 45.833 4.99 0.00 0.00 2.90
4227 4643 6.052360 GGAGAGATGAGGGTTTATGAGTTTC 58.948 44.000 0.00 0.00 0.00 2.78
4245 4661 6.071896 TGAGTTTCTGTGTAGGTAGATGTGAG 60.072 42.308 0.00 0.00 0.00 3.51
4353 4769 3.384168 TGGATGTAGGAGGTGCATTAGT 58.616 45.455 0.00 0.00 30.44 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.221933 ACATCCGTATGTGTTAGTTCATTTAAA 57.778 29.630 0.00 0.00 44.79 1.52
4 5 8.780846 ACATCCGTATGTGTTAGTTCATTTAA 57.219 30.769 0.00 0.00 44.79 1.52
6 7 8.958119 ATACATCCGTATGTGTTAGTTCATTT 57.042 30.769 3.56 0.00 45.99 2.32
12 13 9.511272 TGTCTATATACATCCGTATGTGTTAGT 57.489 33.333 3.56 0.00 45.99 2.24
15 16 9.020731 TCATGTCTATATACATCCGTATGTGTT 57.979 33.333 3.56 0.00 45.99 3.32
16 17 8.459635 GTCATGTCTATATACATCCGTATGTGT 58.540 37.037 3.56 0.00 45.99 3.72
17 18 8.458843 TGTCATGTCTATATACATCCGTATGTG 58.541 37.037 3.56 0.00 45.99 3.21
53 54 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
54 55 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
55 56 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
56 57 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
57 58 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
58 59 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
59 60 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
60 61 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
61 62 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
62 63 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
63 64 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
64 65 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
65 66 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
66 67 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
67 68 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
68 69 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
69 70 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
70 71 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
71 72 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
72 73 6.939551 TTAACAAGTGACTACATACGAAGC 57.060 37.500 0.00 0.00 0.00 3.86
73 74 9.953825 GATTTTAACAAGTGACTACATACGAAG 57.046 33.333 0.00 0.00 0.00 3.79
74 75 9.701098 AGATTTTAACAAGTGACTACATACGAA 57.299 29.630 0.00 0.00 0.00 3.85
75 76 9.350357 GAGATTTTAACAAGTGACTACATACGA 57.650 33.333 0.00 0.00 0.00 3.43
76 77 9.355215 AGAGATTTTAACAAGTGACTACATACG 57.645 33.333 0.00 0.00 0.00 3.06
79 80 9.877178 CCTAGAGATTTTAACAAGTGACTACAT 57.123 33.333 0.00 0.00 0.00 2.29
80 81 9.085645 TCCTAGAGATTTTAACAAGTGACTACA 57.914 33.333 0.00 0.00 0.00 2.74
81 82 9.924650 TTCCTAGAGATTTTAACAAGTGACTAC 57.075 33.333 0.00 0.00 0.00 2.73
82 83 9.924650 GTTCCTAGAGATTTTAACAAGTGACTA 57.075 33.333 0.00 0.00 0.00 2.59
83 84 7.599245 CGTTCCTAGAGATTTTAACAAGTGACT 59.401 37.037 0.00 0.00 0.00 3.41
84 85 7.148623 CCGTTCCTAGAGATTTTAACAAGTGAC 60.149 40.741 0.00 0.00 0.00 3.67
85 86 6.872020 CCGTTCCTAGAGATTTTAACAAGTGA 59.128 38.462 0.00 0.00 0.00 3.41
86 87 6.872020 TCCGTTCCTAGAGATTTTAACAAGTG 59.128 38.462 0.00 0.00 0.00 3.16
87 88 7.001099 TCCGTTCCTAGAGATTTTAACAAGT 57.999 36.000 0.00 0.00 0.00 3.16
88 89 6.535508 CCTCCGTTCCTAGAGATTTTAACAAG 59.464 42.308 0.00 0.00 31.43 3.16
89 90 6.403878 CCTCCGTTCCTAGAGATTTTAACAA 58.596 40.000 0.00 0.00 31.43 2.83
90 91 5.105064 CCCTCCGTTCCTAGAGATTTTAACA 60.105 44.000 0.00 0.00 31.43 2.41
91 92 5.128335 TCCCTCCGTTCCTAGAGATTTTAAC 59.872 44.000 0.00 0.00 31.43 2.01
92 93 5.274822 TCCCTCCGTTCCTAGAGATTTTAA 58.725 41.667 0.00 0.00 31.43 1.52
93 94 4.875389 TCCCTCCGTTCCTAGAGATTTTA 58.125 43.478 0.00 0.00 31.43 1.52
94 95 3.707102 CTCCCTCCGTTCCTAGAGATTTT 59.293 47.826 0.00 0.00 31.43 1.82
95 96 3.301274 CTCCCTCCGTTCCTAGAGATTT 58.699 50.000 0.00 0.00 31.43 2.17
96 97 2.245287 ACTCCCTCCGTTCCTAGAGATT 59.755 50.000 0.00 0.00 31.43 2.40
97 98 1.854280 ACTCCCTCCGTTCCTAGAGAT 59.146 52.381 0.00 0.00 31.43 2.75
98 99 1.296984 ACTCCCTCCGTTCCTAGAGA 58.703 55.000 0.00 0.00 31.43 3.10
99 100 2.950975 GTTACTCCCTCCGTTCCTAGAG 59.049 54.545 0.00 0.00 0.00 2.43
100 101 2.309755 TGTTACTCCCTCCGTTCCTAGA 59.690 50.000 0.00 0.00 0.00 2.43
101 102 2.731572 TGTTACTCCCTCCGTTCCTAG 58.268 52.381 0.00 0.00 0.00 3.02
102 103 2.827921 GTTGTTACTCCCTCCGTTCCTA 59.172 50.000 0.00 0.00 0.00 2.94
103 104 1.622312 GTTGTTACTCCCTCCGTTCCT 59.378 52.381 0.00 0.00 0.00 3.36
104 105 1.622312 AGTTGTTACTCCCTCCGTTCC 59.378 52.381 0.00 0.00 0.00 3.62
105 106 3.119209 CCTAGTTGTTACTCCCTCCGTTC 60.119 52.174 0.00 0.00 35.78 3.95
106 107 2.830321 CCTAGTTGTTACTCCCTCCGTT 59.170 50.000 0.00 0.00 35.78 4.44
107 108 2.042162 TCCTAGTTGTTACTCCCTCCGT 59.958 50.000 0.00 0.00 35.78 4.69
108 109 2.731572 TCCTAGTTGTTACTCCCTCCG 58.268 52.381 0.00 0.00 35.78 4.63
109 110 3.181464 GCATCCTAGTTGTTACTCCCTCC 60.181 52.174 0.00 0.00 35.78 4.30
110 111 3.707102 AGCATCCTAGTTGTTACTCCCTC 59.293 47.826 0.00 0.00 35.78 4.30
111 112 3.725634 AGCATCCTAGTTGTTACTCCCT 58.274 45.455 0.00 0.00 35.78 4.20
112 113 4.489306 AAGCATCCTAGTTGTTACTCCC 57.511 45.455 0.00 0.00 35.78 4.30
113 114 6.043411 CAGTAAGCATCCTAGTTGTTACTCC 58.957 44.000 11.02 0.00 35.78 3.85
114 115 5.520649 GCAGTAAGCATCCTAGTTGTTACTC 59.479 44.000 11.02 6.81 44.79 2.59
131 132 5.048504 ACATGACCATTTTGTGAGCAGTAAG 60.049 40.000 0.00 0.00 0.00 2.34
135 136 3.928727 ACATGACCATTTTGTGAGCAG 57.071 42.857 0.00 0.00 0.00 4.24
211 435 9.883142 TTGGTCATTTGAGTTGTTTAAAAGATT 57.117 25.926 0.00 0.00 0.00 2.40
212 436 9.883142 TTTGGTCATTTGAGTTGTTTAAAAGAT 57.117 25.926 0.00 0.00 0.00 2.40
213 437 9.883142 ATTTGGTCATTTGAGTTGTTTAAAAGA 57.117 25.926 0.00 0.00 0.00 2.52
264 489 6.599638 GGCCATGAAAGACTAAACTCACTATT 59.400 38.462 0.00 0.00 0.00 1.73
294 548 3.314541 AGTAGACCACGCCTACAAAAG 57.685 47.619 0.00 0.00 39.06 2.27
353 697 0.249120 CAGGTATGCCCAAGACACGA 59.751 55.000 0.00 0.00 34.66 4.35
364 708 2.414785 CCCGTTTGGCCAGGTATGC 61.415 63.158 5.11 0.00 0.00 3.14
365 709 3.918544 CCCGTTTGGCCAGGTATG 58.081 61.111 5.11 0.95 0.00 2.39
405 749 2.213499 CAGGCAAGATTACGATGGGTC 58.787 52.381 0.00 0.00 0.00 4.46
406 750 1.134098 CCAGGCAAGATTACGATGGGT 60.134 52.381 0.00 0.00 0.00 4.51
407 751 1.597742 CCAGGCAAGATTACGATGGG 58.402 55.000 0.00 0.00 0.00 4.00
408 752 0.947244 GCCAGGCAAGATTACGATGG 59.053 55.000 6.55 0.00 0.00 3.51
409 753 0.947244 GGCCAGGCAAGATTACGATG 59.053 55.000 15.19 0.00 0.00 3.84
410 754 0.179018 GGGCCAGGCAAGATTACGAT 60.179 55.000 15.19 0.00 0.00 3.73
411 755 1.223487 GGGCCAGGCAAGATTACGA 59.777 57.895 15.19 0.00 0.00 3.43
412 756 2.180204 CGGGCCAGGCAAGATTACG 61.180 63.158 15.19 1.81 0.00 3.18
413 757 1.095807 GTCGGGCCAGGCAAGATTAC 61.096 60.000 15.19 0.00 0.00 1.89
414 758 1.223487 GTCGGGCCAGGCAAGATTA 59.777 57.895 15.19 0.00 0.00 1.75
415 759 2.044946 GTCGGGCCAGGCAAGATT 60.045 61.111 15.19 0.00 0.00 2.40
416 760 3.329889 TGTCGGGCCAGGCAAGAT 61.330 61.111 15.19 0.00 0.00 2.40
417 761 4.329545 GTGTCGGGCCAGGCAAGA 62.330 66.667 13.09 9.01 0.00 3.02
438 782 2.023414 TAGTAATCGTGCCCTGGCGG 62.023 60.000 3.32 0.00 45.51 6.13
439 783 0.033504 ATAGTAATCGTGCCCTGGCG 59.966 55.000 3.32 0.00 45.51 5.69
440 784 3.262420 CATATAGTAATCGTGCCCTGGC 58.738 50.000 0.00 0.00 42.35 4.85
441 785 4.245660 CACATATAGTAATCGTGCCCTGG 58.754 47.826 0.00 0.00 0.00 4.45
442 786 3.679980 GCACATATAGTAATCGTGCCCTG 59.320 47.826 0.00 0.00 45.57 4.45
443 787 3.926616 GCACATATAGTAATCGTGCCCT 58.073 45.455 0.00 0.00 45.57 5.19
447 791 3.121279 GCACGGCACATATAGTAATCGTG 59.879 47.826 0.00 0.00 43.43 4.35
448 792 3.314553 GCACGGCACATATAGTAATCGT 58.685 45.455 0.00 0.00 32.33 3.73
449 793 2.666508 GGCACGGCACATATAGTAATCG 59.333 50.000 0.00 0.00 0.00 3.34
499 843 0.800631 GTTTACTAACTGGGCCGTGC 59.199 55.000 0.00 0.00 0.00 5.34
500 844 1.073177 CGTTTACTAACTGGGCCGTG 58.927 55.000 0.00 0.00 31.89 4.94
501 845 0.037046 CCGTTTACTAACTGGGCCGT 60.037 55.000 0.00 0.00 31.89 5.68
502 846 0.741927 CCCGTTTACTAACTGGGCCG 60.742 60.000 0.00 0.00 39.48 6.13
503 847 3.164026 CCCGTTTACTAACTGGGCC 57.836 57.895 0.00 0.00 39.48 5.80
505 849 0.741927 CGGCCCGTTTACTAACTGGG 60.742 60.000 0.00 11.19 44.21 4.45
506 850 0.741927 CCGGCCCGTTTACTAACTGG 60.742 60.000 0.85 0.00 40.48 4.00
507 851 1.363885 GCCGGCCCGTTTACTAACTG 61.364 60.000 18.11 0.00 31.89 3.16
508 852 1.078918 GCCGGCCCGTTTACTAACT 60.079 57.895 18.11 0.00 31.89 2.24
509 853 1.375780 TGCCGGCCCGTTTACTAAC 60.376 57.895 26.77 0.00 0.00 2.34
510 854 1.375780 GTGCCGGCCCGTTTACTAA 60.376 57.895 26.77 0.00 0.00 2.24
511 855 1.901654 ATGTGCCGGCCCGTTTACTA 61.902 55.000 26.77 5.51 0.00 1.82
512 856 2.757980 AATGTGCCGGCCCGTTTACT 62.758 55.000 26.77 0.00 0.00 2.24
513 857 2.337246 AATGTGCCGGCCCGTTTAC 61.337 57.895 26.77 15.11 0.00 2.01
514 858 2.034376 AATGTGCCGGCCCGTTTA 59.966 55.556 26.77 0.00 0.00 2.01
515 859 3.679738 CAATGTGCCGGCCCGTTT 61.680 61.111 26.77 7.61 0.00 3.60
525 869 1.131693 GTACTAAACGGGCCAATGTGC 59.868 52.381 4.39 0.00 0.00 4.57
546 890 0.385390 CTGAAAATATGCGGCCCACC 59.615 55.000 0.00 0.00 0.00 4.61
547 891 1.065551 GACTGAAAATATGCGGCCCAC 59.934 52.381 0.00 0.00 0.00 4.61
548 892 1.064758 AGACTGAAAATATGCGGCCCA 60.065 47.619 0.00 0.00 0.00 5.36
549 893 1.680338 AGACTGAAAATATGCGGCCC 58.320 50.000 0.00 0.00 0.00 5.80
550 894 6.595716 AGATAATAGACTGAAAATATGCGGCC 59.404 38.462 0.00 0.00 0.00 6.13
551 895 7.331934 TCAGATAATAGACTGAAAATATGCGGC 59.668 37.037 0.00 0.00 39.68 6.53
552 896 8.651588 GTCAGATAATAGACTGAAAATATGCGG 58.348 37.037 0.00 0.00 43.29 5.69
553 897 8.368857 CGTCAGATAATAGACTGAAAATATGCG 58.631 37.037 0.00 0.00 43.29 4.73
554 898 8.165428 GCGTCAGATAATAGACTGAAAATATGC 58.835 37.037 0.00 0.00 43.29 3.14
555 899 9.196552 TGCGTCAGATAATAGACTGAAAATATG 57.803 33.333 0.00 0.00 43.29 1.78
556 900 9.197694 GTGCGTCAGATAATAGACTGAAAATAT 57.802 33.333 0.00 0.00 43.29 1.28
557 901 8.414003 AGTGCGTCAGATAATAGACTGAAAATA 58.586 33.333 0.00 0.00 43.29 1.40
558 902 7.223582 CAGTGCGTCAGATAATAGACTGAAAAT 59.776 37.037 0.00 0.00 43.29 1.82
559 903 6.531594 CAGTGCGTCAGATAATAGACTGAAAA 59.468 38.462 0.00 0.00 43.29 2.29
560 904 6.036470 CAGTGCGTCAGATAATAGACTGAAA 58.964 40.000 0.00 0.00 43.29 2.69
561 905 5.357032 TCAGTGCGTCAGATAATAGACTGAA 59.643 40.000 0.00 0.00 43.29 3.02
562 906 4.881850 TCAGTGCGTCAGATAATAGACTGA 59.118 41.667 0.00 0.00 40.22 3.41
563 907 5.175090 TCAGTGCGTCAGATAATAGACTG 57.825 43.478 0.00 0.00 35.72 3.51
564 908 4.261405 GCTCAGTGCGTCAGATAATAGACT 60.261 45.833 0.00 0.00 32.68 3.24
565 909 3.978217 GCTCAGTGCGTCAGATAATAGAC 59.022 47.826 0.00 0.00 0.00 2.59
566 910 3.632145 TGCTCAGTGCGTCAGATAATAGA 59.368 43.478 0.00 0.00 46.63 1.98
567 911 3.969899 TGCTCAGTGCGTCAGATAATAG 58.030 45.455 0.00 0.00 46.63 1.73
568 912 4.590850 ATGCTCAGTGCGTCAGATAATA 57.409 40.909 0.00 0.00 46.63 0.98
569 913 2.967599 TGCTCAGTGCGTCAGATAAT 57.032 45.000 0.00 0.00 46.63 1.28
570 914 2.967599 ATGCTCAGTGCGTCAGATAA 57.032 45.000 0.00 0.00 46.63 1.75
571 915 2.967599 AATGCTCAGTGCGTCAGATA 57.032 45.000 0.00 0.00 46.63 1.98
572 916 2.105006 AAATGCTCAGTGCGTCAGAT 57.895 45.000 0.00 0.00 46.63 2.90
573 917 1.882912 AAAATGCTCAGTGCGTCAGA 58.117 45.000 0.00 0.00 46.63 3.27
574 918 2.693797 AAAAATGCTCAGTGCGTCAG 57.306 45.000 0.00 0.00 46.63 3.51
590 934 9.418045 GCTCAACATGTAAAAATAGGCTAAAAA 57.582 29.630 0.00 0.00 0.00 1.94
591 935 8.032451 GGCTCAACATGTAAAAATAGGCTAAAA 58.968 33.333 0.00 0.00 0.00 1.52
592 936 7.177568 TGGCTCAACATGTAAAAATAGGCTAAA 59.822 33.333 0.00 0.00 0.00 1.85
593 937 6.661377 TGGCTCAACATGTAAAAATAGGCTAA 59.339 34.615 0.00 0.00 0.00 3.09
594 938 6.184068 TGGCTCAACATGTAAAAATAGGCTA 58.816 36.000 0.00 0.00 0.00 3.93
595 939 5.016173 TGGCTCAACATGTAAAAATAGGCT 58.984 37.500 0.00 0.00 0.00 4.58
596 940 5.323371 TGGCTCAACATGTAAAAATAGGC 57.677 39.130 0.00 3.92 0.00 3.93
642 986 1.068125 GCACGGCCCGATTAAGTTTTT 60.068 47.619 11.71 0.00 0.00 1.94
643 987 0.524414 GCACGGCCCGATTAAGTTTT 59.476 50.000 11.71 0.00 0.00 2.43
644 988 1.310216 GGCACGGCCCGATTAAGTTT 61.310 55.000 11.71 0.00 44.06 2.66
645 989 1.747745 GGCACGGCCCGATTAAGTT 60.748 57.895 11.71 0.00 44.06 2.66
646 990 2.124860 GGCACGGCCCGATTAAGT 60.125 61.111 11.71 0.00 44.06 2.24
675 1019 4.517934 CCCTGGAGGCTGGGCATG 62.518 72.222 0.00 0.00 36.61 4.06
730 1074 3.440415 GGCACTGGCTAAACGGGC 61.440 66.667 0.00 0.00 40.87 6.13
731 1075 3.124921 CGGCACTGGCTAAACGGG 61.125 66.667 0.52 0.00 40.87 5.28
732 1076 2.358247 ACGGCACTGGCTAAACGG 60.358 61.111 0.52 0.00 40.87 4.44
733 1077 2.860293 CACGGCACTGGCTAAACG 59.140 61.111 0.52 0.00 40.87 3.60
734 1078 2.561373 GCACGGCACTGGCTAAAC 59.439 61.111 0.52 0.00 40.87 2.01
735 1079 2.671619 GGCACGGCACTGGCTAAA 60.672 61.111 0.52 0.00 40.87 1.85
785 1129 2.107204 AGACTATAGCTGGCCAAATGGG 59.893 50.000 7.01 0.00 40.85 4.00
786 1130 3.498774 AGACTATAGCTGGCCAAATGG 57.501 47.619 7.01 5.55 38.53 3.16
787 1131 3.567164 CCAAGACTATAGCTGGCCAAATG 59.433 47.826 7.01 0.00 0.00 2.32
788 1132 3.435601 CCCAAGACTATAGCTGGCCAAAT 60.436 47.826 7.01 3.30 0.00 2.32
789 1133 2.092429 CCCAAGACTATAGCTGGCCAAA 60.092 50.000 7.01 0.00 0.00 3.28
790 1134 1.490490 CCCAAGACTATAGCTGGCCAA 59.510 52.381 7.01 0.00 0.00 4.52
791 1135 1.131638 CCCAAGACTATAGCTGGCCA 58.868 55.000 4.71 4.71 0.00 5.36
792 1136 1.424638 TCCCAAGACTATAGCTGGCC 58.575 55.000 0.00 0.00 0.00 5.36
793 1137 3.558109 GGAATCCCAAGACTATAGCTGGC 60.558 52.174 0.00 0.00 0.00 4.85
794 1138 3.648067 TGGAATCCCAAGACTATAGCTGG 59.352 47.826 0.00 4.51 40.09 4.85
795 1139 4.262808 CCTGGAATCCCAAGACTATAGCTG 60.263 50.000 0.00 0.00 42.98 4.24
796 1140 3.906846 CCTGGAATCCCAAGACTATAGCT 59.093 47.826 0.00 0.00 42.98 3.32
797 1141 3.558109 GCCTGGAATCCCAAGACTATAGC 60.558 52.174 0.00 0.00 42.98 2.97
798 1142 3.648067 TGCCTGGAATCCCAAGACTATAG 59.352 47.826 0.00 0.00 42.98 1.31
799 1143 3.391296 GTGCCTGGAATCCCAAGACTATA 59.609 47.826 0.00 0.00 42.98 1.31
800 1144 2.173569 GTGCCTGGAATCCCAAGACTAT 59.826 50.000 0.00 0.00 42.98 2.12
801 1145 1.559682 GTGCCTGGAATCCCAAGACTA 59.440 52.381 0.00 0.00 42.98 2.59
802 1146 0.329596 GTGCCTGGAATCCCAAGACT 59.670 55.000 0.00 0.00 42.98 3.24
803 1147 0.681243 GGTGCCTGGAATCCCAAGAC 60.681 60.000 0.00 0.00 42.98 3.01
804 1148 0.846427 AGGTGCCTGGAATCCCAAGA 60.846 55.000 0.00 0.00 42.98 3.02
805 1149 0.394899 GAGGTGCCTGGAATCCCAAG 60.395 60.000 0.00 0.00 42.98 3.61
806 1150 0.846427 AGAGGTGCCTGGAATCCCAA 60.846 55.000 0.00 0.00 42.98 4.12
807 1151 1.229951 AGAGGTGCCTGGAATCCCA 60.230 57.895 0.00 0.00 40.95 4.37
808 1152 1.225704 CAGAGGTGCCTGGAATCCC 59.774 63.158 0.00 0.00 0.00 3.85
809 1153 4.972875 CAGAGGTGCCTGGAATCC 57.027 61.111 0.00 0.00 0.00 3.01
958 1308 4.996434 GATGAGGATGCGGCGGGG 62.996 72.222 9.78 0.00 0.00 5.73
1026 1380 3.471806 GGAGGAAGGGGAGACGGC 61.472 72.222 0.00 0.00 0.00 5.68
1029 1383 2.764547 CGGGGAGGAAGGGGAGAC 60.765 72.222 0.00 0.00 0.00 3.36
1255 1628 2.892425 GGTTCAGGCGATGCTCCG 60.892 66.667 0.00 0.00 0.00 4.63
1290 1663 2.745492 GGGCTCTGCTGCAGACAC 60.745 66.667 27.35 20.93 35.39 3.67
1404 1777 3.515502 TGTAGTGATGGAGGAGACCTTTG 59.484 47.826 0.00 0.00 31.76 2.77
1428 1801 1.877637 TGGAACACAGTGTCGAATGG 58.122 50.000 6.67 0.00 0.00 3.16
1442 1815 6.630443 CGTACGTACAATATAGTGAGTGGAAC 59.370 42.308 24.50 0.00 0.00 3.62
1463 1836 5.762045 TGGACTCAAAACTGTACTACGTAC 58.238 41.667 0.00 0.00 39.24 3.67
1464 1837 5.563475 GCTGGACTCAAAACTGTACTACGTA 60.563 44.000 0.00 0.00 0.00 3.57
1465 1838 4.795308 GCTGGACTCAAAACTGTACTACGT 60.795 45.833 0.00 0.00 0.00 3.57
1466 1839 3.673809 GCTGGACTCAAAACTGTACTACG 59.326 47.826 0.00 0.00 0.00 3.51
1467 1840 4.884247 AGCTGGACTCAAAACTGTACTAC 58.116 43.478 0.00 0.00 0.00 2.73
1468 1841 5.135508 GAGCTGGACTCAAAACTGTACTA 57.864 43.478 0.00 0.00 45.49 1.82
1469 1842 3.996480 GAGCTGGACTCAAAACTGTACT 58.004 45.455 0.00 0.00 45.49 2.73
1498 1871 5.923204 AGAGATCCATGTGTCTATCAAACC 58.077 41.667 0.00 0.00 0.00 3.27
1518 1891 1.527034 TGGCTGCAGTTAAGCAAGAG 58.473 50.000 16.64 0.00 45.13 2.85
1610 1984 1.439228 CGATCTGATCCAGCGGTGT 59.561 57.895 14.40 0.00 0.00 4.16
1629 2003 4.163427 TCCAGATAAGGGACTCATCATCC 58.837 47.826 0.00 0.00 38.49 3.51
1634 2008 4.230455 CCTTCTCCAGATAAGGGACTCAT 58.770 47.826 4.32 0.00 38.49 2.90
1636 2010 2.367241 GCCTTCTCCAGATAAGGGACTC 59.633 54.545 12.30 0.00 42.19 3.36
1637 2011 2.293184 TGCCTTCTCCAGATAAGGGACT 60.293 50.000 12.30 0.00 42.19 3.85
1639 2013 2.568546 TGCCTTCTCCAGATAAGGGA 57.431 50.000 12.30 7.71 42.19 4.20
1679 2062 0.406750 TCAGGAACGGAGGGAGTACA 59.593 55.000 0.00 0.00 0.00 2.90
1685 2068 4.589374 AGACTTATATTCAGGAACGGAGGG 59.411 45.833 0.00 0.00 31.97 4.30
1687 2070 8.494016 AAAAAGACTTATATTCAGGAACGGAG 57.506 34.615 0.00 0.00 31.97 4.63
1713 2096 8.740906 CCGTATGTAGTCCATATACAAATCTCT 58.259 37.037 0.00 0.00 38.29 3.10
1714 2097 8.737175 TCCGTATGTAGTCCATATACAAATCTC 58.263 37.037 0.00 0.00 38.29 2.75
1715 2098 8.645814 TCCGTATGTAGTCCATATACAAATCT 57.354 34.615 0.00 0.00 38.29 2.40
1716 2099 9.302345 CATCCGTATGTAGTCCATATACAAATC 57.698 37.037 0.00 0.00 38.29 2.17
1717 2100 9.031537 TCATCCGTATGTAGTCCATATACAAAT 57.968 33.333 0.00 0.00 38.29 2.32
1718 2101 8.411991 TCATCCGTATGTAGTCCATATACAAA 57.588 34.615 0.00 0.00 38.29 2.83
1719 2102 8.411991 TTCATCCGTATGTAGTCCATATACAA 57.588 34.615 0.00 0.00 38.29 2.41
1720 2103 8.589701 ATTCATCCGTATGTAGTCCATATACA 57.410 34.615 0.00 0.00 38.29 2.29
1725 2108 8.904834 GTCTATATTCATCCGTATGTAGTCCAT 58.095 37.037 0.00 0.00 37.58 3.41
1726 2109 7.886446 TGTCTATATTCATCCGTATGTAGTCCA 59.114 37.037 0.00 0.00 34.50 4.02
1727 2110 8.277490 TGTCTATATTCATCCGTATGTAGTCC 57.723 38.462 0.00 0.00 34.50 3.85
1762 2145 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
1763 2146 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
1764 2147 6.094603 ACATGGAGCAAAATGAGTGAATCTAC 59.905 38.462 0.00 0.00 0.00 2.59
1765 2148 6.094464 CACATGGAGCAAAATGAGTGAATCTA 59.906 38.462 0.00 0.00 0.00 1.98
1766 2149 5.014858 ACATGGAGCAAAATGAGTGAATCT 58.985 37.500 0.00 0.00 0.00 2.40
1767 2150 5.100259 CACATGGAGCAAAATGAGTGAATC 58.900 41.667 0.00 0.00 0.00 2.52
1768 2151 4.525487 ACACATGGAGCAAAATGAGTGAAT 59.475 37.500 0.00 0.00 0.00 2.57
1769 2152 3.890756 ACACATGGAGCAAAATGAGTGAA 59.109 39.130 0.00 0.00 0.00 3.18
1770 2153 3.489355 ACACATGGAGCAAAATGAGTGA 58.511 40.909 0.00 0.00 0.00 3.41
1771 2154 3.928727 ACACATGGAGCAAAATGAGTG 57.071 42.857 0.00 0.00 0.00 3.51
1772 2155 4.655963 ACTACACATGGAGCAAAATGAGT 58.344 39.130 0.00 1.38 33.18 3.41
1774 2157 4.009675 GGACTACACATGGAGCAAAATGA 58.990 43.478 0.00 0.00 0.00 2.57
1775 2158 3.758023 TGGACTACACATGGAGCAAAATG 59.242 43.478 0.00 0.00 0.00 2.32
1776 2159 4.032960 TGGACTACACATGGAGCAAAAT 57.967 40.909 0.00 0.00 0.00 1.82
1779 2162 5.372343 AATATGGACTACACATGGAGCAA 57.628 39.130 0.00 0.00 0.00 3.91
1780 2163 5.838521 TCTAATATGGACTACACATGGAGCA 59.161 40.000 0.00 0.00 0.00 4.26
1783 2166 8.727100 AGATTCTAATATGGACTACACATGGA 57.273 34.615 0.00 0.00 0.00 3.41
1784 2167 8.811017 AGAGATTCTAATATGGACTACACATGG 58.189 37.037 0.00 0.00 0.00 3.66
1811 2194 9.392259 CCTCCGTTCCTAATTATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1812 2195 7.991460 CCCTCCGTTCCTAATTATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1813 2196 7.346436 TCCCTCCGTTCCTAATTATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1814 2197 6.842807 TCCCTCCGTTCCTAATTATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1815 2198 6.379579 TCCCTCCGTTCCTAATTATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1816 2199 6.267242 ACTCCCTCCGTTCCTAATTATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1817 2200 6.141790 ACTCCCTCCGTTCCTAATTATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1818 2201 6.667558 ACTCCCTCCGTTCCTAATTATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1819 2202 7.300658 ACTACTCCCTCCGTTCCTAATTATAA 58.699 38.462 0.00 0.00 0.00 0.98
1820 2203 6.856757 ACTACTCCCTCCGTTCCTAATTATA 58.143 40.000 0.00 0.00 0.00 0.98
1821 2204 5.713807 ACTACTCCCTCCGTTCCTAATTAT 58.286 41.667 0.00 0.00 0.00 1.28
1826 2209 6.460103 AATATACTACTCCCTCCGTTCCTA 57.540 41.667 0.00 0.00 0.00 2.94
1827 2210 5.336491 AATATACTACTCCCTCCGTTCCT 57.664 43.478 0.00 0.00 0.00 3.36
1886 2269 8.529476 CCTACTCGGCAAAAGGTATATATACTT 58.471 37.037 19.78 11.63 33.81 2.24
1888 2271 7.263496 CCCTACTCGGCAAAAGGTATATATAC 58.737 42.308 13.60 13.60 0.00 1.47
1889 2272 6.381994 CCCCTACTCGGCAAAAGGTATATATA 59.618 42.308 0.00 0.00 0.00 0.86
1890 2273 5.189145 CCCCTACTCGGCAAAAGGTATATAT 59.811 44.000 0.00 0.00 0.00 0.86
1891 2274 4.529377 CCCCTACTCGGCAAAAGGTATATA 59.471 45.833 0.00 0.00 0.00 0.86
1892 2275 3.326880 CCCCTACTCGGCAAAAGGTATAT 59.673 47.826 0.00 0.00 0.00 0.86
1902 2285 1.953311 GCAAAATTCCCCTACTCGGCA 60.953 52.381 0.00 0.00 0.00 5.69
1903 2286 0.738975 GCAAAATTCCCCTACTCGGC 59.261 55.000 0.00 0.00 0.00 5.54
1905 2288 1.014352 CCGCAAAATTCCCCTACTCG 58.986 55.000 0.00 0.00 0.00 4.18
1980 2363 2.860735 CACCTGAGCATAGCTTCGTAAC 59.139 50.000 0.00 0.00 39.88 2.50
2027 2411 4.846137 CGAAGTCGAAGCAATTAAAACCAG 59.154 41.667 0.00 0.00 43.02 4.00
2125 2509 1.483415 TGTAACCCAGGGATAAGTCGC 59.517 52.381 14.54 0.00 37.56 5.19
2131 2515 2.436542 CGGAACATGTAACCCAGGGATA 59.563 50.000 14.54 0.41 0.00 2.59
2145 2529 2.257353 GCAAGGTTGAGCGGAACAT 58.743 52.632 0.00 0.00 0.00 2.71
2264 2649 6.237901 TGAAGTGTGTTAGCATACCAAGAAT 58.762 36.000 2.85 0.00 37.43 2.40
2422 2813 6.039717 TGCTTTATTGGGACTATGCAAGAATC 59.960 38.462 0.00 0.00 0.00 2.52
2426 2817 5.581126 TTGCTTTATTGGGACTATGCAAG 57.419 39.130 0.00 0.00 34.82 4.01
2449 2840 6.509418 TCAGTTTGTGTAAAGCAATATCCC 57.491 37.500 0.00 0.00 0.00 3.85
2450 2841 7.865385 TGTTTCAGTTTGTGTAAAGCAATATCC 59.135 33.333 0.00 0.00 0.00 2.59
2471 2862 9.646336 GAACGGTCACATATATTGTAATGTTTC 57.354 33.333 0.00 0.00 36.57 2.78
2473 2864 8.725405 TGAACGGTCACATATATTGTAATGTT 57.275 30.769 0.00 0.00 36.57 2.71
2488 2879 0.517316 GCCAACATCTGAACGGTCAC 59.483 55.000 0.00 0.00 0.00 3.67
2491 2882 1.880027 GAAAGCCAACATCTGAACGGT 59.120 47.619 0.00 0.00 0.00 4.83
2538 2929 7.170320 ACTGACAAAAATTCAGCACATCATTTC 59.830 33.333 0.00 0.00 43.79 2.17
2603 3013 5.332205 GGTGTGCACATGTTGAATTTTAACG 60.332 40.000 24.69 0.00 0.00 3.18
2622 3032 1.001048 CACAATGGCTTCAGTGGTGTG 60.001 52.381 0.00 0.00 40.40 3.82
2864 3277 3.557054 GCGGCCATCAGATAATTCCAGTA 60.557 47.826 2.24 0.00 0.00 2.74
2872 3285 2.158623 AGGAAATGCGGCCATCAGATAA 60.159 45.455 2.24 0.00 0.00 1.75
2884 3297 1.078709 TTTCTCTGCGAGGAAATGCG 58.921 50.000 5.87 0.00 0.00 4.73
2894 3307 2.542411 GGCTGCCATATTTTTCTCTGCG 60.542 50.000 15.17 0.00 0.00 5.18
2914 3327 5.065914 TCAGACAAGATTGAAGGACTTTGG 58.934 41.667 0.00 0.00 0.00 3.28
3048 3461 0.606401 TTTTGGGAGCAGCTCTTCCG 60.606 55.000 21.99 0.00 44.03 4.30
3121 3534 0.321122 GAGGCATGGCTCTTATCCCG 60.321 60.000 35.12 0.00 0.00 5.14
3190 3603 2.615912 GCAATTGCTTCTCTCGCCTATT 59.384 45.455 23.21 0.00 38.21 1.73
3331 3744 0.465097 CCTTGATCGCCTTCCAGCAT 60.465 55.000 0.00 0.00 0.00 3.79
3404 3818 2.696187 GGTCTCTCCAACTCCCTGATAC 59.304 54.545 0.00 0.00 35.97 2.24
3427 3841 4.841246 ACTGAGGGTATCACATAATCCTCC 59.159 45.833 0.00 0.00 36.99 4.30
3438 3852 2.025981 AGCAATTGCACTGAGGGTATCA 60.026 45.455 30.89 0.00 45.16 2.15
3445 3859 6.436261 CCTTCATATAAGCAATTGCACTGAG 58.564 40.000 30.89 15.99 45.16 3.35
4213 4629 5.557866 ACCTACACAGAAACTCATAAACCC 58.442 41.667 0.00 0.00 0.00 4.11
4227 4643 4.702612 AGTGACTCACATCTACCTACACAG 59.297 45.833 11.80 0.00 36.74 3.66
4283 4699 8.298854 TGAATGAACATCTCATAAACACAAAGG 58.701 33.333 0.00 0.00 44.43 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.