Multiple sequence alignment - TraesCS7A01G144200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G144200 chr7A 100.000 2836 0 0 1 2836 95110579 95107744 0.000000e+00 5238
1 TraesCS7A01G144200 chr7A 100.000 106 0 0 2731 2836 425323148 425323253 2.230000e-46 196
2 TraesCS7A01G144200 chr3A 96.437 2077 72 2 506 2581 689754779 689752704 0.000000e+00 3424
3 TraesCS7A01G144200 chr3A 93.029 1492 88 6 1 1479 298753539 298752051 0.000000e+00 2165
4 TraesCS7A01G144200 chr3A 86.078 1415 140 35 1174 2578 443960998 443962365 0.000000e+00 1469
5 TraesCS7A01G144200 chr3A 94.886 176 7 2 2565 2739 74557300 74557126 1.000000e-69 274
6 TraesCS7A01G144200 chr3A 100.000 106 0 0 2731 2836 467596791 467596896 2.230000e-46 196
7 TraesCS7A01G144200 chr3B 90.371 2617 194 30 1 2578 639824930 639822333 0.000000e+00 3384
8 TraesCS7A01G144200 chr3B 89.147 2626 221 24 1 2584 790134158 790131555 0.000000e+00 3212
9 TraesCS7A01G144200 chr3B 84.615 351 51 3 2228 2578 442918494 442918841 2.090000e-91 346
10 TraesCS7A01G144200 chr2A 95.711 2075 86 3 506 2578 269306350 269304277 0.000000e+00 3336
11 TraesCS7A01G144200 chr2A 95.371 2074 94 2 506 2578 269268576 269266504 0.000000e+00 3297
12 TraesCS7A01G144200 chr2A 98.198 111 2 0 2726 2836 719366969 719367079 8.020000e-46 195
13 TraesCS7A01G144200 chr4B 95.111 1575 73 4 1 1574 669670860 669669289 0.000000e+00 2479
14 TraesCS7A01G144200 chr4B 87.314 1411 141 22 1174 2578 636652593 636651215 0.000000e+00 1580
15 TraesCS7A01G144200 chr6A 92.644 1577 79 17 1 1574 576844605 576843063 0.000000e+00 2235
16 TraesCS7A01G144200 chr6A 93.617 188 6 6 2565 2747 115514329 115514143 2.780000e-70 276
17 TraesCS7A01G144200 chr6A 93.617 188 6 6 2565 2747 115546515 115546329 2.780000e-70 276
18 TraesCS7A01G144200 chr6B 89.205 1825 129 24 791 2578 557847081 557848874 0.000000e+00 2217
19 TraesCS7A01G144200 chr6B 86.544 1962 172 33 656 2579 449243195 449241288 0.000000e+00 2076
20 TraesCS7A01G144200 chr6B 90.441 272 17 2 13 284 557846781 557847043 1.620000e-92 350
21 TraesCS7A01G144200 chr6B 95.954 173 5 2 2565 2736 134233250 134233421 2.150000e-71 279
22 TraesCS7A01G144200 chr1A 87.327 1444 131 28 1155 2578 530581911 530583322 0.000000e+00 1605
23 TraesCS7A01G144200 chr1A 86.496 1444 135 34 1158 2583 236300003 236298602 0.000000e+00 1531
24 TraesCS7A01G144200 chr1B 85.441 1463 145 31 1155 2578 143194985 143196418 0.000000e+00 1459
25 TraesCS7A01G144200 chr1B 84.682 1162 129 27 1437 2580 129375926 129374796 0.000000e+00 1114
26 TraesCS7A01G144200 chr1B 87.952 415 39 11 2171 2580 32603500 32603092 1.980000e-131 479
27 TraesCS7A01G144200 chr1B 87.229 415 41 11 2172 2580 665777681 665777273 1.990000e-126 462
28 TraesCS7A01G144200 chr2D 85.278 1440 152 26 1155 2578 512463007 512464402 0.000000e+00 1430
29 TraesCS7A01G144200 chr3D 89.463 949 70 19 1652 2578 473412206 473411266 0.000000e+00 1171
30 TraesCS7A01G144200 chr3D 92.308 273 19 2 2565 2836 464212174 464211903 1.230000e-103 387
31 TraesCS7A01G144200 chr2B 90.839 775 45 5 1 761 219709940 219710702 0.000000e+00 1014
32 TraesCS7A01G144200 chr2B 93.093 637 42 1 710 1346 219710696 219711330 0.000000e+00 931
33 TraesCS7A01G144200 chr4D 87.286 409 46 6 2172 2579 194333218 194333621 1.990000e-126 462
34 TraesCS7A01G144200 chr4D 100.000 106 0 0 2731 2836 78605268 78605163 2.230000e-46 196
35 TraesCS7A01G144200 chr4D 97.321 112 3 0 2725 2836 78634887 78634998 1.040000e-44 191
36 TraesCS7A01G144200 chr6D 87.255 408 47 5 2172 2579 79802992 79803394 7.160000e-126 460
37 TraesCS7A01G144200 chr7D 92.937 269 18 1 98 365 27353461 27353193 9.530000e-105 390
38 TraesCS7A01G144200 chr7D 93.233 266 17 1 98 362 39863372 39863637 9.530000e-105 390
39 TraesCS7A01G144200 chr7D 92.565 269 19 1 98 365 228136331 228136063 4.430000e-103 385
40 TraesCS7A01G144200 chr7D 94.444 180 6 4 2565 2743 205679610 205679434 1.000000e-69 274
41 TraesCS7A01G144200 chr5D 91.760 267 20 2 2565 2830 42441851 42441586 1.240000e-98 370
42 TraesCS7A01G144200 chr5D 94.413 179 8 2 2565 2742 9048531 9048708 1.000000e-69 274
43 TraesCS7A01G144200 chr5B 96.552 174 3 3 2565 2736 685739591 685739419 4.620000e-73 285
44 TraesCS7A01G144200 chr7B 92.486 173 11 1 1 171 227228831 227228659 2.180000e-61 246
45 TraesCS7A01G144200 chr7B 81.421 183 26 3 368 543 605650430 605650249 2.950000e-30 143
46 TraesCS7A01G144200 chr4A 100.000 106 0 0 2731 2836 434701495 434701390 2.230000e-46 196
47 TraesCS7A01G144200 chr1D 97.321 112 3 0 2725 2836 327076406 327076517 1.040000e-44 191
48 TraesCS7A01G144200 chr5A 94.118 85 5 0 1 85 451133521 451133605 2.290000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G144200 chr7A 95107744 95110579 2835 True 5238.0 5238 100.000 1 2836 1 chr7A.!!$R1 2835
1 TraesCS7A01G144200 chr3A 689752704 689754779 2075 True 3424.0 3424 96.437 506 2581 1 chr3A.!!$R3 2075
2 TraesCS7A01G144200 chr3A 298752051 298753539 1488 True 2165.0 2165 93.029 1 1479 1 chr3A.!!$R2 1478
3 TraesCS7A01G144200 chr3A 443960998 443962365 1367 False 1469.0 1469 86.078 1174 2578 1 chr3A.!!$F1 1404
4 TraesCS7A01G144200 chr3B 639822333 639824930 2597 True 3384.0 3384 90.371 1 2578 1 chr3B.!!$R1 2577
5 TraesCS7A01G144200 chr3B 790131555 790134158 2603 True 3212.0 3212 89.147 1 2584 1 chr3B.!!$R2 2583
6 TraesCS7A01G144200 chr2A 269304277 269306350 2073 True 3336.0 3336 95.711 506 2578 1 chr2A.!!$R2 2072
7 TraesCS7A01G144200 chr2A 269266504 269268576 2072 True 3297.0 3297 95.371 506 2578 1 chr2A.!!$R1 2072
8 TraesCS7A01G144200 chr4B 669669289 669670860 1571 True 2479.0 2479 95.111 1 1574 1 chr4B.!!$R2 1573
9 TraesCS7A01G144200 chr4B 636651215 636652593 1378 True 1580.0 1580 87.314 1174 2578 1 chr4B.!!$R1 1404
10 TraesCS7A01G144200 chr6A 576843063 576844605 1542 True 2235.0 2235 92.644 1 1574 1 chr6A.!!$R3 1573
11 TraesCS7A01G144200 chr6B 449241288 449243195 1907 True 2076.0 2076 86.544 656 2579 1 chr6B.!!$R1 1923
12 TraesCS7A01G144200 chr6B 557846781 557848874 2093 False 1283.5 2217 89.823 13 2578 2 chr6B.!!$F2 2565
13 TraesCS7A01G144200 chr1A 530581911 530583322 1411 False 1605.0 1605 87.327 1155 2578 1 chr1A.!!$F1 1423
14 TraesCS7A01G144200 chr1A 236298602 236300003 1401 True 1531.0 1531 86.496 1158 2583 1 chr1A.!!$R1 1425
15 TraesCS7A01G144200 chr1B 143194985 143196418 1433 False 1459.0 1459 85.441 1155 2578 1 chr1B.!!$F1 1423
16 TraesCS7A01G144200 chr1B 129374796 129375926 1130 True 1114.0 1114 84.682 1437 2580 1 chr1B.!!$R2 1143
17 TraesCS7A01G144200 chr2D 512463007 512464402 1395 False 1430.0 1430 85.278 1155 2578 1 chr2D.!!$F1 1423
18 TraesCS7A01G144200 chr3D 473411266 473412206 940 True 1171.0 1171 89.463 1652 2578 1 chr3D.!!$R2 926
19 TraesCS7A01G144200 chr2B 219709940 219711330 1390 False 972.5 1014 91.966 1 1346 2 chr2B.!!$F1 1345

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 473 1.961277 GTTCCCGCATAGGCATCGG 60.961 63.158 0.0 0.0 41.24 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2386 2520 3.172229 TGCCTACTGTTTTGTTTTGGC 57.828 42.857 0.0 0.0 39.53 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.573538 TCATGTACAAAGTTGCCATGCTT 59.426 39.130 0.00 0.00 39.10 3.91
131 134 3.438781 GGATACAAGGACGAAATGCACAA 59.561 43.478 0.00 0.00 0.00 3.33
366 383 4.629634 CGTACATGACCAACAATTCTGCTA 59.370 41.667 0.00 0.00 0.00 3.49
400 417 7.433425 GCATCTCTTATTTAGCCATTGTTTCAC 59.567 37.037 0.00 0.00 0.00 3.18
428 445 6.449635 TTTCACTTAAGCAGACATGTGTTT 57.550 33.333 1.15 0.00 0.00 2.83
443 460 4.195225 TGTGTTTTGGTTTTCAGTTCCC 57.805 40.909 0.00 0.00 0.00 3.97
456 473 1.961277 GTTCCCGCATAGGCATCGG 60.961 63.158 0.00 0.00 41.24 4.18
552 569 6.042437 AGCTTGAGTCCAAATTTCCTTCATTT 59.958 34.615 0.00 0.00 0.00 2.32
590 607 6.591062 GCCATTGTTTGAGCAAATCATTTCTA 59.409 34.615 0.00 0.00 37.89 2.10
703 720 9.764363 CTCCACTTAAATACTCATAATGCTACA 57.236 33.333 0.00 0.00 0.00 2.74
704 721 9.542462 TCCACTTAAATACTCATAATGCTACAC 57.458 33.333 0.00 0.00 0.00 2.90
913 963 8.437274 AAACCTGAGACCTCTTTCTATTCTTA 57.563 34.615 0.00 0.00 0.00 2.10
914 964 8.616799 AACCTGAGACCTCTTTCTATTCTTAT 57.383 34.615 0.00 0.00 0.00 1.73
915 965 8.616799 ACCTGAGACCTCTTTCTATTCTTATT 57.383 34.615 0.00 0.00 0.00 1.40
1018 1074 1.669795 CCATGGAGCAAAAAGAACGGC 60.670 52.381 5.56 0.00 0.00 5.68
1019 1075 1.000385 CATGGAGCAAAAAGAACGGCA 60.000 47.619 0.00 0.00 0.00 5.69
1121 1177 1.235948 GCATGCTCTGGATGCTAGCC 61.236 60.000 13.29 0.00 42.52 3.93
1170 1230 4.020128 ACTTTTCTTATTCTCGCAGACCCT 60.020 41.667 0.00 0.00 0.00 4.34
1495 1569 3.758023 TCGTGCTCAATGAACCATCAAAT 59.242 39.130 0.00 0.00 39.49 2.32
1579 1655 7.065803 GCAACAACTATGCCTTCTTGTATTCTA 59.934 37.037 0.00 0.00 37.85 2.10
1617 1693 5.988561 GGAAGTTTTGGTATTCATGCAACAA 59.011 36.000 0.00 0.00 0.00 2.83
1684 1760 5.903010 TGGTTCATGATTTAGTCCCTAGCTA 59.097 40.000 0.00 0.00 0.00 3.32
1687 1763 7.232941 GGTTCATGATTTAGTCCCTAGCTACTA 59.767 40.741 0.00 0.00 0.00 1.82
1751 1828 3.754965 TGTTAGATGCCTTTGTTCAGCT 58.245 40.909 0.00 0.00 33.19 4.24
1836 1929 6.803154 AGAAGTTTGGAGTGTATTTGTAGC 57.197 37.500 0.00 0.00 0.00 3.58
2092 2217 8.642908 AAAAACTAAAAACGAAGGAAATGGAG 57.357 30.769 0.00 0.00 0.00 3.86
2192 2318 7.553760 CCTGGAAATAAAAAGGCTGCAATAATT 59.446 33.333 0.50 0.00 0.00 1.40
2386 2520 1.684386 CCTGGAGAGGCTGCTAGTGG 61.684 65.000 0.00 0.00 30.52 4.00
2417 2564 6.266558 ACAAAACAGTAGGCATATTTTGGTCA 59.733 34.615 15.92 0.00 42.07 4.02
2439 2586 5.356190 TCATAAACGTCTACGACCTTCTCAT 59.644 40.000 9.86 0.00 43.02 2.90
2524 2671 5.463499 AAAGGTCGCAAATGAAAAACAAC 57.537 34.783 0.00 0.00 0.00 3.32
2584 2731 8.458573 TGACATATTTCTTGTAGTGGTTGTTT 57.541 30.769 0.00 0.00 0.00 2.83
2585 2732 8.349245 TGACATATTTCTTGTAGTGGTTGTTTG 58.651 33.333 0.00 0.00 0.00 2.93
2586 2733 8.458573 ACATATTTCTTGTAGTGGTTGTTTGA 57.541 30.769 0.00 0.00 0.00 2.69
2587 2734 8.567948 ACATATTTCTTGTAGTGGTTGTTTGAG 58.432 33.333 0.00 0.00 0.00 3.02
2588 2735 8.783093 CATATTTCTTGTAGTGGTTGTTTGAGA 58.217 33.333 0.00 0.00 0.00 3.27
2589 2736 6.677781 TTTCTTGTAGTGGTTGTTTGAGAG 57.322 37.500 0.00 0.00 0.00 3.20
2590 2737 5.607939 TCTTGTAGTGGTTGTTTGAGAGA 57.392 39.130 0.00 0.00 0.00 3.10
2591 2738 5.601662 TCTTGTAGTGGTTGTTTGAGAGAG 58.398 41.667 0.00 0.00 0.00 3.20
2592 2739 5.362717 TCTTGTAGTGGTTGTTTGAGAGAGA 59.637 40.000 0.00 0.00 0.00 3.10
2593 2740 4.945246 TGTAGTGGTTGTTTGAGAGAGAC 58.055 43.478 0.00 0.00 0.00 3.36
2594 2741 3.477210 AGTGGTTGTTTGAGAGAGACC 57.523 47.619 0.00 0.00 0.00 3.85
2595 2742 2.771943 AGTGGTTGTTTGAGAGAGACCA 59.228 45.455 0.00 0.00 34.99 4.02
2596 2743 3.392616 AGTGGTTGTTTGAGAGAGACCAT 59.607 43.478 0.00 0.00 39.16 3.55
2597 2744 3.748568 GTGGTTGTTTGAGAGAGACCATC 59.251 47.826 0.00 0.00 39.16 3.51
2598 2745 3.648067 TGGTTGTTTGAGAGAGACCATCT 59.352 43.478 0.00 0.00 42.61 2.90
2599 2746 4.103153 TGGTTGTTTGAGAGAGACCATCTT 59.897 41.667 0.00 0.00 38.84 2.40
2600 2747 4.693095 GGTTGTTTGAGAGAGACCATCTTC 59.307 45.833 0.00 0.00 38.84 2.87
2601 2748 5.300752 GTTGTTTGAGAGAGACCATCTTCA 58.699 41.667 0.00 0.00 38.84 3.02
2602 2749 5.752036 TGTTTGAGAGAGACCATCTTCAT 57.248 39.130 0.00 0.00 38.84 2.57
2603 2750 5.728471 TGTTTGAGAGAGACCATCTTCATC 58.272 41.667 0.00 0.00 38.84 2.92
2604 2751 5.115480 GTTTGAGAGAGACCATCTTCATCC 58.885 45.833 0.00 0.00 38.84 3.51
2605 2752 4.262891 TGAGAGAGACCATCTTCATCCT 57.737 45.455 0.00 0.00 38.84 3.24
2606 2753 5.394562 TGAGAGAGACCATCTTCATCCTA 57.605 43.478 0.00 0.00 38.84 2.94
2607 2754 5.136828 TGAGAGAGACCATCTTCATCCTAC 58.863 45.833 0.00 0.00 38.84 3.18
2608 2755 4.141287 AGAGAGACCATCTTCATCCTACG 58.859 47.826 0.00 0.00 38.84 3.51
2609 2756 2.625790 AGAGACCATCTTCATCCTACGC 59.374 50.000 0.00 0.00 32.99 4.42
2610 2757 1.689273 AGACCATCTTCATCCTACGCC 59.311 52.381 0.00 0.00 0.00 5.68
2611 2758 1.689273 GACCATCTTCATCCTACGCCT 59.311 52.381 0.00 0.00 0.00 5.52
2612 2759 1.689273 ACCATCTTCATCCTACGCCTC 59.311 52.381 0.00 0.00 0.00 4.70
2613 2760 1.001406 CCATCTTCATCCTACGCCTCC 59.999 57.143 0.00 0.00 0.00 4.30
2614 2761 1.001406 CATCTTCATCCTACGCCTCCC 59.999 57.143 0.00 0.00 0.00 4.30
2615 2762 0.032515 TCTTCATCCTACGCCTCCCA 60.033 55.000 0.00 0.00 0.00 4.37
2616 2763 0.105039 CTTCATCCTACGCCTCCCAC 59.895 60.000 0.00 0.00 0.00 4.61
2617 2764 1.672854 TTCATCCTACGCCTCCCACG 61.673 60.000 0.00 0.00 0.00 4.94
2618 2765 2.838225 ATCCTACGCCTCCCACGG 60.838 66.667 0.00 0.00 34.00 4.94
2619 2766 3.369410 ATCCTACGCCTCCCACGGA 62.369 63.158 0.00 0.00 34.00 4.69
2620 2767 2.658321 ATCCTACGCCTCCCACGGAT 62.658 60.000 0.00 0.00 34.00 4.18
2621 2768 2.432300 CCTACGCCTCCCACGGATT 61.432 63.158 0.00 0.00 34.00 3.01
2622 2769 1.227263 CTACGCCTCCCACGGATTG 60.227 63.158 0.00 0.00 34.00 2.67
2623 2770 1.672854 CTACGCCTCCCACGGATTGA 61.673 60.000 0.00 0.00 34.00 2.57
2624 2771 1.046472 TACGCCTCCCACGGATTGAT 61.046 55.000 0.00 0.00 34.00 2.57
2625 2772 1.046472 ACGCCTCCCACGGATTGATA 61.046 55.000 0.00 0.00 34.00 2.15
2626 2773 0.105964 CGCCTCCCACGGATTGATAA 59.894 55.000 0.00 0.00 0.00 1.75
2627 2774 1.474320 CGCCTCCCACGGATTGATAAA 60.474 52.381 0.00 0.00 0.00 1.40
2628 2775 1.947456 GCCTCCCACGGATTGATAAAC 59.053 52.381 0.00 0.00 0.00 2.01
2629 2776 2.572290 CCTCCCACGGATTGATAAACC 58.428 52.381 0.00 0.00 0.00 3.27
2630 2777 2.172717 CCTCCCACGGATTGATAAACCT 59.827 50.000 0.00 0.00 0.00 3.50
2631 2778 3.371595 CCTCCCACGGATTGATAAACCTT 60.372 47.826 0.00 0.00 0.00 3.50
2632 2779 4.141574 CCTCCCACGGATTGATAAACCTTA 60.142 45.833 0.00 0.00 0.00 2.69
2633 2780 5.031066 TCCCACGGATTGATAAACCTTAG 57.969 43.478 0.00 0.00 0.00 2.18
2634 2781 4.134563 CCCACGGATTGATAAACCTTAGG 58.865 47.826 0.00 0.00 0.00 2.69
2635 2782 4.384868 CCCACGGATTGATAAACCTTAGGT 60.385 45.833 0.00 0.00 37.65 3.08
2636 2783 4.814771 CCACGGATTGATAAACCTTAGGTC 59.185 45.833 3.62 0.00 33.12 3.85
2637 2784 5.424757 CACGGATTGATAAACCTTAGGTCA 58.575 41.667 3.62 0.00 33.12 4.02
2638 2785 6.055588 CACGGATTGATAAACCTTAGGTCAT 58.944 40.000 3.62 0.80 33.12 3.06
2639 2786 6.202954 CACGGATTGATAAACCTTAGGTCATC 59.797 42.308 3.62 11.24 33.12 2.92
2640 2787 5.701290 CGGATTGATAAACCTTAGGTCATCC 59.299 44.000 17.80 13.89 33.12 3.51
2641 2788 6.601332 GGATTGATAAACCTTAGGTCATCCA 58.399 40.000 17.80 10.94 33.12 3.41
2642 2789 6.486993 GGATTGATAAACCTTAGGTCATCCAC 59.513 42.308 17.80 11.40 33.12 4.02
2643 2790 6.636454 TTGATAAACCTTAGGTCATCCACT 57.364 37.500 17.80 0.00 33.12 4.00
2644 2791 6.636454 TGATAAACCTTAGGTCATCCACTT 57.364 37.500 17.80 5.73 33.12 3.16
2645 2792 6.414732 TGATAAACCTTAGGTCATCCACTTG 58.585 40.000 17.80 0.00 33.12 3.16
2646 2793 4.993705 AAACCTTAGGTCATCCACTTGA 57.006 40.909 3.62 0.00 33.12 3.02
2647 2794 4.559862 AACCTTAGGTCATCCACTTGAG 57.440 45.455 3.62 0.00 33.12 3.02
2648 2795 2.840651 ACCTTAGGTCATCCACTTGAGG 59.159 50.000 0.00 0.00 35.89 3.86
2649 2796 2.171448 CCTTAGGTCATCCACTTGAGGG 59.829 54.545 0.00 0.00 35.89 4.30
2650 2797 2.940514 TAGGTCATCCACTTGAGGGA 57.059 50.000 0.00 0.00 39.14 4.20
2651 2798 2.044793 AGGTCATCCACTTGAGGGAA 57.955 50.000 0.00 0.00 38.09 3.97
2652 2799 2.348472 AGGTCATCCACTTGAGGGAAA 58.652 47.619 0.00 0.00 38.09 3.13
2653 2800 2.922283 AGGTCATCCACTTGAGGGAAAT 59.078 45.455 0.00 0.00 38.09 2.17
2654 2801 3.334881 AGGTCATCCACTTGAGGGAAATT 59.665 43.478 0.00 0.00 38.09 1.82
2655 2802 4.089361 GGTCATCCACTTGAGGGAAATTT 58.911 43.478 0.00 0.00 38.09 1.82
2656 2803 4.082026 GGTCATCCACTTGAGGGAAATTTG 60.082 45.833 0.00 0.00 38.09 2.32
2657 2804 4.082026 GTCATCCACTTGAGGGAAATTTGG 60.082 45.833 0.00 0.00 38.09 3.28
2658 2805 3.611025 TCCACTTGAGGGAAATTTGGT 57.389 42.857 0.00 0.00 0.00 3.67
2659 2806 4.733077 TCCACTTGAGGGAAATTTGGTA 57.267 40.909 0.00 0.00 0.00 3.25
2660 2807 4.403734 TCCACTTGAGGGAAATTTGGTAC 58.596 43.478 0.00 0.00 0.00 3.34
2661 2808 4.105697 TCCACTTGAGGGAAATTTGGTACT 59.894 41.667 0.00 0.00 0.00 2.73
2662 2809 4.218417 CCACTTGAGGGAAATTTGGTACTG 59.782 45.833 0.00 0.00 0.00 2.74
2663 2810 4.827284 CACTTGAGGGAAATTTGGTACTGT 59.173 41.667 0.00 0.00 0.00 3.55
2664 2811 5.048713 CACTTGAGGGAAATTTGGTACTGTC 60.049 44.000 0.00 0.00 0.00 3.51
2665 2812 4.028993 TGAGGGAAATTTGGTACTGTCC 57.971 45.455 0.00 0.00 0.00 4.02
2666 2813 3.655777 TGAGGGAAATTTGGTACTGTCCT 59.344 43.478 0.00 0.00 0.00 3.85
2667 2814 4.847512 TGAGGGAAATTTGGTACTGTCCTA 59.152 41.667 0.00 0.00 0.00 2.94
2668 2815 5.175388 AGGGAAATTTGGTACTGTCCTAC 57.825 43.478 0.00 0.00 0.00 3.18
2669 2816 4.600111 AGGGAAATTTGGTACTGTCCTACA 59.400 41.667 0.00 0.00 0.00 2.74
2670 2817 5.073965 AGGGAAATTTGGTACTGTCCTACAA 59.926 40.000 0.00 0.00 0.00 2.41
2671 2818 5.771165 GGGAAATTTGGTACTGTCCTACAAA 59.229 40.000 0.00 0.00 35.76 2.83
2672 2819 6.294342 GGGAAATTTGGTACTGTCCTACAAAC 60.294 42.308 0.00 0.00 34.34 2.93
2673 2820 6.294342 GGAAATTTGGTACTGTCCTACAAACC 60.294 42.308 0.00 4.91 35.74 3.27
2674 2821 5.578157 ATTTGGTACTGTCCTACAAACCT 57.422 39.130 10.76 0.00 36.02 3.50
2675 2822 4.612264 TTGGTACTGTCCTACAAACCTC 57.388 45.455 10.76 0.00 36.02 3.85
2676 2823 3.853207 TGGTACTGTCCTACAAACCTCT 58.147 45.455 10.76 0.00 36.02 3.69
2677 2824 3.576982 TGGTACTGTCCTACAAACCTCTG 59.423 47.826 10.76 0.00 36.02 3.35
2678 2825 2.841442 ACTGTCCTACAAACCTCTGC 57.159 50.000 0.00 0.00 0.00 4.26
2679 2826 2.047061 ACTGTCCTACAAACCTCTGCA 58.953 47.619 0.00 0.00 0.00 4.41
2680 2827 2.224305 ACTGTCCTACAAACCTCTGCAC 60.224 50.000 0.00 0.00 0.00 4.57
2681 2828 2.037772 CTGTCCTACAAACCTCTGCACT 59.962 50.000 0.00 0.00 0.00 4.40
2682 2829 2.438021 TGTCCTACAAACCTCTGCACTT 59.562 45.455 0.00 0.00 0.00 3.16
2683 2830 2.808543 GTCCTACAAACCTCTGCACTTG 59.191 50.000 0.00 0.00 0.00 3.16
2684 2831 2.154462 CCTACAAACCTCTGCACTTGG 58.846 52.381 0.00 0.00 0.00 3.61
2685 2832 2.224523 CCTACAAACCTCTGCACTTGGA 60.225 50.000 2.33 0.00 0.00 3.53
2686 2833 1.972872 ACAAACCTCTGCACTTGGAG 58.027 50.000 2.33 0.00 34.56 3.86
2689 2836 2.045536 CCTCTGCACTTGGAGGCC 60.046 66.667 6.78 0.00 41.92 5.19
2690 2837 2.045536 CTCTGCACTTGGAGGCCC 60.046 66.667 0.00 0.00 34.00 5.80
2691 2838 2.853542 TCTGCACTTGGAGGCCCA 60.854 61.111 0.00 0.00 41.64 5.36
2693 2840 2.203480 TGCACTTGGAGGCCCAAC 60.203 61.111 0.00 0.00 46.94 3.77
2694 2841 2.203480 GCACTTGGAGGCCCAACA 60.203 61.111 0.00 0.00 46.94 3.33
2695 2842 1.832167 GCACTTGGAGGCCCAACAA 60.832 57.895 0.00 1.03 46.94 2.83
2696 2843 2.041153 CACTTGGAGGCCCAACAAC 58.959 57.895 0.00 0.00 46.94 3.32
2697 2844 1.528309 ACTTGGAGGCCCAACAACG 60.528 57.895 0.00 0.00 46.94 4.10
2698 2845 1.528309 CTTGGAGGCCCAACAACGT 60.528 57.895 0.00 0.00 46.94 3.99
2699 2846 1.515521 CTTGGAGGCCCAACAACGTC 61.516 60.000 0.00 0.00 46.94 4.34
2700 2847 1.990160 TTGGAGGCCCAACAACGTCT 61.990 55.000 0.00 0.00 46.94 4.18
2701 2848 1.122632 TGGAGGCCCAACAACGTCTA 61.123 55.000 0.00 0.00 40.09 2.59
2702 2849 0.672711 GGAGGCCCAACAACGTCTAC 60.673 60.000 0.00 0.00 0.00 2.59
2703 2850 0.034337 GAGGCCCAACAACGTCTACA 59.966 55.000 0.00 0.00 0.00 2.74
2704 2851 0.470766 AGGCCCAACAACGTCTACAA 59.529 50.000 0.00 0.00 0.00 2.41
2705 2852 0.872388 GGCCCAACAACGTCTACAAG 59.128 55.000 0.00 0.00 0.00 3.16
2706 2853 0.872388 GCCCAACAACGTCTACAAGG 59.128 55.000 0.00 0.00 0.00 3.61
2707 2854 1.541670 GCCCAACAACGTCTACAAGGA 60.542 52.381 0.00 0.00 0.00 3.36
2708 2855 2.413837 CCCAACAACGTCTACAAGGAG 58.586 52.381 0.00 0.00 0.00 3.69
2709 2856 2.036733 CCCAACAACGTCTACAAGGAGA 59.963 50.000 0.00 0.00 0.00 3.71
2710 2857 3.493699 CCCAACAACGTCTACAAGGAGAA 60.494 47.826 0.00 0.00 0.00 2.87
2711 2858 3.741344 CCAACAACGTCTACAAGGAGAAG 59.259 47.826 0.00 0.00 0.00 2.85
2712 2859 3.662247 ACAACGTCTACAAGGAGAAGG 57.338 47.619 0.48 0.00 30.13 3.46
2713 2860 2.963782 ACAACGTCTACAAGGAGAAGGT 59.036 45.455 0.48 0.00 30.13 3.50
2714 2861 3.387050 ACAACGTCTACAAGGAGAAGGTT 59.613 43.478 0.48 0.00 30.13 3.50
2715 2862 3.662247 ACGTCTACAAGGAGAAGGTTG 57.338 47.619 0.48 0.00 30.13 3.77
2716 2863 2.963782 ACGTCTACAAGGAGAAGGTTGT 59.036 45.455 0.48 0.00 40.08 3.32
2717 2864 3.243771 ACGTCTACAAGGAGAAGGTTGTG 60.244 47.826 0.48 0.00 37.46 3.33
2718 2865 3.243771 CGTCTACAAGGAGAAGGTTGTGT 60.244 47.826 0.00 0.00 37.46 3.72
2719 2866 4.704965 GTCTACAAGGAGAAGGTTGTGTT 58.295 43.478 0.00 0.00 37.46 3.32
2720 2867 4.511826 GTCTACAAGGAGAAGGTTGTGTTG 59.488 45.833 0.00 0.00 37.46 3.33
2721 2868 3.366052 ACAAGGAGAAGGTTGTGTTGT 57.634 42.857 0.00 0.00 35.55 3.32
2722 2869 4.497291 ACAAGGAGAAGGTTGTGTTGTA 57.503 40.909 0.00 0.00 35.55 2.41
2723 2870 4.451900 ACAAGGAGAAGGTTGTGTTGTAG 58.548 43.478 0.00 0.00 35.55 2.74
2724 2871 4.163458 ACAAGGAGAAGGTTGTGTTGTAGA 59.837 41.667 0.00 0.00 35.55 2.59
2725 2872 4.338379 AGGAGAAGGTTGTGTTGTAGAC 57.662 45.455 0.00 0.00 0.00 2.59
2726 2873 3.709653 AGGAGAAGGTTGTGTTGTAGACA 59.290 43.478 0.00 0.00 35.42 3.41
2727 2874 4.348168 AGGAGAAGGTTGTGTTGTAGACAT 59.652 41.667 0.00 0.00 41.10 3.06
2728 2875 4.691216 GGAGAAGGTTGTGTTGTAGACATC 59.309 45.833 0.00 0.00 41.10 3.06
2729 2876 5.290493 AGAAGGTTGTGTTGTAGACATCA 57.710 39.130 0.00 0.00 41.10 3.07
2730 2877 5.680619 AGAAGGTTGTGTTGTAGACATCAA 58.319 37.500 0.00 0.00 41.10 2.57
2731 2878 6.299141 AGAAGGTTGTGTTGTAGACATCAAT 58.701 36.000 0.00 0.00 41.10 2.57
2732 2879 6.772716 AGAAGGTTGTGTTGTAGACATCAATT 59.227 34.615 0.00 0.00 41.10 2.32
2733 2880 6.959639 AGGTTGTGTTGTAGACATCAATTT 57.040 33.333 0.00 0.00 41.10 1.82
2734 2881 7.346751 AGGTTGTGTTGTAGACATCAATTTT 57.653 32.000 0.00 0.00 41.10 1.82
2735 2882 7.425606 AGGTTGTGTTGTAGACATCAATTTTC 58.574 34.615 0.00 0.00 41.10 2.29
2736 2883 7.285401 AGGTTGTGTTGTAGACATCAATTTTCT 59.715 33.333 0.00 0.00 41.10 2.52
2737 2884 7.920682 GGTTGTGTTGTAGACATCAATTTTCTT 59.079 33.333 0.00 0.00 41.10 2.52
2738 2885 8.958043 GTTGTGTTGTAGACATCAATTTTCTTC 58.042 33.333 0.00 0.00 41.10 2.87
2739 2886 8.219546 TGTGTTGTAGACATCAATTTTCTTCA 57.780 30.769 0.00 0.00 41.10 3.02
2740 2887 8.849168 TGTGTTGTAGACATCAATTTTCTTCAT 58.151 29.630 0.00 0.00 41.10 2.57
2741 2888 9.121517 GTGTTGTAGACATCAATTTTCTTCATG 57.878 33.333 0.00 0.00 41.10 3.07
2742 2889 7.809331 TGTTGTAGACATCAATTTTCTTCATGC 59.191 33.333 0.00 0.00 32.00 4.06
2743 2890 6.545508 TGTAGACATCAATTTTCTTCATGCG 58.454 36.000 0.00 0.00 0.00 4.73
2744 2891 4.418392 AGACATCAATTTTCTTCATGCGC 58.582 39.130 0.00 0.00 0.00 6.09
2745 2892 4.157289 AGACATCAATTTTCTTCATGCGCT 59.843 37.500 9.73 0.00 0.00 5.92
2746 2893 4.813027 ACATCAATTTTCTTCATGCGCTT 58.187 34.783 9.73 0.00 0.00 4.68
2747 2894 5.232463 ACATCAATTTTCTTCATGCGCTTT 58.768 33.333 9.73 0.00 0.00 3.51
2748 2895 6.389091 ACATCAATTTTCTTCATGCGCTTTA 58.611 32.000 9.73 0.00 0.00 1.85
2749 2896 6.308766 ACATCAATTTTCTTCATGCGCTTTAC 59.691 34.615 9.73 0.00 0.00 2.01
2750 2897 5.767269 TCAATTTTCTTCATGCGCTTTACA 58.233 33.333 9.73 0.00 0.00 2.41
2751 2898 5.629020 TCAATTTTCTTCATGCGCTTTACAC 59.371 36.000 9.73 0.00 0.00 2.90
2752 2899 3.552604 TTTCTTCATGCGCTTTACACC 57.447 42.857 9.73 0.00 0.00 4.16
2753 2900 2.177394 TCTTCATGCGCTTTACACCA 57.823 45.000 9.73 0.00 0.00 4.17
2754 2901 2.499197 TCTTCATGCGCTTTACACCAA 58.501 42.857 9.73 0.00 0.00 3.67
2755 2902 3.081061 TCTTCATGCGCTTTACACCAAT 58.919 40.909 9.73 0.00 0.00 3.16
2756 2903 4.257731 TCTTCATGCGCTTTACACCAATA 58.742 39.130 9.73 0.00 0.00 1.90
2757 2904 4.881273 TCTTCATGCGCTTTACACCAATAT 59.119 37.500 9.73 0.00 0.00 1.28
2758 2905 4.550577 TCATGCGCTTTACACCAATATG 57.449 40.909 9.73 0.00 0.00 1.78
2759 2906 4.195416 TCATGCGCTTTACACCAATATGA 58.805 39.130 9.73 1.33 0.00 2.15
2760 2907 4.035091 TCATGCGCTTTACACCAATATGAC 59.965 41.667 9.73 0.00 0.00 3.06
2761 2908 2.680841 TGCGCTTTACACCAATATGACC 59.319 45.455 9.73 0.00 0.00 4.02
2762 2909 2.943033 GCGCTTTACACCAATATGACCT 59.057 45.455 0.00 0.00 0.00 3.85
2763 2910 4.124238 GCGCTTTACACCAATATGACCTA 58.876 43.478 0.00 0.00 0.00 3.08
2764 2911 4.573201 GCGCTTTACACCAATATGACCTAA 59.427 41.667 0.00 0.00 0.00 2.69
2765 2912 5.065474 GCGCTTTACACCAATATGACCTAAA 59.935 40.000 0.00 0.00 0.00 1.85
2766 2913 6.483687 CGCTTTACACCAATATGACCTAAAC 58.516 40.000 0.00 0.00 0.00 2.01
2767 2914 6.092944 CGCTTTACACCAATATGACCTAAACA 59.907 38.462 0.00 0.00 0.00 2.83
2768 2915 7.361371 CGCTTTACACCAATATGACCTAAACAA 60.361 37.037 0.00 0.00 0.00 2.83
2769 2916 7.753580 GCTTTACACCAATATGACCTAAACAAC 59.246 37.037 0.00 0.00 0.00 3.32
2770 2917 8.693120 TTTACACCAATATGACCTAAACAACA 57.307 30.769 0.00 0.00 0.00 3.33
2771 2918 6.817765 ACACCAATATGACCTAAACAACAG 57.182 37.500 0.00 0.00 0.00 3.16
2772 2919 6.303839 ACACCAATATGACCTAAACAACAGT 58.696 36.000 0.00 0.00 0.00 3.55
2773 2920 6.206634 ACACCAATATGACCTAAACAACAGTG 59.793 38.462 0.00 0.00 0.00 3.66
2774 2921 5.183140 ACCAATATGACCTAAACAACAGTGC 59.817 40.000 0.00 0.00 0.00 4.40
2775 2922 5.393027 CCAATATGACCTAAACAACAGTGCC 60.393 44.000 0.00 0.00 0.00 5.01
2776 2923 2.719531 TGACCTAAACAACAGTGCCA 57.280 45.000 0.00 0.00 0.00 4.92
2777 2924 2.294074 TGACCTAAACAACAGTGCCAC 58.706 47.619 0.00 0.00 0.00 5.01
2778 2925 2.294074 GACCTAAACAACAGTGCCACA 58.706 47.619 0.00 0.00 0.00 4.17
2779 2926 2.685897 GACCTAAACAACAGTGCCACAA 59.314 45.455 0.00 0.00 0.00 3.33
2780 2927 3.093057 ACCTAAACAACAGTGCCACAAA 58.907 40.909 0.00 0.00 0.00 2.83
2781 2928 3.704061 ACCTAAACAACAGTGCCACAAAT 59.296 39.130 0.00 0.00 0.00 2.32
2782 2929 4.890581 ACCTAAACAACAGTGCCACAAATA 59.109 37.500 0.00 0.00 0.00 1.40
2783 2930 5.361285 ACCTAAACAACAGTGCCACAAATAA 59.639 36.000 0.00 0.00 0.00 1.40
2784 2931 5.920273 CCTAAACAACAGTGCCACAAATAAG 59.080 40.000 0.00 0.00 0.00 1.73
2785 2932 5.337578 AAACAACAGTGCCACAAATAAGT 57.662 34.783 0.00 0.00 0.00 2.24
2786 2933 5.337578 AACAACAGTGCCACAAATAAGTT 57.662 34.783 0.00 0.00 0.00 2.66
2787 2934 4.681744 ACAACAGTGCCACAAATAAGTTG 58.318 39.130 0.00 4.93 43.43 3.16
2788 2935 3.369546 ACAGTGCCACAAATAAGTTGC 57.630 42.857 0.00 0.00 41.31 4.17
2789 2936 2.692557 ACAGTGCCACAAATAAGTTGCA 59.307 40.909 0.00 0.00 41.31 4.08
2794 2941 5.309323 TGCCACAAATAAGTTGCACTATC 57.691 39.130 0.00 0.00 41.31 2.08
2795 2942 4.764308 TGCCACAAATAAGTTGCACTATCA 59.236 37.500 0.00 0.00 41.31 2.15
2796 2943 5.418524 TGCCACAAATAAGTTGCACTATCAT 59.581 36.000 0.00 0.00 41.31 2.45
2797 2944 6.071447 TGCCACAAATAAGTTGCACTATCATT 60.071 34.615 0.00 0.00 41.31 2.57
2798 2945 7.121907 TGCCACAAATAAGTTGCACTATCATTA 59.878 33.333 0.00 0.00 41.31 1.90
2799 2946 8.137437 GCCACAAATAAGTTGCACTATCATTAT 58.863 33.333 0.00 0.00 41.31 1.28
2808 2955 9.573133 AAGTTGCACTATCATTATTAACTTTGC 57.427 29.630 0.00 0.00 34.53 3.68
2809 2956 8.739039 AGTTGCACTATCATTATTAACTTTGCA 58.261 29.630 0.00 0.00 34.59 4.08
2810 2957 9.520204 GTTGCACTATCATTATTAACTTTGCAT 57.480 29.630 0.00 0.00 36.24 3.96
2811 2958 9.734620 TTGCACTATCATTATTAACTTTGCATC 57.265 29.630 0.00 0.00 36.24 3.91
2812 2959 9.123902 TGCACTATCATTATTAACTTTGCATCT 57.876 29.630 0.00 0.00 31.59 2.90
2813 2960 9.956720 GCACTATCATTATTAACTTTGCATCTT 57.043 29.630 0.00 0.00 0.00 2.40
2818 2965 8.477984 TCATTATTAACTTTGCATCTTTTGGC 57.522 30.769 0.00 0.00 0.00 4.52
2819 2966 8.313292 TCATTATTAACTTTGCATCTTTTGGCT 58.687 29.630 0.00 0.00 0.00 4.75
2820 2967 8.938906 CATTATTAACTTTGCATCTTTTGGCTT 58.061 29.630 0.00 0.00 0.00 4.35
2821 2968 8.532977 TTATTAACTTTGCATCTTTTGGCTTC 57.467 30.769 0.00 0.00 0.00 3.86
2822 2969 4.405116 AACTTTGCATCTTTTGGCTTCA 57.595 36.364 0.00 0.00 0.00 3.02
2823 2970 4.405116 ACTTTGCATCTTTTGGCTTCAA 57.595 36.364 0.00 0.00 0.00 2.69
2824 2971 4.964593 ACTTTGCATCTTTTGGCTTCAAT 58.035 34.783 0.00 0.00 0.00 2.57
2825 2972 6.100404 ACTTTGCATCTTTTGGCTTCAATA 57.900 33.333 0.00 0.00 0.00 1.90
2826 2973 6.704310 ACTTTGCATCTTTTGGCTTCAATAT 58.296 32.000 0.00 0.00 0.00 1.28
2827 2974 7.163441 ACTTTGCATCTTTTGGCTTCAATATT 58.837 30.769 0.00 0.00 0.00 1.28
2828 2975 8.313292 ACTTTGCATCTTTTGGCTTCAATATTA 58.687 29.630 0.00 0.00 0.00 0.98
2829 2976 9.321562 CTTTGCATCTTTTGGCTTCAATATTAT 57.678 29.630 0.00 0.00 0.00 1.28
2830 2977 8.651391 TTGCATCTTTTGGCTTCAATATTATG 57.349 30.769 0.00 0.00 0.00 1.90
2831 2978 8.009622 TGCATCTTTTGGCTTCAATATTATGA 57.990 30.769 0.00 0.00 0.00 2.15
2832 2979 8.476447 TGCATCTTTTGGCTTCAATATTATGAA 58.524 29.630 0.00 0.00 37.70 2.57
2833 2980 9.485206 GCATCTTTTGGCTTCAATATTATGAAT 57.515 29.630 0.00 0.00 38.55 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 88 6.992123 CCATTAGTAGCAGGTATTCAACATCA 59.008 38.462 0.00 0.00 0.00 3.07
366 383 7.739825 TGGCTAAATAAGAGATGCTACTCATT 58.260 34.615 11.81 6.92 39.14 2.57
400 417 6.364165 CACATGTCTGCTTAAGTGAAAATTGG 59.636 38.462 4.02 0.00 0.00 3.16
428 445 1.698506 ATGCGGGAACTGAAAACCAA 58.301 45.000 0.00 0.00 36.31 3.67
443 460 1.995484 CTTATCACCGATGCCTATGCG 59.005 52.381 0.00 0.00 41.78 4.73
552 569 7.048629 TCAAACAATGGCTAACTGAATTCAA 57.951 32.000 9.88 0.00 0.00 2.69
590 607 0.698238 ACCCCAGTACACATGCATGT 59.302 50.000 26.61 26.61 42.84 3.21
703 720 6.206243 CAGTCCAATTGAACAAGATCTTGAGT 59.794 38.462 36.15 24.51 42.93 3.41
704 721 6.429078 TCAGTCCAATTGAACAAGATCTTGAG 59.571 38.462 36.15 15.83 42.93 3.02
854 904 2.346766 AACAGCAGTGTGACCATCAA 57.653 45.000 0.00 0.00 36.84 2.57
913 963 8.082242 GCAAAACAATAGTGTGACCTAAAGAAT 58.918 33.333 0.00 0.00 38.27 2.40
914 964 7.284489 AGCAAAACAATAGTGTGACCTAAAGAA 59.716 33.333 0.00 0.00 38.27 2.52
915 965 6.770785 AGCAAAACAATAGTGTGACCTAAAGA 59.229 34.615 0.00 0.00 38.27 2.52
919 969 5.238432 CACAGCAAAACAATAGTGTGACCTA 59.762 40.000 0.00 0.00 38.27 3.08
930 986 6.843069 GTTTATCAACCACAGCAAAACAAT 57.157 33.333 0.00 0.00 0.00 2.71
1043 1099 8.255111 ACAAGAGTATCATCAGGATCATTACA 57.745 34.615 0.00 0.00 37.82 2.41
1121 1177 3.580458 AGCTATATTGCCCAGTAGGACTG 59.420 47.826 5.48 0.00 45.53 3.51
1170 1230 1.070134 GGTAAGCATCATGGCCTCGTA 59.930 52.381 3.32 0.00 0.00 3.43
1579 1655 5.879777 CCAAAACTTCCAGAAATGGTTGTTT 59.120 36.000 11.53 11.53 37.20 2.83
1617 1693 4.774200 ACCGTAATAACCACAAGGACTAGT 59.226 41.667 0.00 0.00 38.69 2.57
1836 1929 8.675705 TGATACCATCACAACATATAAACCTG 57.324 34.615 0.00 0.00 33.59 4.00
2070 2193 6.320418 ACACTCCATTTCCTTCGTTTTTAGTT 59.680 34.615 0.00 0.00 0.00 2.24
2080 2205 5.470368 GCCTTTTTACACTCCATTTCCTTC 58.530 41.667 0.00 0.00 0.00 3.46
2295 2428 8.350722 CCAATTGAGAAGGTCATTGATAAGATG 58.649 37.037 7.12 0.00 34.17 2.90
2386 2520 3.172229 TGCCTACTGTTTTGTTTTGGC 57.828 42.857 0.00 0.00 39.53 4.52
2439 2586 9.415544 GTAAACTGAAATTAACGACCTTCTCTA 57.584 33.333 0.00 0.00 0.00 2.43
2524 2671 3.926616 ACTATTGGTCACTGAAAGGTCG 58.073 45.455 0.00 0.00 39.30 4.79
2584 2731 4.262891 AGGATGAAGATGGTCTCTCTCA 57.737 45.455 0.00 0.00 31.03 3.27
2585 2732 4.215399 CGTAGGATGAAGATGGTCTCTCTC 59.785 50.000 0.00 0.00 31.03 3.20
2586 2733 4.141287 CGTAGGATGAAGATGGTCTCTCT 58.859 47.826 0.00 0.00 31.03 3.10
2587 2734 3.305064 GCGTAGGATGAAGATGGTCTCTC 60.305 52.174 0.00 0.00 31.03 3.20
2588 2735 2.625790 GCGTAGGATGAAGATGGTCTCT 59.374 50.000 0.00 0.00 34.96 3.10
2589 2736 2.288518 GGCGTAGGATGAAGATGGTCTC 60.289 54.545 0.00 0.00 0.00 3.36
2590 2737 1.689273 GGCGTAGGATGAAGATGGTCT 59.311 52.381 0.00 0.00 0.00 3.85
2591 2738 1.689273 AGGCGTAGGATGAAGATGGTC 59.311 52.381 0.00 0.00 0.00 4.02
2592 2739 1.689273 GAGGCGTAGGATGAAGATGGT 59.311 52.381 0.00 0.00 0.00 3.55
2593 2740 1.001406 GGAGGCGTAGGATGAAGATGG 59.999 57.143 0.00 0.00 0.00 3.51
2594 2741 1.001406 GGGAGGCGTAGGATGAAGATG 59.999 57.143 0.00 0.00 0.00 2.90
2595 2742 1.343069 GGGAGGCGTAGGATGAAGAT 58.657 55.000 0.00 0.00 0.00 2.40
2596 2743 0.032515 TGGGAGGCGTAGGATGAAGA 60.033 55.000 0.00 0.00 0.00 2.87
2597 2744 0.105039 GTGGGAGGCGTAGGATGAAG 59.895 60.000 0.00 0.00 0.00 3.02
2598 2745 1.672854 CGTGGGAGGCGTAGGATGAA 61.673 60.000 0.00 0.00 0.00 2.57
2599 2746 2.125326 CGTGGGAGGCGTAGGATGA 61.125 63.158 0.00 0.00 0.00 2.92
2600 2747 2.417516 CGTGGGAGGCGTAGGATG 59.582 66.667 0.00 0.00 0.00 3.51
2601 2748 2.658321 ATCCGTGGGAGGCGTAGGAT 62.658 60.000 0.00 0.00 34.05 3.24
2602 2749 2.866523 AATCCGTGGGAGGCGTAGGA 62.867 60.000 0.00 0.00 34.05 2.94
2603 2750 2.432300 AATCCGTGGGAGGCGTAGG 61.432 63.158 0.00 0.00 34.05 3.18
2604 2751 1.227263 CAATCCGTGGGAGGCGTAG 60.227 63.158 0.00 0.00 34.05 3.51
2605 2752 1.046472 ATCAATCCGTGGGAGGCGTA 61.046 55.000 0.00 0.00 34.05 4.42
2606 2753 1.046472 TATCAATCCGTGGGAGGCGT 61.046 55.000 0.00 0.00 34.05 5.68
2607 2754 0.105964 TTATCAATCCGTGGGAGGCG 59.894 55.000 0.00 0.00 34.05 5.52
2608 2755 1.947456 GTTTATCAATCCGTGGGAGGC 59.053 52.381 0.00 0.00 34.05 4.70
2609 2756 2.172717 AGGTTTATCAATCCGTGGGAGG 59.827 50.000 0.00 0.00 34.05 4.30
2610 2757 3.560636 AGGTTTATCAATCCGTGGGAG 57.439 47.619 0.00 0.00 34.05 4.30
2611 2758 4.141574 CCTAAGGTTTATCAATCCGTGGGA 60.142 45.833 0.00 0.00 34.51 4.37
2612 2759 4.134563 CCTAAGGTTTATCAATCCGTGGG 58.865 47.826 0.00 0.00 0.00 4.61
2613 2760 4.777463 ACCTAAGGTTTATCAATCCGTGG 58.223 43.478 0.00 0.00 27.29 4.94
2614 2761 5.424757 TGACCTAAGGTTTATCAATCCGTG 58.575 41.667 0.00 0.00 35.25 4.94
2615 2762 5.687166 TGACCTAAGGTTTATCAATCCGT 57.313 39.130 0.00 0.00 35.25 4.69
2616 2763 5.701290 GGATGACCTAAGGTTTATCAATCCG 59.299 44.000 0.00 0.00 35.25 4.18
2617 2764 6.486993 GTGGATGACCTAAGGTTTATCAATCC 59.513 42.308 0.00 0.00 35.25 3.01
2618 2765 7.283329 AGTGGATGACCTAAGGTTTATCAATC 58.717 38.462 0.00 0.00 35.25 2.67
2619 2766 7.213178 AGTGGATGACCTAAGGTTTATCAAT 57.787 36.000 0.00 0.00 35.25 2.57
2620 2767 6.636454 AGTGGATGACCTAAGGTTTATCAA 57.364 37.500 0.00 0.00 35.25 2.57
2621 2768 6.214615 TCAAGTGGATGACCTAAGGTTTATCA 59.785 38.462 0.00 0.00 35.25 2.15
2622 2769 6.650120 TCAAGTGGATGACCTAAGGTTTATC 58.350 40.000 0.00 0.00 35.25 1.75
2623 2770 6.353082 CCTCAAGTGGATGACCTAAGGTTTAT 60.353 42.308 0.00 0.00 35.25 1.40
2624 2771 5.045869 CCTCAAGTGGATGACCTAAGGTTTA 60.046 44.000 0.00 0.00 35.25 2.01
2625 2772 4.263506 CCTCAAGTGGATGACCTAAGGTTT 60.264 45.833 0.00 0.00 35.25 3.27
2626 2773 3.264450 CCTCAAGTGGATGACCTAAGGTT 59.736 47.826 0.00 0.00 35.25 3.50
2627 2774 2.840651 CCTCAAGTGGATGACCTAAGGT 59.159 50.000 0.00 0.00 39.44 3.50
2628 2775 2.171448 CCCTCAAGTGGATGACCTAAGG 59.829 54.545 0.00 0.00 37.04 2.69
2629 2776 3.107601 TCCCTCAAGTGGATGACCTAAG 58.892 50.000 0.00 0.00 37.04 2.18
2630 2777 3.199442 TCCCTCAAGTGGATGACCTAA 57.801 47.619 0.00 0.00 37.04 2.69
2631 2778 2.940514 TCCCTCAAGTGGATGACCTA 57.059 50.000 0.00 0.00 37.04 3.08
2632 2779 2.044793 TTCCCTCAAGTGGATGACCT 57.955 50.000 0.00 0.00 37.04 3.85
2633 2780 2.879103 TTTCCCTCAAGTGGATGACC 57.121 50.000 0.00 0.00 0.00 4.02
2634 2781 4.082026 CCAAATTTCCCTCAAGTGGATGAC 60.082 45.833 0.00 0.00 0.00 3.06
2635 2782 4.088634 CCAAATTTCCCTCAAGTGGATGA 58.911 43.478 0.00 0.00 0.00 2.92
2636 2783 3.834231 ACCAAATTTCCCTCAAGTGGATG 59.166 43.478 0.00 0.00 0.00 3.51
2637 2784 4.132122 ACCAAATTTCCCTCAAGTGGAT 57.868 40.909 0.00 0.00 0.00 3.41
2638 2785 3.611025 ACCAAATTTCCCTCAAGTGGA 57.389 42.857 0.00 0.00 0.00 4.02
2639 2786 4.218417 CAGTACCAAATTTCCCTCAAGTGG 59.782 45.833 0.00 0.00 0.00 4.00
2640 2787 4.827284 ACAGTACCAAATTTCCCTCAAGTG 59.173 41.667 0.00 0.00 0.00 3.16
2641 2788 5.061721 ACAGTACCAAATTTCCCTCAAGT 57.938 39.130 0.00 0.00 0.00 3.16
2642 2789 4.459337 GGACAGTACCAAATTTCCCTCAAG 59.541 45.833 0.00 0.00 0.00 3.02
2643 2790 4.105697 AGGACAGTACCAAATTTCCCTCAA 59.894 41.667 0.00 0.00 0.00 3.02
2644 2791 3.655777 AGGACAGTACCAAATTTCCCTCA 59.344 43.478 0.00 0.00 0.00 3.86
2645 2792 4.302559 AGGACAGTACCAAATTTCCCTC 57.697 45.455 0.00 0.00 0.00 4.30
2646 2793 4.600111 TGTAGGACAGTACCAAATTTCCCT 59.400 41.667 0.00 0.00 0.00 4.20
2647 2794 4.913784 TGTAGGACAGTACCAAATTTCCC 58.086 43.478 0.00 0.00 0.00 3.97
2648 2795 6.294342 GGTTTGTAGGACAGTACCAAATTTCC 60.294 42.308 7.65 0.00 35.78 3.13
2649 2796 6.489022 AGGTTTGTAGGACAGTACCAAATTTC 59.511 38.462 12.63 0.00 37.20 2.17
2650 2797 6.370453 AGGTTTGTAGGACAGTACCAAATTT 58.630 36.000 12.63 0.00 37.20 1.82
2651 2798 5.948842 AGGTTTGTAGGACAGTACCAAATT 58.051 37.500 12.63 0.00 37.20 1.82
2652 2799 5.309806 AGAGGTTTGTAGGACAGTACCAAAT 59.690 40.000 12.63 0.00 37.20 2.32
2653 2800 4.657039 AGAGGTTTGTAGGACAGTACCAAA 59.343 41.667 12.63 0.00 37.20 3.28
2654 2801 4.039973 CAGAGGTTTGTAGGACAGTACCAA 59.960 45.833 12.63 0.00 37.20 3.67
2655 2802 3.576982 CAGAGGTTTGTAGGACAGTACCA 59.423 47.826 12.63 0.00 37.20 3.25
2656 2803 3.616802 GCAGAGGTTTGTAGGACAGTACC 60.617 52.174 0.00 5.35 35.88 3.34
2657 2804 3.006537 TGCAGAGGTTTGTAGGACAGTAC 59.993 47.826 0.00 0.00 0.00 2.73
2658 2805 3.006537 GTGCAGAGGTTTGTAGGACAGTA 59.993 47.826 0.00 0.00 0.00 2.74
2659 2806 2.047061 TGCAGAGGTTTGTAGGACAGT 58.953 47.619 0.00 0.00 0.00 3.55
2660 2807 2.037772 AGTGCAGAGGTTTGTAGGACAG 59.962 50.000 0.00 0.00 0.00 3.51
2661 2808 2.047061 AGTGCAGAGGTTTGTAGGACA 58.953 47.619 0.00 0.00 0.00 4.02
2662 2809 2.808543 CAAGTGCAGAGGTTTGTAGGAC 59.191 50.000 0.00 0.00 0.00 3.85
2663 2810 2.224523 CCAAGTGCAGAGGTTTGTAGGA 60.225 50.000 0.00 0.00 0.00 2.94
2664 2811 2.154462 CCAAGTGCAGAGGTTTGTAGG 58.846 52.381 0.00 0.00 0.00 3.18
2665 2812 3.070018 CTCCAAGTGCAGAGGTTTGTAG 58.930 50.000 0.00 0.00 0.00 2.74
2666 2813 2.224523 CCTCCAAGTGCAGAGGTTTGTA 60.225 50.000 10.81 0.00 44.01 2.41
2667 2814 1.477558 CCTCCAAGTGCAGAGGTTTGT 60.478 52.381 10.81 0.00 44.01 2.83
2668 2815 1.242076 CCTCCAAGTGCAGAGGTTTG 58.758 55.000 10.81 0.88 44.01 2.93
2669 2816 3.733709 CCTCCAAGTGCAGAGGTTT 57.266 52.632 10.81 0.00 44.01 3.27
2673 2820 2.045536 GGGCCTCCAAGTGCAGAG 60.046 66.667 0.84 0.00 0.00 3.35
2674 2821 2.853542 TGGGCCTCCAAGTGCAGA 60.854 61.111 4.53 0.00 40.73 4.26
2682 2829 1.122632 TAGACGTTGTTGGGCCTCCA 61.123 55.000 4.53 0.00 42.25 3.86
2683 2830 0.672711 GTAGACGTTGTTGGGCCTCC 60.673 60.000 4.53 0.00 0.00 4.30
2684 2831 0.034337 TGTAGACGTTGTTGGGCCTC 59.966 55.000 4.53 0.00 0.00 4.70
2685 2832 0.470766 TTGTAGACGTTGTTGGGCCT 59.529 50.000 4.53 0.00 0.00 5.19
2686 2833 0.872388 CTTGTAGACGTTGTTGGGCC 59.128 55.000 0.00 0.00 0.00 5.80
2687 2834 0.872388 CCTTGTAGACGTTGTTGGGC 59.128 55.000 0.00 0.00 0.00 5.36
2688 2835 2.036733 TCTCCTTGTAGACGTTGTTGGG 59.963 50.000 0.00 0.00 0.00 4.12
2689 2836 3.380479 TCTCCTTGTAGACGTTGTTGG 57.620 47.619 0.00 0.00 0.00 3.77
2690 2837 3.741344 CCTTCTCCTTGTAGACGTTGTTG 59.259 47.826 0.00 0.00 0.00 3.33
2691 2838 3.387050 ACCTTCTCCTTGTAGACGTTGTT 59.613 43.478 0.00 0.00 0.00 2.83
2692 2839 2.963782 ACCTTCTCCTTGTAGACGTTGT 59.036 45.455 0.00 0.00 0.00 3.32
2693 2840 3.662247 ACCTTCTCCTTGTAGACGTTG 57.338 47.619 0.00 0.00 0.00 4.10
2694 2841 3.387050 ACAACCTTCTCCTTGTAGACGTT 59.613 43.478 0.00 0.00 0.00 3.99
2695 2842 2.963782 ACAACCTTCTCCTTGTAGACGT 59.036 45.455 0.00 0.00 0.00 4.34
2696 2843 3.243771 ACACAACCTTCTCCTTGTAGACG 60.244 47.826 0.00 0.00 0.00 4.18
2697 2844 4.338379 ACACAACCTTCTCCTTGTAGAC 57.662 45.455 0.00 0.00 0.00 2.59
2698 2845 4.163458 ACAACACAACCTTCTCCTTGTAGA 59.837 41.667 0.00 0.00 0.00 2.59
2699 2846 4.451900 ACAACACAACCTTCTCCTTGTAG 58.548 43.478 0.00 0.00 0.00 2.74
2700 2847 4.497291 ACAACACAACCTTCTCCTTGTA 57.503 40.909 0.00 0.00 0.00 2.41
2701 2848 3.366052 ACAACACAACCTTCTCCTTGT 57.634 42.857 0.00 0.00 0.00 3.16
2702 2849 4.511826 GTCTACAACACAACCTTCTCCTTG 59.488 45.833 0.00 0.00 0.00 3.61
2703 2850 4.163458 TGTCTACAACACAACCTTCTCCTT 59.837 41.667 0.00 0.00 31.20 3.36
2704 2851 3.709653 TGTCTACAACACAACCTTCTCCT 59.290 43.478 0.00 0.00 31.20 3.69
2705 2852 4.067972 TGTCTACAACACAACCTTCTCC 57.932 45.455 0.00 0.00 31.20 3.71
2706 2853 5.297547 TGATGTCTACAACACAACCTTCTC 58.702 41.667 0.00 0.00 41.75 2.87
2707 2854 5.290493 TGATGTCTACAACACAACCTTCT 57.710 39.130 0.00 0.00 41.75 2.85
2708 2855 6.560253 ATTGATGTCTACAACACAACCTTC 57.440 37.500 0.00 0.00 41.75 3.46
2709 2856 6.959639 AATTGATGTCTACAACACAACCTT 57.040 33.333 0.00 0.00 41.75 3.50
2710 2857 6.959639 AAATTGATGTCTACAACACAACCT 57.040 33.333 0.00 0.00 41.75 3.50
2711 2858 7.425606 AGAAAATTGATGTCTACAACACAACC 58.574 34.615 0.00 0.00 41.75 3.77
2712 2859 8.856490 AAGAAAATTGATGTCTACAACACAAC 57.144 30.769 0.00 0.00 41.75 3.32
2713 2860 8.681806 TGAAGAAAATTGATGTCTACAACACAA 58.318 29.630 0.00 0.00 41.75 3.33
2714 2861 8.219546 TGAAGAAAATTGATGTCTACAACACA 57.780 30.769 0.00 0.00 41.75 3.72
2715 2862 9.121517 CATGAAGAAAATTGATGTCTACAACAC 57.878 33.333 0.00 0.00 41.75 3.32
2716 2863 7.809331 GCATGAAGAAAATTGATGTCTACAACA 59.191 33.333 0.00 0.00 43.51 3.33
2717 2864 7.007725 CGCATGAAGAAAATTGATGTCTACAAC 59.992 37.037 0.00 0.00 0.00 3.32
2718 2865 7.022979 CGCATGAAGAAAATTGATGTCTACAA 58.977 34.615 0.00 0.00 0.00 2.41
2719 2866 6.545508 CGCATGAAGAAAATTGATGTCTACA 58.454 36.000 0.00 0.00 0.00 2.74
2720 2867 5.453587 GCGCATGAAGAAAATTGATGTCTAC 59.546 40.000 0.30 0.00 0.00 2.59
2721 2868 5.355071 AGCGCATGAAGAAAATTGATGTCTA 59.645 36.000 11.47 0.00 0.00 2.59
2722 2869 4.157289 AGCGCATGAAGAAAATTGATGTCT 59.843 37.500 11.47 0.00 0.00 3.41
2723 2870 4.418392 AGCGCATGAAGAAAATTGATGTC 58.582 39.130 11.47 0.00 0.00 3.06
2724 2871 4.445452 AGCGCATGAAGAAAATTGATGT 57.555 36.364 11.47 0.00 0.00 3.06
2725 2872 5.773239 AAAGCGCATGAAGAAAATTGATG 57.227 34.783 11.47 0.00 0.00 3.07
2726 2873 6.308766 GTGTAAAGCGCATGAAGAAAATTGAT 59.691 34.615 11.47 0.00 0.00 2.57
2727 2874 5.629020 GTGTAAAGCGCATGAAGAAAATTGA 59.371 36.000 11.47 0.00 0.00 2.57
2728 2875 5.164061 GGTGTAAAGCGCATGAAGAAAATTG 60.164 40.000 11.47 0.00 0.00 2.32
2729 2876 4.923281 GGTGTAAAGCGCATGAAGAAAATT 59.077 37.500 11.47 0.00 0.00 1.82
2730 2877 4.022416 TGGTGTAAAGCGCATGAAGAAAAT 60.022 37.500 11.47 0.00 0.00 1.82
2731 2878 3.316588 TGGTGTAAAGCGCATGAAGAAAA 59.683 39.130 11.47 0.00 0.00 2.29
2732 2879 2.881513 TGGTGTAAAGCGCATGAAGAAA 59.118 40.909 11.47 0.00 0.00 2.52
2733 2880 2.499197 TGGTGTAAAGCGCATGAAGAA 58.501 42.857 11.47 0.00 0.00 2.52
2734 2881 2.177394 TGGTGTAAAGCGCATGAAGA 57.823 45.000 11.47 0.00 0.00 2.87
2735 2882 2.987413 TTGGTGTAAAGCGCATGAAG 57.013 45.000 11.47 0.00 0.00 3.02
2736 2883 4.637977 TCATATTGGTGTAAAGCGCATGAA 59.362 37.500 11.47 0.00 0.00 2.57
2737 2884 4.035091 GTCATATTGGTGTAAAGCGCATGA 59.965 41.667 11.47 1.94 0.00 3.07
2738 2885 4.282068 GTCATATTGGTGTAAAGCGCATG 58.718 43.478 11.47 0.00 0.00 4.06
2739 2886 3.315191 GGTCATATTGGTGTAAAGCGCAT 59.685 43.478 11.47 0.00 0.00 4.73
2740 2887 2.680841 GGTCATATTGGTGTAAAGCGCA 59.319 45.455 11.47 0.00 0.00 6.09
2741 2888 2.943033 AGGTCATATTGGTGTAAAGCGC 59.057 45.455 0.00 0.00 0.00 5.92
2742 2889 6.092944 TGTTTAGGTCATATTGGTGTAAAGCG 59.907 38.462 0.00 0.00 0.00 4.68
2743 2890 7.385778 TGTTTAGGTCATATTGGTGTAAAGC 57.614 36.000 0.00 0.00 0.00 3.51
2744 2891 8.788806 TGTTGTTTAGGTCATATTGGTGTAAAG 58.211 33.333 0.00 0.00 0.00 1.85
2745 2892 8.693120 TGTTGTTTAGGTCATATTGGTGTAAA 57.307 30.769 0.00 0.00 0.00 2.01
2746 2893 7.940137 ACTGTTGTTTAGGTCATATTGGTGTAA 59.060 33.333 0.00 0.00 0.00 2.41
2747 2894 7.389330 CACTGTTGTTTAGGTCATATTGGTGTA 59.611 37.037 0.00 0.00 0.00 2.90
2748 2895 6.206634 CACTGTTGTTTAGGTCATATTGGTGT 59.793 38.462 0.00 0.00 0.00 4.16
2749 2896 6.611381 CACTGTTGTTTAGGTCATATTGGTG 58.389 40.000 0.00 0.00 0.00 4.17
2750 2897 5.183140 GCACTGTTGTTTAGGTCATATTGGT 59.817 40.000 0.00 0.00 0.00 3.67
2751 2898 5.393027 GGCACTGTTGTTTAGGTCATATTGG 60.393 44.000 0.00 0.00 0.00 3.16
2752 2899 5.182950 TGGCACTGTTGTTTAGGTCATATTG 59.817 40.000 0.00 0.00 0.00 1.90
2753 2900 5.183140 GTGGCACTGTTGTTTAGGTCATATT 59.817 40.000 11.13 0.00 0.00 1.28
2754 2901 4.700213 GTGGCACTGTTGTTTAGGTCATAT 59.300 41.667 11.13 0.00 0.00 1.78
2755 2902 4.069304 GTGGCACTGTTGTTTAGGTCATA 58.931 43.478 11.13 0.00 0.00 2.15
2756 2903 2.884639 GTGGCACTGTTGTTTAGGTCAT 59.115 45.455 11.13 0.00 0.00 3.06
2757 2904 2.294074 GTGGCACTGTTGTTTAGGTCA 58.706 47.619 11.13 0.00 0.00 4.02
2758 2905 2.294074 TGTGGCACTGTTGTTTAGGTC 58.706 47.619 19.83 0.00 0.00 3.85
2759 2906 2.428544 TGTGGCACTGTTGTTTAGGT 57.571 45.000 19.83 0.00 0.00 3.08
2760 2907 3.791973 TTTGTGGCACTGTTGTTTAGG 57.208 42.857 19.83 0.00 0.00 2.69
2761 2908 6.503524 ACTTATTTGTGGCACTGTTGTTTAG 58.496 36.000 19.83 8.27 0.00 1.85
2762 2909 6.458232 ACTTATTTGTGGCACTGTTGTTTA 57.542 33.333 19.83 0.00 0.00 2.01
2763 2910 5.337578 ACTTATTTGTGGCACTGTTGTTT 57.662 34.783 19.83 0.00 0.00 2.83
2764 2911 5.108517 CAACTTATTTGTGGCACTGTTGTT 58.891 37.500 19.83 12.55 31.85 2.83
2765 2912 4.681744 CAACTTATTTGTGGCACTGTTGT 58.318 39.130 19.83 7.38 31.85 3.32
2766 2913 3.490526 GCAACTTATTTGTGGCACTGTTG 59.509 43.478 19.83 20.35 36.89 3.33
2767 2914 3.131933 TGCAACTTATTTGTGGCACTGTT 59.868 39.130 19.83 10.63 41.46 3.16
2768 2915 2.692557 TGCAACTTATTTGTGGCACTGT 59.307 40.909 19.83 7.17 41.46 3.55
2769 2916 3.367992 TGCAACTTATTTGTGGCACTG 57.632 42.857 19.83 7.03 41.46 3.66
2784 2931 8.909708 TGCAAAGTTAATAATGATAGTGCAAC 57.090 30.769 0.00 0.00 35.50 4.17
2785 2932 9.734620 GATGCAAAGTTAATAATGATAGTGCAA 57.265 29.630 0.00 0.00 41.15 4.08
2786 2933 9.123902 AGATGCAAAGTTAATAATGATAGTGCA 57.876 29.630 0.00 0.00 41.92 4.57
2787 2934 9.956720 AAGATGCAAAGTTAATAATGATAGTGC 57.043 29.630 0.00 0.00 0.00 4.40
2792 2939 9.101655 GCCAAAAGATGCAAAGTTAATAATGAT 57.898 29.630 0.00 0.00 0.00 2.45
2793 2940 8.313292 AGCCAAAAGATGCAAAGTTAATAATGA 58.687 29.630 0.00 0.00 0.00 2.57
2794 2941 8.483307 AGCCAAAAGATGCAAAGTTAATAATG 57.517 30.769 0.00 0.00 0.00 1.90
2795 2942 9.154847 GAAGCCAAAAGATGCAAAGTTAATAAT 57.845 29.630 0.00 0.00 0.00 1.28
2796 2943 8.147058 TGAAGCCAAAAGATGCAAAGTTAATAA 58.853 29.630 0.00 0.00 0.00 1.40
2797 2944 7.665690 TGAAGCCAAAAGATGCAAAGTTAATA 58.334 30.769 0.00 0.00 0.00 0.98
2798 2945 6.523840 TGAAGCCAAAAGATGCAAAGTTAAT 58.476 32.000 0.00 0.00 0.00 1.40
2799 2946 5.911752 TGAAGCCAAAAGATGCAAAGTTAA 58.088 33.333 0.00 0.00 0.00 2.01
2800 2947 5.528043 TGAAGCCAAAAGATGCAAAGTTA 57.472 34.783 0.00 0.00 0.00 2.24
2801 2948 4.405116 TGAAGCCAAAAGATGCAAAGTT 57.595 36.364 0.00 0.00 0.00 2.66
2802 2949 4.405116 TTGAAGCCAAAAGATGCAAAGT 57.595 36.364 0.00 0.00 0.00 2.66
2803 2950 7.605410 AATATTGAAGCCAAAAGATGCAAAG 57.395 32.000 0.00 0.00 35.67 2.77
2804 2951 9.100554 CATAATATTGAAGCCAAAAGATGCAAA 57.899 29.630 0.00 0.00 35.67 3.68
2805 2952 8.476447 TCATAATATTGAAGCCAAAAGATGCAA 58.524 29.630 0.00 0.00 35.67 4.08
2806 2953 8.009622 TCATAATATTGAAGCCAAAAGATGCA 57.990 30.769 0.00 0.00 35.67 3.96
2807 2954 8.876275 TTCATAATATTGAAGCCAAAAGATGC 57.124 30.769 0.00 0.00 35.67 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.