Multiple sequence alignment - TraesCS7A01G143300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G143300 chr7A 100.000 4660 0 0 2149 6808 94429810 94425151 0.000000e+00 8606
1 TraesCS7A01G143300 chr7A 97.786 2620 56 2 2425 5043 603147628 603145010 0.000000e+00 4516
2 TraesCS7A01G143300 chr7A 97.748 2620 58 1 2425 5043 12111854 12114473 0.000000e+00 4510
3 TraesCS7A01G143300 chr7A 97.748 2620 57 2 2425 5043 645476041 645478659 0.000000e+00 4510
4 TraesCS7A01G143300 chr7A 100.000 1899 0 0 1 1899 94431958 94430060 0.000000e+00 3507
5 TraesCS7A01G143300 chr7A 83.612 958 117 24 5116 6059 94450007 94449076 0.000000e+00 863
6 TraesCS7A01G143300 chr7A 84.229 558 76 10 951 1498 94450749 94450194 3.610000e-147 532
7 TraesCS7A01G143300 chr7A 97.491 279 7 0 2149 2427 48600562 48600284 1.720000e-130 477
8 TraesCS7A01G143300 chr7A 97.491 279 7 0 2149 2427 81833598 81833876 1.720000e-130 477
9 TraesCS7A01G143300 chr7A 97.491 279 7 0 2149 2427 101650619 101650897 1.720000e-130 477
10 TraesCS7A01G143300 chr7A 97.491 279 7 0 2149 2427 645465908 645466186 1.720000e-130 477
11 TraesCS7A01G143300 chr7A 97.491 279 7 0 2149 2427 648587620 648587898 1.720000e-130 477
12 TraesCS7A01G143300 chr7A 99.170 241 2 0 1659 1899 615762723 615762483 1.050000e-117 435
13 TraesCS7A01G143300 chr7A 98.374 246 3 1 1655 1899 95634606 95634361 1.360000e-116 431
14 TraesCS7A01G143300 chr7A 98.755 241 3 0 1659 1899 43982386 43982146 4.880000e-116 429
15 TraesCS7A01G143300 chr7A 98.755 241 3 0 1659 1899 69443501 69443741 4.880000e-116 429
16 TraesCS7A01G143300 chr7A 97.211 251 6 1 1649 1899 728498644 728498395 2.270000e-114 424
17 TraesCS7A01G143300 chr6A 97.822 2617 56 1 2428 5043 582446037 582443421 0.000000e+00 4516
18 TraesCS7A01G143300 chr6A 97.748 2620 55 2 2425 5043 611681902 611679286 0.000000e+00 4508
19 TraesCS7A01G143300 chr6A 97.491 279 7 0 2149 2427 184792618 184792896 1.720000e-130 477
20 TraesCS7A01G143300 chr1A 97.785 2619 56 2 2425 5043 6664706 6667322 0.000000e+00 4514
21 TraesCS7A01G143300 chr3A 97.747 2619 59 0 2425 5043 4105758 4108376 0.000000e+00 4510
22 TraesCS7A01G143300 chr3A 97.748 2620 58 1 2425 5043 55699084 55701703 0.000000e+00 4510
23 TraesCS7A01G143300 chr3A 97.849 279 6 0 2149 2427 735573052 735572774 3.690000e-132 483
24 TraesCS7A01G143300 chr3A 99.170 241 2 0 1659 1899 669066008 669066248 1.050000e-117 435
25 TraesCS7A01G143300 chr3A 98.755 241 3 0 1659 1899 25545881 25546121 4.880000e-116 429
26 TraesCS7A01G143300 chr4A 97.750 2622 51 4 2425 5043 614580364 614577748 0.000000e+00 4508
27 TraesCS7A01G143300 chr4A 96.503 286 10 0 2149 2434 622984658 622984943 2.220000e-129 473
28 TraesCS7A01G143300 chr4A 97.581 248 5 1 1652 1899 612940493 612940739 2.270000e-114 424
29 TraesCS7A01G143300 chr4A 80.347 173 17 13 1003 1170 12678412 12678252 1.550000e-21 115
30 TraesCS7A01G143300 chr7B 98.433 1659 25 1 1 1658 44306298 44304640 0.000000e+00 2918
31 TraesCS7A01G143300 chr7B 94.439 1007 27 11 5045 6024 44304642 44303638 0.000000e+00 1522
32 TraesCS7A01G143300 chr7B 94.000 800 38 6 6010 6808 44302274 44301484 0.000000e+00 1203
33 TraesCS7A01G143300 chr7B 83.539 1051 130 23 5112 6150 44394480 44393461 0.000000e+00 942
34 TraesCS7A01G143300 chr7B 85.656 739 85 12 5270 6001 44362296 44361572 0.000000e+00 758
35 TraesCS7A01G143300 chr7B 84.182 550 74 11 955 1493 44382564 44382017 7.820000e-144 521
36 TraesCS7A01G143300 chr7B 90.536 317 27 3 950 1264 44395106 44394791 3.800000e-112 416
37 TraesCS7A01G143300 chr7D 97.893 1424 25 3 1 1421 92254489 92253068 0.000000e+00 2459
38 TraesCS7A01G143300 chr7D 96.321 1196 27 9 5045 6239 92249130 92247951 0.000000e+00 1949
39 TraesCS7A01G143300 chr7D 84.488 909 107 22 5116 6007 92272544 92271653 0.000000e+00 867
40 TraesCS7A01G143300 chr7D 85.938 576 51 11 6247 6808 92245863 92245304 7.610000e-164 588
41 TraesCS7A01G143300 chr7D 81.224 719 92 22 951 1658 92273205 92272519 2.160000e-149 540
42 TraesCS7A01G143300 chr7D 95.082 244 9 2 1416 1658 92249369 92249128 1.390000e-101 381
43 TraesCS7A01G143300 chr5A 97.491 279 7 0 2149 2427 589860018 589859740 1.720000e-130 477
44 TraesCS7A01G143300 chr5A 98.755 241 3 0 1659 1899 62525966 62526206 4.880000e-116 429
45 TraesCS7A01G143300 chr4B 82.081 173 14 12 1003 1170 568340006 568340166 1.540000e-26 132
46 TraesCS7A01G143300 chr4B 79.070 172 21 11 1003 1170 568410461 568410621 3.360000e-18 104
47 TraesCS7A01G143300 chr6D 72.481 516 88 33 1010 1493 137146451 137146944 4.310000e-22 117
48 TraesCS7A01G143300 chr6B 80.120 166 16 12 1010 1170 236572007 236572160 2.600000e-19 108
49 TraesCS7A01G143300 chr4D 79.070 172 21 9 1003 1170 455319013 455319173 3.360000e-18 104
50 TraesCS7A01G143300 chr4D 78.409 176 21 12 1000 1170 455254528 455254691 1.560000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G143300 chr7A 94425151 94431958 6807 True 6056.50 8606 100.0000 1 6808 2 chr7A.!!$R7 6807
1 TraesCS7A01G143300 chr7A 603145010 603147628 2618 True 4516.00 4516 97.7860 2425 5043 1 chr7A.!!$R4 2618
2 TraesCS7A01G143300 chr7A 12111854 12114473 2619 False 4510.00 4510 97.7480 2425 5043 1 chr7A.!!$F1 2618
3 TraesCS7A01G143300 chr7A 645476041 645478659 2618 False 4510.00 4510 97.7480 2425 5043 1 chr7A.!!$F6 2618
4 TraesCS7A01G143300 chr7A 94449076 94450749 1673 True 697.50 863 83.9205 951 6059 2 chr7A.!!$R8 5108
5 TraesCS7A01G143300 chr6A 582443421 582446037 2616 True 4516.00 4516 97.8220 2428 5043 1 chr6A.!!$R1 2615
6 TraesCS7A01G143300 chr6A 611679286 611681902 2616 True 4508.00 4508 97.7480 2425 5043 1 chr6A.!!$R2 2618
7 TraesCS7A01G143300 chr1A 6664706 6667322 2616 False 4514.00 4514 97.7850 2425 5043 1 chr1A.!!$F1 2618
8 TraesCS7A01G143300 chr3A 4105758 4108376 2618 False 4510.00 4510 97.7470 2425 5043 1 chr3A.!!$F1 2618
9 TraesCS7A01G143300 chr3A 55699084 55701703 2619 False 4510.00 4510 97.7480 2425 5043 1 chr3A.!!$F3 2618
10 TraesCS7A01G143300 chr4A 614577748 614580364 2616 True 4508.00 4508 97.7500 2425 5043 1 chr4A.!!$R2 2618
11 TraesCS7A01G143300 chr7B 44301484 44306298 4814 True 1881.00 2918 95.6240 1 6808 3 chr7B.!!$R3 6807
12 TraesCS7A01G143300 chr7B 44361572 44362296 724 True 758.00 758 85.6560 5270 6001 1 chr7B.!!$R1 731
13 TraesCS7A01G143300 chr7B 44393461 44395106 1645 True 679.00 942 87.0375 950 6150 2 chr7B.!!$R4 5200
14 TraesCS7A01G143300 chr7B 44382017 44382564 547 True 521.00 521 84.1820 955 1493 1 chr7B.!!$R2 538
15 TraesCS7A01G143300 chr7D 92245304 92254489 9185 True 1344.25 2459 93.8085 1 6808 4 chr7D.!!$R1 6807
16 TraesCS7A01G143300 chr7D 92271653 92273205 1552 True 703.50 867 82.8560 951 6007 2 chr7D.!!$R2 5056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
575 577 5.986501 AGGTTTTGGCCGTTGATATTTTA 57.013 34.783 0.00 0.0 0.00 1.52 F
1375 1385 2.064434 TGAATTTCACAGTGGCACCA 57.936 45.000 15.27 0.0 0.00 4.17 F
1801 5579 0.036306 ACTAAAGGCCCTTCACGTGG 59.964 55.000 17.00 0.0 0.00 4.94 F
1871 5649 0.106719 CAACCGGGACCAATAGGCAT 60.107 55.000 6.32 0.0 39.06 4.40 F
2781 6559 0.181587 TTTTTCTCCACTGCGACCCA 59.818 50.000 0.00 0.0 0.00 4.51 F
4591 8373 0.984230 AATGGAGCTTGGAGGTCGAA 59.016 50.000 0.00 0.0 43.29 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 5447 0.030399 ACCGGGACTATAGGCCCTTT 60.030 55.000 36.19 22.52 42.40 3.11 R
3101 6879 0.249322 GCCCGACAGTACATACGCAT 60.249 55.000 0.00 0.00 0.00 4.73 R
3540 7321 3.325716 GGCACGGAGAAATAGGGGTTATA 59.674 47.826 0.00 0.00 0.00 0.98 R
3961 7742 4.457603 CCGTTGGATCAATTGTTACCTTGA 59.542 41.667 5.13 1.05 35.95 3.02 R
4791 8574 1.971695 GAACCGGGACCAAAGGCTG 60.972 63.158 6.32 0.00 0.00 4.85 R
6655 13977 0.321122 AGGAGCTCCAACTGCTTTCG 60.321 55.000 33.90 0.00 41.30 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
259 261 7.562259 TTCCTCGGTCAATATATTATGGGAA 57.438 36.000 0.00 4.56 0.00 3.97
575 577 5.986501 AGGTTTTGGCCGTTGATATTTTA 57.013 34.783 0.00 0.00 0.00 1.52
813 815 7.750947 ACTAATTGACCCTAACCTTATGTCT 57.249 36.000 0.00 0.00 0.00 3.41
933 935 8.774586 GTCCAATATTAAGTGTCGCTCAAATAT 58.225 33.333 7.60 7.60 32.00 1.28
1068 1071 4.764308 AGGAAGAAGCTTTCAAAGTCATCC 59.236 41.667 0.00 1.83 0.00 3.51
1375 1385 2.064434 TGAATTTCACAGTGGCACCA 57.936 45.000 15.27 0.00 0.00 4.17
1469 5187 7.566760 ACATGCTTAAACCGAATGATAATGA 57.433 32.000 0.00 0.00 0.00 2.57
1658 5436 6.929049 TGCACAGCCATGTATAGTAACTATTC 59.071 38.462 0.00 0.00 37.65 1.75
1659 5437 6.929049 GCACAGCCATGTATAGTAACTATTCA 59.071 38.462 0.00 0.00 37.65 2.57
1660 5438 7.095607 GCACAGCCATGTATAGTAACTATTCAC 60.096 40.741 0.00 0.00 37.65 3.18
1661 5439 8.144478 CACAGCCATGTATAGTAACTATTCACT 58.856 37.037 0.00 0.00 37.65 3.41
1662 5440 8.144478 ACAGCCATGTATAGTAACTATTCACTG 58.856 37.037 0.00 0.00 38.09 3.66
1663 5441 7.600375 CAGCCATGTATAGTAACTATTCACTGG 59.400 40.741 1.53 1.53 32.62 4.00
1664 5442 7.290248 AGCCATGTATAGTAACTATTCACTGGT 59.710 37.037 4.52 0.00 32.40 4.00
1665 5443 8.582437 GCCATGTATAGTAACTATTCACTGGTA 58.418 37.037 4.52 0.00 32.40 3.25
1674 5452 8.101419 AGTAACTATTCACTGGTAGAAAAAGGG 58.899 37.037 0.00 0.00 0.00 3.95
1675 5453 5.254115 ACTATTCACTGGTAGAAAAAGGGC 58.746 41.667 0.00 0.00 0.00 5.19
1676 5454 2.579410 TCACTGGTAGAAAAAGGGCC 57.421 50.000 0.00 0.00 0.00 5.80
1677 5455 2.062636 TCACTGGTAGAAAAAGGGCCT 58.937 47.619 0.00 0.00 0.00 5.19
1678 5456 3.253220 TCACTGGTAGAAAAAGGGCCTA 58.747 45.455 6.41 0.00 0.00 3.93
1679 5457 3.850173 TCACTGGTAGAAAAAGGGCCTAT 59.150 43.478 6.41 0.00 0.00 2.57
1680 5458 5.034200 TCACTGGTAGAAAAAGGGCCTATA 58.966 41.667 6.41 0.00 0.00 1.31
1681 5459 5.130477 TCACTGGTAGAAAAAGGGCCTATAG 59.870 44.000 6.41 0.00 0.00 1.31
1682 5460 5.037598 ACTGGTAGAAAAAGGGCCTATAGT 58.962 41.667 6.41 0.00 0.00 2.12
1683 5461 5.130643 ACTGGTAGAAAAAGGGCCTATAGTC 59.869 44.000 6.41 2.06 0.00 2.59
1684 5462 4.411212 TGGTAGAAAAAGGGCCTATAGTCC 59.589 45.833 6.41 4.84 0.00 3.85
1685 5463 4.202440 GGTAGAAAAAGGGCCTATAGTCCC 60.202 50.000 11.13 11.13 42.94 4.46
1689 5467 4.308061 GGGCCTATAGTCCCGGTT 57.692 61.111 2.38 0.00 32.00 4.44
1690 5468 2.056141 GGGCCTATAGTCCCGGTTC 58.944 63.158 2.38 0.00 32.00 3.62
1691 5469 1.664306 GGCCTATAGTCCCGGTTCG 59.336 63.158 0.00 0.00 0.00 3.95
1692 5470 1.111715 GGCCTATAGTCCCGGTTCGT 61.112 60.000 0.00 0.00 0.00 3.85
1693 5471 1.609208 GCCTATAGTCCCGGTTCGTA 58.391 55.000 0.00 0.00 0.00 3.43
1694 5472 1.956477 GCCTATAGTCCCGGTTCGTAA 59.044 52.381 0.00 0.00 0.00 3.18
1695 5473 2.030451 GCCTATAGTCCCGGTTCGTAAG 60.030 54.545 0.00 0.00 0.00 2.34
1696 5474 2.555757 CCTATAGTCCCGGTTCGTAAGG 59.444 54.545 0.00 0.00 38.47 2.69
1697 5475 1.406903 ATAGTCCCGGTTCGTAAGGG 58.593 55.000 0.00 0.00 46.40 3.95
1698 5476 0.039618 TAGTCCCGGTTCGTAAGGGT 59.960 55.000 0.00 0.00 45.27 4.34
1699 5477 1.216444 GTCCCGGTTCGTAAGGGTC 59.784 63.158 0.00 0.00 45.27 4.46
1700 5478 1.077265 TCCCGGTTCGTAAGGGTCT 59.923 57.895 0.00 0.00 45.27 3.85
1701 5479 0.542702 TCCCGGTTCGTAAGGGTCTT 60.543 55.000 0.00 0.00 45.27 3.01
1702 5480 0.322648 CCCGGTTCGTAAGGGTCTTT 59.677 55.000 0.00 0.00 40.27 2.52
1703 5481 1.550072 CCCGGTTCGTAAGGGTCTTTA 59.450 52.381 0.00 0.00 40.27 1.85
1704 5482 2.417787 CCCGGTTCGTAAGGGTCTTTAG 60.418 54.545 0.00 0.00 40.27 1.85
1705 5483 2.232208 CCGGTTCGTAAGGGTCTTTAGT 59.768 50.000 0.00 0.00 38.47 2.24
1706 5484 3.505836 CGGTTCGTAAGGGTCTTTAGTC 58.494 50.000 0.00 0.00 38.47 2.59
1707 5485 3.674410 CGGTTCGTAAGGGTCTTTAGTCC 60.674 52.174 0.00 0.00 38.47 3.85
1708 5486 3.368843 GGTTCGTAAGGGTCTTTAGTCCC 60.369 52.174 4.13 4.13 42.66 4.46
1709 5487 2.094675 TCGTAAGGGTCTTTAGTCCCG 58.905 52.381 6.44 0.00 46.13 5.14
1710 5488 1.135721 CGTAAGGGTCTTTAGTCCCGG 59.864 57.143 0.00 0.00 46.13 5.73
1711 5489 2.182827 GTAAGGGTCTTTAGTCCCGGT 58.817 52.381 0.00 2.54 46.13 5.28
1712 5490 1.738474 AAGGGTCTTTAGTCCCGGTT 58.262 50.000 0.00 0.00 46.13 4.44
1713 5491 1.273759 AGGGTCTTTAGTCCCGGTTC 58.726 55.000 0.00 0.00 46.13 3.62
1714 5492 0.251354 GGGTCTTTAGTCCCGGTTCC 59.749 60.000 0.00 0.00 33.91 3.62
1715 5493 0.108472 GGTCTTTAGTCCCGGTTCCG 60.108 60.000 0.00 4.08 0.00 4.30
1729 5507 2.845363 GTTCCGGAACCAGGACTAAA 57.155 50.000 33.02 0.00 37.53 1.85
1730 5508 2.696506 GTTCCGGAACCAGGACTAAAG 58.303 52.381 33.02 0.00 37.53 1.85
1731 5509 2.019807 TCCGGAACCAGGACTAAAGT 57.980 50.000 0.00 0.00 31.86 2.66
1732 5510 1.621814 TCCGGAACCAGGACTAAAGTG 59.378 52.381 0.00 0.00 31.86 3.16
1733 5511 1.346722 CCGGAACCAGGACTAAAGTGT 59.653 52.381 0.00 0.00 0.00 3.55
1734 5512 2.612221 CCGGAACCAGGACTAAAGTGTC 60.612 54.545 0.00 0.00 36.31 3.67
1735 5513 2.685100 GGAACCAGGACTAAAGTGTCG 58.315 52.381 0.00 0.00 37.81 4.35
1736 5514 2.612221 GGAACCAGGACTAAAGTGTCGG 60.612 54.545 0.00 0.00 37.81 4.79
1737 5515 1.713297 ACCAGGACTAAAGTGTCGGT 58.287 50.000 0.00 0.00 37.81 4.69
1738 5516 2.880443 ACCAGGACTAAAGTGTCGGTA 58.120 47.619 0.00 0.00 37.81 4.02
1739 5517 2.560105 ACCAGGACTAAAGTGTCGGTAC 59.440 50.000 0.00 0.00 37.81 3.34
1740 5518 2.824341 CCAGGACTAAAGTGTCGGTACT 59.176 50.000 0.00 0.00 37.81 2.73
1741 5519 4.012374 CCAGGACTAAAGTGTCGGTACTA 58.988 47.826 0.00 0.00 37.81 1.82
1742 5520 4.460382 CCAGGACTAAAGTGTCGGTACTAA 59.540 45.833 0.00 0.00 37.81 2.24
1743 5521 5.126707 CCAGGACTAAAGTGTCGGTACTAAT 59.873 44.000 0.00 0.00 37.81 1.73
1744 5522 6.319658 CCAGGACTAAAGTGTCGGTACTAATA 59.680 42.308 0.00 0.00 37.81 0.98
1745 5523 7.192232 CAGGACTAAAGTGTCGGTACTAATAC 58.808 42.308 0.00 0.00 37.81 1.89
1746 5524 6.319911 AGGACTAAAGTGTCGGTACTAATACC 59.680 42.308 0.00 0.00 46.72 2.73
1766 5544 3.830698 CCCCCTTTAGTCCCGGTT 58.169 61.111 0.00 0.00 0.00 4.44
1767 5545 1.605992 CCCCCTTTAGTCCCGGTTC 59.394 63.158 0.00 0.00 0.00 3.62
1768 5546 1.202769 CCCCCTTTAGTCCCGGTTCA 61.203 60.000 0.00 0.00 0.00 3.18
1769 5547 0.694196 CCCCTTTAGTCCCGGTTCAA 59.306 55.000 0.00 0.00 0.00 2.69
1770 5548 1.283905 CCCCTTTAGTCCCGGTTCAAT 59.716 52.381 0.00 0.00 0.00 2.57
1771 5549 2.640184 CCCTTTAGTCCCGGTTCAATC 58.360 52.381 0.00 0.00 0.00 2.67
1772 5550 2.640184 CCTTTAGTCCCGGTTCAATCC 58.360 52.381 0.00 0.00 0.00 3.01
1773 5551 2.026636 CCTTTAGTCCCGGTTCAATCCA 60.027 50.000 0.00 0.00 0.00 3.41
1774 5552 3.270877 CTTTAGTCCCGGTTCAATCCAG 58.729 50.000 0.00 0.00 0.00 3.86
1775 5553 2.241281 TAGTCCCGGTTCAATCCAGA 57.759 50.000 0.00 0.00 0.00 3.86
1776 5554 1.358152 AGTCCCGGTTCAATCCAGAA 58.642 50.000 0.00 0.00 0.00 3.02
1777 5555 1.003233 AGTCCCGGTTCAATCCAGAAC 59.997 52.381 0.00 0.00 45.50 3.01
1782 5560 3.948735 GTTCAATCCAGAACCGGGA 57.051 52.632 6.32 0.00 41.52 5.14
1783 5561 1.450025 GTTCAATCCAGAACCGGGAC 58.550 55.000 6.32 0.00 41.52 4.46
1784 5562 1.003233 GTTCAATCCAGAACCGGGACT 59.997 52.381 6.32 0.73 41.52 3.85
1785 5563 2.235402 GTTCAATCCAGAACCGGGACTA 59.765 50.000 6.32 0.00 41.52 2.59
1786 5564 2.542550 TCAATCCAGAACCGGGACTAA 58.457 47.619 6.32 0.00 37.23 2.24
1787 5565 2.907696 TCAATCCAGAACCGGGACTAAA 59.092 45.455 6.32 0.00 37.23 1.85
1788 5566 3.055385 TCAATCCAGAACCGGGACTAAAG 60.055 47.826 6.32 0.00 37.23 1.85
1789 5567 1.272807 TCCAGAACCGGGACTAAAGG 58.727 55.000 6.32 2.64 0.00 3.11
1790 5568 0.392595 CCAGAACCGGGACTAAAGGC 60.393 60.000 6.32 0.00 0.00 4.35
1791 5569 0.392595 CAGAACCGGGACTAAAGGCC 60.393 60.000 6.32 0.00 0.00 5.19
1792 5570 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
1793 5571 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
1794 5572 1.138228 AACCGGGACTAAAGGCCCTT 61.138 55.000 18.97 4.45 42.40 3.95
1795 5573 1.223763 CCGGGACTAAAGGCCCTTC 59.776 63.158 18.97 0.00 42.40 3.46
1796 5574 1.559065 CCGGGACTAAAGGCCCTTCA 61.559 60.000 18.97 0.00 42.40 3.02
1797 5575 0.392595 CGGGACTAAAGGCCCTTCAC 60.393 60.000 18.97 0.00 42.40 3.18
1798 5576 0.392595 GGGACTAAAGGCCCTTCACG 60.393 60.000 14.19 0.00 41.31 4.35
1799 5577 0.323957 GGACTAAAGGCCCTTCACGT 59.676 55.000 0.00 0.00 0.00 4.49
1800 5578 1.439679 GACTAAAGGCCCTTCACGTG 58.560 55.000 9.94 9.94 0.00 4.49
1801 5579 0.036306 ACTAAAGGCCCTTCACGTGG 59.964 55.000 17.00 0.00 0.00 4.94
1807 5585 2.669569 CCCTTCACGTGGGCAGTG 60.670 66.667 17.00 0.00 37.99 3.66
1808 5586 3.357079 CCTTCACGTGGGCAGTGC 61.357 66.667 17.00 6.55 39.31 4.40
1809 5587 3.716006 CTTCACGTGGGCAGTGCG 61.716 66.667 17.00 0.00 39.31 5.34
1825 5603 3.385384 CGCAGAGCCCAGTCAGGA 61.385 66.667 0.00 0.00 41.22 3.86
1826 5604 2.583520 GCAGAGCCCAGTCAGGAG 59.416 66.667 0.00 0.00 41.22 3.69
1827 5605 1.986757 GCAGAGCCCAGTCAGGAGA 60.987 63.158 0.00 0.00 41.22 3.71
1828 5606 1.896694 CAGAGCCCAGTCAGGAGAC 59.103 63.158 0.00 0.00 45.31 3.36
1829 5607 1.305718 AGAGCCCAGTCAGGAGACC 60.306 63.158 0.00 0.00 46.15 3.85
1830 5608 2.284995 AGCCCAGTCAGGAGACCC 60.285 66.667 0.00 0.00 46.15 4.46
1831 5609 2.284995 GCCCAGTCAGGAGACCCT 60.285 66.667 0.00 0.00 46.15 4.34
1832 5610 1.920835 GCCCAGTCAGGAGACCCTT 60.921 63.158 0.00 0.00 46.15 3.95
1833 5611 1.492993 GCCCAGTCAGGAGACCCTTT 61.493 60.000 0.00 0.00 46.15 3.11
1834 5612 0.326264 CCCAGTCAGGAGACCCTTTG 59.674 60.000 0.00 0.00 46.15 2.77
1835 5613 0.326264 CCAGTCAGGAGACCCTTTGG 59.674 60.000 0.00 0.00 46.15 3.28
1836 5614 2.388661 CCAGTCAGGAGACCCTTTGGT 61.389 57.143 0.00 0.00 46.15 3.67
1844 5622 2.518933 ACCCTTTGGTCCCGGTTG 59.481 61.111 0.00 0.00 43.06 3.77
1845 5623 2.282887 CCCTTTGGTCCCGGTTGG 60.283 66.667 0.00 0.00 0.00 3.77
1846 5624 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
1847 5625 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
1848 5626 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
1849 5627 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
1864 5642 4.589675 GGCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
1865 5643 2.282887 GCACCAACCGGGACCAAT 60.283 61.111 6.32 0.00 41.15 3.16
1866 5644 1.001887 GCACCAACCGGGACCAATA 60.002 57.895 6.32 0.00 41.15 1.90
1867 5645 1.029947 GCACCAACCGGGACCAATAG 61.030 60.000 6.32 0.00 41.15 1.73
1868 5646 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
1869 5647 1.453197 CCAACCGGGACCAATAGGC 60.453 63.158 6.32 0.00 40.01 3.93
1870 5648 1.301623 CAACCGGGACCAATAGGCA 59.698 57.895 6.32 0.00 39.06 4.75
1871 5649 0.106719 CAACCGGGACCAATAGGCAT 60.107 55.000 6.32 0.00 39.06 4.40
1872 5650 0.182775 AACCGGGACCAATAGGCATC 59.817 55.000 6.32 0.00 39.06 3.91
1873 5651 1.073199 CCGGGACCAATAGGCATCC 59.927 63.158 0.00 0.00 39.06 3.51
1874 5652 1.705002 CCGGGACCAATAGGCATCCA 61.705 60.000 0.00 0.00 39.06 3.41
1875 5653 0.535102 CGGGACCAATAGGCATCCAC 60.535 60.000 0.00 0.00 39.06 4.02
1876 5654 0.535102 GGGACCAATAGGCATCCACG 60.535 60.000 0.00 0.00 39.06 4.94
1877 5655 1.166531 GGACCAATAGGCATCCACGC 61.167 60.000 0.00 0.00 39.06 5.34
1878 5656 1.498865 GACCAATAGGCATCCACGCG 61.499 60.000 3.53 3.53 39.06 6.01
1879 5657 1.523711 CCAATAGGCATCCACGCGT 60.524 57.895 5.58 5.58 0.00 6.01
1880 5658 1.498865 CCAATAGGCATCCACGCGTC 61.499 60.000 9.86 0.00 0.00 5.19
1881 5659 0.809636 CAATAGGCATCCACGCGTCA 60.810 55.000 9.86 0.00 0.00 4.35
1882 5660 0.530650 AATAGGCATCCACGCGTCAG 60.531 55.000 9.86 3.57 0.00 3.51
1883 5661 2.978452 ATAGGCATCCACGCGTCAGC 62.978 60.000 9.86 11.14 40.74 4.26
1885 5663 4.152625 GCATCCACGCGTCAGCAC 62.153 66.667 9.86 0.00 45.49 4.40
1886 5664 2.433145 CATCCACGCGTCAGCACT 60.433 61.111 9.86 0.00 45.49 4.40
1887 5665 2.029288 CATCCACGCGTCAGCACTT 61.029 57.895 9.86 0.00 45.49 3.16
1888 5666 1.738099 ATCCACGCGTCAGCACTTC 60.738 57.895 9.86 0.00 45.49 3.01
1889 5667 2.159819 ATCCACGCGTCAGCACTTCT 62.160 55.000 9.86 0.00 45.49 2.85
1890 5668 2.661566 CCACGCGTCAGCACTTCTG 61.662 63.158 9.86 0.00 45.49 3.02
1891 5669 1.951130 CACGCGTCAGCACTTCTGT 60.951 57.895 9.86 0.00 45.49 3.41
1892 5670 1.951130 ACGCGTCAGCACTTCTGTG 60.951 57.895 5.58 0.00 45.49 3.66
1893 5671 2.661566 CGCGTCAGCACTTCTGTGG 61.662 63.158 0.00 0.00 45.49 4.17
1894 5672 2.959357 GCGTCAGCACTTCTGTGGC 61.959 63.158 0.00 0.00 43.97 5.01
1895 5673 1.301244 CGTCAGCACTTCTGTGGCT 60.301 57.895 0.00 0.00 43.97 4.75
1896 5674 1.563435 CGTCAGCACTTCTGTGGCTG 61.563 60.000 6.53 6.53 43.97 4.85
1897 5675 1.071987 TCAGCACTTCTGTGGCTGG 59.928 57.895 12.33 0.00 42.70 4.85
1898 5676 1.970114 CAGCACTTCTGTGGCTGGG 60.970 63.158 5.01 0.00 43.97 4.45
2180 5958 7.907841 GGGGGTTAATTTAGGTGTTTCATAT 57.092 36.000 0.00 0.00 0.00 1.78
2181 5959 8.999905 GGGGGTTAATTTAGGTGTTTCATATA 57.000 34.615 0.00 0.00 0.00 0.86
2182 5960 9.596308 GGGGGTTAATTTAGGTGTTTCATATAT 57.404 33.333 0.00 0.00 0.00 0.86
2192 5970 9.899661 TTAGGTGTTTCATATATTGTGTTAGCT 57.100 29.630 0.00 0.00 0.00 3.32
2194 5972 9.547753 AGGTGTTTCATATATTGTGTTAGCTAG 57.452 33.333 0.00 0.00 0.00 3.42
2195 5973 9.326413 GGTGTTTCATATATTGTGTTAGCTAGT 57.674 33.333 0.00 0.00 0.00 2.57
2225 6003 9.453830 AATTAATAGGGAGAAGTGTCCTCTATT 57.546 33.333 15.84 15.84 40.08 1.73
2228 6006 8.429237 AATAGGGAGAAGTGTCCTCTATTATG 57.571 38.462 12.52 0.00 37.80 1.90
2229 6007 5.782925 AGGGAGAAGTGTCCTCTATTATGT 58.217 41.667 0.00 0.00 36.75 2.29
2230 6008 5.836358 AGGGAGAAGTGTCCTCTATTATGTC 59.164 44.000 0.00 0.00 36.75 3.06
2231 6009 5.011227 GGGAGAAGTGTCCTCTATTATGTCC 59.989 48.000 0.00 0.00 36.75 4.02
2232 6010 5.598830 GGAGAAGTGTCCTCTATTATGTCCA 59.401 44.000 0.00 0.00 33.30 4.02
2233 6011 6.268847 GGAGAAGTGTCCTCTATTATGTCCAT 59.731 42.308 0.00 0.00 33.30 3.41
2234 6012 7.060383 AGAAGTGTCCTCTATTATGTCCATG 57.940 40.000 0.00 0.00 0.00 3.66
2235 6013 5.220710 AGTGTCCTCTATTATGTCCATGC 57.779 43.478 0.00 0.00 0.00 4.06
2236 6014 4.904251 AGTGTCCTCTATTATGTCCATGCT 59.096 41.667 0.00 0.00 0.00 3.79
2237 6015 5.367937 AGTGTCCTCTATTATGTCCATGCTT 59.632 40.000 0.00 0.00 0.00 3.91
2238 6016 5.468072 GTGTCCTCTATTATGTCCATGCTTG 59.532 44.000 0.00 0.00 0.00 4.01
2239 6017 4.999950 GTCCTCTATTATGTCCATGCTTGG 59.000 45.833 12.41 12.41 45.15 3.61
2240 6018 4.660303 TCCTCTATTATGTCCATGCTTGGT 59.340 41.667 17.54 2.25 44.06 3.67
2241 6019 4.999950 CCTCTATTATGTCCATGCTTGGTC 59.000 45.833 17.54 12.96 44.06 4.02
2242 6020 4.631131 TCTATTATGTCCATGCTTGGTCG 58.369 43.478 17.54 0.21 44.06 4.79
2243 6021 3.558931 ATTATGTCCATGCTTGGTCGA 57.441 42.857 17.54 4.34 44.06 4.20
2244 6022 2.309528 TATGTCCATGCTTGGTCGAC 57.690 50.000 17.54 7.13 44.06 4.20
2245 6023 0.740868 ATGTCCATGCTTGGTCGACG 60.741 55.000 17.54 0.00 44.06 5.12
2246 6024 2.434185 TCCATGCTTGGTCGACGC 60.434 61.111 17.54 8.25 44.06 5.19
2247 6025 2.434884 CCATGCTTGGTCGACGCT 60.435 61.111 9.92 0.00 38.30 5.07
2248 6026 1.153647 CCATGCTTGGTCGACGCTA 60.154 57.895 9.92 0.00 38.30 4.26
2249 6027 1.421410 CCATGCTTGGTCGACGCTAC 61.421 60.000 9.92 0.00 38.30 3.58
2250 6028 1.516386 ATGCTTGGTCGACGCTACG 60.516 57.895 9.92 0.00 0.00 3.51
2251 6029 3.542742 GCTTGGTCGACGCTACGC 61.543 66.667 9.92 4.27 0.00 4.42
2252 6030 2.126618 CTTGGTCGACGCTACGCA 60.127 61.111 9.92 0.00 0.00 5.24
2253 6031 2.429571 TTGGTCGACGCTACGCAC 60.430 61.111 9.92 0.00 0.00 5.34
2254 6032 2.797866 CTTGGTCGACGCTACGCACT 62.798 60.000 9.92 0.00 0.00 4.40
2255 6033 1.576451 TTGGTCGACGCTACGCACTA 61.576 55.000 9.92 0.00 0.00 2.74
2256 6034 1.354506 GGTCGACGCTACGCACTAT 59.645 57.895 9.92 0.00 0.00 2.12
2257 6035 0.583438 GGTCGACGCTACGCACTATA 59.417 55.000 9.92 0.00 0.00 1.31
2258 6036 1.656713 GTCGACGCTACGCACTATAC 58.343 55.000 0.00 0.00 0.00 1.47
2259 6037 1.004610 GTCGACGCTACGCACTATACA 60.005 52.381 0.00 0.00 0.00 2.29
2260 6038 1.869132 TCGACGCTACGCACTATACAT 59.131 47.619 0.00 0.00 0.00 2.29
2261 6039 3.059166 TCGACGCTACGCACTATACATA 58.941 45.455 0.00 0.00 0.00 2.29
2262 6040 3.120889 TCGACGCTACGCACTATACATAC 60.121 47.826 0.00 0.00 0.00 2.39
2263 6041 3.151481 GACGCTACGCACTATACATACG 58.849 50.000 0.00 0.00 0.00 3.06
2264 6042 2.545526 ACGCTACGCACTATACATACGT 59.454 45.455 0.00 0.00 40.53 3.57
2265 6043 3.740832 ACGCTACGCACTATACATACGTA 59.259 43.478 0.00 0.00 38.12 3.57
2266 6044 4.389992 ACGCTACGCACTATACATACGTAT 59.610 41.667 1.14 1.14 41.34 3.06
2267 6045 5.576774 ACGCTACGCACTATACATACGTATA 59.423 40.000 7.96 0.00 39.17 1.47
2268 6046 6.256539 ACGCTACGCACTATACATACGTATAT 59.743 38.462 7.96 0.00 39.34 0.86
2269 6047 7.435192 ACGCTACGCACTATACATACGTATATA 59.565 37.037 7.96 1.08 39.34 0.86
2270 6048 8.268738 CGCTACGCACTATACATACGTATATAA 58.731 37.037 7.96 0.00 39.34 0.98
2271 6049 9.920826 GCTACGCACTATACATACGTATATAAA 57.079 33.333 7.96 0.00 39.34 1.40
2275 6053 9.647679 CGCACTATACATACGTATATAAAGAGG 57.352 37.037 7.96 0.00 39.34 3.69
2285 6063 7.418840 ACGTATATAAAGAGGACTAGACACG 57.581 40.000 0.00 0.00 0.00 4.49
2286 6064 6.073331 ACGTATATAAAGAGGACTAGACACGC 60.073 42.308 0.00 0.00 0.00 5.34
2287 6065 6.147492 CGTATATAAAGAGGACTAGACACGCT 59.853 42.308 0.00 0.00 0.00 5.07
2288 6066 7.330454 CGTATATAAAGAGGACTAGACACGCTA 59.670 40.741 0.00 0.00 0.00 4.26
2301 6079 7.285783 CTAGACACGCTAGCTAGATAGTAAG 57.714 44.000 25.15 13.64 40.15 2.34
2302 6080 4.453136 AGACACGCTAGCTAGATAGTAAGC 59.547 45.833 25.15 7.89 39.08 3.09
2303 6081 4.135306 ACACGCTAGCTAGATAGTAAGCA 58.865 43.478 25.15 0.00 41.32 3.91
2304 6082 4.579340 ACACGCTAGCTAGATAGTAAGCAA 59.421 41.667 25.15 0.00 41.32 3.91
2305 6083 5.067413 ACACGCTAGCTAGATAGTAAGCAAA 59.933 40.000 25.15 0.00 41.32 3.68
2306 6084 5.399892 CACGCTAGCTAGATAGTAAGCAAAC 59.600 44.000 25.15 0.68 41.32 2.93
2307 6085 4.613448 CGCTAGCTAGATAGTAAGCAAACG 59.387 45.833 25.15 9.30 41.32 3.60
2308 6086 5.560375 CGCTAGCTAGATAGTAAGCAAACGA 60.560 44.000 25.15 0.00 41.32 3.85
2309 6087 6.207213 GCTAGCTAGATAGTAAGCAAACGAA 58.793 40.000 25.15 0.00 41.32 3.85
2310 6088 6.361214 GCTAGCTAGATAGTAAGCAAACGAAG 59.639 42.308 25.15 0.00 41.32 3.79
2311 6089 5.593010 AGCTAGATAGTAAGCAAACGAAGG 58.407 41.667 0.00 0.00 41.32 3.46
2312 6090 5.360144 AGCTAGATAGTAAGCAAACGAAGGA 59.640 40.000 0.00 0.00 41.32 3.36
2313 6091 6.040878 GCTAGATAGTAAGCAAACGAAGGAA 58.959 40.000 0.00 0.00 38.63 3.36
2314 6092 6.534079 GCTAGATAGTAAGCAAACGAAGGAAA 59.466 38.462 0.00 0.00 38.63 3.13
2315 6093 6.723131 AGATAGTAAGCAAACGAAGGAAAC 57.277 37.500 0.00 0.00 0.00 2.78
2316 6094 6.228258 AGATAGTAAGCAAACGAAGGAAACA 58.772 36.000 0.00 0.00 0.00 2.83
2317 6095 4.813296 AGTAAGCAAACGAAGGAAACAG 57.187 40.909 0.00 0.00 0.00 3.16
2318 6096 4.448210 AGTAAGCAAACGAAGGAAACAGA 58.552 39.130 0.00 0.00 0.00 3.41
2319 6097 4.879545 AGTAAGCAAACGAAGGAAACAGAA 59.120 37.500 0.00 0.00 0.00 3.02
2320 6098 3.971032 AGCAAACGAAGGAAACAGAAG 57.029 42.857 0.00 0.00 0.00 2.85
2321 6099 3.541632 AGCAAACGAAGGAAACAGAAGA 58.458 40.909 0.00 0.00 0.00 2.87
2322 6100 4.137543 AGCAAACGAAGGAAACAGAAGAT 58.862 39.130 0.00 0.00 0.00 2.40
2323 6101 4.214332 AGCAAACGAAGGAAACAGAAGATC 59.786 41.667 0.00 0.00 0.00 2.75
2324 6102 4.702392 CAAACGAAGGAAACAGAAGATCG 58.298 43.478 0.00 0.00 35.16 3.69
2325 6103 3.662247 ACGAAGGAAACAGAAGATCGT 57.338 42.857 0.00 0.00 37.24 3.73
2326 6104 3.576648 ACGAAGGAAACAGAAGATCGTC 58.423 45.455 0.00 0.00 37.48 4.20
2327 6105 3.005472 ACGAAGGAAACAGAAGATCGTCA 59.995 43.478 11.35 0.00 37.48 4.35
2328 6106 4.177026 CGAAGGAAACAGAAGATCGTCAT 58.823 43.478 11.35 0.00 0.00 3.06
2329 6107 4.032217 CGAAGGAAACAGAAGATCGTCATG 59.968 45.833 11.35 8.56 0.00 3.07
2330 6108 4.808414 AGGAAACAGAAGATCGTCATGA 57.192 40.909 11.35 0.00 0.00 3.07
2331 6109 5.152623 AGGAAACAGAAGATCGTCATGAA 57.847 39.130 11.35 0.00 0.00 2.57
2332 6110 4.932200 AGGAAACAGAAGATCGTCATGAAC 59.068 41.667 11.35 0.06 0.00 3.18
2333 6111 4.690748 GGAAACAGAAGATCGTCATGAACA 59.309 41.667 11.35 0.00 0.00 3.18
2334 6112 5.352569 GGAAACAGAAGATCGTCATGAACAT 59.647 40.000 11.35 0.00 0.00 2.71
2335 6113 6.535150 GGAAACAGAAGATCGTCATGAACATA 59.465 38.462 11.35 0.00 0.00 2.29
2336 6114 7.225538 GGAAACAGAAGATCGTCATGAACATAT 59.774 37.037 11.35 0.00 0.00 1.78
2337 6115 9.249457 GAAACAGAAGATCGTCATGAACATATA 57.751 33.333 11.35 0.00 0.00 0.86
2338 6116 9.770097 AAACAGAAGATCGTCATGAACATATAT 57.230 29.630 11.35 0.00 0.00 0.86
2339 6117 8.754230 ACAGAAGATCGTCATGAACATATATG 57.246 34.615 11.29 11.29 0.00 1.78
2340 6118 7.330454 ACAGAAGATCGTCATGAACATATATGC 59.670 37.037 12.79 0.00 0.00 3.14
2341 6119 7.330208 CAGAAGATCGTCATGAACATATATGCA 59.670 37.037 12.79 4.17 0.00 3.96
2342 6120 8.039538 AGAAGATCGTCATGAACATATATGCAT 58.960 33.333 12.79 3.79 0.00 3.96
2343 6121 9.305925 GAAGATCGTCATGAACATATATGCATA 57.694 33.333 12.79 9.27 0.00 3.14
2344 6122 9.828039 AAGATCGTCATGAACATATATGCATAT 57.172 29.630 22.31 22.31 0.00 1.78
2365 6143 9.877137 GCATATATACAGAGAGAAGTGATATCG 57.123 37.037 0.00 0.00 0.00 2.92
2368 6146 6.811253 ATACAGAGAGAAGTGATATCGACC 57.189 41.667 0.00 0.00 0.00 4.79
2369 6147 4.527944 ACAGAGAGAAGTGATATCGACCA 58.472 43.478 0.00 0.00 0.00 4.02
2370 6148 4.336993 ACAGAGAGAAGTGATATCGACCAC 59.663 45.833 0.00 6.38 0.00 4.16
2371 6149 3.886505 AGAGAGAAGTGATATCGACCACC 59.113 47.826 9.84 0.00 34.00 4.61
2372 6150 3.886505 GAGAGAAGTGATATCGACCACCT 59.113 47.826 9.84 3.06 34.00 4.00
2373 6151 3.886505 AGAGAAGTGATATCGACCACCTC 59.113 47.826 9.84 10.01 34.00 3.85
2374 6152 3.886505 GAGAAGTGATATCGACCACCTCT 59.113 47.826 12.55 12.55 36.94 3.69
2375 6153 3.886505 AGAAGTGATATCGACCACCTCTC 59.113 47.826 9.84 6.02 30.63 3.20
2376 6154 2.588620 AGTGATATCGACCACCTCTCC 58.411 52.381 9.84 0.00 34.00 3.71
2377 6155 2.175931 AGTGATATCGACCACCTCTCCT 59.824 50.000 9.84 0.00 34.00 3.69
2378 6156 2.959707 GTGATATCGACCACCTCTCCTT 59.040 50.000 0.00 0.00 0.00 3.36
2379 6157 3.004944 GTGATATCGACCACCTCTCCTTC 59.995 52.174 0.00 0.00 0.00 3.46
2380 6158 3.117474 TGATATCGACCACCTCTCCTTCT 60.117 47.826 0.00 0.00 0.00 2.85
2381 6159 1.770294 ATCGACCACCTCTCCTTCTC 58.230 55.000 0.00 0.00 0.00 2.87
2382 6160 0.699399 TCGACCACCTCTCCTTCTCT 59.301 55.000 0.00 0.00 0.00 3.10
2383 6161 0.814457 CGACCACCTCTCCTTCTCTG 59.186 60.000 0.00 0.00 0.00 3.35
2384 6162 1.614583 CGACCACCTCTCCTTCTCTGA 60.615 57.143 0.00 0.00 0.00 3.27
2385 6163 2.099405 GACCACCTCTCCTTCTCTGAG 58.901 57.143 0.00 0.00 0.00 3.35
2386 6164 1.713647 ACCACCTCTCCTTCTCTGAGA 59.286 52.381 2.58 2.58 37.33 3.27
2393 6171 4.329638 TCTCCTTCTCTGAGAGATTGGT 57.670 45.455 22.61 0.00 38.56 3.67
2394 6172 4.277476 TCTCCTTCTCTGAGAGATTGGTC 58.723 47.826 22.61 0.00 38.56 4.02
2395 6173 3.020274 TCCTTCTCTGAGAGATTGGTCG 58.980 50.000 22.61 6.72 38.56 4.79
2396 6174 3.020274 CCTTCTCTGAGAGATTGGTCGA 58.980 50.000 13.70 0.00 38.56 4.20
2397 6175 3.445450 CCTTCTCTGAGAGATTGGTCGAA 59.555 47.826 13.70 0.00 38.56 3.71
2398 6176 4.420168 CTTCTCTGAGAGATTGGTCGAAC 58.580 47.826 13.70 0.00 38.56 3.95
2399 6177 3.421844 TCTCTGAGAGATTGGTCGAACA 58.578 45.455 8.34 0.00 33.35 3.18
2400 6178 3.826729 TCTCTGAGAGATTGGTCGAACAA 59.173 43.478 19.88 19.88 33.35 2.83
2401 6179 3.914312 TCTGAGAGATTGGTCGAACAAC 58.086 45.455 20.01 12.50 32.39 3.32
2402 6180 3.320826 TCTGAGAGATTGGTCGAACAACA 59.679 43.478 20.01 10.62 32.39 3.33
2403 6181 4.058124 CTGAGAGATTGGTCGAACAACAA 58.942 43.478 20.01 6.80 32.39 2.83
2404 6182 4.058124 TGAGAGATTGGTCGAACAACAAG 58.942 43.478 20.01 0.00 32.39 3.16
2405 6183 4.058817 GAGAGATTGGTCGAACAACAAGT 58.941 43.478 20.01 1.53 32.39 3.16
2406 6184 4.451900 AGAGATTGGTCGAACAACAAGTT 58.548 39.130 20.01 1.07 44.93 2.66
2422 6200 9.737427 AACAACAAGTTCTCGTATATCTATCTG 57.263 33.333 0.00 0.00 34.74 2.90
2423 6201 9.121658 ACAACAAGTTCTCGTATATCTATCTGA 57.878 33.333 0.00 0.00 0.00 3.27
2479 6257 1.137086 GTCTGTGCTCATCCCACGTAT 59.863 52.381 0.00 0.00 36.01 3.06
2487 6265 2.429250 CTCATCCCACGTATGTACACCA 59.571 50.000 0.00 0.00 0.00 4.17
2526 6304 7.502561 AGCTGTAAAAGTTCTTCAACTAATGGT 59.497 33.333 0.00 0.00 42.45 3.55
2613 6391 1.538047 ACTTCCGCTTCATGCACATT 58.462 45.000 0.00 0.00 43.06 2.71
2649 6427 6.208204 GGTTATACATACATAGAGTCACGGGT 59.792 42.308 0.00 0.00 0.00 5.28
2707 6485 0.814457 AATGCCATCCGCGCTTAAAA 59.186 45.000 5.56 0.00 42.08 1.52
2781 6559 0.181587 TTTTTCTCCACTGCGACCCA 59.818 50.000 0.00 0.00 0.00 4.51
2914 6692 2.564771 CATACCACATCACCTTCGCAT 58.435 47.619 0.00 0.00 0.00 4.73
3101 6879 3.764434 AGAGAGCATACGACCTTCTTTGA 59.236 43.478 0.00 0.00 0.00 2.69
3438 7219 1.107945 CAGCATCATTGGGCACATCA 58.892 50.000 0.00 0.00 0.00 3.07
3443 7224 2.812836 TCATTGGGCACATCATCTGT 57.187 45.000 0.00 0.00 39.20 3.41
3529 7310 4.142665 TGTCATCGTACTCTTCTTCTTCGG 60.143 45.833 0.00 0.00 0.00 4.30
3540 7321 1.275291 TCTTCTTCGGCGTCTTCCATT 59.725 47.619 6.85 0.00 0.00 3.16
4114 7895 6.832384 ACATGCAACTCCAATATCATCTTCTT 59.168 34.615 0.00 0.00 0.00 2.52
4591 8373 0.984230 AATGGAGCTTGGAGGTCGAA 59.016 50.000 0.00 0.00 43.29 3.71
4791 8574 0.255033 ATGAACCGGGACTAAAGGGC 59.745 55.000 6.32 0.00 0.00 5.19
4915 8698 1.065491 CAGATGAACCGGGACCAATGA 60.065 52.381 6.32 0.00 0.00 2.57
4992 8775 2.169330 GTCCCGGTTCTAGACTGAACT 58.831 52.381 0.00 0.00 44.02 3.01
5043 8826 6.200114 ACCATAGCCCTGTTTTCTACTAGTA 58.800 40.000 1.89 1.89 0.00 1.82
5044 8827 6.670902 ACCATAGCCCTGTTTTCTACTAGTAA 59.329 38.462 3.76 0.00 0.00 2.24
5045 8828 7.347485 ACCATAGCCCTGTTTTCTACTAGTAAT 59.653 37.037 3.76 0.00 0.00 1.89
5046 8829 8.211629 CCATAGCCCTGTTTTCTACTAGTAATT 58.788 37.037 3.76 0.00 0.00 1.40
5068 8851 5.689383 TGGAATTATCTTATTTGCCGAGC 57.311 39.130 0.00 0.00 0.00 5.03
5070 8853 3.813529 ATTATCTTATTTGCCGAGCGC 57.186 42.857 0.00 0.00 38.31 5.92
5511 9318 1.043673 GCCGAGGAGGAGGAAGCTAA 61.044 60.000 0.00 0.00 45.00 3.09
5568 9375 8.803012 CGTATATACGCGGTAATATATGCTAG 57.197 38.462 21.35 0.00 43.14 3.42
5569 9376 8.438513 CGTATATACGCGGTAATATATGCTAGT 58.561 37.037 21.35 0.00 43.14 2.57
5574 9381 7.798596 ACGCGGTAATATATGCTAGTATAGT 57.201 36.000 12.47 0.00 41.93 2.12
5575 9382 8.893219 ACGCGGTAATATATGCTAGTATAGTA 57.107 34.615 12.47 0.94 41.93 1.82
5613 9451 6.209589 GGATAGTGTCATTCTACTAGCATGGA 59.790 42.308 0.00 0.00 37.49 3.41
5720 9563 0.316524 GCTTCAAAGATGATCCGCGC 60.317 55.000 0.00 0.00 34.96 6.86
6065 11297 7.630082 TCCATACTCAGGTAGCTTGTTATTTT 58.370 34.615 0.00 0.00 0.00 1.82
6148 11383 8.934023 TTGAGATGGACCTATTTTTAACAACT 57.066 30.769 0.00 0.00 0.00 3.16
6150 11385 9.444600 TGAGATGGACCTATTTTTAACAACTAC 57.555 33.333 0.00 0.00 0.00 2.73
6151 11386 9.444600 GAGATGGACCTATTTTTAACAACTACA 57.555 33.333 0.00 0.00 0.00 2.74
6152 11387 9.449719 AGATGGACCTATTTTTAACAACTACAG 57.550 33.333 0.00 0.00 0.00 2.74
6230 11465 5.393902 TTGTACGTTCGTTTTTCCTTCTC 57.606 39.130 2.62 0.00 0.00 2.87
6232 11467 4.741676 TGTACGTTCGTTTTTCCTTCTCTC 59.258 41.667 2.62 0.00 0.00 3.20
6270 13582 4.124238 CAAACGGTCCAGACACTTTTAGA 58.876 43.478 0.00 0.00 0.00 2.10
6278 13590 5.940470 GTCCAGACACTTTTAGACATCCAAT 59.060 40.000 0.00 0.00 0.00 3.16
6322 13634 6.660521 TCAGCATGGTCTAGATGTTCAAAATT 59.339 34.615 0.00 0.00 36.16 1.82
6332 13644 4.218417 AGATGTTCAAAATTCCAAGGACCG 59.782 41.667 0.00 0.00 0.00 4.79
6379 13691 1.524482 GGGAGTCCTGACATCTGCC 59.476 63.158 9.58 0.00 33.07 4.85
6384 13696 1.632409 AGTCCTGACATCTGCCACATT 59.368 47.619 0.00 0.00 0.00 2.71
6420 13732 0.107361 GACCCACCCAAATCCCTACG 60.107 60.000 0.00 0.00 0.00 3.51
6450 13762 4.082081 CCACACAATTGCACAATCTGGTAT 60.082 41.667 5.05 0.00 0.00 2.73
6466 13778 0.668535 GTATTCTTTCCCATGCCCGC 59.331 55.000 0.00 0.00 0.00 6.13
6485 13797 3.145551 CCCCATGCTCTTGCTGGC 61.146 66.667 0.00 0.00 40.48 4.85
6486 13798 2.044252 CCCATGCTCTTGCTGGCT 60.044 61.111 0.00 0.00 40.48 4.75
6512 13834 3.118811 GCCTCTTCTAGCATGTTCTGTCT 60.119 47.826 0.00 0.00 0.00 3.41
6586 13908 3.382832 CCAGGCCCGACGAAGACT 61.383 66.667 0.00 0.00 0.00 3.24
6587 13909 2.050350 CCAGGCCCGACGAAGACTA 61.050 63.158 0.00 0.00 0.00 2.59
6603 13925 2.703007 AGACTATGAAGGAGGGTGCATC 59.297 50.000 0.00 0.00 0.00 3.91
6641 13963 2.738521 CGTGTGAAGGTGAGGGCG 60.739 66.667 0.00 0.00 0.00 6.13
6652 13974 0.321996 GTGAGGGCGAAGAAGAAGGT 59.678 55.000 0.00 0.00 0.00 3.50
6655 13977 2.041115 GGGCGAAGAAGAAGGTGCC 61.041 63.158 0.00 0.00 41.72 5.01
6765 14091 0.319986 TCGACATGTAGCAACCGCAA 60.320 50.000 0.00 0.00 42.27 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
308 310 2.224606 GCTACATACATGTGCATGCCT 58.775 47.619 16.68 0.00 42.39 4.75
444 446 4.318332 TGTTGATGGTGCTTTCTCTACAG 58.682 43.478 0.00 0.00 0.00 2.74
813 815 5.675684 TGATACAGGTCAGACATAAGCAA 57.324 39.130 2.17 0.00 0.00 3.91
1095 1098 0.378610 GAGCTTGAACCAATAGGCGC 59.621 55.000 0.00 0.00 39.06 6.53
1375 1385 3.632145 ACTTCGGCAAAGAACAGATTGTT 59.368 39.130 5.20 0.00 44.37 2.83
1627 5405 2.495155 TACATGGCTGTGCATGAACT 57.505 45.000 5.18 0.00 36.79 3.01
1658 5436 2.586648 AGGCCCTTTTTCTACCAGTG 57.413 50.000 0.00 0.00 0.00 3.66
1659 5437 5.037598 ACTATAGGCCCTTTTTCTACCAGT 58.962 41.667 0.00 0.00 0.00 4.00
1660 5438 5.454897 GGACTATAGGCCCTTTTTCTACCAG 60.455 48.000 14.46 0.00 0.00 4.00
1661 5439 4.411212 GGACTATAGGCCCTTTTTCTACCA 59.589 45.833 14.46 0.00 0.00 3.25
1662 5440 4.202440 GGGACTATAGGCCCTTTTTCTACC 60.202 50.000 33.73 5.44 41.31 3.18
1663 5441 4.502777 CGGGACTATAGGCCCTTTTTCTAC 60.503 50.000 36.19 11.37 42.40 2.59
1664 5442 3.644738 CGGGACTATAGGCCCTTTTTCTA 59.355 47.826 36.19 0.00 42.40 2.10
1665 5443 2.438392 CGGGACTATAGGCCCTTTTTCT 59.562 50.000 36.19 0.00 42.40 2.52
1666 5444 2.486727 CCGGGACTATAGGCCCTTTTTC 60.487 54.545 36.19 13.48 42.40 2.29
1667 5445 1.493446 CCGGGACTATAGGCCCTTTTT 59.507 52.381 36.19 0.00 42.40 1.94
1668 5446 1.137697 CCGGGACTATAGGCCCTTTT 58.862 55.000 36.19 0.00 42.40 2.27
1669 5447 0.030399 ACCGGGACTATAGGCCCTTT 60.030 55.000 36.19 22.52 42.40 3.11
1670 5448 0.030399 AACCGGGACTATAGGCCCTT 60.030 55.000 36.19 24.27 42.40 3.95
1671 5449 0.471401 GAACCGGGACTATAGGCCCT 60.471 60.000 36.19 21.66 42.40 5.19
1672 5450 1.813728 CGAACCGGGACTATAGGCCC 61.814 65.000 31.77 31.77 41.11 5.80
1673 5451 1.111715 ACGAACCGGGACTATAGGCC 61.112 60.000 17.25 17.25 0.00 5.19
1674 5452 1.609208 TACGAACCGGGACTATAGGC 58.391 55.000 6.32 0.00 0.00 3.93
1675 5453 2.555757 CCTTACGAACCGGGACTATAGG 59.444 54.545 6.32 1.59 0.00 2.57
1676 5454 2.555757 CCCTTACGAACCGGGACTATAG 59.444 54.545 6.32 0.00 40.55 1.31
1677 5455 2.091885 ACCCTTACGAACCGGGACTATA 60.092 50.000 6.32 0.00 40.55 1.31
1678 5456 1.342374 ACCCTTACGAACCGGGACTAT 60.342 52.381 6.32 0.00 40.55 2.12
1679 5457 0.039618 ACCCTTACGAACCGGGACTA 59.960 55.000 6.32 0.00 40.55 2.59
1680 5458 1.228988 ACCCTTACGAACCGGGACT 60.229 57.895 6.32 0.00 40.55 3.85
1681 5459 1.216444 GACCCTTACGAACCGGGAC 59.784 63.158 6.32 0.00 40.55 4.46
1682 5460 0.542702 AAGACCCTTACGAACCGGGA 60.543 55.000 6.32 0.00 40.55 5.14
1683 5461 0.322648 AAAGACCCTTACGAACCGGG 59.677 55.000 6.32 0.00 43.79 5.73
1684 5462 2.232208 ACTAAAGACCCTTACGAACCGG 59.768 50.000 0.00 0.00 0.00 5.28
1685 5463 3.505836 GACTAAAGACCCTTACGAACCG 58.494 50.000 0.00 0.00 0.00 4.44
1686 5464 3.368843 GGGACTAAAGACCCTTACGAACC 60.369 52.174 9.90 0.00 44.84 3.62
1687 5465 3.674410 CGGGACTAAAGACCCTTACGAAC 60.674 52.174 14.31 0.00 45.84 3.95
1688 5466 2.493278 CGGGACTAAAGACCCTTACGAA 59.507 50.000 14.31 0.00 45.84 3.85
1689 5467 2.094675 CGGGACTAAAGACCCTTACGA 58.905 52.381 14.31 0.00 45.84 3.43
1690 5468 1.135721 CCGGGACTAAAGACCCTTACG 59.864 57.143 14.31 2.80 45.84 3.18
1691 5469 2.182827 ACCGGGACTAAAGACCCTTAC 58.817 52.381 6.32 0.00 45.84 2.34
1692 5470 2.629017 ACCGGGACTAAAGACCCTTA 57.371 50.000 6.32 0.00 45.84 2.69
1693 5471 1.627329 GAACCGGGACTAAAGACCCTT 59.373 52.381 6.32 4.28 45.84 3.95
1694 5472 1.273759 GAACCGGGACTAAAGACCCT 58.726 55.000 6.32 0.00 45.84 4.34
1695 5473 0.251354 GGAACCGGGACTAAAGACCC 59.749 60.000 6.32 7.38 44.81 4.46
1696 5474 0.108472 CGGAACCGGGACTAAAGACC 60.108 60.000 6.32 0.00 35.56 3.85
1697 5475 3.430779 CGGAACCGGGACTAAAGAC 57.569 57.895 6.32 0.00 35.56 3.01
1710 5488 2.038164 ACTTTAGTCCTGGTTCCGGAAC 59.962 50.000 34.71 34.71 40.45 3.62
1711 5489 2.038033 CACTTTAGTCCTGGTTCCGGAA 59.962 50.000 14.35 14.35 31.13 4.30
1712 5490 1.621814 CACTTTAGTCCTGGTTCCGGA 59.378 52.381 0.00 0.00 0.00 5.14
1713 5491 1.346722 ACACTTTAGTCCTGGTTCCGG 59.653 52.381 0.00 0.00 0.00 5.14
1714 5492 2.685100 GACACTTTAGTCCTGGTTCCG 58.315 52.381 0.00 0.00 32.36 4.30
1715 5493 2.612221 CCGACACTTTAGTCCTGGTTCC 60.612 54.545 0.00 0.00 35.07 3.62
1716 5494 2.036862 ACCGACACTTTAGTCCTGGTTC 59.963 50.000 0.00 0.00 31.00 3.62
1717 5495 2.044758 ACCGACACTTTAGTCCTGGTT 58.955 47.619 0.00 0.00 31.00 3.67
1718 5496 1.713297 ACCGACACTTTAGTCCTGGT 58.287 50.000 0.00 0.00 35.07 4.00
1719 5497 2.824341 AGTACCGACACTTTAGTCCTGG 59.176 50.000 0.00 0.00 35.07 4.45
1720 5498 5.633830 TTAGTACCGACACTTTAGTCCTG 57.366 43.478 0.00 0.00 35.07 3.86
1721 5499 6.319911 GGTATTAGTACCGACACTTTAGTCCT 59.680 42.308 0.00 0.00 40.95 3.85
1722 5500 6.499172 GGTATTAGTACCGACACTTTAGTCC 58.501 44.000 0.00 0.00 40.95 3.85
1749 5527 1.202769 TGAACCGGGACTAAAGGGGG 61.203 60.000 6.32 0.00 0.00 5.40
1750 5528 0.694196 TTGAACCGGGACTAAAGGGG 59.306 55.000 6.32 0.00 0.00 4.79
1751 5529 2.640184 GATTGAACCGGGACTAAAGGG 58.360 52.381 6.32 0.00 0.00 3.95
1752 5530 2.026636 TGGATTGAACCGGGACTAAAGG 60.027 50.000 6.32 0.00 0.00 3.11
1753 5531 3.055385 TCTGGATTGAACCGGGACTAAAG 60.055 47.826 6.32 0.00 36.97 1.85
1754 5532 2.907696 TCTGGATTGAACCGGGACTAAA 59.092 45.455 6.32 0.00 36.97 1.85
1755 5533 2.542550 TCTGGATTGAACCGGGACTAA 58.457 47.619 6.32 0.00 36.97 2.24
1756 5534 2.235402 GTTCTGGATTGAACCGGGACTA 59.765 50.000 6.32 0.00 40.62 2.59
1757 5535 1.003233 GTTCTGGATTGAACCGGGACT 59.997 52.381 6.32 0.00 40.62 3.85
1758 5536 1.450025 GTTCTGGATTGAACCGGGAC 58.550 55.000 6.32 0.00 40.10 4.46
1759 5537 3.948735 GTTCTGGATTGAACCGGGA 57.051 52.632 6.32 0.00 40.10 5.14
1764 5542 1.003233 AGTCCCGGTTCTGGATTGAAC 59.997 52.381 0.00 0.00 43.88 3.18
1765 5543 1.358152 AGTCCCGGTTCTGGATTGAA 58.642 50.000 0.00 0.00 33.65 2.69
1766 5544 2.241281 TAGTCCCGGTTCTGGATTGA 57.759 50.000 0.00 0.00 33.65 2.57
1767 5545 3.270877 CTTTAGTCCCGGTTCTGGATTG 58.729 50.000 0.00 0.00 33.65 2.67
1768 5546 2.238898 CCTTTAGTCCCGGTTCTGGATT 59.761 50.000 0.00 0.00 33.65 3.01
1769 5547 1.838077 CCTTTAGTCCCGGTTCTGGAT 59.162 52.381 0.00 0.00 33.65 3.41
1770 5548 1.272807 CCTTTAGTCCCGGTTCTGGA 58.727 55.000 0.00 0.00 0.00 3.86
1771 5549 0.392595 GCCTTTAGTCCCGGTTCTGG 60.393 60.000 0.00 0.00 0.00 3.86
1772 5550 0.392595 GGCCTTTAGTCCCGGTTCTG 60.393 60.000 0.00 0.00 0.00 3.02
1773 5551 1.559965 GGGCCTTTAGTCCCGGTTCT 61.560 60.000 0.84 0.15 32.00 3.01
1774 5552 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
1775 5553 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
1779 5557 0.392595 CGTGAAGGGCCTTTAGTCCC 60.393 60.000 21.92 6.85 42.94 4.46
1780 5558 0.323957 ACGTGAAGGGCCTTTAGTCC 59.676 55.000 21.92 7.65 0.00 3.85
1781 5559 1.439679 CACGTGAAGGGCCTTTAGTC 58.560 55.000 21.92 8.25 0.00 2.59
1782 5560 0.036306 CCACGTGAAGGGCCTTTAGT 59.964 55.000 21.92 17.11 0.00 2.24
1783 5561 0.676782 CCCACGTGAAGGGCCTTTAG 60.677 60.000 21.92 16.46 39.96 1.85
1784 5562 1.377229 CCCACGTGAAGGGCCTTTA 59.623 57.895 21.92 14.37 39.96 1.85
1785 5563 2.115266 CCCACGTGAAGGGCCTTT 59.885 61.111 21.92 0.00 39.96 3.11
1791 5569 3.357079 GCACTGCCCACGTGAAGG 61.357 66.667 19.30 12.09 34.35 3.46
1792 5570 3.716006 CGCACTGCCCACGTGAAG 61.716 66.667 19.30 13.75 34.35 3.02
1803 5581 4.694233 ACTGGGCTCTGCGCACTG 62.694 66.667 5.66 2.72 46.09 3.66
1804 5582 4.385405 GACTGGGCTCTGCGCACT 62.385 66.667 5.66 0.00 46.09 4.40
1805 5583 4.687215 TGACTGGGCTCTGCGCAC 62.687 66.667 5.66 0.00 46.09 5.34
1808 5586 3.368190 CTCCTGACTGGGCTCTGCG 62.368 68.421 0.00 0.00 36.20 5.18
1809 5587 1.986757 TCTCCTGACTGGGCTCTGC 60.987 63.158 0.00 0.00 36.20 4.26
1810 5588 1.612395 GGTCTCCTGACTGGGCTCTG 61.612 65.000 0.00 0.00 42.54 3.35
1811 5589 1.305718 GGTCTCCTGACTGGGCTCT 60.306 63.158 0.00 0.00 42.54 4.09
1812 5590 2.363172 GGGTCTCCTGACTGGGCTC 61.363 68.421 0.00 0.00 42.54 4.70
1813 5591 2.284995 GGGTCTCCTGACTGGGCT 60.285 66.667 0.00 0.00 42.54 5.19
1814 5592 1.492993 AAAGGGTCTCCTGACTGGGC 61.493 60.000 0.00 0.00 44.07 5.36
1815 5593 0.326264 CAAAGGGTCTCCTGACTGGG 59.674 60.000 0.00 0.00 44.07 4.45
1816 5594 0.326264 CCAAAGGGTCTCCTGACTGG 59.674 60.000 0.00 0.00 44.07 4.00
1817 5595 3.944476 CCAAAGGGTCTCCTGACTG 57.056 57.895 0.00 0.00 44.07 3.51
1828 5606 2.282887 CCAACCGGGACCAAAGGG 60.283 66.667 6.32 0.00 40.01 3.95
1829 5607 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
1830 5608 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
1831 5609 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
1832 5610 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
1847 5625 2.487274 TATTGGTCCCGGTTGGTGCC 62.487 60.000 0.00 0.00 34.77 5.01
1848 5626 1.001887 TATTGGTCCCGGTTGGTGC 60.002 57.895 0.00 0.00 34.77 5.01
1849 5627 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
1850 5628 1.996086 CCTATTGGTCCCGGTTGGT 59.004 57.895 0.00 0.00 34.77 3.67
1851 5629 1.453197 GCCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 35.27 3.77
1852 5630 0.106719 ATGCCTATTGGTCCCGGTTG 60.107 55.000 0.00 0.00 35.27 3.77
1853 5631 0.182775 GATGCCTATTGGTCCCGGTT 59.817 55.000 0.00 0.00 35.27 4.44
1854 5632 1.705997 GGATGCCTATTGGTCCCGGT 61.706 60.000 0.00 0.00 35.27 5.28
1855 5633 1.073199 GGATGCCTATTGGTCCCGG 59.927 63.158 0.00 0.00 35.27 5.73
1856 5634 0.535102 GTGGATGCCTATTGGTCCCG 60.535 60.000 1.28 0.00 35.27 5.14
1857 5635 0.535102 CGTGGATGCCTATTGGTCCC 60.535 60.000 1.28 0.00 35.27 4.46
1858 5636 1.166531 GCGTGGATGCCTATTGGTCC 61.167 60.000 0.00 0.00 35.27 4.46
1859 5637 1.498865 CGCGTGGATGCCTATTGGTC 61.499 60.000 0.00 0.00 35.27 4.02
1860 5638 1.523711 CGCGTGGATGCCTATTGGT 60.524 57.895 0.00 0.00 35.27 3.67
1861 5639 1.498865 GACGCGTGGATGCCTATTGG 61.499 60.000 20.70 0.00 0.00 3.16
1862 5640 0.809636 TGACGCGTGGATGCCTATTG 60.810 55.000 20.70 0.00 0.00 1.90
1863 5641 0.530650 CTGACGCGTGGATGCCTATT 60.531 55.000 20.70 0.00 0.00 1.73
1864 5642 1.068083 CTGACGCGTGGATGCCTAT 59.932 57.895 20.70 0.00 0.00 2.57
1865 5643 2.494445 CTGACGCGTGGATGCCTA 59.506 61.111 20.70 0.00 0.00 3.93
1868 5646 4.152625 GTGCTGACGCGTGGATGC 62.153 66.667 20.70 15.70 39.65 3.91
1869 5647 1.959899 GAAGTGCTGACGCGTGGATG 61.960 60.000 20.70 4.59 39.65 3.51
1870 5648 1.738099 GAAGTGCTGACGCGTGGAT 60.738 57.895 20.70 0.00 39.65 3.41
1871 5649 2.355837 GAAGTGCTGACGCGTGGA 60.356 61.111 20.70 0.00 39.65 4.02
1872 5650 2.356313 AGAAGTGCTGACGCGTGG 60.356 61.111 20.70 10.85 39.65 4.94
1881 5659 2.433446 CCCAGCCACAGAAGTGCT 59.567 61.111 0.00 0.00 44.53 4.40
2156 5934 7.907841 ATATGAAACACCTAAATTAACCCCC 57.092 36.000 0.00 0.00 0.00 5.40
2166 5944 9.899661 AGCTAACACAATATATGAAACACCTAA 57.100 29.630 0.00 0.00 0.00 2.69
2168 5946 9.547753 CTAGCTAACACAATATATGAAACACCT 57.452 33.333 0.00 0.00 0.00 4.00
2169 5947 9.326413 ACTAGCTAACACAATATATGAAACACC 57.674 33.333 0.00 0.00 0.00 4.16
2199 5977 9.453830 AATAGAGGACACTTCTCCCTATTAATT 57.546 33.333 0.00 0.00 34.87 1.40
2202 5980 9.535170 CATAATAGAGGACACTTCTCCCTATTA 57.465 37.037 13.14 13.14 38.60 0.98
2203 5981 8.013667 ACATAATAGAGGACACTTCTCCCTATT 58.986 37.037 0.00 0.00 37.45 1.73
2204 5982 7.540183 ACATAATAGAGGACACTTCTCCCTAT 58.460 38.462 0.00 0.00 30.76 2.57
2205 5983 6.923670 ACATAATAGAGGACACTTCTCCCTA 58.076 40.000 0.00 0.00 31.96 3.53
2206 5984 5.782925 ACATAATAGAGGACACTTCTCCCT 58.217 41.667 0.00 0.00 31.96 4.20
2207 5985 5.011227 GGACATAATAGAGGACACTTCTCCC 59.989 48.000 0.00 0.00 31.96 4.30
2208 5986 5.598830 TGGACATAATAGAGGACACTTCTCC 59.401 44.000 0.00 0.00 31.96 3.71
2209 5987 6.716934 TGGACATAATAGAGGACACTTCTC 57.283 41.667 0.00 0.00 0.00 2.87
2210 5988 6.463614 GCATGGACATAATAGAGGACACTTCT 60.464 42.308 0.00 0.00 0.00 2.85
2211 5989 5.698545 GCATGGACATAATAGAGGACACTTC 59.301 44.000 0.00 0.00 0.00 3.01
2212 5990 5.367937 AGCATGGACATAATAGAGGACACTT 59.632 40.000 0.00 0.00 0.00 3.16
2213 5991 4.904251 AGCATGGACATAATAGAGGACACT 59.096 41.667 0.00 0.00 0.00 3.55
2214 5992 5.220710 AGCATGGACATAATAGAGGACAC 57.779 43.478 0.00 0.00 0.00 3.67
2215 5993 5.614308 CAAGCATGGACATAATAGAGGACA 58.386 41.667 0.00 0.00 0.00 4.02
2231 6009 1.742900 CGTAGCGTCGACCAAGCATG 61.743 60.000 10.58 0.00 0.00 4.06
2232 6010 1.516386 CGTAGCGTCGACCAAGCAT 60.516 57.895 10.58 1.19 0.00 3.79
2233 6011 2.126618 CGTAGCGTCGACCAAGCA 60.127 61.111 10.58 0.00 0.00 3.91
2249 6027 9.647679 CCTCTTTATATACGTATGTATAGTGCG 57.352 37.037 18.37 11.62 44.52 5.34
2259 6037 9.149225 CGTGTCTAGTCCTCTTTATATACGTAT 57.851 37.037 13.54 13.54 0.00 3.06
2260 6038 7.116948 GCGTGTCTAGTCCTCTTTATATACGTA 59.883 40.741 0.00 0.00 0.00 3.57
2261 6039 6.073331 GCGTGTCTAGTCCTCTTTATATACGT 60.073 42.308 0.00 0.00 0.00 3.57
2262 6040 6.147492 AGCGTGTCTAGTCCTCTTTATATACG 59.853 42.308 0.00 0.00 0.00 3.06
2263 6041 7.437793 AGCGTGTCTAGTCCTCTTTATATAC 57.562 40.000 0.00 0.00 0.00 1.47
2264 6042 7.333921 GCTAGCGTGTCTAGTCCTCTTTATATA 59.666 40.741 0.00 0.00 45.22 0.86
2265 6043 6.149807 GCTAGCGTGTCTAGTCCTCTTTATAT 59.850 42.308 0.00 0.00 45.22 0.86
2266 6044 5.469421 GCTAGCGTGTCTAGTCCTCTTTATA 59.531 44.000 0.00 0.00 45.22 0.98
2267 6045 4.276431 GCTAGCGTGTCTAGTCCTCTTTAT 59.724 45.833 0.00 0.00 45.22 1.40
2268 6046 3.626670 GCTAGCGTGTCTAGTCCTCTTTA 59.373 47.826 0.00 0.00 45.22 1.85
2269 6047 2.424246 GCTAGCGTGTCTAGTCCTCTTT 59.576 50.000 0.00 0.00 45.22 2.52
2270 6048 2.018515 GCTAGCGTGTCTAGTCCTCTT 58.981 52.381 0.00 0.00 45.22 2.85
2271 6049 1.210967 AGCTAGCGTGTCTAGTCCTCT 59.789 52.381 9.55 0.00 45.22 3.69
2272 6050 1.670791 AGCTAGCGTGTCTAGTCCTC 58.329 55.000 9.55 0.00 45.22 3.71
2273 6051 2.435069 TCTAGCTAGCGTGTCTAGTCCT 59.565 50.000 16.35 0.00 45.22 3.85
2274 6052 2.836262 TCTAGCTAGCGTGTCTAGTCC 58.164 52.381 16.35 0.00 45.22 3.85
2275 6053 5.232463 ACTATCTAGCTAGCGTGTCTAGTC 58.768 45.833 16.35 0.00 45.22 2.59
2276 6054 5.217978 ACTATCTAGCTAGCGTGTCTAGT 57.782 43.478 16.35 10.90 45.22 2.57
2277 6055 6.183360 GCTTACTATCTAGCTAGCGTGTCTAG 60.183 46.154 16.35 13.57 46.01 2.43
2278 6056 5.638657 GCTTACTATCTAGCTAGCGTGTCTA 59.361 44.000 16.35 0.00 34.57 2.59
2279 6057 4.453136 GCTTACTATCTAGCTAGCGTGTCT 59.547 45.833 16.35 0.00 34.57 3.41
2280 6058 4.213694 TGCTTACTATCTAGCTAGCGTGTC 59.786 45.833 16.35 7.10 38.22 3.67
2281 6059 4.135306 TGCTTACTATCTAGCTAGCGTGT 58.865 43.478 16.35 14.78 38.22 4.49
2282 6060 4.750952 TGCTTACTATCTAGCTAGCGTG 57.249 45.455 16.35 9.99 38.22 5.34
2283 6061 5.521544 GTTTGCTTACTATCTAGCTAGCGT 58.478 41.667 16.35 14.08 38.22 5.07
2284 6062 4.613448 CGTTTGCTTACTATCTAGCTAGCG 59.387 45.833 16.35 9.11 39.34 4.26
2285 6063 5.759963 TCGTTTGCTTACTATCTAGCTAGC 58.240 41.667 16.35 6.62 38.22 3.42
2286 6064 6.858993 CCTTCGTTTGCTTACTATCTAGCTAG 59.141 42.308 15.01 15.01 38.22 3.42
2287 6065 6.544931 TCCTTCGTTTGCTTACTATCTAGCTA 59.455 38.462 0.00 0.00 38.22 3.32
2288 6066 5.360144 TCCTTCGTTTGCTTACTATCTAGCT 59.640 40.000 0.00 0.00 38.22 3.32
2289 6067 5.589192 TCCTTCGTTTGCTTACTATCTAGC 58.411 41.667 0.00 0.00 37.89 3.42
2290 6068 7.544566 TGTTTCCTTCGTTTGCTTACTATCTAG 59.455 37.037 0.00 0.00 0.00 2.43
2291 6069 7.380536 TGTTTCCTTCGTTTGCTTACTATCTA 58.619 34.615 0.00 0.00 0.00 1.98
2292 6070 6.228258 TGTTTCCTTCGTTTGCTTACTATCT 58.772 36.000 0.00 0.00 0.00 1.98
2293 6071 6.367969 TCTGTTTCCTTCGTTTGCTTACTATC 59.632 38.462 0.00 0.00 0.00 2.08
2294 6072 6.228258 TCTGTTTCCTTCGTTTGCTTACTAT 58.772 36.000 0.00 0.00 0.00 2.12
2295 6073 5.603596 TCTGTTTCCTTCGTTTGCTTACTA 58.396 37.500 0.00 0.00 0.00 1.82
2296 6074 4.448210 TCTGTTTCCTTCGTTTGCTTACT 58.552 39.130 0.00 0.00 0.00 2.24
2297 6075 4.806342 TCTGTTTCCTTCGTTTGCTTAC 57.194 40.909 0.00 0.00 0.00 2.34
2298 6076 5.120399 TCTTCTGTTTCCTTCGTTTGCTTA 58.880 37.500 0.00 0.00 0.00 3.09
2299 6077 3.945285 TCTTCTGTTTCCTTCGTTTGCTT 59.055 39.130 0.00 0.00 0.00 3.91
2300 6078 3.541632 TCTTCTGTTTCCTTCGTTTGCT 58.458 40.909 0.00 0.00 0.00 3.91
2301 6079 3.963383 TCTTCTGTTTCCTTCGTTTGC 57.037 42.857 0.00 0.00 0.00 3.68
2302 6080 4.211374 ACGATCTTCTGTTTCCTTCGTTTG 59.789 41.667 0.00 0.00 35.04 2.93
2303 6081 4.377897 ACGATCTTCTGTTTCCTTCGTTT 58.622 39.130 0.00 0.00 35.04 3.60
2304 6082 3.988517 GACGATCTTCTGTTTCCTTCGTT 59.011 43.478 0.00 0.00 38.34 3.85
2305 6083 3.005472 TGACGATCTTCTGTTTCCTTCGT 59.995 43.478 0.48 0.00 40.62 3.85
2306 6084 3.575630 TGACGATCTTCTGTTTCCTTCG 58.424 45.455 0.48 0.00 0.00 3.79
2307 6085 5.171476 TCATGACGATCTTCTGTTTCCTTC 58.829 41.667 0.48 0.00 0.00 3.46
2308 6086 5.152623 TCATGACGATCTTCTGTTTCCTT 57.847 39.130 0.48 0.00 0.00 3.36
2309 6087 4.808414 TCATGACGATCTTCTGTTTCCT 57.192 40.909 0.48 0.00 0.00 3.36
2310 6088 4.690748 TGTTCATGACGATCTTCTGTTTCC 59.309 41.667 0.00 0.00 0.00 3.13
2311 6089 5.845985 TGTTCATGACGATCTTCTGTTTC 57.154 39.130 0.00 0.00 0.00 2.78
2312 6090 9.770097 ATATATGTTCATGACGATCTTCTGTTT 57.230 29.630 0.00 0.00 0.00 2.83
2313 6091 9.201127 CATATATGTTCATGACGATCTTCTGTT 57.799 33.333 4.43 0.00 0.00 3.16
2314 6092 7.330454 GCATATATGTTCATGACGATCTTCTGT 59.670 37.037 14.14 0.00 0.00 3.41
2315 6093 7.330208 TGCATATATGTTCATGACGATCTTCTG 59.670 37.037 14.14 0.00 0.00 3.02
2316 6094 7.381323 TGCATATATGTTCATGACGATCTTCT 58.619 34.615 14.14 0.00 0.00 2.85
2317 6095 7.586714 TGCATATATGTTCATGACGATCTTC 57.413 36.000 14.14 0.00 0.00 2.87
2318 6096 9.828039 ATATGCATATATGTTCATGACGATCTT 57.172 29.630 17.72 0.00 0.00 2.40
2339 6117 9.877137 CGATATCACTTCTCTCTGTATATATGC 57.123 37.037 3.12 0.00 0.00 3.14
2342 6120 9.602568 GGTCGATATCACTTCTCTCTGTATATA 57.397 37.037 3.12 0.00 0.00 0.86
2343 6121 8.103935 TGGTCGATATCACTTCTCTCTGTATAT 58.896 37.037 3.12 0.00 0.00 0.86
2344 6122 7.388224 GTGGTCGATATCACTTCTCTCTGTATA 59.612 40.741 3.12 0.00 33.64 1.47
2345 6123 6.205853 GTGGTCGATATCACTTCTCTCTGTAT 59.794 42.308 3.12 0.00 33.64 2.29
2346 6124 5.527951 GTGGTCGATATCACTTCTCTCTGTA 59.472 44.000 3.12 0.00 33.64 2.74
2347 6125 4.336993 GTGGTCGATATCACTTCTCTCTGT 59.663 45.833 3.12 0.00 33.64 3.41
2348 6126 4.261405 GGTGGTCGATATCACTTCTCTCTG 60.261 50.000 3.12 0.00 36.90 3.35
2349 6127 3.886505 GGTGGTCGATATCACTTCTCTCT 59.113 47.826 3.12 0.00 36.90 3.10
2350 6128 3.886505 AGGTGGTCGATATCACTTCTCTC 59.113 47.826 3.12 0.74 36.90 3.20
2351 6129 3.886505 GAGGTGGTCGATATCACTTCTCT 59.113 47.826 15.82 6.90 39.21 3.10
2352 6130 4.231718 GAGGTGGTCGATATCACTTCTC 57.768 50.000 15.82 11.24 39.21 2.87
2353 6131 3.904717 AGAGGTGGTCGATATCACTTCT 58.095 45.455 18.29 18.29 45.56 2.85
2354 6132 3.004944 GGAGAGGTGGTCGATATCACTTC 59.995 52.174 15.52 15.52 41.84 3.01
2355 6133 2.959707 GGAGAGGTGGTCGATATCACTT 59.040 50.000 3.12 8.14 36.90 3.16
2356 6134 2.175931 AGGAGAGGTGGTCGATATCACT 59.824 50.000 3.12 0.81 36.90 3.41
2357 6135 2.588620 AGGAGAGGTGGTCGATATCAC 58.411 52.381 3.12 7.65 35.87 3.06
2358 6136 3.117474 AGAAGGAGAGGTGGTCGATATCA 60.117 47.826 3.12 0.00 0.00 2.15
2359 6137 3.492337 AGAAGGAGAGGTGGTCGATATC 58.508 50.000 0.00 0.00 0.00 1.63
2360 6138 3.139397 AGAGAAGGAGAGGTGGTCGATAT 59.861 47.826 0.00 0.00 0.00 1.63
2361 6139 2.510382 AGAGAAGGAGAGGTGGTCGATA 59.490 50.000 0.00 0.00 0.00 2.92
2362 6140 1.286553 AGAGAAGGAGAGGTGGTCGAT 59.713 52.381 0.00 0.00 0.00 3.59
2363 6141 0.699399 AGAGAAGGAGAGGTGGTCGA 59.301 55.000 0.00 0.00 0.00 4.20
2364 6142 0.814457 CAGAGAAGGAGAGGTGGTCG 59.186 60.000 0.00 0.00 0.00 4.79
2365 6143 2.099405 CTCAGAGAAGGAGAGGTGGTC 58.901 57.143 0.00 0.00 34.24 4.02
2366 6144 1.713647 TCTCAGAGAAGGAGAGGTGGT 59.286 52.381 0.00 0.00 36.52 4.16
2367 6145 2.523325 TCTCAGAGAAGGAGAGGTGG 57.477 55.000 0.00 0.00 36.52 4.61
2372 6150 4.277476 GACCAATCTCTCAGAGAAGGAGA 58.723 47.826 25.76 8.00 42.27 3.71
2373 6151 3.066621 CGACCAATCTCTCAGAGAAGGAG 59.933 52.174 25.76 17.31 42.27 3.69
2374 6152 3.020274 CGACCAATCTCTCAGAGAAGGA 58.980 50.000 25.76 7.73 42.27 3.36
2375 6153 3.020274 TCGACCAATCTCTCAGAGAAGG 58.980 50.000 20.00 20.00 42.27 3.46
2376 6154 4.082517 TGTTCGACCAATCTCTCAGAGAAG 60.083 45.833 8.90 4.47 42.27 2.85
2377 6155 3.826729 TGTTCGACCAATCTCTCAGAGAA 59.173 43.478 8.90 0.00 42.27 2.87
2378 6156 3.421844 TGTTCGACCAATCTCTCAGAGA 58.578 45.455 6.90 6.90 43.20 3.10
2379 6157 3.857549 TGTTCGACCAATCTCTCAGAG 57.142 47.619 0.00 0.00 0.00 3.35
2380 6158 3.320826 TGTTGTTCGACCAATCTCTCAGA 59.679 43.478 0.00 0.00 0.00 3.27
2381 6159 3.653344 TGTTGTTCGACCAATCTCTCAG 58.347 45.455 0.00 0.00 0.00 3.35
2382 6160 3.744238 TGTTGTTCGACCAATCTCTCA 57.256 42.857 0.00 0.00 0.00 3.27
2383 6161 4.058817 ACTTGTTGTTCGACCAATCTCTC 58.941 43.478 0.00 0.00 0.00 3.20
2384 6162 4.073293 ACTTGTTGTTCGACCAATCTCT 57.927 40.909 0.00 0.00 0.00 3.10
2385 6163 4.773510 GAACTTGTTGTTCGACCAATCTC 58.226 43.478 0.00 0.00 44.49 2.75
2386 6164 4.813296 GAACTTGTTGTTCGACCAATCT 57.187 40.909 0.00 0.00 44.49 2.40
2396 6174 9.737427 CAGATAGATATACGAGAACTTGTTGTT 57.263 33.333 0.00 0.00 42.38 2.83
2397 6175 9.121658 TCAGATAGATATACGAGAACTTGTTGT 57.878 33.333 0.00 0.00 0.00 3.32
2398 6176 9.388346 GTCAGATAGATATACGAGAACTTGTTG 57.612 37.037 0.00 0.00 0.00 3.33
2399 6177 9.121658 TGTCAGATAGATATACGAGAACTTGTT 57.878 33.333 0.00 0.00 0.00 2.83
2400 6178 8.561212 GTGTCAGATAGATATACGAGAACTTGT 58.439 37.037 0.00 0.32 0.00 3.16
2401 6179 7.742525 CGTGTCAGATAGATATACGAGAACTTG 59.257 40.741 0.00 0.00 34.80 3.16
2402 6180 7.656542 TCGTGTCAGATAGATATACGAGAACTT 59.343 37.037 0.00 0.00 36.07 2.66
2403 6181 7.153315 TCGTGTCAGATAGATATACGAGAACT 58.847 38.462 0.00 0.00 36.07 3.01
2404 6182 7.348808 TCGTGTCAGATAGATATACGAGAAC 57.651 40.000 0.00 0.00 36.07 3.01
2405 6183 7.440255 TGTTCGTGTCAGATAGATATACGAGAA 59.560 37.037 0.00 0.00 39.38 2.87
2406 6184 6.927381 TGTTCGTGTCAGATAGATATACGAGA 59.073 38.462 0.00 0.00 39.38 4.04
2407 6185 7.118422 TGTTCGTGTCAGATAGATATACGAG 57.882 40.000 0.00 0.00 39.38 4.18
2408 6186 6.347483 GCTGTTCGTGTCAGATAGATATACGA 60.347 42.308 0.00 0.00 37.80 3.43
2409 6187 5.790988 GCTGTTCGTGTCAGATAGATATACG 59.209 44.000 8.01 0.00 35.20 3.06
2410 6188 6.669278 TGCTGTTCGTGTCAGATAGATATAC 58.331 40.000 8.01 0.00 35.20 1.47
2411 6189 6.877611 TGCTGTTCGTGTCAGATAGATATA 57.122 37.500 8.01 0.00 35.20 0.86
2412 6190 5.774498 TGCTGTTCGTGTCAGATAGATAT 57.226 39.130 8.01 0.00 35.20 1.63
2413 6191 5.340803 GTTGCTGTTCGTGTCAGATAGATA 58.659 41.667 8.01 0.00 35.20 1.98
2414 6192 4.177026 GTTGCTGTTCGTGTCAGATAGAT 58.823 43.478 8.01 0.00 35.20 1.98
2415 6193 3.575630 GTTGCTGTTCGTGTCAGATAGA 58.424 45.455 8.01 0.00 35.20 1.98
2416 6194 2.342651 CGTTGCTGTTCGTGTCAGATAG 59.657 50.000 8.01 0.00 35.20 2.08
2417 6195 2.324860 CGTTGCTGTTCGTGTCAGATA 58.675 47.619 8.01 0.00 35.20 1.98
2418 6196 1.139989 CGTTGCTGTTCGTGTCAGAT 58.860 50.000 8.01 0.00 35.20 2.90
2419 6197 1.487452 GCGTTGCTGTTCGTGTCAGA 61.487 55.000 8.01 0.00 35.20 3.27
2420 6198 1.083401 GCGTTGCTGTTCGTGTCAG 60.083 57.895 0.00 0.00 36.18 3.51
2421 6199 2.530497 GGCGTTGCTGTTCGTGTCA 61.530 57.895 0.00 0.00 0.00 3.58
2422 6200 1.772063 AAGGCGTTGCTGTTCGTGTC 61.772 55.000 0.00 0.00 0.00 3.67
2423 6201 0.531090 TAAGGCGTTGCTGTTCGTGT 60.531 50.000 0.97 0.00 0.00 4.49
2479 6257 4.078537 CTGTGGAATGGAAATGGTGTACA 58.921 43.478 0.00 0.00 0.00 2.90
2487 6265 5.539955 ACTTTTACAGCTGTGGAATGGAAAT 59.460 36.000 29.57 3.21 0.00 2.17
2526 6304 6.128391 GCAACGAAATTGATGTGTACCTAAGA 60.128 38.462 0.00 0.00 41.23 2.10
2613 6391 7.931015 ATGTATGTATAACCTTCCTCCTTGA 57.069 36.000 0.00 0.00 0.00 3.02
2649 6427 1.239296 GCAGCAATCACAGCACCTGA 61.239 55.000 0.00 0.00 35.18 3.86
2707 6485 4.086457 GACCCAAGGAATGTATGGTTTGT 58.914 43.478 0.00 0.00 32.13 2.83
3101 6879 0.249322 GCCCGACAGTACATACGCAT 60.249 55.000 0.00 0.00 0.00 4.73
3438 7219 5.013495 TGGTGAAGATCAAGAGGAAACAGAT 59.987 40.000 0.00 0.00 0.00 2.90
3443 7224 3.328931 AGCTGGTGAAGATCAAGAGGAAA 59.671 43.478 0.00 0.00 0.00 3.13
3529 7310 3.487120 AGGGGTTATAATGGAAGACGC 57.513 47.619 0.00 0.00 0.00 5.19
3540 7321 3.325716 GGCACGGAGAAATAGGGGTTATA 59.674 47.826 0.00 0.00 0.00 0.98
3961 7742 4.457603 CCGTTGGATCAATTGTTACCTTGA 59.542 41.667 5.13 1.05 35.95 3.02
4591 8373 4.525100 ACTTAAGCTTTCTCCTCTCGAAGT 59.475 41.667 3.20 0.80 0.00 3.01
4733 8516 8.174994 ACCAATGAATTGCCTATATATACCCT 57.825 34.615 0.00 0.00 36.48 4.34
4791 8574 1.971695 GAACCGGGACCAAAGGCTG 60.972 63.158 6.32 0.00 0.00 4.85
4992 8775 0.183492 GCATCAGCCCATTAGTCCCA 59.817 55.000 0.00 0.00 33.58 4.37
5043 8826 7.147976 GCTCGGCAAATAAGATAATTCCAATT 58.852 34.615 0.00 0.00 0.00 2.32
5044 8827 6.568462 CGCTCGGCAAATAAGATAATTCCAAT 60.568 38.462 0.00 0.00 0.00 3.16
5045 8828 5.277779 CGCTCGGCAAATAAGATAATTCCAA 60.278 40.000 0.00 0.00 0.00 3.53
5046 8829 4.213270 CGCTCGGCAAATAAGATAATTCCA 59.787 41.667 0.00 0.00 0.00 3.53
5068 8851 1.302671 TTACCGAGTTTTGGGGGCG 60.303 57.895 0.00 0.00 0.00 6.13
5070 8853 0.963856 GCCTTACCGAGTTTTGGGGG 60.964 60.000 0.00 0.00 0.00 5.40
5163 8957 8.547967 ACACATAACAGTAACTGAATAACTGG 57.452 34.615 0.00 0.00 43.91 4.00
5360 9166 5.278364 GCCGCTATATTGTACAGTAGTGTCT 60.278 44.000 6.44 0.00 38.19 3.41
5370 9176 5.060662 TCATCAGAGCCGCTATATTGTAC 57.939 43.478 0.00 0.00 0.00 2.90
5564 9371 6.255887 CCGCAAAAGGCATATACTATACTAGC 59.744 42.308 0.00 0.00 45.17 3.42
5565 9372 7.544622 TCCGCAAAAGGCATATACTATACTAG 58.455 38.462 0.00 0.00 45.17 2.57
5568 9375 7.980099 ACTATCCGCAAAAGGCATATACTATAC 59.020 37.037 0.00 0.00 45.17 1.47
5569 9376 7.979537 CACTATCCGCAAAAGGCATATACTATA 59.020 37.037 0.00 0.00 45.17 1.31
5570 9377 6.818644 CACTATCCGCAAAAGGCATATACTAT 59.181 38.462 0.00 0.00 45.17 2.12
5571 9378 6.163476 CACTATCCGCAAAAGGCATATACTA 58.837 40.000 0.00 0.00 45.17 1.82
5572 9379 4.997395 CACTATCCGCAAAAGGCATATACT 59.003 41.667 0.00 0.00 45.17 2.12
5573 9380 4.755123 ACACTATCCGCAAAAGGCATATAC 59.245 41.667 0.00 0.00 45.17 1.47
5574 9381 4.968259 ACACTATCCGCAAAAGGCATATA 58.032 39.130 0.00 0.00 45.17 0.86
5575 9382 3.815401 GACACTATCCGCAAAAGGCATAT 59.185 43.478 0.00 0.00 45.17 1.78
5613 9451 6.986817 CAGGGAATAATCAGTCAAGTAACGAT 59.013 38.462 0.00 0.00 0.00 3.73
5804 9649 3.869272 CGCATCCAGCCGCTTCAC 61.869 66.667 0.00 0.00 41.38 3.18
6065 11297 4.487948 CGTTTTCCTGTCGGTGTATAAGA 58.512 43.478 0.00 0.00 0.00 2.10
6148 11383 6.415206 AGTCAGGTAAAGCTTGTTACTGTA 57.585 37.500 0.00 0.00 34.88 2.74
6149 11384 5.291905 AGTCAGGTAAAGCTTGTTACTGT 57.708 39.130 0.00 0.00 34.88 3.55
6150 11385 5.869888 CCTAGTCAGGTAAAGCTTGTTACTG 59.130 44.000 0.00 7.03 37.15 2.74
6151 11386 6.038997 CCTAGTCAGGTAAAGCTTGTTACT 57.961 41.667 0.00 1.24 37.15 2.24
6270 13582 6.655848 CCAATTTGGTGATCAAAATTGGATGT 59.344 34.615 35.74 10.81 46.93 3.06
6278 13590 5.011840 TGCTGATCCAATTTGGTGATCAAAA 59.988 36.000 14.98 0.00 46.93 2.44
6332 13644 3.950395 CTCCTCAATCCTGATTTTGGACC 59.050 47.826 6.54 0.00 36.30 4.46
6379 13691 2.567169 TGGGGTGTCAGAGTCTAATGTG 59.433 50.000 0.00 0.00 0.00 3.21
6384 13696 1.272536 GGTCTGGGGTGTCAGAGTCTA 60.273 57.143 0.00 0.00 43.54 2.59
6420 13732 2.568090 CAATTGTGTGGGCTCCGC 59.432 61.111 0.00 0.00 34.12 5.54
6429 13741 5.477984 AGAATACCAGATTGTGCAATTGTGT 59.522 36.000 7.40 0.57 0.00 3.72
6450 13762 2.362375 GGCGGGCATGGGAAAGAA 60.362 61.111 0.00 0.00 0.00 2.52
6485 13797 0.879400 CATGCTAGAAGAGGCGGCAG 60.879 60.000 13.08 0.00 36.35 4.85
6486 13798 1.144716 CATGCTAGAAGAGGCGGCA 59.855 57.895 13.08 0.00 37.32 5.69
6512 13834 0.611618 ATCATGGCGGCAAACTGGAA 60.612 50.000 18.31 0.00 0.00 3.53
6577 13899 3.025262 ACCCTCCTTCATAGTCTTCGTC 58.975 50.000 0.00 0.00 0.00 4.20
6641 13963 1.197949 GCTTTCGGCACCTTCTTCTTC 59.802 52.381 0.00 0.00 41.35 2.87
6655 13977 0.321122 AGGAGCTCCAACTGCTTTCG 60.321 55.000 33.90 0.00 41.30 3.46
6783 14109 2.442643 CATGGTGGATGGTGGCCC 60.443 66.667 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.