Multiple sequence alignment - TraesCS7A01G143200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G143200 chr7A 100.000 4887 0 0 1 4887 94405313 94400427 0.000000e+00 9025.0
1 TraesCS7A01G143200 chr7A 99.042 626 6 0 1 626 94410063 94409438 0.000000e+00 1123.0
2 TraesCS7A01G143200 chr7A 98.560 625 9 0 2 626 94420549 94419925 0.000000e+00 1105.0
3 TraesCS7A01G143200 chr7A 98.860 351 4 0 276 626 94416112 94415762 1.150000e-175 627.0
4 TraesCS7A01G143200 chr7A 92.128 343 15 2 1 335 473962661 473962999 1.590000e-129 473.0
5 TraesCS7A01G143200 chr7A 91.870 246 18 2 4584 4829 94384833 94384590 4.680000e-90 342.0
6 TraesCS7A01G143200 chr7D 90.533 2007 122 31 2860 4832 92240195 92238223 0.000000e+00 2591.0
7 TraesCS7A01G143200 chr7D 96.432 1205 40 2 1657 2861 92241452 92240251 0.000000e+00 1984.0
8 TraesCS7A01G143200 chr7D 87.489 1167 84 31 627 1768 92243154 92242025 0.000000e+00 1290.0
9 TraesCS7A01G143200 chr7D 81.879 447 39 24 4473 4887 92235636 92235200 6.060000e-89 339.0
10 TraesCS7A01G143200 chr7D 89.404 151 8 1 4687 4829 92230561 92230411 3.000000e-42 183.0
11 TraesCS7A01G143200 chr7B 89.152 1945 144 36 2915 4829 44295696 44293789 0.000000e+00 2361.0
12 TraesCS7A01G143200 chr7B 94.321 1215 54 5 1658 2861 44297140 44295930 0.000000e+00 1847.0
13 TraesCS7A01G143200 chr7B 87.845 1160 79 31 627 1759 44298814 44297690 0.000000e+00 1304.0
14 TraesCS7A01G143200 chr7B 91.870 246 18 2 4584 4829 44259087 44258844 4.680000e-90 342.0
15 TraesCS7A01G143200 chr4B 90.079 635 33 13 3 629 336837225 336836613 0.000000e+00 797.0
16 TraesCS7A01G143200 chr4B 85.127 632 52 20 2 626 496324904 496325500 4.180000e-170 608.0
17 TraesCS7A01G143200 chr5B 90.032 632 36 6 3 627 612575699 612575088 0.000000e+00 793.0
18 TraesCS7A01G143200 chr5B 84.408 667 42 29 1 625 676613979 676613333 2.520000e-167 599.0
19 TraesCS7A01G143200 chr1A 85.395 582 57 14 1173 1731 508552007 508551431 3.280000e-161 579.0
20 TraesCS7A01G143200 chr1A 93.939 66 4 0 1583 1648 53268209 53268144 3.110000e-17 100.0
21 TraesCS7A01G143200 chr1A 93.939 66 4 0 1583 1648 70910071 70910136 3.110000e-17 100.0
22 TraesCS7A01G143200 chr1A 93.939 66 4 0 1583 1648 122157610 122157675 3.110000e-17 100.0
23 TraesCS7A01G143200 chr1A 93.939 66 4 0 1583 1648 366804229 366804164 3.110000e-17 100.0
24 TraesCS7A01G143200 chr1A 93.939 66 4 0 1583 1648 454585484 454585549 3.110000e-17 100.0
25 TraesCS7A01G143200 chr1A 91.228 57 5 0 1657 1713 508550825 508550769 1.460000e-10 78.7
26 TraesCS7A01G143200 chr5A 84.176 613 70 14 1170 1759 25004612 25005220 1.970000e-158 569.0
27 TraesCS7A01G143200 chr5A 89.474 57 6 0 1657 1713 25005809 25005865 6.790000e-09 73.1
28 TraesCS7A01G143200 chr3A 92.711 343 13 2 1 335 336873265 336872927 7.350000e-133 484.0
29 TraesCS7A01G143200 chr3A 83.824 476 54 14 1173 1629 688271575 688271104 9.720000e-117 431.0
30 TraesCS7A01G143200 chr3A 89.213 343 18 5 1 335 129519810 129519479 1.270000e-110 411.0
31 TraesCS7A01G143200 chr3A 94.488 254 10 1 374 627 129519478 129519229 5.930000e-104 388.0
32 TraesCS7A01G143200 chr2A 87.861 346 17 8 2 332 120407993 120408328 2.760000e-102 383.0
33 TraesCS7A01G143200 chr2A 91.732 254 17 1 374 627 120408332 120408581 2.800000e-92 350.0
34 TraesCS7A01G143200 chr5D 88.924 316 23 4 1 312 477053096 477052789 3.570000e-101 379.0
35 TraesCS7A01G143200 chr6B 81.818 231 37 5 2627 2854 674102866 674103094 6.460000e-44 189.0
36 TraesCS7A01G143200 chr6A 93.939 66 4 0 1583 1648 19080325 19080260 3.110000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G143200 chr7A 94400427 94405313 4886 True 9025.000000 9025 100.000000 1 4887 1 chr7A.!!$R2 4886
1 TraesCS7A01G143200 chr7A 94409438 94410063 625 True 1123.000000 1123 99.042000 1 626 1 chr7A.!!$R3 625
2 TraesCS7A01G143200 chr7A 94415762 94420549 4787 True 866.000000 1105 98.710000 2 626 2 chr7A.!!$R4 624
3 TraesCS7A01G143200 chr7D 92235200 92243154 7954 True 1551.000000 2591 89.083250 627 4887 4 chr7D.!!$R2 4260
4 TraesCS7A01G143200 chr7B 44293789 44298814 5025 True 1837.333333 2361 90.439333 627 4829 3 chr7B.!!$R2 4202
5 TraesCS7A01G143200 chr4B 336836613 336837225 612 True 797.000000 797 90.079000 3 629 1 chr4B.!!$R1 626
6 TraesCS7A01G143200 chr4B 496324904 496325500 596 False 608.000000 608 85.127000 2 626 1 chr4B.!!$F1 624
7 TraesCS7A01G143200 chr5B 612575088 612575699 611 True 793.000000 793 90.032000 3 627 1 chr5B.!!$R1 624
8 TraesCS7A01G143200 chr5B 676613333 676613979 646 True 599.000000 599 84.408000 1 625 1 chr5B.!!$R2 624
9 TraesCS7A01G143200 chr1A 508550769 508552007 1238 True 328.850000 579 88.311500 1173 1731 2 chr1A.!!$R3 558
10 TraesCS7A01G143200 chr5A 25004612 25005865 1253 False 321.050000 569 86.825000 1170 1759 2 chr5A.!!$F1 589
11 TraesCS7A01G143200 chr3A 129519229 129519810 581 True 399.500000 411 91.850500 1 627 2 chr3A.!!$R3 626
12 TraesCS7A01G143200 chr2A 120407993 120408581 588 False 366.500000 383 89.796500 2 627 2 chr2A.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 4881 0.550914 TTTTGCACAGGGTGACTCCT 59.449 50.0 0.00 0.00 35.23 3.69 F
1194 5450 0.033781 TCGTCGTGTTCGGGGAATTT 59.966 50.0 0.00 0.00 37.69 1.82 F
1549 5832 0.109723 TTTACTGCCACAGGGTGTCC 59.890 55.0 0.00 0.00 35.51 4.02 F
1700 6000 0.665298 GCCCTAATGCTGTGCTAAGC 59.335 55.0 4.45 4.45 43.82 3.09 F
3206 8417 0.793861 TTGCGCAACGTTAGACCATC 59.206 50.0 21.02 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 6797 0.604578 ATGAAGCGCCACTTTGCATT 59.395 45.000 2.29 0.0 39.29 3.56 R
3189 8400 1.076332 AAGATGGTCTAACGTTGCGC 58.924 50.000 11.99 0.0 0.00 6.09 R
3212 8423 4.018415 AGCAAAAGCTTAACATAGAGGGGA 60.018 41.667 0.00 0.0 0.00 4.81 R
3213 8424 4.096984 CAGCAAAAGCTTAACATAGAGGGG 59.903 45.833 0.00 0.0 0.00 4.79 R
4225 9440 0.099968 GACCATCGATTCGACCGACA 59.900 55.000 11.56 0.0 39.18 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
407 4658 2.475371 GATGGGCCTGTGCTGTGAGT 62.475 60.000 4.53 0.00 37.74 3.41
442 4693 9.676861 ATTGACTGATTCTGTGAAATCTATTGA 57.323 29.630 0.43 0.00 36.73 2.57
577 4828 2.034812 CCGGAATTTTGGTTCGGTTTGA 59.965 45.455 0.00 0.00 0.00 2.69
629 4880 0.668535 GTTTTGCACAGGGTGACTCC 59.331 55.000 0.00 0.00 35.23 3.85
630 4881 0.550914 TTTTGCACAGGGTGACTCCT 59.449 50.000 0.00 0.00 35.23 3.69
634 4885 2.122954 ACAGGGTGACTCCTCCCC 59.877 66.667 0.00 0.00 45.15 4.81
638 4889 2.203938 GGTGACTCCTCCCCCACA 60.204 66.667 0.00 0.00 0.00 4.17
644 4895 1.687493 CTCCTCCCCCACACTCTCC 60.687 68.421 0.00 0.00 0.00 3.71
672 4927 2.024414 GCTCTCTTCTCCACTCTCTCC 58.976 57.143 0.00 0.00 0.00 3.71
674 4929 1.996291 TCTCTTCTCCACTCTCTCCCA 59.004 52.381 0.00 0.00 0.00 4.37
712 4967 1.896220 AAAAATCGAGCTCCAGCACA 58.104 45.000 8.47 0.00 45.16 4.57
713 4968 1.160137 AAAATCGAGCTCCAGCACAC 58.840 50.000 8.47 0.00 45.16 3.82
717 4972 2.320587 CGAGCTCCAGCACACAACC 61.321 63.158 8.47 0.00 45.16 3.77
727 4982 2.124487 ACACAACCACCACCACCG 60.124 61.111 0.00 0.00 0.00 4.94
738 4993 1.576421 CACCACCGCAAGCTTCTTC 59.424 57.895 0.00 0.00 0.00 2.87
739 4994 1.600916 ACCACCGCAAGCTTCTTCC 60.601 57.895 0.00 0.00 0.00 3.46
819 5074 2.816777 AGCATCTCCTTTCTTTCCCC 57.183 50.000 0.00 0.00 0.00 4.81
903 5158 2.224450 CCGCCCGTATTATTCTTCCCTT 60.224 50.000 0.00 0.00 0.00 3.95
904 5159 3.064931 CGCCCGTATTATTCTTCCCTTC 58.935 50.000 0.00 0.00 0.00 3.46
905 5160 3.409570 GCCCGTATTATTCTTCCCTTCC 58.590 50.000 0.00 0.00 0.00 3.46
906 5161 3.809678 GCCCGTATTATTCTTCCCTTCCC 60.810 52.174 0.00 0.00 0.00 3.97
986 5241 0.660300 GTTCTGCCAAGAAAACGCCG 60.660 55.000 0.00 0.00 44.01 6.46
988 5243 2.203224 TGCCAAGAAAACGCCGGA 60.203 55.556 5.05 0.00 0.00 5.14
989 5244 2.187599 CTGCCAAGAAAACGCCGGAG 62.188 60.000 5.05 3.72 0.00 4.63
1165 5420 2.804933 GCGCTTCTTTGCTAGCCTAGAT 60.805 50.000 13.29 0.00 33.86 1.98
1166 5421 3.553096 GCGCTTCTTTGCTAGCCTAGATA 60.553 47.826 13.29 5.38 33.86 1.98
1167 5422 4.233789 CGCTTCTTTGCTAGCCTAGATAG 58.766 47.826 13.29 13.93 33.86 2.08
1168 5423 4.022762 CGCTTCTTTGCTAGCCTAGATAGA 60.023 45.833 13.29 0.48 33.86 1.98
1194 5450 0.033781 TCGTCGTGTTCGGGGAATTT 59.966 50.000 0.00 0.00 37.69 1.82
1331 5587 6.086871 CGTTTCTTAAAATCTGGAGGAAAGC 58.913 40.000 0.00 0.00 0.00 3.51
1332 5588 5.880054 TTCTTAAAATCTGGAGGAAAGCG 57.120 39.130 0.00 0.00 0.00 4.68
1333 5589 5.160607 TCTTAAAATCTGGAGGAAAGCGA 57.839 39.130 0.00 0.00 0.00 4.93
1334 5590 5.178797 TCTTAAAATCTGGAGGAAAGCGAG 58.821 41.667 0.00 0.00 0.00 5.03
1335 5591 3.703001 AAAATCTGGAGGAAAGCGAGA 57.297 42.857 0.00 0.00 0.00 4.04
1336 5592 2.977772 AATCTGGAGGAAAGCGAGAG 57.022 50.000 0.00 0.00 0.00 3.20
1337 5593 2.151502 ATCTGGAGGAAAGCGAGAGA 57.848 50.000 0.00 0.00 0.00 3.10
1338 5594 2.151502 TCTGGAGGAAAGCGAGAGAT 57.848 50.000 0.00 0.00 0.00 2.75
1339 5595 2.461695 TCTGGAGGAAAGCGAGAGATT 58.538 47.619 0.00 0.00 44.60 2.40
1371 5627 2.808543 GCTCCTTGAATCGTTCAACAGT 59.191 45.455 8.47 0.00 44.21 3.55
1373 5629 4.451096 GCTCCTTGAATCGTTCAACAGTAA 59.549 41.667 8.47 0.00 44.21 2.24
1393 5672 5.659079 AGTAAGGTAGGAGATTTCTGGTGAG 59.341 44.000 0.00 0.00 0.00 3.51
1395 5674 4.285863 AGGTAGGAGATTTCTGGTGAGAG 58.714 47.826 0.00 0.00 0.00 3.20
1396 5675 4.017037 AGGTAGGAGATTTCTGGTGAGAGA 60.017 45.833 0.00 0.00 0.00 3.10
1407 5686 2.301296 CTGGTGAGAGATGACAGGTTGT 59.699 50.000 0.00 0.00 0.00 3.32
1425 5704 2.644676 TGTTTGTTTGTCCGTCCATCA 58.355 42.857 0.00 0.00 0.00 3.07
1433 5712 3.417069 TGTCCGTCCATCACATTTCTT 57.583 42.857 0.00 0.00 0.00 2.52
1450 5729 6.818644 ACATTTCTTCGTCGGTAGTACTAGTA 59.181 38.462 1.87 0.00 0.00 1.82
1549 5832 0.109723 TTTACTGCCACAGGGTGTCC 59.890 55.000 0.00 0.00 35.51 4.02
1580 5867 9.310716 GGTACTAATTTCAGACCATTGTAGTAC 57.689 37.037 8.47 8.47 40.57 2.73
1581 5868 9.310716 GTACTAATTTCAGACCATTGTAGTACC 57.689 37.037 0.00 0.00 37.63 3.34
1602 5895 3.941483 CCAGTACCTAGCAAACAGGAATG 59.059 47.826 0.00 0.00 36.61 2.67
1609 5902 5.882557 ACCTAGCAAACAGGAATGATTAGTG 59.117 40.000 0.00 0.00 36.61 2.74
1650 5950 5.453567 ACTTGGTACCTGCAAGATTTTTC 57.546 39.130 14.36 0.00 34.07 2.29
1700 6000 0.665298 GCCCTAATGCTGTGCTAAGC 59.335 55.000 4.45 4.45 43.82 3.09
1701 6001 1.312815 CCCTAATGCTGTGCTAAGCC 58.687 55.000 8.46 0.00 42.83 4.35
1734 6730 5.063180 TGTTCTTGCAATGATCCATGTTC 57.937 39.130 0.00 0.00 0.00 3.18
1769 6765 2.620251 GTGCCTGCACCATATCAGTA 57.380 50.000 11.16 0.00 40.79 2.74
1787 6783 9.920133 ATATCAGTATTGCTTACTACTGTCATG 57.080 33.333 8.96 0.00 43.39 3.07
1789 6785 5.755375 CAGTATTGCTTACTACTGTCATGGG 59.245 44.000 0.00 0.00 39.19 4.00
1792 6788 5.748670 TTGCTTACTACTGTCATGGGTTA 57.251 39.130 0.00 0.00 0.00 2.85
1793 6789 5.080969 TGCTTACTACTGTCATGGGTTAC 57.919 43.478 0.00 0.00 0.00 2.50
1826 6822 2.982470 CAAAGTGGCGCTTCATCTTTTC 59.018 45.455 14.55 0.00 36.17 2.29
1844 6840 7.458409 TCTTTTCCATCAGAATTCTTTCCTG 57.542 36.000 4.86 1.16 33.44 3.86
1886 6882 4.373348 AGAGTGCGCCTACTTTACTTAG 57.627 45.455 4.18 0.00 0.00 2.18
2141 7137 4.584638 TGGGGTATGTACATGCTTTCTT 57.415 40.909 21.19 0.00 0.00 2.52
2222 7227 6.214399 ACTACAATTATAGCTAGACCGCAAC 58.786 40.000 0.00 0.00 0.00 4.17
2238 7243 2.293122 CGCAACTTCCCACATGAAAAGA 59.707 45.455 0.00 0.00 0.00 2.52
2382 7387 5.366477 TCCACAGTCAATCCTATGCTTGATA 59.634 40.000 0.00 0.00 34.18 2.15
2383 7388 6.057533 CCACAGTCAATCCTATGCTTGATAA 58.942 40.000 0.00 0.00 34.18 1.75
2420 7426 3.117625 ACATTCTGTCATGCCATCATCCT 60.118 43.478 0.00 0.00 0.00 3.24
2429 7435 7.744733 TGTCATGCCATCATCCTATAAAGTTA 58.255 34.615 0.00 0.00 0.00 2.24
2464 7470 3.659786 TGTACAGAATGCAGTACACACC 58.340 45.455 11.45 0.00 43.92 4.16
2485 7491 4.202326 ACCGTGGTTCTCTGAGTGTAATTT 60.202 41.667 4.32 0.00 0.00 1.82
2775 7782 3.691118 TGCAGATTGATAGTCAGTTTGCC 59.309 43.478 12.91 0.61 41.39 4.52
2847 7854 6.418057 ACAGCAATGATTTTTGGAAGGTAA 57.582 33.333 0.00 0.00 0.00 2.85
2868 7932 8.850156 AGGTAATTTTCTGGCACATATAACATC 58.150 33.333 0.00 0.00 38.20 3.06
2880 7944 7.201679 GGCACATATAACATCTATGATTGAGCC 60.202 40.741 0.00 0.00 32.17 4.70
2881 7945 7.335171 GCACATATAACATCTATGATTGAGCCA 59.665 37.037 0.00 0.00 32.17 4.75
2897 7961 7.395772 TGATTGAGCCAGTCATTAAAACCATAA 59.604 33.333 0.00 0.00 34.17 1.90
2899 7963 5.125417 TGAGCCAGTCATTAAAACCATAAGC 59.875 40.000 0.00 0.00 0.00 3.09
2901 7965 5.126061 AGCCAGTCATTAAAACCATAAGCTG 59.874 40.000 0.00 0.00 0.00 4.24
2911 8100 8.568676 TTAAAACCATAAGCTGCAATACACTA 57.431 30.769 1.02 0.00 0.00 2.74
2912 8101 7.645058 AAAACCATAAGCTGCAATACACTAT 57.355 32.000 1.02 0.00 0.00 2.12
2913 8102 8.746052 AAAACCATAAGCTGCAATACACTATA 57.254 30.769 1.02 0.00 0.00 1.31
2943 8132 9.265901 GCTTAGAAAGTCTCATTATTCAGCATA 57.734 33.333 0.00 0.00 0.00 3.14
3008 8197 7.243487 ACATACAATGAAAGTGCATCGTAAAG 58.757 34.615 0.00 0.00 33.50 1.85
3011 8200 5.008613 ACAATGAAAGTGCATCGTAAAGTGT 59.991 36.000 0.00 0.00 33.50 3.55
3015 8204 4.928661 AAGTGCATCGTAAAGTGTCATC 57.071 40.909 0.00 0.00 0.00 2.92
3016 8205 3.925379 AGTGCATCGTAAAGTGTCATCA 58.075 40.909 0.00 0.00 0.00 3.07
3017 8206 4.507710 AGTGCATCGTAAAGTGTCATCAT 58.492 39.130 0.00 0.00 0.00 2.45
3018 8207 4.330894 AGTGCATCGTAAAGTGTCATCATG 59.669 41.667 0.00 0.00 0.00 3.07
3019 8208 4.329801 GTGCATCGTAAAGTGTCATCATGA 59.670 41.667 0.00 0.00 0.00 3.07
3020 8209 5.007039 GTGCATCGTAAAGTGTCATCATGAT 59.993 40.000 1.18 1.18 0.00 2.45
3021 8210 6.200854 GTGCATCGTAAAGTGTCATCATGATA 59.799 38.462 8.15 0.00 0.00 2.15
3022 8211 6.930722 TGCATCGTAAAGTGTCATCATGATAT 59.069 34.615 8.15 0.00 0.00 1.63
3024 8213 7.743400 GCATCGTAAAGTGTCATCATGATATTG 59.257 37.037 8.15 0.00 0.00 1.90
3034 8224 9.630098 GTGTCATCATGATATTGTTGAAGTTTT 57.370 29.630 8.15 0.00 29.62 2.43
3117 8315 9.896645 AACTAGAGAGATTCTGCATATTTCAAA 57.103 29.630 0.00 0.00 36.61 2.69
3124 8322 9.448294 GAGATTCTGCATATTTCAAATCTTCAC 57.552 33.333 0.00 0.00 34.52 3.18
3138 8336 4.736611 ATCTTCACCCCAAGCATATGAT 57.263 40.909 6.97 0.00 0.00 2.45
3141 8339 4.889409 TCTTCACCCCAAGCATATGATTTC 59.111 41.667 6.97 0.00 0.00 2.17
3145 8343 6.613699 TCACCCCAAGCATATGATTTCTATT 58.386 36.000 6.97 0.00 0.00 1.73
3146 8344 7.068702 TCACCCCAAGCATATGATTTCTATTT 58.931 34.615 6.97 0.00 0.00 1.40
3202 8413 2.875080 AGATTTGCGCAACGTTAGAC 57.125 45.000 24.99 9.01 0.00 2.59
3203 8414 1.463444 AGATTTGCGCAACGTTAGACC 59.537 47.619 24.99 0.00 0.00 3.85
3204 8415 1.195900 GATTTGCGCAACGTTAGACCA 59.804 47.619 24.99 4.87 0.00 4.02
3205 8416 1.231221 TTTGCGCAACGTTAGACCAT 58.769 45.000 24.99 0.00 0.00 3.55
3206 8417 0.793861 TTGCGCAACGTTAGACCATC 59.206 50.000 21.02 0.00 0.00 3.51
3208 8419 1.076332 GCGCAACGTTAGACCATCTT 58.924 50.000 0.30 0.00 0.00 2.40
3209 8420 1.463444 GCGCAACGTTAGACCATCTTT 59.537 47.619 0.30 0.00 0.00 2.52
3279 8490 6.509418 TTTACAGCATTAGTTGACATTCCC 57.491 37.500 0.00 0.00 0.00 3.97
3281 8492 4.406456 ACAGCATTAGTTGACATTCCCAA 58.594 39.130 0.00 0.00 0.00 4.12
3283 8494 6.186957 ACAGCATTAGTTGACATTCCCAATA 58.813 36.000 0.00 0.00 0.00 1.90
3293 8504 7.122650 AGTTGACATTCCCAATAACCAATACTG 59.877 37.037 0.00 0.00 0.00 2.74
3820 9031 0.969149 TCAGAGTGAATCAGCCACGT 59.031 50.000 0.00 0.00 39.38 4.49
3901 9112 2.214181 AATGACGGCGCTCTTCTCGT 62.214 55.000 6.90 7.17 38.62 4.18
3911 9122 4.717629 CTTCTCGTGCCGCCGTGA 62.718 66.667 1.97 2.54 0.00 4.35
3914 9125 4.794439 CTCGTGCCGCCGTGATCA 62.794 66.667 0.00 0.00 0.00 2.92
3920 9131 4.457496 CCGCCGTGATCAGGTGCT 62.457 66.667 19.56 0.00 37.91 4.40
3962 9174 5.686397 GCTCTAATTGTATGTAGTCGTGTCC 59.314 44.000 0.00 0.00 0.00 4.02
3970 9182 1.063951 GTAGTCGTGTCCGTGCTTCG 61.064 60.000 0.00 0.00 39.52 3.79
3971 9183 1.509644 TAGTCGTGTCCGTGCTTCGT 61.510 55.000 1.89 0.00 37.94 3.85
3972 9184 1.947642 GTCGTGTCCGTGCTTCGTT 60.948 57.895 1.89 0.00 37.94 3.85
3973 9185 1.947146 TCGTGTCCGTGCTTCGTTG 60.947 57.895 1.89 0.00 37.94 4.10
3974 9186 2.235016 CGTGTCCGTGCTTCGTTGT 61.235 57.895 1.89 0.00 37.94 3.32
3977 9189 0.460459 TGTCCGTGCTTCGTTGTTGA 60.460 50.000 1.89 0.00 37.94 3.18
3990 9202 2.973224 CGTTGTTGATGTTGTTAGCTGC 59.027 45.455 0.00 0.00 0.00 5.25
4124 9339 1.376553 GTCCTGGTGAAGAGGCTGC 60.377 63.158 0.00 0.00 0.00 5.25
4137 9352 4.695231 GCTGCGTGCCTTGCTGTG 62.695 66.667 0.00 0.00 35.15 3.66
4225 9440 0.537188 AACTCCATCGCCGTGAATCT 59.463 50.000 0.00 0.00 0.00 2.40
4226 9441 0.179100 ACTCCATCGCCGTGAATCTG 60.179 55.000 0.00 0.00 0.00 2.90
4227 9442 0.179100 CTCCATCGCCGTGAATCTGT 60.179 55.000 0.00 0.00 0.00 3.41
4228 9443 0.179111 TCCATCGCCGTGAATCTGTC 60.179 55.000 0.00 0.00 0.00 3.51
4229 9444 1.482621 CCATCGCCGTGAATCTGTCG 61.483 60.000 0.00 0.00 0.00 4.35
4288 9503 5.703978 TGAATTGTCAATTACCAGGTGTG 57.296 39.130 10.80 0.00 0.00 3.82
4291 9506 5.964958 ATTGTCAATTACCAGGTGTGAAG 57.035 39.130 0.76 0.00 0.00 3.02
4299 9514 5.755409 TTACCAGGTGTGAAGACATACAT 57.245 39.130 0.76 0.00 39.36 2.29
4333 9550 1.534595 GAGCTGAACACAAAGGAGCAG 59.465 52.381 0.00 0.00 31.80 4.24
4355 9572 8.327271 AGCAGAATATTGCCTGATAAGTGATAT 58.673 33.333 8.05 0.00 45.18 1.63
4367 9584 3.784511 AAGTGATATGGGCATGGAGAG 57.215 47.619 0.00 0.00 0.00 3.20
4376 9593 0.465824 GGCATGGAGAGCAGAGCAAT 60.466 55.000 0.00 0.00 0.00 3.56
4420 9638 0.034059 ACCAGTCCAACTTCTCTGCG 59.966 55.000 0.00 0.00 0.00 5.18
4486 9704 1.797348 GCATGCAATTAAACGACCCCG 60.797 52.381 14.21 0.00 42.50 5.73
4520 9738 1.463674 CGGACAATTTTCTGGAGGGG 58.536 55.000 0.00 0.00 0.00 4.79
4521 9739 1.004277 CGGACAATTTTCTGGAGGGGA 59.996 52.381 0.00 0.00 0.00 4.81
4636 9857 6.131264 TGACAGCATTCTTAATCCCATCATT 58.869 36.000 0.00 0.00 0.00 2.57
4637 9858 6.040054 TGACAGCATTCTTAATCCCATCATTG 59.960 38.462 0.00 0.00 0.00 2.82
4685 9906 1.929169 GTCCGGCGTCCTAATAAACAC 59.071 52.381 6.01 0.00 0.00 3.32
4763 9985 4.535781 ACAATGGCTACATTCCTGCATTA 58.464 39.130 0.00 0.00 45.24 1.90
4802 10024 1.878522 GGCCGCAGACATGAGTACG 60.879 63.158 0.00 0.00 0.00 3.67
4839 10087 1.692173 CCGGGCCGGGGTATATATGG 61.692 65.000 37.27 6.54 44.15 2.74
4866 10114 3.755378 CAGGGTCAAATGGTTCTTCAGAG 59.245 47.826 0.00 0.00 0.00 3.35
4867 10115 3.395941 AGGGTCAAATGGTTCTTCAGAGT 59.604 43.478 0.00 0.00 0.00 3.24
4868 10116 4.141158 AGGGTCAAATGGTTCTTCAGAGTT 60.141 41.667 0.00 0.00 0.00 3.01
4869 10117 4.216472 GGGTCAAATGGTTCTTCAGAGTTC 59.784 45.833 0.00 0.00 0.00 3.01
4870 10118 4.821805 GGTCAAATGGTTCTTCAGAGTTCA 59.178 41.667 0.00 0.00 0.00 3.18
4871 10119 5.049129 GGTCAAATGGTTCTTCAGAGTTCAG 60.049 44.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
407 4658 3.754850 CAGAATCAGTCAATCACAGGCAA 59.245 43.478 0.00 0.00 0.00 4.52
629 4880 2.689034 GGGGAGAGTGTGGGGGAG 60.689 72.222 0.00 0.00 0.00 4.30
630 4881 4.348495 GGGGGAGAGTGTGGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
657 4908 2.099405 GAGTGGGAGAGAGTGGAGAAG 58.901 57.143 0.00 0.00 0.00 2.85
672 4927 0.399091 TATGGGGGCAGAGAGAGTGG 60.399 60.000 0.00 0.00 0.00 4.00
674 4929 2.270434 TTTATGGGGGCAGAGAGAGT 57.730 50.000 0.00 0.00 0.00 3.24
711 4966 3.591835 GCGGTGGTGGTGGTTGTG 61.592 66.667 0.00 0.00 0.00 3.33
712 4967 3.646942 TTGCGGTGGTGGTGGTTGT 62.647 57.895 0.00 0.00 0.00 3.32
713 4968 2.830827 TTGCGGTGGTGGTGGTTG 60.831 61.111 0.00 0.00 0.00 3.77
717 4972 2.906897 AAGCTTGCGGTGGTGGTG 60.907 61.111 0.00 0.00 0.00 4.17
739 4994 1.857348 AGGAAGGGAAAGGTGGGGG 60.857 63.158 0.00 0.00 0.00 5.40
819 5074 2.046864 TCCGAGGAGGAGAGCAACG 61.047 63.158 0.00 0.00 45.98 4.10
857 5112 0.555769 AGCAGAGTAGGAGGGAGGAG 59.444 60.000 0.00 0.00 0.00 3.69
858 5113 0.553819 GAGCAGAGTAGGAGGGAGGA 59.446 60.000 0.00 0.00 0.00 3.71
860 5115 0.555769 AGGAGCAGAGTAGGAGGGAG 59.444 60.000 0.00 0.00 0.00 4.30
861 5116 1.495574 GTAGGAGCAGAGTAGGAGGGA 59.504 57.143 0.00 0.00 0.00 4.20
903 5158 2.917713 AAAGCAGAGAGAGAGAGGGA 57.082 50.000 0.00 0.00 0.00 4.20
904 5159 2.168313 GGAAAAGCAGAGAGAGAGAGGG 59.832 54.545 0.00 0.00 0.00 4.30
905 5160 2.168313 GGGAAAAGCAGAGAGAGAGAGG 59.832 54.545 0.00 0.00 0.00 3.69
906 5161 3.099141 AGGGAAAAGCAGAGAGAGAGAG 58.901 50.000 0.00 0.00 0.00 3.20
1020 5275 1.817099 GTCTGCAGAATCGGGCCTG 60.817 63.158 20.19 4.71 0.00 4.85
1066 5321 2.063979 TACCCACATGAGGCGAGGG 61.064 63.158 3.22 5.29 45.20 4.30
1165 5420 3.242641 CCGAACACGACGAGATTCATCTA 60.243 47.826 0.00 0.00 37.25 1.98
1166 5421 2.478031 CCGAACACGACGAGATTCATCT 60.478 50.000 0.00 0.00 40.50 2.90
1167 5422 1.846782 CCGAACACGACGAGATTCATC 59.153 52.381 0.00 0.00 0.00 2.92
1168 5423 1.469251 CCCGAACACGACGAGATTCAT 60.469 52.381 0.00 0.00 0.00 2.57
1194 5450 0.615331 GCTCAGGACAGGAACCATCA 59.385 55.000 0.00 0.00 0.00 3.07
1299 5555 2.392933 TTTTAAGAAACGGCAGCACG 57.607 45.000 0.00 0.00 40.31 5.34
1305 5561 4.007659 TCCTCCAGATTTTAAGAAACGGC 58.992 43.478 0.00 0.00 0.00 5.68
1339 5595 2.746279 TCAAGGAGCACCCAGAAAAA 57.254 45.000 0.00 0.00 37.41 1.94
1340 5596 2.746279 TTCAAGGAGCACCCAGAAAA 57.254 45.000 0.00 0.00 37.41 2.29
1341 5597 2.795329 GATTCAAGGAGCACCCAGAAA 58.205 47.619 8.55 0.00 37.41 2.52
1342 5598 1.339055 CGATTCAAGGAGCACCCAGAA 60.339 52.381 7.23 7.23 37.41 3.02
1343 5599 0.250234 CGATTCAAGGAGCACCCAGA 59.750 55.000 0.00 0.00 37.41 3.86
1344 5600 0.036010 ACGATTCAAGGAGCACCCAG 60.036 55.000 0.00 0.00 37.41 4.45
1345 5601 0.400213 AACGATTCAAGGAGCACCCA 59.600 50.000 0.00 0.00 37.41 4.51
1346 5602 1.087501 GAACGATTCAAGGAGCACCC 58.912 55.000 0.00 0.00 36.73 4.61
1347 5603 1.808411 TGAACGATTCAAGGAGCACC 58.192 50.000 0.00 0.00 36.59 5.01
1371 5627 5.838955 TCTCACCAGAAATCTCCTACCTTA 58.161 41.667 0.00 0.00 0.00 2.69
1373 5629 4.017037 TCTCTCACCAGAAATCTCCTACCT 60.017 45.833 0.00 0.00 0.00 3.08
1393 5672 5.248870 ACAAACAAACAACCTGTCATCTC 57.751 39.130 0.00 0.00 0.00 2.75
1395 5674 4.359706 GGACAAACAAACAACCTGTCATC 58.640 43.478 3.23 0.00 38.50 2.92
1396 5675 3.181491 CGGACAAACAAACAACCTGTCAT 60.181 43.478 3.23 0.00 38.50 3.06
1407 5686 2.644676 TGTGATGGACGGACAAACAAA 58.355 42.857 0.00 0.00 0.00 2.83
1425 5704 5.645497 ACTAGTACTACCGACGAAGAAATGT 59.355 40.000 0.00 0.00 0.00 2.71
1450 5729 8.156165 ACAGTTAGTCAGTTACAGAGTAGTAGT 58.844 37.037 0.00 0.00 0.00 2.73
1517 5800 5.121811 GTGGCAGTAAATCTCATCATCAGT 58.878 41.667 0.00 0.00 0.00 3.41
1518 5801 5.121105 TGTGGCAGTAAATCTCATCATCAG 58.879 41.667 0.00 0.00 0.00 2.90
1549 5832 3.449737 TGGTCTGAAATTAGTACCTCCCG 59.550 47.826 0.00 0.00 0.00 5.14
1580 5867 3.695830 TTCCTGTTTGCTAGGTACTGG 57.304 47.619 0.00 0.00 41.52 4.00
1581 5868 4.832248 TCATTCCTGTTTGCTAGGTACTG 58.168 43.478 0.00 0.00 41.52 2.74
1602 5895 3.243301 CCAATGCACATGGAGCACTAATC 60.243 47.826 15.96 0.00 45.95 1.75
1650 5950 2.461695 TCACTTCAGCCTTAGAGAGGG 58.538 52.381 0.00 0.00 46.40 4.30
1700 6000 2.361757 TGCAAGAACAACATGTCCTTGG 59.638 45.455 21.21 10.69 0.00 3.61
1701 6001 3.713858 TGCAAGAACAACATGTCCTTG 57.286 42.857 18.15 18.15 0.00 3.61
1734 6730 2.756760 AGGCACTCCAAAGTATGCAATG 59.243 45.455 0.00 0.00 33.25 2.82
1769 6765 4.844349 ACCCATGACAGTAGTAAGCAAT 57.156 40.909 0.00 0.00 0.00 3.56
1789 6785 5.591099 CCACTTTGCATTATGATGGGTAAC 58.409 41.667 0.00 0.00 33.72 2.50
1792 6788 2.431782 GCCACTTTGCATTATGATGGGT 59.568 45.455 0.00 0.00 33.72 4.51
1793 6789 2.544277 CGCCACTTTGCATTATGATGGG 60.544 50.000 0.00 0.00 33.72 4.00
1801 6797 0.604578 ATGAAGCGCCACTTTGCATT 59.395 45.000 2.29 0.00 39.29 3.56
1826 6822 5.972107 ACAACAGGAAAGAATTCTGATGG 57.028 39.130 9.17 1.04 35.79 3.51
1844 6840 7.062839 CACTCTATAACTGAGAGCAGAAACAAC 59.937 40.741 0.00 0.00 45.17 3.32
2192 7188 7.537991 CGGTCTAGCTATAATTGTAGTAGTTGC 59.462 40.741 10.51 0.00 0.00 4.17
2251 7256 4.487714 TTGGGTACATGGATCAAGTCTC 57.512 45.455 0.00 0.00 0.00 3.36
2255 7260 7.303182 TCTACTATTGGGTACATGGATCAAG 57.697 40.000 0.00 0.00 0.00 3.02
2464 7470 5.924475 AAAATTACACTCAGAGAACCACG 57.076 39.130 3.79 0.00 0.00 4.94
2592 7599 9.623000 AGTGTAAAAACTTACTTACAGGAACAT 57.377 29.630 0.00 0.00 38.38 2.71
2614 7621 5.532664 AAGACCTAGAAAACGAGAAGTGT 57.467 39.130 0.00 0.00 0.00 3.55
2775 7782 4.313277 TCTCTGGTGAGAGCATTTATCG 57.687 45.455 0.00 0.00 44.96 2.92
2847 7854 9.797642 TCATAGATGTTATATGTGCCAGAAAAT 57.202 29.630 0.00 0.00 33.29 1.82
2868 7932 7.067372 TGGTTTTAATGACTGGCTCAATCATAG 59.933 37.037 0.60 0.00 32.74 2.23
2870 7934 5.716228 TGGTTTTAATGACTGGCTCAATCAT 59.284 36.000 0.00 0.00 34.52 2.45
2880 7944 5.953183 TGCAGCTTATGGTTTTAATGACTG 58.047 37.500 0.00 0.00 0.00 3.51
2881 7945 6.588719 TTGCAGCTTATGGTTTTAATGACT 57.411 33.333 0.00 0.00 0.00 3.41
2943 8132 6.950041 CCCTTGTGTTCCATTCCATATCATAT 59.050 38.462 0.00 0.00 0.00 1.78
2954 8143 9.881773 ATATATAAATGTCCCTTGTGTTCCATT 57.118 29.630 0.00 0.00 0.00 3.16
2994 8183 4.314961 TGATGACACTTTACGATGCACTT 58.685 39.130 0.00 0.00 0.00 3.16
2996 8185 4.329801 TCATGATGACACTTTACGATGCAC 59.670 41.667 0.00 0.00 0.00 4.57
3008 8197 9.630098 AAAACTTCAACAATATCATGATGACAC 57.370 29.630 18.72 0.00 32.65 3.67
3111 8309 3.303938 TGCTTGGGGTGAAGATTTGAAA 58.696 40.909 0.00 0.00 0.00 2.69
3114 8312 4.646040 TCATATGCTTGGGGTGAAGATTTG 59.354 41.667 0.00 0.00 0.00 2.32
3115 8313 4.870636 TCATATGCTTGGGGTGAAGATTT 58.129 39.130 0.00 0.00 0.00 2.17
3117 8315 4.736611 ATCATATGCTTGGGGTGAAGAT 57.263 40.909 0.00 0.00 0.00 2.40
3146 8344 9.197306 TGCTTTTAGAACTATCTCTGGTGTATA 57.803 33.333 0.00 0.00 37.10 1.47
3149 8347 6.360370 TGCTTTTAGAACTATCTCTGGTGT 57.640 37.500 0.00 0.00 37.10 4.16
3184 8395 1.195900 TGGTCTAACGTTGCGCAAATC 59.804 47.619 26.87 12.83 0.00 2.17
3185 8396 1.231221 TGGTCTAACGTTGCGCAAAT 58.769 45.000 26.87 16.44 0.00 2.32
3186 8397 1.195900 GATGGTCTAACGTTGCGCAAA 59.804 47.619 26.87 8.41 0.00 3.68
3189 8400 1.076332 AAGATGGTCTAACGTTGCGC 58.924 50.000 11.99 0.00 0.00 6.09
3208 8419 7.666623 CAAAAGCTTAACATAGAGGGGAAAAA 58.333 34.615 0.00 0.00 0.00 1.94
3209 8420 6.295067 GCAAAAGCTTAACATAGAGGGGAAAA 60.295 38.462 0.00 0.00 0.00 2.29
3212 8423 4.018415 AGCAAAAGCTTAACATAGAGGGGA 60.018 41.667 0.00 0.00 0.00 4.81
3213 8424 4.096984 CAGCAAAAGCTTAACATAGAGGGG 59.903 45.833 0.00 0.00 0.00 4.79
3214 8425 4.096984 CCAGCAAAAGCTTAACATAGAGGG 59.903 45.833 0.00 0.00 0.00 4.30
3215 8426 4.702131 ACCAGCAAAAGCTTAACATAGAGG 59.298 41.667 0.00 0.00 0.00 3.69
3217 8428 6.648879 AAACCAGCAAAAGCTTAACATAGA 57.351 33.333 0.00 0.00 0.00 1.98
3218 8429 8.986477 ATAAAACCAGCAAAAGCTTAACATAG 57.014 30.769 0.00 0.00 0.00 2.23
3222 8433 9.297586 GGTATATAAAACCAGCAAAAGCTTAAC 57.702 33.333 0.00 0.00 36.96 2.01
3223 8434 9.250246 AGGTATATAAAACCAGCAAAAGCTTAA 57.750 29.630 0.00 0.00 39.64 1.85
3224 8435 8.682710 CAGGTATATAAAACCAGCAAAAGCTTA 58.317 33.333 0.00 0.00 39.64 3.09
3258 8469 5.172687 TGGGAATGTCAACTAATGCTGTA 57.827 39.130 0.00 0.00 0.00 2.74
3261 8472 6.096846 GGTTATTGGGAATGTCAACTAATGCT 59.903 38.462 0.00 0.00 0.00 3.79
3265 8476 8.962679 GTATTGGTTATTGGGAATGTCAACTAA 58.037 33.333 0.00 0.00 0.00 2.24
3267 8478 7.122650 CAGTATTGGTTATTGGGAATGTCAACT 59.877 37.037 0.00 0.00 0.00 3.16
3268 8479 7.122055 TCAGTATTGGTTATTGGGAATGTCAAC 59.878 37.037 0.00 0.00 0.00 3.18
3270 8481 6.726379 TCAGTATTGGTTATTGGGAATGTCA 58.274 36.000 0.00 0.00 0.00 3.58
3283 8494 9.261180 CAGACATAATAACGATCAGTATTGGTT 57.739 33.333 7.74 0.00 0.00 3.67
3293 8504 4.151335 CCTGCAGCAGACATAATAACGATC 59.849 45.833 24.90 0.00 32.44 3.69
3901 9112 4.758251 CACCTGATCACGGCGGCA 62.758 66.667 13.24 2.69 0.00 5.69
3911 9122 3.640407 ACCGGCACAGCACCTGAT 61.640 61.111 0.00 0.00 35.18 2.90
3920 9131 4.560743 TCAGCAAGCACCGGCACA 62.561 61.111 0.00 0.00 44.61 4.57
3970 9182 3.976942 CAGCAGCTAACAACATCAACAAC 59.023 43.478 0.00 0.00 0.00 3.32
3971 9183 3.631686 ACAGCAGCTAACAACATCAACAA 59.368 39.130 0.00 0.00 0.00 2.83
3972 9184 3.213506 ACAGCAGCTAACAACATCAACA 58.786 40.909 0.00 0.00 0.00 3.33
3973 9185 3.904136 ACAGCAGCTAACAACATCAAC 57.096 42.857 0.00 0.00 0.00 3.18
3974 9186 5.473162 ACATAACAGCAGCTAACAACATCAA 59.527 36.000 0.00 0.00 0.00 2.57
3977 9189 5.964958 AACATAACAGCAGCTAACAACAT 57.035 34.783 0.00 0.00 0.00 2.71
3990 9202 5.975693 ACAACAATGGGGTAACATAACAG 57.024 39.130 0.00 0.00 39.74 3.16
4124 9339 1.300971 ATACAGCACAGCAAGGCACG 61.301 55.000 0.00 0.00 0.00 5.34
4134 9349 5.125356 CAGGGAAATGTATGATACAGCACA 58.875 41.667 11.32 0.00 42.77 4.57
4135 9350 5.126067 ACAGGGAAATGTATGATACAGCAC 58.874 41.667 11.32 4.53 42.77 4.40
4136 9351 5.372343 ACAGGGAAATGTATGATACAGCA 57.628 39.130 11.32 0.00 42.77 4.41
4137 9352 6.699575 AAACAGGGAAATGTATGATACAGC 57.300 37.500 11.32 3.36 42.77 4.40
4225 9440 0.099968 GACCATCGATTCGACCGACA 59.900 55.000 11.56 0.00 39.18 4.35
4226 9441 0.381089 AGACCATCGATTCGACCGAC 59.619 55.000 11.56 4.91 39.18 4.79
4227 9442 1.100510 AAGACCATCGATTCGACCGA 58.899 50.000 11.56 10.88 39.18 4.69
4228 9443 1.922570 AAAGACCATCGATTCGACCG 58.077 50.000 11.56 6.78 39.18 4.79
4229 9444 3.307242 CAGAAAAGACCATCGATTCGACC 59.693 47.826 11.56 1.55 39.18 4.79
4333 9550 7.201767 GCCCATATCACTTATCAGGCAATATTC 60.202 40.741 0.00 0.00 37.00 1.75
4355 9572 3.040206 GCTCTGCTCTCCATGCCCA 62.040 63.158 0.00 0.00 0.00 5.36
4367 9584 1.200020 AGTTTGGCGTTATTGCTCTGC 59.800 47.619 0.00 0.00 34.52 4.26
4376 9593 0.860533 GTACGTGCAGTTTGGCGTTA 59.139 50.000 0.00 0.00 38.56 3.18
4420 9638 5.059833 TGAATTGGGGTTGTTTAATTGCAC 58.940 37.500 0.00 0.00 0.00 4.57
4486 9704 4.513198 TTGTCCGGAAACCATTTGAATC 57.487 40.909 5.23 0.00 0.00 2.52
4520 9738 4.315628 CGTAATATATTTTGCTCGCGCTC 58.684 43.478 5.56 0.00 36.97 5.03
4521 9739 3.423123 GCGTAATATATTTTGCTCGCGCT 60.423 43.478 5.56 0.00 38.39 5.92
4527 9745 6.427150 CAGGAAACGCGTAATATATTTTGCT 58.573 36.000 14.46 8.34 0.00 3.91
4530 9748 6.056884 TCCCAGGAAACGCGTAATATATTTT 58.943 36.000 14.46 0.00 0.00 1.82
4577 9798 5.688807 AGCAAGTAATAATGGACATCTGCT 58.311 37.500 0.00 0.00 0.00 4.24
4763 9985 3.838903 CCAAGGGTCTAACCTGAAGTACT 59.161 47.826 0.00 0.00 40.87 2.73
4829 10051 4.684724 TGACCCTGGAGACCATATATACC 58.315 47.826 0.00 0.00 30.82 2.73
4839 10087 2.040412 AGAACCATTTGACCCTGGAGAC 59.960 50.000 0.00 0.00 36.35 3.36
4866 10114 3.179443 TGTGGACTCTGTTGTCTGAAC 57.821 47.619 0.00 0.00 37.16 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.