Multiple sequence alignment - TraesCS7A01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G143100 chr7A 100.000 2413 0 0 1 2413 94401303 94398891 0.000000e+00 4457
1 TraesCS7A01G143100 chr7A 83.858 1208 98 44 574 1736 94384833 94383678 0.000000e+00 1061
2 TraesCS7A01G143100 chr7A 93.333 165 7 4 2035 2195 670171810 670171646 8.620000e-60 241
3 TraesCS7A01G143100 chr7A 96.970 132 4 0 2282 2413 561168978 561168847 3.120000e-54 222
4 TraesCS7A01G143100 chr7D 87.472 1325 97 35 10 1288 92239037 92237736 0.000000e+00 1463
5 TraesCS7A01G143100 chr7D 81.855 744 65 37 463 1173 92235636 92234930 1.620000e-156 562
6 TraesCS7A01G143100 chr7D 86.417 508 46 7 1252 1740 92229912 92229409 3.530000e-148 534
7 TraesCS7A01G143100 chr7D 86.235 494 48 14 1254 1738 92237734 92237252 3.560000e-143 518
8 TraesCS7A01G143100 chr7D 83.951 486 40 21 821 1301 92230369 92229917 4.770000e-117 431
9 TraesCS7A01G143100 chr7D 89.404 151 8 1 677 819 92230561 92230411 1.470000e-42 183
10 TraesCS7A01G143100 chr7D 88.112 143 14 1 1249 1391 92234691 92234552 1.480000e-37 167
11 TraesCS7A01G143100 chr7D 100.000 85 0 0 2196 2280 579041960 579042044 8.930000e-35 158
12 TraesCS7A01G143100 chr7B 88.276 1160 76 27 821 1956 44272146 44271023 0.000000e+00 1334
13 TraesCS7A01G143100 chr7B 91.869 824 51 13 1 819 44294601 44293789 0.000000e+00 1136
14 TraesCS7A01G143100 chr7B 88.661 926 69 22 820 1736 44293751 44292853 0.000000e+00 1096
15 TraesCS7A01G143100 chr7B 83.786 1215 100 48 574 1741 44259087 44257923 0.000000e+00 1062
16 TraesCS7A01G143100 chr3A 92.469 239 14 2 1958 2195 686390839 686390604 2.970000e-89 339
17 TraesCS7A01G143100 chr3A 88.672 256 11 3 1958 2195 686456253 686455998 1.810000e-76 296
18 TraesCS7A01G143100 chr3A 96.992 133 2 1 2281 2413 689512816 689512686 3.120000e-54 222
19 TraesCS7A01G143100 chr3A 95.556 135 5 1 2279 2413 745511363 745511496 5.220000e-52 215
20 TraesCS7A01G143100 chr4A 88.933 253 12 5 1959 2195 2563234 2563486 5.040000e-77 298
21 TraesCS7A01G143100 chr4A 88.189 254 15 8 1959 2201 680018580 680018829 3.040000e-74 289
22 TraesCS7A01G143100 chr4A 88.163 245 22 4 1958 2195 435611085 435610841 3.930000e-73 285
23 TraesCS7A01G143100 chr2A 88.372 258 9 7 1958 2195 112623958 112624214 8.440000e-75 291
24 TraesCS7A01G143100 chr2A 88.492 252 10 2 1958 2190 696283275 696283526 1.090000e-73 287
25 TraesCS7A01G143100 chr2A 87.059 255 14 6 1959 2195 63370407 63370660 1.100000e-68 270
26 TraesCS7A01G143100 chr2A 87.866 239 10 4 1958 2195 716222251 716222471 1.840000e-66 263
27 TraesCS7A01G143100 chr2A 84.586 266 12 11 1959 2195 769656948 769656683 1.120000e-58 237
28 TraesCS7A01G143100 chr2A 96.241 133 3 1 2279 2411 63370661 63370791 1.450000e-52 217
29 TraesCS7A01G143100 chr5A 88.048 251 13 8 1958 2195 623505886 623506132 5.080000e-72 281
30 TraesCS7A01G143100 chr5A 86.770 257 14 9 1959 2195 665814260 665814516 3.950000e-68 268
31 TraesCS7A01G143100 chr5A 96.296 135 4 1 2279 2413 703675681 703675814 1.120000e-53 220
32 TraesCS7A01G143100 chr5A 95.556 135 4 1 2279 2413 460470689 460470821 5.220000e-52 215
33 TraesCS7A01G143100 chr6A 87.549 257 12 5 1959 2195 48259544 48259800 1.830000e-71 279
34 TraesCS7A01G143100 chr6A 96.269 134 3 1 2279 2412 48259801 48259932 4.040000e-53 219
35 TraesCS7A01G143100 chr6A 96.212 132 3 1 2282 2413 224624773 224624644 5.220000e-52 215
36 TraesCS7A01G143100 chrUn 84.644 267 11 11 1959 2195 33331963 33332229 3.100000e-59 239
37 TraesCS7A01G143100 chrUn 84.644 267 11 11 1959 2195 462627395 462627129 3.100000e-59 239
38 TraesCS7A01G143100 chrUn 100.000 85 0 0 2196 2280 378556765 378556849 8.930000e-35 158
39 TraesCS7A01G143100 chrUn 100.000 85 0 0 2196 2280 424119122 424119206 8.930000e-35 158
40 TraesCS7A01G143100 chrUn 100.000 85 0 0 2196 2280 430365904 430365820 8.930000e-35 158
41 TraesCS7A01G143100 chr1A 97.778 135 3 0 2279 2413 517643705 517643839 1.440000e-57 233
42 TraesCS7A01G143100 chr6D 100.000 85 0 0 2196 2280 369988114 369988030 8.930000e-35 158
43 TraesCS7A01G143100 chr6D 100.000 85 0 0 2196 2280 370022743 370022827 8.930000e-35 158
44 TraesCS7A01G143100 chr5D 100.000 85 0 0 2196 2280 80018212 80018128 8.930000e-35 158
45 TraesCS7A01G143100 chr2D 100.000 85 0 0 2196 2280 39656879 39656963 8.930000e-35 158
46 TraesCS7A01G143100 chr1D 100.000 85 0 0 2196 2280 204063466 204063550 8.930000e-35 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G143100 chr7A 94398891 94401303 2412 True 4457.000000 4457 100.000000 1 2413 1 chr7A.!!$R2 2412
1 TraesCS7A01G143100 chr7A 94383678 94384833 1155 True 1061.000000 1061 83.858000 574 1736 1 chr7A.!!$R1 1162
2 TraesCS7A01G143100 chr7D 92229409 92239037 9628 True 551.142857 1463 86.206571 10 1740 7 chr7D.!!$R1 1730
3 TraesCS7A01G143100 chr7B 44271023 44272146 1123 True 1334.000000 1334 88.276000 821 1956 1 chr7B.!!$R2 1135
4 TraesCS7A01G143100 chr7B 44292853 44294601 1748 True 1116.000000 1136 90.265000 1 1736 2 chr7B.!!$R3 1735
5 TraesCS7A01G143100 chr7B 44257923 44259087 1164 True 1062.000000 1062 83.786000 574 1741 1 chr7B.!!$R1 1167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
410 417 0.034059 ACCAGTCCAACTTCTCTGCG 59.966 55.0 0.0 0.0 0.0 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 10050 0.030908 ATAGCCTAGAACGAGCGTGC 59.969 55.0 0.0 0.0 0.0 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 118 1.376553 GTCCTGGTGAAGAGGCTGC 60.377 63.158 0.00 0.00 0.00 5.25
127 131 4.695231 GCTGCGTGCCTTGCTGTG 62.695 66.667 0.00 0.00 35.15 3.66
215 219 0.537188 AACTCCATCGCCGTGAATCT 59.463 50.000 0.00 0.00 0.00 2.40
216 220 0.179100 ACTCCATCGCCGTGAATCTG 60.179 55.000 0.00 0.00 0.00 2.90
217 221 0.179100 CTCCATCGCCGTGAATCTGT 60.179 55.000 0.00 0.00 0.00 3.41
218 222 0.179111 TCCATCGCCGTGAATCTGTC 60.179 55.000 0.00 0.00 0.00 3.51
219 223 1.482621 CCATCGCCGTGAATCTGTCG 61.483 60.000 0.00 0.00 0.00 4.35
278 282 5.703978 TGAATTGTCAATTACCAGGTGTG 57.296 39.130 10.80 0.00 0.00 3.82
281 285 5.964958 ATTGTCAATTACCAGGTGTGAAG 57.035 39.130 0.76 0.00 0.00 3.02
289 293 5.755409 TTACCAGGTGTGAAGACATACAT 57.245 39.130 0.76 0.00 39.36 2.29
323 329 1.534595 GAGCTGAACACAAAGGAGCAG 59.465 52.381 0.00 0.00 31.80 4.24
345 351 8.327271 AGCAGAATATTGCCTGATAAGTGATAT 58.673 33.333 8.05 0.00 45.18 1.63
357 363 3.784511 AAGTGATATGGGCATGGAGAG 57.215 47.619 0.00 0.00 0.00 3.20
366 372 0.465824 GGCATGGAGAGCAGAGCAAT 60.466 55.000 0.00 0.00 0.00 3.56
410 417 0.034059 ACCAGTCCAACTTCTCTGCG 59.966 55.000 0.00 0.00 0.00 5.18
476 483 1.797348 GCATGCAATTAAACGACCCCG 60.797 52.381 14.21 0.00 42.50 5.73
510 517 1.463674 CGGACAATTTTCTGGAGGGG 58.536 55.000 0.00 0.00 0.00 4.79
511 518 1.004277 CGGACAATTTTCTGGAGGGGA 59.996 52.381 0.00 0.00 0.00 4.81
627 637 6.040054 TGACAGCATTCTTAATCCCATCATTG 59.960 38.462 0.00 0.00 0.00 2.82
753 764 4.535781 ACAATGGCTACATTCCTGCATTA 58.464 39.130 0.00 0.00 45.24 1.90
792 803 1.878522 GGCCGCAGACATGAGTACG 60.879 63.158 0.00 0.00 0.00 3.67
833 8699 1.761198 GGCCGGGGTATATATGGTCTC 59.239 57.143 2.18 0.00 0.00 3.36
856 8724 3.755378 CAGGGTCAAATGGTTCTTCAGAG 59.245 47.826 0.00 0.00 0.00 3.35
857 8725 3.395941 AGGGTCAAATGGTTCTTCAGAGT 59.604 43.478 0.00 0.00 0.00 3.24
858 8726 4.141158 AGGGTCAAATGGTTCTTCAGAGTT 60.141 41.667 0.00 0.00 0.00 3.01
859 8727 4.216472 GGGTCAAATGGTTCTTCAGAGTTC 59.784 45.833 0.00 0.00 0.00 3.01
860 8728 4.821805 GGTCAAATGGTTCTTCAGAGTTCA 59.178 41.667 0.00 0.00 0.00 3.18
861 8729 5.049129 GGTCAAATGGTTCTTCAGAGTTCAG 60.049 44.000 0.00 0.00 0.00 3.02
862 8730 5.760253 GTCAAATGGTTCTTCAGAGTTCAGA 59.240 40.000 0.00 0.00 0.00 3.27
880 8754 1.069823 AGACAACAGAGTCCACAGCTG 59.930 52.381 13.48 13.48 39.34 4.24
940 8814 2.620585 AGCTGAGTTTGAAGGCTTGAAC 59.379 45.455 3.46 9.65 0.00 3.18
941 8815 2.603173 GCTGAGTTTGAAGGCTTGAACG 60.603 50.000 3.46 0.00 0.00 3.95
960 8835 2.202492 CGTTCGTCTCCCAGCTCG 60.202 66.667 0.00 0.00 0.00 5.03
977 8852 2.672760 GCTCGACTCTTTCAAGGTCCTC 60.673 54.545 0.00 0.00 0.00 3.71
996 8871 3.065510 CCTCACACAGATACTGGACGTAG 59.934 52.174 0.00 0.00 35.51 3.51
1021 8896 2.758089 GCGAAGACATGCCTGCCAG 61.758 63.158 0.00 0.00 0.00 4.85
1147 9022 2.954318 AGTGATTGCAGCTGTTGTTTCT 59.046 40.909 16.64 5.26 0.00 2.52
1172 9047 4.483683 CGATGTGTCGTTGCGCGG 62.484 66.667 8.83 0.00 42.78 6.46
1173 9048 4.794241 GATGTGTCGTTGCGCGGC 62.794 66.667 8.83 0.00 46.88 6.53
1208 9084 4.155280 GCTTCTGCTTATTTGGAACGGTTA 59.845 41.667 0.00 0.00 36.03 2.85
1212 9088 5.584649 TCTGCTTATTTGGAACGGTTATCTG 59.415 40.000 0.00 0.00 0.00 2.90
1289 9167 0.179043 AGGCTGATGATGCTGAGCAG 60.179 55.000 14.36 0.00 43.65 4.24
1295 9227 1.793532 GATGATGCTGAGCAGTCATCG 59.206 52.381 27.49 0.00 43.65 3.84
1303 9235 0.460987 GAGCAGTCATCGGGTGAAGG 60.461 60.000 0.00 0.00 38.90 3.46
1307 9239 0.042131 AGTCATCGGGTGAAGGGGTA 59.958 55.000 0.00 0.00 38.90 3.69
1319 9251 0.949582 AAGGGGTAGAGGAGGCCATA 59.050 55.000 5.01 0.00 0.00 2.74
1328 9260 3.238597 AGAGGAGGCCATATCTGAAGAC 58.761 50.000 5.01 0.00 0.00 3.01
1415 9347 2.821366 GCCAGGCACCACTGATCG 60.821 66.667 6.55 0.00 40.97 3.69
1667 9618 1.604278 GCTCTTGTATGGCCGGAAATC 59.396 52.381 5.05 0.00 0.00 2.17
1776 9730 1.151668 CAGTTTTGCTCAGGACGGAG 58.848 55.000 0.00 0.00 37.97 4.63
1824 9778 2.679639 GCAGGGACATCGAAATGGTGTA 60.680 50.000 0.00 0.00 37.19 2.90
1904 9858 3.254166 AGGCGCTCCTGCATATTTATTTG 59.746 43.478 7.64 0.00 42.34 2.32
1941 9895 5.009610 CCGGGCACATAAAATAGCTTATGTT 59.990 40.000 6.12 0.00 45.83 2.71
1956 9910 9.793252 ATAGCTTATGTTACAGCAAAATTGAAG 57.207 29.630 0.00 0.00 38.61 3.02
1957 9911 7.661040 AGCTTATGTTACAGCAAAATTGAAGT 58.339 30.769 0.00 0.00 38.61 3.01
1958 9912 8.792633 AGCTTATGTTACAGCAAAATTGAAGTA 58.207 29.630 0.00 0.00 38.61 2.24
1959 9913 9.065871 GCTTATGTTACAGCAAAATTGAAGTAG 57.934 33.333 0.00 0.00 35.95 2.57
1962 9916 6.668323 TGTTACAGCAAAATTGAAGTAGAGC 58.332 36.000 0.00 0.00 0.00 4.09
1963 9917 6.262049 TGTTACAGCAAAATTGAAGTAGAGCA 59.738 34.615 0.00 0.00 0.00 4.26
1964 9918 5.972107 ACAGCAAAATTGAAGTAGAGCAT 57.028 34.783 0.00 0.00 0.00 3.79
1965 9919 5.947443 ACAGCAAAATTGAAGTAGAGCATC 58.053 37.500 0.00 0.00 0.00 3.91
1976 9930 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
1977 9931 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
1978 9932 3.512516 GCATCTCCAACAGGCGCC 61.513 66.667 21.89 21.89 0.00 6.53
1979 9933 3.197790 CATCTCCAACAGGCGCCG 61.198 66.667 23.20 18.60 0.00 6.46
1980 9934 4.473520 ATCTCCAACAGGCGCCGG 62.474 66.667 25.72 25.72 0.00 6.13
2013 9967 3.028760 AAAAACACATATGCCGCGC 57.971 47.368 0.00 0.00 0.00 6.86
2014 9968 0.242286 AAAAACACATATGCCGCGCA 59.758 45.000 8.75 2.46 44.86 6.09
2015 9969 0.455972 AAAACACATATGCCGCGCAC 60.456 50.000 8.75 0.00 43.04 5.34
2016 9970 2.576287 AAACACATATGCCGCGCACG 62.576 55.000 8.75 0.00 43.04 5.34
2017 9971 4.943591 CACATATGCCGCGCACGC 62.944 66.667 8.75 9.14 43.04 5.34
2019 9973 4.016629 CATATGCCGCGCACGCAT 62.017 61.111 28.42 28.42 43.04 4.73
2020 9974 3.716006 ATATGCCGCGCACGCATC 61.716 61.111 29.04 6.22 43.04 3.91
2029 9983 3.737172 GCACGCATCGGCTGGTTT 61.737 61.111 0.00 0.00 38.10 3.27
2030 9984 2.176546 CACGCATCGGCTGGTTTG 59.823 61.111 0.00 0.00 38.10 2.93
2031 9985 3.055719 ACGCATCGGCTGGTTTGG 61.056 61.111 0.00 0.00 38.10 3.28
2032 9986 4.481112 CGCATCGGCTGGTTTGGC 62.481 66.667 0.00 0.00 38.10 4.52
2067 10021 4.819761 CTCCAGCAGCCGCGCTAA 62.820 66.667 5.56 1.87 45.49 3.09
2068 10022 4.386951 TCCAGCAGCCGCGCTAAA 62.387 61.111 5.56 0.00 45.49 1.85
2069 10023 3.430862 CCAGCAGCCGCGCTAAAA 61.431 61.111 5.56 0.00 45.49 1.52
2070 10024 2.764314 CCAGCAGCCGCGCTAAAAT 61.764 57.895 5.56 0.00 45.49 1.82
2071 10025 1.584483 CAGCAGCCGCGCTAAAATG 60.584 57.895 5.56 0.00 45.49 2.32
2072 10026 2.951227 GCAGCCGCGCTAAAATGC 60.951 61.111 5.56 4.97 36.40 3.56
2073 10027 2.484662 CAGCCGCGCTAAAATGCA 59.515 55.556 5.56 0.00 36.40 3.96
2074 10028 1.584483 CAGCCGCGCTAAAATGCAG 60.584 57.895 5.56 0.00 36.40 4.41
2075 10029 2.951227 GCCGCGCTAAAATGCAGC 60.951 61.111 5.56 0.00 35.61 5.25
2080 10034 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
2081 10035 3.307262 CTAAAATGCAGCGCGCGC 61.307 61.111 45.10 45.10 46.97 6.86
2082 10036 4.827731 TAAAATGCAGCGCGCGCC 62.828 61.111 46.98 34.04 46.97 6.53
2110 10064 3.598562 CGCGCACGCTCGTTCTAG 61.599 66.667 13.70 0.00 39.32 2.43
2111 10065 3.248171 GCGCACGCTCGTTCTAGG 61.248 66.667 7.96 0.00 38.26 3.02
2112 10066 3.248171 CGCACGCTCGTTCTAGGC 61.248 66.667 0.00 0.00 0.00 3.93
2113 10067 2.182030 GCACGCTCGTTCTAGGCT 59.818 61.111 0.00 0.00 0.00 4.58
2114 10068 1.432251 GCACGCTCGTTCTAGGCTA 59.568 57.895 0.00 0.00 0.00 3.93
2115 10069 0.030908 GCACGCTCGTTCTAGGCTAT 59.969 55.000 0.00 0.00 0.00 2.97
2116 10070 1.536284 GCACGCTCGTTCTAGGCTATT 60.536 52.381 0.00 0.00 0.00 1.73
2117 10071 2.120232 CACGCTCGTTCTAGGCTATTG 58.880 52.381 0.00 0.00 0.00 1.90
2118 10072 1.067212 ACGCTCGTTCTAGGCTATTGG 59.933 52.381 0.00 0.00 0.00 3.16
2119 10073 1.337071 CGCTCGTTCTAGGCTATTGGA 59.663 52.381 0.00 0.00 0.00 3.53
2120 10074 2.223735 CGCTCGTTCTAGGCTATTGGAA 60.224 50.000 0.00 0.00 0.00 3.53
2121 10075 3.737047 CGCTCGTTCTAGGCTATTGGAAA 60.737 47.826 0.00 0.00 0.00 3.13
2122 10076 4.189231 GCTCGTTCTAGGCTATTGGAAAA 58.811 43.478 0.00 0.00 0.00 2.29
2123 10077 4.816925 GCTCGTTCTAGGCTATTGGAAAAT 59.183 41.667 0.00 0.00 0.00 1.82
2124 10078 5.989777 GCTCGTTCTAGGCTATTGGAAAATA 59.010 40.000 0.00 0.00 0.00 1.40
2125 10079 6.146347 GCTCGTTCTAGGCTATTGGAAAATAG 59.854 42.308 0.00 1.85 36.17 1.73
2126 10080 7.356089 TCGTTCTAGGCTATTGGAAAATAGA 57.644 36.000 9.18 0.00 35.31 1.98
2127 10081 7.963532 TCGTTCTAGGCTATTGGAAAATAGAT 58.036 34.615 9.18 0.92 35.31 1.98
2128 10082 9.085645 TCGTTCTAGGCTATTGGAAAATAGATA 57.914 33.333 9.18 1.85 35.31 1.98
2129 10083 9.360093 CGTTCTAGGCTATTGGAAAATAGATAG 57.640 37.037 9.18 9.43 35.31 2.08
2134 10088 8.572855 AGGCTATTGGAAAATAGATAGATTGC 57.427 34.615 9.18 0.00 35.31 3.56
2135 10089 8.166061 AGGCTATTGGAAAATAGATAGATTGCA 58.834 33.333 9.18 0.00 35.31 4.08
2136 10090 8.964772 GGCTATTGGAAAATAGATAGATTGCAT 58.035 33.333 9.18 0.00 35.31 3.96
2170 10124 9.537192 AACGATACAAAGATATTTTACATCGGA 57.463 29.630 17.63 0.00 37.62 4.55
2171 10125 9.537192 ACGATACAAAGATATTTTACATCGGAA 57.463 29.630 17.63 0.00 37.62 4.30
2183 10137 6.993786 TTTACATCGGAAACATAGATTGCA 57.006 33.333 0.00 0.00 0.00 4.08
2184 10138 7.566760 TTTACATCGGAAACATAGATTGCAT 57.433 32.000 0.00 0.00 0.00 3.96
2185 10139 8.669946 TTTACATCGGAAACATAGATTGCATA 57.330 30.769 0.00 0.00 0.00 3.14
2186 10140 8.669946 TTACATCGGAAACATAGATTGCATAA 57.330 30.769 0.00 0.00 0.00 1.90
2187 10141 7.750229 ACATCGGAAACATAGATTGCATAAT 57.250 32.000 0.00 0.00 0.00 1.28
2188 10142 8.846943 ACATCGGAAACATAGATTGCATAATA 57.153 30.769 0.00 0.00 0.00 0.98
2189 10143 9.283768 ACATCGGAAACATAGATTGCATAATAA 57.716 29.630 0.00 0.00 0.00 1.40
2206 10160 9.545105 TGCATAATAATAAAAGCTCAATTTGGG 57.455 29.630 0.00 0.00 0.00 4.12
2207 10161 9.546428 GCATAATAATAAAAGCTCAATTTGGGT 57.454 29.630 0.00 0.00 0.00 4.51
2211 10165 6.916360 AATAAAAGCTCAATTTGGGTCAGA 57.084 33.333 0.00 0.00 0.00 3.27
2212 10166 4.590850 AAAAGCTCAATTTGGGTCAGAC 57.409 40.909 0.00 0.00 0.00 3.51
2213 10167 2.206576 AGCTCAATTTGGGTCAGACC 57.793 50.000 11.70 11.70 37.60 3.85
2214 10168 1.707427 AGCTCAATTTGGGTCAGACCT 59.293 47.619 19.57 0.00 38.64 3.85
2215 10169 2.108952 AGCTCAATTTGGGTCAGACCTT 59.891 45.455 19.57 2.67 38.64 3.50
2216 10170 2.229784 GCTCAATTTGGGTCAGACCTTG 59.770 50.000 19.57 15.01 38.64 3.61
2217 10171 3.754965 CTCAATTTGGGTCAGACCTTGA 58.245 45.455 19.57 18.10 38.64 3.02
2218 10172 4.338879 CTCAATTTGGGTCAGACCTTGAT 58.661 43.478 19.57 7.77 38.64 2.57
2219 10173 4.081406 TCAATTTGGGTCAGACCTTGATG 58.919 43.478 19.57 11.91 38.64 3.07
2220 10174 1.909700 TTTGGGTCAGACCTTGATGC 58.090 50.000 19.57 1.93 38.64 3.91
2221 10175 1.067295 TTGGGTCAGACCTTGATGCT 58.933 50.000 19.57 0.00 38.64 3.79
2222 10176 0.325933 TGGGTCAGACCTTGATGCTG 59.674 55.000 19.57 0.00 38.64 4.41
2223 10177 1.028868 GGGTCAGACCTTGATGCTGC 61.029 60.000 19.57 0.00 38.64 5.25
2224 10178 1.364626 GGTCAGACCTTGATGCTGCG 61.365 60.000 12.94 0.00 38.29 5.18
2225 10179 0.390340 GTCAGACCTTGATGCTGCGA 60.390 55.000 0.00 0.00 38.29 5.10
2226 10180 0.390340 TCAGACCTTGATGCTGCGAC 60.390 55.000 0.00 0.00 0.00 5.19
2227 10181 0.390866 CAGACCTTGATGCTGCGACT 60.391 55.000 0.00 0.00 0.00 4.18
2228 10182 0.108424 AGACCTTGATGCTGCGACTC 60.108 55.000 0.00 0.00 0.00 3.36
2229 10183 0.390340 GACCTTGATGCTGCGACTCA 60.390 55.000 0.00 0.00 0.00 3.41
2230 10184 0.390866 ACCTTGATGCTGCGACTCAG 60.391 55.000 0.00 0.00 45.62 3.35
2231 10185 1.088340 CCTTGATGCTGCGACTCAGG 61.088 60.000 0.00 0.00 43.06 3.86
2232 10186 1.703438 CTTGATGCTGCGACTCAGGC 61.703 60.000 0.00 0.00 43.06 4.85
2233 10187 2.125391 GATGCTGCGACTCAGGCA 60.125 61.111 0.00 0.00 43.06 4.75
2234 10188 1.523258 GATGCTGCGACTCAGGCAT 60.523 57.895 0.00 0.00 43.06 4.40
2235 10189 1.077930 ATGCTGCGACTCAGGCATT 60.078 52.632 0.00 0.00 43.06 3.56
2236 10190 0.178767 ATGCTGCGACTCAGGCATTA 59.821 50.000 0.00 0.00 43.06 1.90
2237 10191 0.740868 TGCTGCGACTCAGGCATTAC 60.741 55.000 0.00 0.00 43.06 1.89
2238 10192 0.460987 GCTGCGACTCAGGCATTACT 60.461 55.000 0.00 0.00 43.06 2.24
2239 10193 1.565305 CTGCGACTCAGGCATTACTC 58.435 55.000 0.00 0.00 40.09 2.59
2240 10194 0.894835 TGCGACTCAGGCATTACTCA 59.105 50.000 0.00 0.00 35.04 3.41
2241 10195 1.275010 TGCGACTCAGGCATTACTCAA 59.725 47.619 0.00 0.00 35.04 3.02
2242 10196 2.093500 TGCGACTCAGGCATTACTCAAT 60.093 45.455 0.00 0.00 35.04 2.57
2243 10197 3.132111 TGCGACTCAGGCATTACTCAATA 59.868 43.478 0.00 0.00 35.04 1.90
2244 10198 3.738282 GCGACTCAGGCATTACTCAATAG 59.262 47.826 0.00 0.00 0.00 1.73
2245 10199 4.499865 GCGACTCAGGCATTACTCAATAGA 60.500 45.833 0.00 0.00 0.00 1.98
2246 10200 8.609206 TGCGACTCAGGCATTACTCAATAGAG 62.609 46.154 0.00 0.00 40.65 2.43
2247 10201 5.537188 GACTCAGGCATTACTCAATAGAGG 58.463 45.833 0.00 0.00 46.44 3.69
2248 10202 4.965532 ACTCAGGCATTACTCAATAGAGGT 59.034 41.667 0.00 0.00 46.44 3.85
2249 10203 5.163364 ACTCAGGCATTACTCAATAGAGGTG 60.163 44.000 0.00 0.00 46.44 4.00
2250 10204 3.812053 CAGGCATTACTCAATAGAGGTGC 59.188 47.826 9.67 9.67 46.44 5.01
2251 10205 3.455910 AGGCATTACTCAATAGAGGTGCA 59.544 43.478 15.99 0.00 46.44 4.57
2252 10206 4.080356 AGGCATTACTCAATAGAGGTGCAA 60.080 41.667 15.99 0.46 46.44 4.08
2253 10207 4.274459 GGCATTACTCAATAGAGGTGCAAG 59.726 45.833 15.99 0.00 46.44 4.01
2254 10208 4.274459 GCATTACTCAATAGAGGTGCAAGG 59.726 45.833 11.93 0.00 46.44 3.61
2255 10209 2.409948 ACTCAATAGAGGTGCAAGGC 57.590 50.000 0.00 0.00 46.44 4.35
2256 10210 1.912043 ACTCAATAGAGGTGCAAGGCT 59.088 47.619 0.00 0.00 46.44 4.58
2257 10211 2.307098 ACTCAATAGAGGTGCAAGGCTT 59.693 45.455 0.00 0.00 46.44 4.35
2258 10212 3.519510 ACTCAATAGAGGTGCAAGGCTTA 59.480 43.478 0.00 0.00 46.44 3.09
2259 10213 3.873910 TCAATAGAGGTGCAAGGCTTAC 58.126 45.455 0.00 0.00 0.00 2.34
2260 10214 3.263170 TCAATAGAGGTGCAAGGCTTACA 59.737 43.478 0.00 0.00 0.00 2.41
2261 10215 3.550437 ATAGAGGTGCAAGGCTTACAG 57.450 47.619 0.00 0.00 0.00 2.74
2262 10216 1.352083 AGAGGTGCAAGGCTTACAGA 58.648 50.000 0.00 0.00 0.00 3.41
2263 10217 1.699634 AGAGGTGCAAGGCTTACAGAA 59.300 47.619 0.00 0.00 0.00 3.02
2264 10218 2.079925 GAGGTGCAAGGCTTACAGAAG 58.920 52.381 0.00 0.00 35.60 2.85
2265 10219 1.421646 AGGTGCAAGGCTTACAGAAGT 59.578 47.619 0.00 0.00 34.90 3.01
2266 10220 1.537202 GGTGCAAGGCTTACAGAAGTG 59.463 52.381 0.00 0.00 34.90 3.16
2267 10221 1.068954 GTGCAAGGCTTACAGAAGTGC 60.069 52.381 0.00 0.00 34.40 4.40
2268 10222 0.523519 GCAAGGCTTACAGAAGTGCC 59.476 55.000 0.00 0.00 45.21 5.01
2269 10223 1.168714 CAAGGCTTACAGAAGTGCCC 58.831 55.000 0.00 0.00 45.94 5.36
2270 10224 0.771127 AAGGCTTACAGAAGTGCCCA 59.229 50.000 0.00 0.00 45.94 5.36
2271 10225 0.771127 AGGCTTACAGAAGTGCCCAA 59.229 50.000 0.00 0.00 45.94 4.12
2272 10226 1.144913 AGGCTTACAGAAGTGCCCAAA 59.855 47.619 0.00 0.00 45.94 3.28
2273 10227 1.269723 GGCTTACAGAAGTGCCCAAAC 59.730 52.381 0.00 0.00 39.49 2.93
2274 10228 1.953686 GCTTACAGAAGTGCCCAAACA 59.046 47.619 0.00 0.00 34.90 2.83
2275 10229 2.360801 GCTTACAGAAGTGCCCAAACAA 59.639 45.455 0.00 0.00 34.90 2.83
2276 10230 3.795488 GCTTACAGAAGTGCCCAAACAAC 60.795 47.826 0.00 0.00 34.90 3.32
2277 10231 1.111277 ACAGAAGTGCCCAAACAACC 58.889 50.000 0.00 0.00 0.00 3.77
2278 10232 1.110442 CAGAAGTGCCCAAACAACCA 58.890 50.000 0.00 0.00 0.00 3.67
2279 10233 1.111277 AGAAGTGCCCAAACAACCAC 58.889 50.000 0.00 0.00 0.00 4.16
2280 10234 0.248866 GAAGTGCCCAAACAACCACG 60.249 55.000 0.00 0.00 33.62 4.94
2281 10235 0.681564 AAGTGCCCAAACAACCACGA 60.682 50.000 0.00 0.00 33.62 4.35
2282 10236 1.065109 GTGCCCAAACAACCACGAC 59.935 57.895 0.00 0.00 0.00 4.34
2283 10237 1.378646 TGCCCAAACAACCACGACA 60.379 52.632 0.00 0.00 0.00 4.35
2284 10238 0.965866 TGCCCAAACAACCACGACAA 60.966 50.000 0.00 0.00 0.00 3.18
2285 10239 0.173708 GCCCAAACAACCACGACAAA 59.826 50.000 0.00 0.00 0.00 2.83
2286 10240 1.915952 CCCAAACAACCACGACAAAC 58.084 50.000 0.00 0.00 0.00 2.93
2288 10242 1.130749 CCAAACAACCACGACAAACGA 59.869 47.619 0.00 0.00 45.77 3.85
2289 10243 2.223386 CCAAACAACCACGACAAACGAT 60.223 45.455 0.00 0.00 45.77 3.73
2290 10244 3.002451 CCAAACAACCACGACAAACGATA 59.998 43.478 0.00 0.00 45.77 2.92
2291 10245 4.496010 CCAAACAACCACGACAAACGATAA 60.496 41.667 0.00 0.00 45.77 1.75
2292 10246 4.879104 AACAACCACGACAAACGATAAA 57.121 36.364 0.00 0.00 45.77 1.40
2293 10247 4.879104 ACAACCACGACAAACGATAAAA 57.121 36.364 0.00 0.00 45.77 1.52
2294 10248 4.590226 ACAACCACGACAAACGATAAAAC 58.410 39.130 0.00 0.00 45.77 2.43
2295 10249 4.094590 ACAACCACGACAAACGATAAAACA 59.905 37.500 0.00 0.00 45.77 2.83
2296 10250 4.199840 ACCACGACAAACGATAAAACAC 57.800 40.909 0.00 0.00 45.77 3.32
2297 10251 3.212103 CCACGACAAACGATAAAACACG 58.788 45.455 0.00 0.00 45.77 4.49
2298 10252 3.060406 CCACGACAAACGATAAAACACGA 60.060 43.478 0.00 0.00 45.77 4.35
2299 10253 4.131714 CACGACAAACGATAAAACACGAG 58.868 43.478 0.00 0.00 45.77 4.18
2300 10254 4.043750 ACGACAAACGATAAAACACGAGA 58.956 39.130 0.00 0.00 45.77 4.04
2301 10255 4.682860 ACGACAAACGATAAAACACGAGAT 59.317 37.500 0.00 0.00 45.77 2.75
2302 10256 5.858049 ACGACAAACGATAAAACACGAGATA 59.142 36.000 0.00 0.00 45.77 1.98
2303 10257 6.033196 ACGACAAACGATAAAACACGAGATAG 59.967 38.462 0.00 0.00 45.77 2.08
2304 10258 6.249893 CGACAAACGATAAAACACGAGATAGA 59.750 38.462 0.00 0.00 45.77 1.98
2305 10259 7.044249 CGACAAACGATAAAACACGAGATAGAT 60.044 37.037 0.00 0.00 45.77 1.98
2306 10260 8.475331 ACAAACGATAAAACACGAGATAGATT 57.525 30.769 0.00 0.00 0.00 2.40
2307 10261 8.380644 ACAAACGATAAAACACGAGATAGATTG 58.619 33.333 0.00 0.00 0.00 2.67
2308 10262 6.512177 ACGATAAAACACGAGATAGATTGC 57.488 37.500 0.00 0.00 0.00 3.56
2309 10263 6.040247 ACGATAAAACACGAGATAGATTGCA 58.960 36.000 0.00 0.00 0.00 4.08
2310 10264 6.701841 ACGATAAAACACGAGATAGATTGCAT 59.298 34.615 0.00 0.00 0.00 3.96
2311 10265 7.865889 ACGATAAAACACGAGATAGATTGCATA 59.134 33.333 0.00 0.00 0.00 3.14
2312 10266 8.699749 CGATAAAACACGAGATAGATTGCATAA 58.300 33.333 0.00 0.00 0.00 1.90
2341 10295 9.817809 AAAAATTAGTCTAAGTCGCTATCATCA 57.182 29.630 0.00 0.00 0.00 3.07
2342 10296 8.804688 AAATTAGTCTAAGTCGCTATCATCAC 57.195 34.615 0.00 0.00 0.00 3.06
2343 10297 7.753309 ATTAGTCTAAGTCGCTATCATCACT 57.247 36.000 0.00 0.00 0.00 3.41
2344 10298 8.850007 ATTAGTCTAAGTCGCTATCATCACTA 57.150 34.615 0.00 0.00 0.00 2.74
2345 10299 8.850007 TTAGTCTAAGTCGCTATCATCACTAT 57.150 34.615 0.00 0.00 0.00 2.12
2346 10300 7.372451 AGTCTAAGTCGCTATCATCACTATC 57.628 40.000 0.00 0.00 0.00 2.08
2347 10301 6.091577 AGTCTAAGTCGCTATCATCACTATCG 59.908 42.308 0.00 0.00 0.00 2.92
2348 10302 5.932883 TCTAAGTCGCTATCATCACTATCGT 59.067 40.000 0.00 0.00 0.00 3.73
2349 10303 4.671880 AGTCGCTATCATCACTATCGTC 57.328 45.455 0.00 0.00 0.00 4.20
2350 10304 4.065789 AGTCGCTATCATCACTATCGTCA 58.934 43.478 0.00 0.00 0.00 4.35
2351 10305 4.697828 AGTCGCTATCATCACTATCGTCAT 59.302 41.667 0.00 0.00 0.00 3.06
2352 10306 5.025190 GTCGCTATCATCACTATCGTCATC 58.975 45.833 0.00 0.00 0.00 2.92
2353 10307 4.095036 TCGCTATCATCACTATCGTCATCC 59.905 45.833 0.00 0.00 0.00 3.51
2354 10308 4.095632 CGCTATCATCACTATCGTCATCCT 59.904 45.833 0.00 0.00 0.00 3.24
2355 10309 5.577835 GCTATCATCACTATCGTCATCCTC 58.422 45.833 0.00 0.00 0.00 3.71
2356 10310 5.449862 GCTATCATCACTATCGTCATCCTCC 60.450 48.000 0.00 0.00 0.00 4.30
2357 10311 4.105754 TCATCACTATCGTCATCCTCCT 57.894 45.455 0.00 0.00 0.00 3.69
2358 10312 4.075682 TCATCACTATCGTCATCCTCCTC 58.924 47.826 0.00 0.00 0.00 3.71
2359 10313 2.495084 TCACTATCGTCATCCTCCTCG 58.505 52.381 0.00 0.00 0.00 4.63
2360 10314 1.537638 CACTATCGTCATCCTCCTCGG 59.462 57.143 0.00 0.00 0.00 4.63
2361 10315 0.523966 CTATCGTCATCCTCCTCGGC 59.476 60.000 0.00 0.00 0.00 5.54
2362 10316 1.235281 TATCGTCATCCTCCTCGGCG 61.235 60.000 0.00 0.00 0.00 6.46
2363 10317 4.271816 CGTCATCCTCCTCGGCGG 62.272 72.222 7.21 0.00 0.00 6.13
2364 10318 3.148279 GTCATCCTCCTCGGCGGT 61.148 66.667 7.21 0.00 0.00 5.68
2365 10319 3.147595 TCATCCTCCTCGGCGGTG 61.148 66.667 7.21 0.00 0.00 4.94
2366 10320 3.461773 CATCCTCCTCGGCGGTGT 61.462 66.667 7.21 0.00 0.00 4.16
2367 10321 3.148279 ATCCTCCTCGGCGGTGTC 61.148 66.667 7.21 0.00 0.00 3.67
2370 10324 4.477975 CTCCTCGGCGGTGTCGTC 62.478 72.222 7.21 0.00 38.89 4.20
2380 10334 1.732308 GGTGTCGTCCGAGGTATCC 59.268 63.158 0.00 0.00 0.00 2.59
2381 10335 1.033746 GGTGTCGTCCGAGGTATCCA 61.034 60.000 0.00 0.00 0.00 3.41
2382 10336 0.381089 GTGTCGTCCGAGGTATCCAG 59.619 60.000 0.00 0.00 0.00 3.86
2383 10337 1.359475 GTCGTCCGAGGTATCCAGC 59.641 63.158 0.00 0.00 0.00 4.85
2384 10338 1.826921 TCGTCCGAGGTATCCAGCC 60.827 63.158 0.00 0.00 0.00 4.85
2385 10339 2.125326 CGTCCGAGGTATCCAGCCA 61.125 63.158 0.00 0.00 0.00 4.75
2386 10340 1.742768 GTCCGAGGTATCCAGCCAG 59.257 63.158 0.00 0.00 0.00 4.85
2387 10341 0.755698 GTCCGAGGTATCCAGCCAGA 60.756 60.000 0.00 0.00 0.00 3.86
2388 10342 0.188587 TCCGAGGTATCCAGCCAGAT 59.811 55.000 0.00 0.00 0.00 2.90
2389 10343 0.319728 CCGAGGTATCCAGCCAGATG 59.680 60.000 0.00 0.00 0.00 2.90
2390 10344 1.043816 CGAGGTATCCAGCCAGATGT 58.956 55.000 0.00 0.00 0.00 3.06
2391 10345 1.000283 CGAGGTATCCAGCCAGATGTC 60.000 57.143 0.00 0.00 0.00 3.06
2392 10346 1.346068 GAGGTATCCAGCCAGATGTCC 59.654 57.143 0.00 0.45 0.00 4.02
2393 10347 1.131638 GGTATCCAGCCAGATGTCCA 58.868 55.000 0.00 0.00 0.00 4.02
2394 10348 1.490490 GGTATCCAGCCAGATGTCCAA 59.510 52.381 0.00 0.00 0.00 3.53
2395 10349 2.565841 GTATCCAGCCAGATGTCCAAC 58.434 52.381 0.00 0.00 0.00 3.77
2396 10350 0.257039 ATCCAGCCAGATGTCCAACC 59.743 55.000 0.00 0.00 0.00 3.77
2397 10351 1.133181 TCCAGCCAGATGTCCAACCA 61.133 55.000 0.00 0.00 0.00 3.67
2398 10352 0.962356 CCAGCCAGATGTCCAACCAC 60.962 60.000 0.00 0.00 0.00 4.16
2399 10353 0.962356 CAGCCAGATGTCCAACCACC 60.962 60.000 0.00 0.00 0.00 4.61
2400 10354 2.040544 GCCAGATGTCCAACCACCG 61.041 63.158 0.00 0.00 0.00 4.94
2401 10355 1.676968 CCAGATGTCCAACCACCGA 59.323 57.895 0.00 0.00 0.00 4.69
2402 10356 0.253044 CCAGATGTCCAACCACCGAT 59.747 55.000 0.00 0.00 0.00 4.18
2403 10357 1.484653 CCAGATGTCCAACCACCGATA 59.515 52.381 0.00 0.00 0.00 2.92
2404 10358 2.093181 CCAGATGTCCAACCACCGATAA 60.093 50.000 0.00 0.00 0.00 1.75
2405 10359 3.433598 CCAGATGTCCAACCACCGATAAT 60.434 47.826 0.00 0.00 0.00 1.28
2406 10360 3.809832 CAGATGTCCAACCACCGATAATC 59.190 47.826 0.00 0.00 0.00 1.75
2407 10361 3.454447 AGATGTCCAACCACCGATAATCA 59.546 43.478 0.00 0.00 0.00 2.57
2408 10362 3.924114 TGTCCAACCACCGATAATCAT 57.076 42.857 0.00 0.00 0.00 2.45
2409 10363 3.804036 TGTCCAACCACCGATAATCATC 58.196 45.455 0.00 0.00 0.00 2.92
2410 10364 3.139077 GTCCAACCACCGATAATCATCC 58.861 50.000 0.00 0.00 0.00 3.51
2411 10365 2.143122 CCAACCACCGATAATCATCCG 58.857 52.381 0.00 0.00 0.00 4.18
2412 10366 2.143122 CAACCACCGATAATCATCCGG 58.857 52.381 0.00 0.00 33.62 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 118 1.300971 ATACAGCACAGCAAGGCACG 61.301 55.000 0.00 0.00 0.00 5.34
124 128 5.125356 CAGGGAAATGTATGATACAGCACA 58.875 41.667 11.32 0.00 42.77 4.57
125 129 5.126067 ACAGGGAAATGTATGATACAGCAC 58.874 41.667 11.32 4.53 42.77 4.40
126 130 5.372343 ACAGGGAAATGTATGATACAGCA 57.628 39.130 11.32 0.00 42.77 4.41
127 131 6.699575 AAACAGGGAAATGTATGATACAGC 57.300 37.500 11.32 3.36 42.77 4.40
215 219 0.099968 GACCATCGATTCGACCGACA 59.900 55.000 11.56 0.00 39.18 4.35
216 220 0.381089 AGACCATCGATTCGACCGAC 59.619 55.000 11.56 4.91 39.18 4.79
217 221 1.100510 AAGACCATCGATTCGACCGA 58.899 50.000 11.56 10.88 39.18 4.69
218 222 1.922570 AAAGACCATCGATTCGACCG 58.077 50.000 11.56 6.78 39.18 4.79
219 223 3.307242 CAGAAAAGACCATCGATTCGACC 59.693 47.826 11.56 1.55 39.18 4.79
323 329 7.201767 GCCCATATCACTTATCAGGCAATATTC 60.202 40.741 0.00 0.00 37.00 1.75
345 351 3.040206 GCTCTGCTCTCCATGCCCA 62.040 63.158 0.00 0.00 0.00 5.36
357 363 1.200020 AGTTTGGCGTTATTGCTCTGC 59.800 47.619 0.00 0.00 34.52 4.26
366 372 0.860533 GTACGTGCAGTTTGGCGTTA 59.139 50.000 0.00 0.00 38.56 3.18
410 417 5.059833 TGAATTGGGGTTGTTTAATTGCAC 58.940 37.500 0.00 0.00 0.00 4.57
476 483 4.513198 TTGTCCGGAAACCATTTGAATC 57.487 40.909 5.23 0.00 0.00 2.52
510 517 4.315628 CGTAATATATTTTGCTCGCGCTC 58.684 43.478 5.56 0.00 36.97 5.03
511 518 3.423123 GCGTAATATATTTTGCTCGCGCT 60.423 43.478 5.56 0.00 38.39 5.92
517 524 6.427150 CAGGAAACGCGTAATATATTTTGCT 58.573 36.000 14.46 8.34 0.00 3.91
520 527 6.056884 TCCCAGGAAACGCGTAATATATTTT 58.943 36.000 14.46 0.00 0.00 1.82
567 577 5.688807 AGCAAGTAATAATGGACATCTGCT 58.311 37.500 0.00 0.00 0.00 4.24
753 764 3.838903 CCAAGGGTCTAACCTGAAGTACT 59.161 47.826 0.00 0.00 40.87 2.73
833 8699 2.821969 CTGAAGAACCATTTGACCCTGG 59.178 50.000 0.00 0.00 38.55 4.45
856 8724 3.126831 CTGTGGACTCTGTTGTCTGAAC 58.873 50.000 0.00 0.00 37.16 3.18
857 8725 2.483714 GCTGTGGACTCTGTTGTCTGAA 60.484 50.000 0.00 0.00 37.16 3.02
858 8726 1.069204 GCTGTGGACTCTGTTGTCTGA 59.931 52.381 0.00 0.00 37.16 3.27
859 8727 1.069823 AGCTGTGGACTCTGTTGTCTG 59.930 52.381 0.00 0.00 37.16 3.51
860 8728 1.069823 CAGCTGTGGACTCTGTTGTCT 59.930 52.381 5.25 0.00 37.16 3.41
861 8729 1.506493 CAGCTGTGGACTCTGTTGTC 58.494 55.000 5.25 0.00 36.31 3.18
862 8730 0.533755 GCAGCTGTGGACTCTGTTGT 60.534 55.000 16.64 0.00 0.00 3.32
941 8815 3.991536 GAGCTGGGAGACGAACGCC 62.992 68.421 0.00 0.00 37.74 5.68
960 8835 3.181465 TGTGTGAGGACCTTGAAAGAGTC 60.181 47.826 0.00 0.00 0.00 3.36
977 8852 4.395231 TCTTCTACGTCCAGTATCTGTGTG 59.605 45.833 0.00 0.00 34.34 3.82
1113 8988 3.191162 TGCAATCACTTACATTGAGCACC 59.809 43.478 0.00 0.00 33.69 5.01
1172 9047 0.942962 CAGAAGCTCGGATCATTGGC 59.057 55.000 0.00 0.00 0.00 4.52
1173 9048 0.942962 GCAGAAGCTCGGATCATTGG 59.057 55.000 0.00 0.00 37.91 3.16
1208 9084 8.873830 CGATGTAGAAATTTACACAAGTCAGAT 58.126 33.333 8.05 0.00 36.45 2.90
1212 9088 7.360575 ACCGATGTAGAAATTTACACAAGTC 57.639 36.000 8.05 3.12 36.45 3.01
1289 9167 0.464452 CTACCCCTTCACCCGATGAC 59.536 60.000 0.00 0.00 36.92 3.06
1295 9227 0.691413 CCTCCTCTACCCCTTCACCC 60.691 65.000 0.00 0.00 0.00 4.61
1303 9235 2.183679 CAGATATGGCCTCCTCTACCC 58.816 57.143 3.32 0.00 0.00 3.69
1307 9239 3.238597 GTCTTCAGATATGGCCTCCTCT 58.761 50.000 3.32 0.00 0.00 3.69
1319 9251 2.909006 TGCCCTCTCTTTGTCTTCAGAT 59.091 45.455 0.00 0.00 0.00 2.90
1328 9260 2.679716 CCCCCTGCCCTCTCTTTG 59.320 66.667 0.00 0.00 0.00 2.77
1413 9345 1.839994 AGAATGCAGGGAGAAATCCGA 59.160 47.619 0.00 0.00 0.00 4.55
1415 9347 2.092212 TGGAGAATGCAGGGAGAAATCC 60.092 50.000 0.00 0.00 0.00 3.01
1445 9377 9.442047 GATCATCTAAAGAAGAAGGTGAAAGAA 57.558 33.333 0.00 0.00 37.89 2.52
1446 9378 8.597167 TGATCATCTAAAGAAGAAGGTGAAAGA 58.403 33.333 0.00 0.00 37.89 2.52
1667 9618 0.316204 CTGGCCAGAAAAACTGCAGG 59.684 55.000 29.88 0.00 44.52 4.85
1755 9709 0.588252 CCGTCCTGAGCAAAACTGTG 59.412 55.000 0.00 0.00 0.00 3.66
1801 9755 1.019673 CCATTTCGATGTCCCTGCAG 58.980 55.000 6.78 6.78 0.00 4.41
1904 9858 1.001706 GTGCCCGGTTTTCAACTCTTC 60.002 52.381 0.00 0.00 0.00 2.87
1941 9895 6.881065 AGATGCTCTACTTCAATTTTGCTGTA 59.119 34.615 0.00 0.00 0.00 2.74
1956 9910 1.804372 CGCCTGTTGGAGATGCTCTAC 60.804 57.143 0.00 0.00 34.95 2.59
1957 9911 0.461548 CGCCTGTTGGAGATGCTCTA 59.538 55.000 0.00 0.00 34.95 2.43
1958 9912 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
1959 9913 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
1960 9914 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
1961 9915 3.512516 GGCGCCTGTTGGAGATGC 61.513 66.667 22.15 0.00 34.95 3.91
1962 9916 3.197790 CGGCGCCTGTTGGAGATG 61.198 66.667 26.68 0.00 34.95 2.90
1963 9917 4.473520 CCGGCGCCTGTTGGAGAT 62.474 66.667 26.68 0.00 34.95 2.75
1995 9949 0.242286 TGCGCGGCATATGTGTTTTT 59.758 45.000 8.83 0.00 31.71 1.94
1996 9950 0.455972 GTGCGCGGCATATGTGTTTT 60.456 50.000 8.83 0.00 41.91 2.43
1997 9951 1.136565 GTGCGCGGCATATGTGTTT 59.863 52.632 8.83 0.00 41.91 2.83
1998 9952 2.791256 GTGCGCGGCATATGTGTT 59.209 55.556 8.83 0.00 41.91 3.32
1999 9953 3.563088 CGTGCGCGGCATATGTGT 61.563 61.111 12.87 0.00 41.91 3.72
2000 9954 4.943591 GCGTGCGCGGCATATGTG 62.944 66.667 22.73 0.00 41.91 3.21
2012 9966 3.737172 AAACCAGCCGATGCGTGC 61.737 61.111 0.00 0.00 44.33 5.34
2013 9967 2.176546 CAAACCAGCCGATGCGTG 59.823 61.111 0.00 0.00 44.33 5.34
2014 9968 3.055719 CCAAACCAGCCGATGCGT 61.056 61.111 0.00 0.00 44.33 5.24
2015 9969 4.481112 GCCAAACCAGCCGATGCG 62.481 66.667 0.00 0.00 44.33 4.73
2016 9970 4.481112 CGCCAAACCAGCCGATGC 62.481 66.667 0.00 0.00 37.95 3.91
2017 9971 4.481112 GCGCCAAACCAGCCGATG 62.481 66.667 0.00 0.00 0.00 3.84
2050 10004 4.819761 TTAGCGCGGCTGCTGGAG 62.820 66.667 22.96 0.14 46.70 3.86
2051 10005 3.892740 TTTTAGCGCGGCTGCTGGA 62.893 57.895 22.96 12.50 46.70 3.86
2052 10006 2.764314 ATTTTAGCGCGGCTGCTGG 61.764 57.895 22.96 1.40 46.70 4.85
2053 10007 1.584483 CATTTTAGCGCGGCTGCTG 60.584 57.895 22.96 10.42 46.70 4.41
2055 10009 2.951227 GCATTTTAGCGCGGCTGC 60.951 61.111 8.83 7.70 40.10 5.25
2056 10010 1.584483 CTGCATTTTAGCGCGGCTG 60.584 57.895 8.83 0.53 40.10 4.85
2057 10011 2.793946 CTGCATTTTAGCGCGGCT 59.206 55.556 8.83 8.38 43.41 5.52
2063 10017 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
2064 10018 3.307262 GCGCGCGCTGCATTTTAG 61.307 61.111 44.38 15.91 46.97 1.85
2094 10048 3.248171 CCTAGAACGAGCGTGCGC 61.248 66.667 8.67 8.67 42.33 6.09
2095 10049 2.319011 TAGCCTAGAACGAGCGTGCG 62.319 60.000 0.00 0.00 37.29 5.34
2096 10050 0.030908 ATAGCCTAGAACGAGCGTGC 59.969 55.000 0.00 0.00 0.00 5.34
2097 10051 2.120232 CAATAGCCTAGAACGAGCGTG 58.880 52.381 0.00 0.00 0.00 5.34
2098 10052 1.067212 CCAATAGCCTAGAACGAGCGT 59.933 52.381 0.00 0.00 0.00 5.07
2099 10053 1.337071 TCCAATAGCCTAGAACGAGCG 59.663 52.381 0.00 0.00 0.00 5.03
2100 10054 3.454371 TTCCAATAGCCTAGAACGAGC 57.546 47.619 0.00 0.00 0.00 5.03
2101 10055 7.434492 TCTATTTTCCAATAGCCTAGAACGAG 58.566 38.462 0.00 0.00 41.27 4.18
2102 10056 7.356089 TCTATTTTCCAATAGCCTAGAACGA 57.644 36.000 0.00 0.00 41.27 3.85
2103 10057 9.360093 CTATCTATTTTCCAATAGCCTAGAACG 57.640 37.037 0.00 0.00 41.27 3.95
2108 10062 9.672673 GCAATCTATCTATTTTCCAATAGCCTA 57.327 33.333 0.00 0.00 41.27 3.93
2109 10063 8.166061 TGCAATCTATCTATTTTCCAATAGCCT 58.834 33.333 0.00 0.00 41.27 4.58
2110 10064 8.340618 TGCAATCTATCTATTTTCCAATAGCC 57.659 34.615 0.00 0.00 41.27 3.93
2144 10098 9.537192 TCCGATGTAAAATATCTTTGTATCGTT 57.463 29.630 0.00 0.00 34.22 3.85
2145 10099 9.537192 TTCCGATGTAAAATATCTTTGTATCGT 57.463 29.630 0.00 0.00 34.22 3.73
2157 10111 9.114952 TGCAATCTATGTTTCCGATGTAAAATA 57.885 29.630 0.00 0.00 0.00 1.40
2158 10112 7.995289 TGCAATCTATGTTTCCGATGTAAAAT 58.005 30.769 0.00 0.00 0.00 1.82
2159 10113 7.384439 TGCAATCTATGTTTCCGATGTAAAA 57.616 32.000 0.00 0.00 0.00 1.52
2160 10114 6.993786 TGCAATCTATGTTTCCGATGTAAA 57.006 33.333 0.00 0.00 0.00 2.01
2161 10115 8.669946 TTATGCAATCTATGTTTCCGATGTAA 57.330 30.769 0.00 0.00 0.00 2.41
2162 10116 8.846943 ATTATGCAATCTATGTTTCCGATGTA 57.153 30.769 0.00 0.00 0.00 2.29
2163 10117 7.750229 ATTATGCAATCTATGTTTCCGATGT 57.250 32.000 0.00 0.00 0.00 3.06
2180 10134 9.545105 CCCAAATTGAGCTTTTATTATTATGCA 57.455 29.630 0.00 0.00 0.00 3.96
2181 10135 9.546428 ACCCAAATTGAGCTTTTATTATTATGC 57.454 29.630 0.00 0.00 0.00 3.14
2185 10139 9.034800 TCTGACCCAAATTGAGCTTTTATTATT 57.965 29.630 0.00 0.00 0.00 1.40
2186 10140 8.470002 GTCTGACCCAAATTGAGCTTTTATTAT 58.530 33.333 0.00 0.00 0.00 1.28
2187 10141 7.093945 GGTCTGACCCAAATTGAGCTTTTATTA 60.094 37.037 16.14 0.00 30.04 0.98
2188 10142 6.295292 GGTCTGACCCAAATTGAGCTTTTATT 60.295 38.462 16.14 0.00 30.04 1.40
2189 10143 5.185828 GGTCTGACCCAAATTGAGCTTTTAT 59.814 40.000 16.14 0.00 30.04 1.40
2190 10144 4.522789 GGTCTGACCCAAATTGAGCTTTTA 59.477 41.667 16.14 0.00 30.04 1.52
2191 10145 3.321968 GGTCTGACCCAAATTGAGCTTTT 59.678 43.478 16.14 0.00 30.04 2.27
2192 10146 2.893489 GGTCTGACCCAAATTGAGCTTT 59.107 45.455 16.14 0.00 30.04 3.51
2193 10147 2.108952 AGGTCTGACCCAAATTGAGCTT 59.891 45.455 22.81 0.00 39.75 3.74
2194 10148 1.707427 AGGTCTGACCCAAATTGAGCT 59.293 47.619 22.81 0.00 39.75 4.09
2195 10149 2.206576 AGGTCTGACCCAAATTGAGC 57.793 50.000 22.81 0.00 39.75 4.26
2196 10150 3.754965 TCAAGGTCTGACCCAAATTGAG 58.245 45.455 22.81 4.93 39.75 3.02
2197 10151 3.874383 TCAAGGTCTGACCCAAATTGA 57.126 42.857 22.81 20.87 39.75 2.57
2198 10152 3.367703 GCATCAAGGTCTGACCCAAATTG 60.368 47.826 22.81 19.09 39.75 2.32
2199 10153 2.827921 GCATCAAGGTCTGACCCAAATT 59.172 45.455 22.81 8.17 39.75 1.82
2200 10154 2.042162 AGCATCAAGGTCTGACCCAAAT 59.958 45.455 22.81 10.87 39.75 2.32
2201 10155 1.425066 AGCATCAAGGTCTGACCCAAA 59.575 47.619 22.81 8.99 39.75 3.28
2202 10156 1.067295 AGCATCAAGGTCTGACCCAA 58.933 50.000 22.81 9.35 39.75 4.12
2203 10157 0.325933 CAGCATCAAGGTCTGACCCA 59.674 55.000 22.81 8.14 39.75 4.51
2204 10158 1.028868 GCAGCATCAAGGTCTGACCC 61.029 60.000 22.81 6.81 39.75 4.46
2205 10159 1.364626 CGCAGCATCAAGGTCTGACC 61.365 60.000 19.20 19.20 36.69 4.02
2206 10160 0.390340 TCGCAGCATCAAGGTCTGAC 60.390 55.000 0.00 0.00 36.69 3.51
2207 10161 0.390340 GTCGCAGCATCAAGGTCTGA 60.390 55.000 0.00 0.00 38.81 3.27
2208 10162 0.390866 AGTCGCAGCATCAAGGTCTG 60.391 55.000 0.00 0.00 0.00 3.51
2209 10163 0.108424 GAGTCGCAGCATCAAGGTCT 60.108 55.000 0.00 0.00 0.00 3.85
2210 10164 0.390340 TGAGTCGCAGCATCAAGGTC 60.390 55.000 0.00 0.00 0.00 3.85
2211 10165 0.390866 CTGAGTCGCAGCATCAAGGT 60.391 55.000 0.00 0.00 37.90 3.50
2212 10166 1.088340 CCTGAGTCGCAGCATCAAGG 61.088 60.000 0.00 0.00 43.50 3.61
2213 10167 1.703438 GCCTGAGTCGCAGCATCAAG 61.703 60.000 0.00 0.00 43.50 3.02
2214 10168 1.742880 GCCTGAGTCGCAGCATCAA 60.743 57.895 0.00 0.00 43.50 2.57
2215 10169 2.125391 GCCTGAGTCGCAGCATCA 60.125 61.111 0.00 0.00 43.50 3.07
2216 10170 1.094073 AATGCCTGAGTCGCAGCATC 61.094 55.000 12.94 0.00 43.50 3.91
2217 10171 0.178767 TAATGCCTGAGTCGCAGCAT 59.821 50.000 8.15 8.15 43.50 3.79
2218 10172 0.740868 GTAATGCCTGAGTCGCAGCA 60.741 55.000 0.00 4.28 43.50 4.41
2219 10173 0.460987 AGTAATGCCTGAGTCGCAGC 60.461 55.000 0.00 0.00 43.50 5.25
2220 10174 1.134995 TGAGTAATGCCTGAGTCGCAG 60.135 52.381 0.00 0.00 44.49 5.18
2221 10175 0.894835 TGAGTAATGCCTGAGTCGCA 59.105 50.000 0.00 0.00 41.28 5.10
2222 10176 2.010145 TTGAGTAATGCCTGAGTCGC 57.990 50.000 0.00 0.00 0.00 5.19
2223 10177 5.188327 TCTATTGAGTAATGCCTGAGTCG 57.812 43.478 0.00 0.00 0.00 4.18
2224 10178 5.069781 ACCTCTATTGAGTAATGCCTGAGTC 59.930 44.000 3.47 0.00 38.61 3.36
2225 10179 4.965532 ACCTCTATTGAGTAATGCCTGAGT 59.034 41.667 3.47 0.00 38.61 3.41
2226 10180 5.295950 CACCTCTATTGAGTAATGCCTGAG 58.704 45.833 3.47 0.00 38.61 3.35
2227 10181 4.443457 GCACCTCTATTGAGTAATGCCTGA 60.443 45.833 11.60 0.00 38.61 3.86
2228 10182 3.812053 GCACCTCTATTGAGTAATGCCTG 59.188 47.826 11.60 0.00 38.61 4.85
2229 10183 3.455910 TGCACCTCTATTGAGTAATGCCT 59.544 43.478 16.72 0.00 39.22 4.75
2230 10184 3.808728 TGCACCTCTATTGAGTAATGCC 58.191 45.455 16.72 5.82 39.22 4.40
2231 10185 4.274459 CCTTGCACCTCTATTGAGTAATGC 59.726 45.833 14.22 14.22 39.82 3.56
2232 10186 4.274459 GCCTTGCACCTCTATTGAGTAATG 59.726 45.833 3.47 0.71 38.61 1.90
2233 10187 4.164988 AGCCTTGCACCTCTATTGAGTAAT 59.835 41.667 3.47 0.00 38.61 1.89
2234 10188 3.519510 AGCCTTGCACCTCTATTGAGTAA 59.480 43.478 3.47 0.00 38.61 2.24
2235 10189 3.107601 AGCCTTGCACCTCTATTGAGTA 58.892 45.455 3.47 0.00 38.61 2.59
2236 10190 1.912043 AGCCTTGCACCTCTATTGAGT 59.088 47.619 3.47 0.00 38.61 3.41
2237 10191 2.706339 AGCCTTGCACCTCTATTGAG 57.294 50.000 0.00 0.00 39.92 3.02
2238 10192 3.263170 TGTAAGCCTTGCACCTCTATTGA 59.737 43.478 0.00 0.00 0.00 2.57
2239 10193 3.609853 TGTAAGCCTTGCACCTCTATTG 58.390 45.455 0.00 0.00 0.00 1.90
2240 10194 3.519510 TCTGTAAGCCTTGCACCTCTATT 59.480 43.478 0.00 0.00 0.00 1.73
2241 10195 3.107601 TCTGTAAGCCTTGCACCTCTAT 58.892 45.455 0.00 0.00 0.00 1.98
2242 10196 2.536066 TCTGTAAGCCTTGCACCTCTA 58.464 47.619 0.00 0.00 0.00 2.43
2243 10197 1.352083 TCTGTAAGCCTTGCACCTCT 58.648 50.000 0.00 0.00 0.00 3.69
2244 10198 2.079925 CTTCTGTAAGCCTTGCACCTC 58.920 52.381 0.00 0.00 0.00 3.85
2245 10199 1.421646 ACTTCTGTAAGCCTTGCACCT 59.578 47.619 0.00 0.00 36.05 4.00
2246 10200 1.537202 CACTTCTGTAAGCCTTGCACC 59.463 52.381 0.00 0.00 36.05 5.01
2247 10201 1.068954 GCACTTCTGTAAGCCTTGCAC 60.069 52.381 0.00 0.00 34.19 4.57
2248 10202 1.238439 GCACTTCTGTAAGCCTTGCA 58.762 50.000 0.00 0.00 34.19 4.08
2249 10203 0.523519 GGCACTTCTGTAAGCCTTGC 59.476 55.000 0.00 0.00 43.70 4.01
2250 10204 1.168714 GGGCACTTCTGTAAGCCTTG 58.831 55.000 0.00 0.00 46.23 3.61
2251 10205 0.771127 TGGGCACTTCTGTAAGCCTT 59.229 50.000 0.00 0.00 46.23 4.35
2252 10206 0.771127 TTGGGCACTTCTGTAAGCCT 59.229 50.000 0.00 0.00 46.23 4.58
2253 10207 1.269723 GTTTGGGCACTTCTGTAAGCC 59.730 52.381 0.00 0.00 46.28 4.35
2254 10208 1.953686 TGTTTGGGCACTTCTGTAAGC 59.046 47.619 0.00 0.00 36.05 3.09
2255 10209 3.243401 GGTTGTTTGGGCACTTCTGTAAG 60.243 47.826 0.00 0.00 38.77 2.34
2256 10210 2.691011 GGTTGTTTGGGCACTTCTGTAA 59.309 45.455 0.00 0.00 0.00 2.41
2257 10211 2.303175 GGTTGTTTGGGCACTTCTGTA 58.697 47.619 0.00 0.00 0.00 2.74
2258 10212 1.111277 GGTTGTTTGGGCACTTCTGT 58.889 50.000 0.00 0.00 0.00 3.41
2259 10213 1.110442 TGGTTGTTTGGGCACTTCTG 58.890 50.000 0.00 0.00 0.00 3.02
2260 10214 1.111277 GTGGTTGTTTGGGCACTTCT 58.889 50.000 0.00 0.00 0.00 2.85
2261 10215 0.248866 CGTGGTTGTTTGGGCACTTC 60.249 55.000 0.00 0.00 0.00 3.01
2262 10216 0.681564 TCGTGGTTGTTTGGGCACTT 60.682 50.000 0.00 0.00 0.00 3.16
2263 10217 1.077357 TCGTGGTTGTTTGGGCACT 60.077 52.632 0.00 0.00 0.00 4.40
2264 10218 1.065109 GTCGTGGTTGTTTGGGCAC 59.935 57.895 0.00 0.00 0.00 5.01
2265 10219 0.965866 TTGTCGTGGTTGTTTGGGCA 60.966 50.000 0.00 0.00 0.00 5.36
2266 10220 0.173708 TTTGTCGTGGTTGTTTGGGC 59.826 50.000 0.00 0.00 0.00 5.36
2267 10221 1.795889 CGTTTGTCGTGGTTGTTTGGG 60.796 52.381 0.00 0.00 34.52 4.12
2268 10222 1.130749 TCGTTTGTCGTGGTTGTTTGG 59.869 47.619 0.00 0.00 40.80 3.28
2269 10223 2.529136 TCGTTTGTCGTGGTTGTTTG 57.471 45.000 0.00 0.00 40.80 2.93
2270 10224 4.879104 TTATCGTTTGTCGTGGTTGTTT 57.121 36.364 0.00 0.00 40.80 2.83
2271 10225 4.879104 TTTATCGTTTGTCGTGGTTGTT 57.121 36.364 0.00 0.00 40.80 2.83
2272 10226 4.094590 TGTTTTATCGTTTGTCGTGGTTGT 59.905 37.500 0.00 0.00 40.80 3.32
2273 10227 4.435231 GTGTTTTATCGTTTGTCGTGGTTG 59.565 41.667 0.00 0.00 40.80 3.77
2274 10228 4.590226 GTGTTTTATCGTTTGTCGTGGTT 58.410 39.130 0.00 0.00 40.80 3.67
2275 10229 3.302610 CGTGTTTTATCGTTTGTCGTGGT 60.303 43.478 0.00 0.00 40.80 4.16
2276 10230 3.060406 TCGTGTTTTATCGTTTGTCGTGG 60.060 43.478 0.00 0.00 40.80 4.94
2277 10231 4.085466 TCTCGTGTTTTATCGTTTGTCGTG 60.085 41.667 0.00 0.00 40.80 4.35
2278 10232 4.043750 TCTCGTGTTTTATCGTTTGTCGT 58.956 39.130 0.00 0.00 40.80 4.34
2279 10233 4.618338 TCTCGTGTTTTATCGTTTGTCG 57.382 40.909 0.00 0.00 41.41 4.35
2280 10234 7.502177 TCTATCTCGTGTTTTATCGTTTGTC 57.498 36.000 0.00 0.00 0.00 3.18
2281 10235 8.380644 CAATCTATCTCGTGTTTTATCGTTTGT 58.619 33.333 0.00 0.00 0.00 2.83
2282 10236 7.370836 GCAATCTATCTCGTGTTTTATCGTTTG 59.629 37.037 0.00 0.00 0.00 2.93
2283 10237 7.064134 TGCAATCTATCTCGTGTTTTATCGTTT 59.936 33.333 0.00 0.00 0.00 3.60
2284 10238 6.533723 TGCAATCTATCTCGTGTTTTATCGTT 59.466 34.615 0.00 0.00 0.00 3.85
2285 10239 6.040247 TGCAATCTATCTCGTGTTTTATCGT 58.960 36.000 0.00 0.00 0.00 3.73
2286 10240 6.510746 TGCAATCTATCTCGTGTTTTATCG 57.489 37.500 0.00 0.00 0.00 2.92
2315 10269 9.817809 TGATGATAGCGACTTAGACTAATTTTT 57.182 29.630 0.00 0.00 0.00 1.94
2316 10270 9.250624 GTGATGATAGCGACTTAGACTAATTTT 57.749 33.333 0.00 0.00 0.00 1.82
2317 10271 8.634444 AGTGATGATAGCGACTTAGACTAATTT 58.366 33.333 0.00 0.00 0.00 1.82
2318 10272 8.172352 AGTGATGATAGCGACTTAGACTAATT 57.828 34.615 0.00 0.00 0.00 1.40
2319 10273 7.753309 AGTGATGATAGCGACTTAGACTAAT 57.247 36.000 0.00 0.00 0.00 1.73
2320 10274 8.850007 ATAGTGATGATAGCGACTTAGACTAA 57.150 34.615 0.00 0.00 0.00 2.24
2321 10275 7.275999 CGATAGTGATGATAGCGACTTAGACTA 59.724 40.741 0.00 0.00 34.10 2.59
2322 10276 6.091577 CGATAGTGATGATAGCGACTTAGACT 59.908 42.308 0.00 0.00 34.10 3.24
2323 10277 6.244999 CGATAGTGATGATAGCGACTTAGAC 58.755 44.000 0.00 0.00 34.10 2.59
2324 10278 6.410243 CGATAGTGATGATAGCGACTTAGA 57.590 41.667 0.00 0.00 34.10 2.10
2337 10291 6.156533 CCGAGGAGGATGACGATAGTGATG 62.157 54.167 0.00 0.00 45.08 3.07
2342 10296 0.523966 GCCGAGGAGGATGACGATAG 59.476 60.000 0.00 0.00 45.00 2.08
2343 10297 1.235281 CGCCGAGGAGGATGACGATA 61.235 60.000 0.00 0.00 45.00 2.92
2344 10298 2.556459 CGCCGAGGAGGATGACGAT 61.556 63.158 0.00 0.00 45.00 3.73
2345 10299 3.209812 CGCCGAGGAGGATGACGA 61.210 66.667 0.00 0.00 45.00 4.20
2346 10300 4.271816 CCGCCGAGGAGGATGACG 62.272 72.222 5.98 0.00 45.00 4.35
2347 10301 3.148279 ACCGCCGAGGAGGATGAC 61.148 66.667 18.75 0.00 45.00 3.06
2348 10302 3.147595 CACCGCCGAGGAGGATGA 61.148 66.667 18.75 0.00 45.00 2.92
2349 10303 3.432051 GACACCGCCGAGGAGGATG 62.432 68.421 18.75 14.07 45.00 3.51
2350 10304 3.148279 GACACCGCCGAGGAGGAT 61.148 66.667 18.75 6.06 45.00 3.24
2353 10307 4.477975 GACGACACCGCCGAGGAG 62.478 72.222 3.89 0.00 45.00 3.69
2362 10316 1.033746 TGGATACCTCGGACGACACC 61.034 60.000 0.00 0.00 0.00 4.16
2363 10317 0.381089 CTGGATACCTCGGACGACAC 59.619 60.000 0.00 0.00 0.00 3.67
2364 10318 1.381928 GCTGGATACCTCGGACGACA 61.382 60.000 0.00 0.00 0.00 4.35
2365 10319 1.359475 GCTGGATACCTCGGACGAC 59.641 63.158 0.00 0.00 0.00 4.34
2366 10320 1.826921 GGCTGGATACCTCGGACGA 60.827 63.158 0.00 0.00 0.00 4.20
2367 10321 2.076622 CTGGCTGGATACCTCGGACG 62.077 65.000 0.00 0.00 0.00 4.79
2368 10322 0.755698 TCTGGCTGGATACCTCGGAC 60.756 60.000 0.00 0.00 0.00 4.79
2369 10323 0.188587 ATCTGGCTGGATACCTCGGA 59.811 55.000 0.00 0.00 0.00 4.55
2370 10324 0.319728 CATCTGGCTGGATACCTCGG 59.680 60.000 0.00 0.00 0.00 4.63
2371 10325 1.000283 GACATCTGGCTGGATACCTCG 60.000 57.143 0.00 0.00 0.00 4.63
2372 10326 1.346068 GGACATCTGGCTGGATACCTC 59.654 57.143 0.00 0.00 0.00 3.85
2373 10327 1.344393 TGGACATCTGGCTGGATACCT 60.344 52.381 0.00 0.00 0.00 3.08
2374 10328 1.131638 TGGACATCTGGCTGGATACC 58.868 55.000 0.00 0.00 0.00 2.73
2375 10329 2.565841 GTTGGACATCTGGCTGGATAC 58.434 52.381 0.00 0.00 0.00 2.24
2376 10330 1.490490 GGTTGGACATCTGGCTGGATA 59.510 52.381 0.00 0.00 0.00 2.59
2377 10331 0.257039 GGTTGGACATCTGGCTGGAT 59.743 55.000 0.00 0.00 0.00 3.41
2378 10332 1.133181 TGGTTGGACATCTGGCTGGA 61.133 55.000 0.00 0.00 0.00 3.86
2379 10333 0.962356 GTGGTTGGACATCTGGCTGG 60.962 60.000 0.00 0.00 0.00 4.85
2380 10334 0.962356 GGTGGTTGGACATCTGGCTG 60.962 60.000 0.00 0.00 0.00 4.85
2381 10335 1.380302 GGTGGTTGGACATCTGGCT 59.620 57.895 0.00 0.00 0.00 4.75
2382 10336 2.040544 CGGTGGTTGGACATCTGGC 61.041 63.158 0.00 0.00 0.00 4.85
2383 10337 0.253044 ATCGGTGGTTGGACATCTGG 59.747 55.000 0.00 0.00 0.00 3.86
2384 10338 2.979814 TATCGGTGGTTGGACATCTG 57.020 50.000 0.00 0.00 0.00 2.90
2385 10339 3.454447 TGATTATCGGTGGTTGGACATCT 59.546 43.478 0.00 0.00 0.00 2.90
2386 10340 3.804036 TGATTATCGGTGGTTGGACATC 58.196 45.455 0.00 0.00 0.00 3.06
2387 10341 3.924114 TGATTATCGGTGGTTGGACAT 57.076 42.857 0.00 0.00 0.00 3.06
2388 10342 3.433031 GGATGATTATCGGTGGTTGGACA 60.433 47.826 0.00 0.00 33.98 4.02
2389 10343 3.139077 GGATGATTATCGGTGGTTGGAC 58.861 50.000 0.00 0.00 33.98 4.02
2390 10344 2.224185 CGGATGATTATCGGTGGTTGGA 60.224 50.000 0.00 0.00 33.98 3.53
2391 10345 2.143122 CGGATGATTATCGGTGGTTGG 58.857 52.381 0.00 0.00 33.98 3.77
2392 10346 2.143122 CCGGATGATTATCGGTGGTTG 58.857 52.381 0.00 0.00 33.98 3.77
2393 10347 2.543777 CCGGATGATTATCGGTGGTT 57.456 50.000 0.00 0.00 33.98 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.