Multiple sequence alignment - TraesCS7A01G142500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G142500 chr7A 100.000 4078 0 0 1 4078 93487200 93491277 0.000000e+00 7531.0
1 TraesCS7A01G142500 chr7A 92.739 303 16 2 190 492 93475021 93475317 2.250000e-117 433.0
2 TraesCS7A01G142500 chr7A 96.216 185 6 1 1 184 93460839 93461023 6.620000e-78 302.0
3 TraesCS7A01G142500 chr7A 95.906 171 7 0 643 813 93475330 93475500 1.120000e-70 278.0
4 TraesCS7A01G142500 chr7A 95.960 99 4 0 536 634 266861204 266861106 1.170000e-35 161.0
5 TraesCS7A01G142500 chr7A 100.000 40 0 0 493 532 93487651 93487690 1.570000e-09 75.0
6 TraesCS7A01G142500 chr7A 100.000 40 0 0 452 491 93487692 93487731 1.570000e-09 75.0
7 TraesCS7A01G142500 chr7A 97.500 40 1 0 493 532 93475277 93475316 7.310000e-08 69.4
8 TraesCS7A01G142500 chr7D 96.862 2581 63 8 635 3202 91809703 91812278 0.000000e+00 4301.0
9 TraesCS7A01G142500 chr7D 82.593 563 84 9 2252 2801 579142646 579143207 6.130000e-133 484.0
10 TraesCS7A01G142500 chr7D 92.667 300 18 3 3483 3778 91812304 91812603 2.910000e-116 429.0
11 TraesCS7A01G142500 chr7D 88.889 324 17 11 1 316 91809281 91809593 8.270000e-102 381.0
12 TraesCS7A01G142500 chr7D 84.064 251 20 8 3839 4078 91812909 91813150 1.480000e-54 224.0
13 TraesCS7A01G142500 chr7D 91.729 133 11 0 360 492 91809570 91809702 6.960000e-43 185.0
14 TraesCS7A01G142500 chr7D 79.537 259 35 10 1632 1878 579142086 579142338 7.010000e-38 169.0
15 TraesCS7A01G142500 chr7B 96.348 2574 74 5 635 3200 42779236 42776675 0.000000e+00 4215.0
16 TraesCS7A01G142500 chr7B 92.282 596 45 1 3484 4078 42776646 42776051 0.000000e+00 845.0
17 TraesCS7A01G142500 chr7B 83.402 482 77 2 2323 2801 643339980 643340461 1.040000e-120 444.0
18 TraesCS7A01G142500 chr7B 85.196 331 21 13 1 316 42779667 42779350 8.510000e-82 315.0
19 TraesCS7A01G142500 chr7B 79.134 254 35 10 1632 1873 643339349 643339596 4.220000e-35 159.0
20 TraesCS7A01G142500 chr5A 83.300 503 80 2 2305 2803 567782323 567782825 1.030000e-125 460.0
21 TraesCS7A01G142500 chr5A 94.774 287 9 2 3204 3484 165330613 165330899 3.740000e-120 442.0
22 TraesCS7A01G142500 chr5A 94.425 287 12 1 3204 3486 540627188 540627474 4.840000e-119 438.0
23 TraesCS7A01G142500 chr5A 76.471 765 122 33 1167 1893 567781225 567781969 3.000000e-96 363.0
24 TraesCS7A01G142500 chr5A 72.467 1046 202 55 1157 2146 567896526 567897541 1.450000e-64 257.0
25 TraesCS7A01G142500 chr5A 95.098 102 4 1 532 633 502603808 502603908 4.220000e-35 159.0
26 TraesCS7A01G142500 chr4A 95.088 285 9 2 3204 3484 441499267 441498984 1.040000e-120 444.0
27 TraesCS7A01G142500 chr4A 95.960 99 4 0 536 634 140107886 140107788 1.170000e-35 161.0
28 TraesCS7A01G142500 chr3D 94.097 288 12 2 3204 3487 81841555 81841269 2.250000e-117 433.0
29 TraesCS7A01G142500 chr3D 79.371 509 91 9 2323 2819 598465199 598464693 3.020000e-91 346.0
30 TraesCS7A01G142500 chr3D 79.958 474 90 3 2323 2792 571706793 571707265 1.090000e-90 344.0
31 TraesCS7A01G142500 chr3A 93.403 288 13 2 3204 3486 196421728 196422014 4.870000e-114 422.0
32 TraesCS7A01G142500 chr3A 92.982 285 17 2 3204 3486 510849213 510848930 2.930000e-111 412.0
33 TraesCS7A01G142500 chr3A 95.192 104 5 0 531 634 697524470 697524367 9.070000e-37 165.0
34 TraesCS7A01G142500 chr3A 95.960 99 4 0 536 634 49923545 49923643 1.170000e-35 161.0
35 TraesCS7A01G142500 chr2D 93.380 287 15 1 3204 3486 194750526 194750240 4.870000e-114 422.0
36 TraesCS7A01G142500 chr2A 93.007 286 14 5 3204 3484 30311653 30311937 2.930000e-111 412.0
37 TraesCS7A01G142500 chr2A 96.154 104 3 1 531 634 41459587 41459689 7.010000e-38 169.0
38 TraesCS7A01G142500 chr2A 93.519 108 6 1 531 638 552529805 552529911 4.220000e-35 159.0
39 TraesCS7A01G142500 chr2A 93.396 106 6 1 531 636 723160593 723160489 5.460000e-34 156.0
40 TraesCS7A01G142500 chr2A 91.892 111 8 1 531 641 59985808 59985699 1.960000e-33 154.0
41 TraesCS7A01G142500 chr1A 92.982 285 16 2 3204 3484 568118346 568118062 2.930000e-111 412.0
42 TraesCS7A01G142500 chr1A 94.444 36 2 0 1663 1698 445503080 445503115 5.690000e-04 56.5
43 TraesCS7A01G142500 chr5D 74.067 1045 187 51 1157 2146 449014967 449015982 6.490000e-93 351.0
44 TraesCS7A01G142500 chr6D 79.290 507 94 7 2323 2819 63716787 63716282 1.090000e-90 344.0
45 TraesCS7A01G142500 chr5B 74.454 779 136 37 1157 1893 549082876 549082119 1.120000e-70 278.0
46 TraesCS7A01G142500 chr6B 72.449 490 111 22 2330 2807 213398917 213399394 7.110000e-28 135.0
47 TraesCS7A01G142500 chr1D 97.368 38 1 0 1256 1293 487351026 487351063 9.460000e-07 65.8
48 TraesCS7A01G142500 chr1D 94.444 36 2 0 1663 1698 345375572 345375607 5.690000e-04 56.5
49 TraesCS7A01G142500 chr3B 94.737 38 2 0 1256 1293 59464143 59464180 4.400000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G142500 chr7A 93487200 93491277 4077 False 2560.333333 7531 100.000000 1 4078 3 chr7A.!!$F3 4077
1 TraesCS7A01G142500 chr7D 91809281 91813150 3869 False 1104.000000 4301 90.842200 1 4078 5 chr7D.!!$F1 4077
2 TraesCS7A01G142500 chr7D 579142086 579143207 1121 False 326.500000 484 81.065000 1632 2801 2 chr7D.!!$F2 1169
3 TraesCS7A01G142500 chr7B 42776051 42779667 3616 True 1791.666667 4215 91.275333 1 4078 3 chr7B.!!$R1 4077
4 TraesCS7A01G142500 chr7B 643339349 643340461 1112 False 301.500000 444 81.268000 1632 2801 2 chr7B.!!$F1 1169
5 TraesCS7A01G142500 chr5A 567781225 567782825 1600 False 411.500000 460 79.885500 1167 2803 2 chr5A.!!$F5 1636
6 TraesCS7A01G142500 chr5A 567896526 567897541 1015 False 257.000000 257 72.467000 1157 2146 1 chr5A.!!$F4 989
7 TraesCS7A01G142500 chr3D 598464693 598465199 506 True 346.000000 346 79.371000 2323 2819 1 chr3D.!!$R2 496
8 TraesCS7A01G142500 chr5D 449014967 449015982 1015 False 351.000000 351 74.067000 1157 2146 1 chr5D.!!$F1 989
9 TraesCS7A01G142500 chr6D 63716282 63716787 505 True 344.000000 344 79.290000 2323 2819 1 chr6D.!!$R1 496
10 TraesCS7A01G142500 chr5B 549082119 549082876 757 True 278.000000 278 74.454000 1157 1893 1 chr5B.!!$R1 736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
589 609 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41 F
619 639 0.110678 TCTCACGTGAGACCTGGTCT 59.889 55.000 37.87 28.70 45.48 3.85 F
698 718 0.960364 TCACGATTGGGCAGGAAAGC 60.960 55.000 0.00 0.00 0.00 3.51 F
1165 1202 1.285950 CTGGTGTTCGACGAGCTCA 59.714 57.895 15.40 9.93 0.00 4.26 F
2757 2901 1.087771 TCATGATGCTGCTGCTCACG 61.088 55.000 17.00 10.21 40.48 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 1990 1.668101 CCTCTGCCGTAGTGTCCTCC 61.668 65.000 0.00 0.0 0.00 4.30 R
2152 2282 2.761767 TGAAGAATGATTCGACGGGGTA 59.238 45.455 0.00 0.0 34.02 3.69 R
2757 2901 2.125350 CAGAAGGCCTGGAGCGTC 60.125 66.667 5.69 0.0 45.17 5.19 R
2860 3010 1.848388 AGATGCAGATCACCCATCCAA 59.152 47.619 13.38 0.0 36.82 3.53 R
3743 3899 0.686224 TTCGACAACCATAACCCCGT 59.314 50.000 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 9.154847 GAACTTCAATCCATAAAATCTTTTGGG 57.845 33.333 0.00 1.02 35.12 4.12
201 217 2.254546 TTGAGACGTCCAATGCACTT 57.745 45.000 13.01 0.00 0.00 3.16
202 218 1.511850 TGAGACGTCCAATGCACTTG 58.488 50.000 13.01 0.00 34.42 3.16
203 219 0.166814 GAGACGTCCAATGCACTTGC 59.833 55.000 13.01 0.00 42.50 4.01
220 236 5.403246 CACTTGCACGTTATCTCTCTACTT 58.597 41.667 0.00 0.00 0.00 2.24
338 354 4.350368 TTTTCCAAAAAGAAGGATGGCC 57.650 40.909 0.00 0.00 33.10 5.36
339 355 1.937191 TCCAAAAAGAAGGATGGCCC 58.063 50.000 0.00 0.00 32.87 5.80
340 356 0.904649 CCAAAAAGAAGGATGGCCCC 59.095 55.000 0.00 0.00 34.66 5.80
341 357 0.532115 CAAAAAGAAGGATGGCCCCG 59.468 55.000 0.00 0.00 34.66 5.73
342 358 0.614697 AAAAAGAAGGATGGCCCCGG 60.615 55.000 0.00 0.00 34.66 5.73
343 359 2.514516 AAAAGAAGGATGGCCCCGGG 62.515 60.000 15.80 15.80 34.66 5.73
353 369 2.833121 GCCCCGGGCCTTTACATG 60.833 66.667 18.83 0.00 44.06 3.21
354 370 2.833121 CCCCGGGCCTTTACATGC 60.833 66.667 17.73 0.00 0.00 4.06
355 371 2.044451 CCCGGGCCTTTACATGCA 60.044 61.111 8.08 0.00 0.00 3.96
356 372 2.120909 CCCGGGCCTTTACATGCAG 61.121 63.158 8.08 0.00 0.00 4.41
357 373 2.774799 CCGGGCCTTTACATGCAGC 61.775 63.158 0.84 0.00 0.00 5.25
358 374 2.774799 CGGGCCTTTACATGCAGCC 61.775 63.158 0.84 2.37 43.09 4.85
359 375 1.682005 GGGCCTTTACATGCAGCCA 60.682 57.895 12.36 0.00 45.72 4.75
360 376 1.044790 GGGCCTTTACATGCAGCCAT 61.045 55.000 12.36 0.00 45.72 4.40
361 377 1.691196 GGCCTTTACATGCAGCCATA 58.309 50.000 6.04 0.00 43.32 2.74
362 378 1.610522 GGCCTTTACATGCAGCCATAG 59.389 52.381 6.04 0.00 43.32 2.23
363 379 2.301346 GCCTTTACATGCAGCCATAGT 58.699 47.619 0.00 0.00 0.00 2.12
364 380 3.476552 GCCTTTACATGCAGCCATAGTA 58.523 45.455 0.00 0.00 0.00 1.82
378 394 6.936900 GCAGCCATAGTATAGGAATTCAAAGA 59.063 38.462 7.93 0.00 0.00 2.52
389 405 8.812513 ATAGGAATTCAAAGAACATGACATCA 57.187 30.769 7.93 0.00 0.00 3.07
398 414 3.686241 AGAACATGACATCACAATCGTGG 59.314 43.478 0.00 0.00 43.79 4.94
429 445 6.378280 CCCTATTCCTATGTTTTGCAACTTCT 59.622 38.462 0.00 0.00 33.58 2.85
459 479 0.926293 TCCAAATAGGCCCCAAGGAG 59.074 55.000 0.00 0.00 37.29 3.69
477 497 2.537143 GAGGGAGGGAGTGTCACTTTA 58.463 52.381 7.00 0.00 24.24 1.85
494 514 7.696992 TCACTTTATGACTTTTATTCCACCC 57.303 36.000 0.00 0.00 29.99 4.61
495 515 7.235079 TCACTTTATGACTTTTATTCCACCCA 58.765 34.615 0.00 0.00 29.99 4.51
496 516 7.726291 TCACTTTATGACTTTTATTCCACCCAA 59.274 33.333 0.00 0.00 29.99 4.12
497 517 8.028938 CACTTTATGACTTTTATTCCACCCAAG 58.971 37.037 0.00 0.00 0.00 3.61
498 518 7.178451 ACTTTATGACTTTTATTCCACCCAAGG 59.822 37.037 0.00 0.00 0.00 3.61
499 519 4.733077 TGACTTTTATTCCACCCAAGGA 57.267 40.909 0.00 0.00 35.41 3.36
500 520 4.662278 TGACTTTTATTCCACCCAAGGAG 58.338 43.478 0.00 0.00 39.25 3.69
501 521 4.017126 GACTTTTATTCCACCCAAGGAGG 58.983 47.826 0.00 0.00 39.25 4.30
510 530 3.732938 CCAAGGAGGGAGGGAGTG 58.267 66.667 0.00 0.00 0.00 3.51
511 531 1.229658 CCAAGGAGGGAGGGAGTGT 60.230 63.158 0.00 0.00 0.00 3.55
512 532 1.268283 CCAAGGAGGGAGGGAGTGTC 61.268 65.000 0.00 0.00 0.00 3.67
513 533 0.545309 CAAGGAGGGAGGGAGTGTCA 60.545 60.000 0.00 0.00 0.00 3.58
514 534 0.545548 AAGGAGGGAGGGAGTGTCAC 60.546 60.000 0.00 0.00 0.00 3.67
515 535 1.079438 GGAGGGAGGGAGTGTCACT 59.921 63.158 4.81 4.81 28.88 3.41
516 536 0.545548 GGAGGGAGGGAGTGTCACTT 60.546 60.000 7.00 0.00 24.24 3.16
517 537 1.353091 GAGGGAGGGAGTGTCACTTT 58.647 55.000 7.00 0.00 24.24 2.66
518 538 2.537143 GAGGGAGGGAGTGTCACTTTA 58.463 52.381 7.00 0.00 24.24 1.85
519 539 3.108376 GAGGGAGGGAGTGTCACTTTAT 58.892 50.000 7.00 0.00 24.24 1.40
520 540 2.840651 AGGGAGGGAGTGTCACTTTATG 59.159 50.000 7.00 0.00 24.24 1.90
521 541 2.838202 GGGAGGGAGTGTCACTTTATGA 59.162 50.000 7.00 0.00 24.24 2.15
545 565 8.802267 TGACTTTTATTCCTGATTTTAAGTGGG 58.198 33.333 0.00 0.00 0.00 4.61
546 566 8.134202 ACTTTTATTCCTGATTTTAAGTGGGG 57.866 34.615 0.00 0.00 0.00 4.96
547 567 7.180229 ACTTTTATTCCTGATTTTAAGTGGGGG 59.820 37.037 0.00 0.00 0.00 5.40
561 581 3.683518 GGGGGTGGGGGATGCTTT 61.684 66.667 0.00 0.00 0.00 3.51
562 582 2.364186 GGGGTGGGGGATGCTTTG 60.364 66.667 0.00 0.00 0.00 2.77
563 583 2.445155 GGGTGGGGGATGCTTTGT 59.555 61.111 0.00 0.00 0.00 2.83
564 584 1.984026 GGGTGGGGGATGCTTTGTG 60.984 63.158 0.00 0.00 0.00 3.33
565 585 1.076549 GGTGGGGGATGCTTTGTGA 59.923 57.895 0.00 0.00 0.00 3.58
566 586 0.324645 GGTGGGGGATGCTTTGTGAT 60.325 55.000 0.00 0.00 0.00 3.06
567 587 1.560505 GTGGGGGATGCTTTGTGATT 58.439 50.000 0.00 0.00 0.00 2.57
568 588 1.901833 GTGGGGGATGCTTTGTGATTT 59.098 47.619 0.00 0.00 0.00 2.17
569 589 3.096092 GTGGGGGATGCTTTGTGATTTA 58.904 45.455 0.00 0.00 0.00 1.40
570 590 3.706086 GTGGGGGATGCTTTGTGATTTAT 59.294 43.478 0.00 0.00 0.00 1.40
571 591 3.705579 TGGGGGATGCTTTGTGATTTATG 59.294 43.478 0.00 0.00 0.00 1.90
572 592 3.960102 GGGGGATGCTTTGTGATTTATGA 59.040 43.478 0.00 0.00 0.00 2.15
573 593 4.405358 GGGGGATGCTTTGTGATTTATGAA 59.595 41.667 0.00 0.00 0.00 2.57
574 594 5.070847 GGGGGATGCTTTGTGATTTATGAAT 59.929 40.000 0.00 0.00 0.00 2.57
575 595 5.987347 GGGGATGCTTTGTGATTTATGAATG 59.013 40.000 0.00 0.00 0.00 2.67
576 596 5.464389 GGGATGCTTTGTGATTTATGAATGC 59.536 40.000 0.00 0.00 0.00 3.56
577 597 5.464389 GGATGCTTTGTGATTTATGAATGCC 59.536 40.000 0.00 0.00 0.00 4.40
578 598 5.402997 TGCTTTGTGATTTATGAATGCCA 57.597 34.783 0.00 0.00 0.00 4.92
579 599 5.170021 TGCTTTGTGATTTATGAATGCCAC 58.830 37.500 0.00 0.00 0.00 5.01
580 600 4.266029 GCTTTGTGATTTATGAATGCCACG 59.734 41.667 0.00 0.00 0.00 4.94
581 601 5.384063 TTTGTGATTTATGAATGCCACGT 57.616 34.783 0.00 0.00 0.00 4.49
582 602 4.354071 TGTGATTTATGAATGCCACGTG 57.646 40.909 9.08 9.08 0.00 4.49
583 603 3.755905 TGTGATTTATGAATGCCACGTGT 59.244 39.130 15.65 0.00 0.00 4.49
584 604 4.142708 TGTGATTTATGAATGCCACGTGTC 60.143 41.667 15.65 0.98 0.00 3.67
585 605 4.006319 TGATTTATGAATGCCACGTGTCA 58.994 39.130 15.65 8.63 0.00 3.58
586 606 4.639755 TGATTTATGAATGCCACGTGTCAT 59.360 37.500 19.43 19.43 35.05 3.06
587 607 4.614555 TTTATGAATGCCACGTGTCATC 57.385 40.909 19.16 11.02 32.99 2.92
588 608 1.382522 ATGAATGCCACGTGTCATCC 58.617 50.000 13.12 0.00 0.00 3.51
589 609 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
590 610 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
591 611 1.745087 GAATGCCACGTGTCATCCATT 59.255 47.619 13.12 12.61 0.00 3.16
592 612 2.708216 ATGCCACGTGTCATCCATTA 57.292 45.000 15.65 0.00 0.00 1.90
593 613 2.022764 TGCCACGTGTCATCCATTAG 57.977 50.000 15.65 0.00 0.00 1.73
594 614 1.552792 TGCCACGTGTCATCCATTAGA 59.447 47.619 15.65 0.00 0.00 2.10
595 615 2.027653 TGCCACGTGTCATCCATTAGAA 60.028 45.455 15.65 0.00 0.00 2.10
596 616 3.206150 GCCACGTGTCATCCATTAGAAT 58.794 45.455 15.65 0.00 0.00 2.40
597 617 3.002656 GCCACGTGTCATCCATTAGAATG 59.997 47.826 15.65 0.00 36.17 2.67
601 621 3.809832 CGTGTCATCCATTAGAATGGGTC 59.190 47.826 18.96 4.27 46.95 4.46
602 622 4.443457 CGTGTCATCCATTAGAATGGGTCT 60.443 45.833 18.96 4.31 46.95 3.85
603 623 5.059833 GTGTCATCCATTAGAATGGGTCTC 58.940 45.833 18.96 9.20 46.95 3.36
604 624 4.721274 TGTCATCCATTAGAATGGGTCTCA 59.279 41.667 18.96 11.28 46.95 3.27
605 625 5.059833 GTCATCCATTAGAATGGGTCTCAC 58.940 45.833 18.96 6.72 46.95 3.51
606 626 4.060900 CATCCATTAGAATGGGTCTCACG 58.939 47.826 18.96 0.00 46.95 4.35
607 627 3.711704 ATCCATTAGAATGGGTCTCACGT 59.288 43.478 18.96 0.00 46.95 4.49
608 628 4.443457 ATCCATTAGAATGGGTCTCACGTG 60.443 45.833 18.96 9.94 46.95 4.49
609 629 4.123497 CATTAGAATGGGTCTCACGTGA 57.877 45.455 18.88 18.88 37.84 4.35
610 630 3.868757 TTAGAATGGGTCTCACGTGAG 57.131 47.619 34.76 34.76 43.36 3.51
611 631 4.142160 CATTAGAATGGGTCTCACGTGAGA 60.142 45.833 37.87 37.87 39.41 3.27
617 637 4.923068 TCTCACGTGAGACCTGGT 57.077 55.556 37.87 0.00 45.48 4.00
618 638 2.642425 TCTCACGTGAGACCTGGTC 58.358 57.895 37.87 19.20 45.48 4.02
619 639 0.110678 TCTCACGTGAGACCTGGTCT 59.889 55.000 37.87 28.70 45.48 3.85
698 718 0.960364 TCACGATTGGGCAGGAAAGC 60.960 55.000 0.00 0.00 0.00 3.51
757 777 3.612479 GCAGCATGTGAAAAACGAAGGAT 60.612 43.478 0.00 0.00 39.31 3.24
789 809 4.378774 CTTCCATCGATCAAGCAAGAGAT 58.621 43.478 0.00 0.00 0.00 2.75
813 833 4.961438 AACATGAATGGCCAAAAGAAGT 57.039 36.364 10.96 1.30 0.00 3.01
1016 1041 2.031516 CCAGCTGCTCCAACAGTCG 61.032 63.158 8.66 0.00 39.96 4.18
1165 1202 1.285950 CTGGTGTTCGACGAGCTCA 59.714 57.895 15.40 9.93 0.00 4.26
1431 1468 4.430765 GAAGCCCTCGTCGCGGAA 62.431 66.667 6.13 0.00 0.00 4.30
1473 1510 1.329256 AGATCCGCGCTTACTACCAT 58.671 50.000 5.56 0.00 0.00 3.55
1560 1606 1.407258 GAGTTCCTGCAGATCTACGCT 59.593 52.381 17.39 3.01 0.00 5.07
1953 2059 2.350804 CGAGAACTACGACATCGAGGAA 59.649 50.000 3.06 0.00 43.02 3.36
2011 2141 3.741476 GCGGGTCCGAGTACGTGT 61.741 66.667 14.15 0.00 42.83 4.49
2757 2901 1.087771 TCATGATGCTGCTGCTCACG 61.088 55.000 17.00 10.21 40.48 4.35
2860 3010 9.500785 AATGATAACCCGTTGAAAATTGAATTT 57.499 25.926 0.00 0.00 0.00 1.82
2913 3063 1.658717 CTGGATTCGGCTACGCGAG 60.659 63.158 15.93 7.21 40.69 5.03
2917 3067 1.466024 GGATTCGGCTACGCGAGATAG 60.466 57.143 15.93 5.32 40.69 2.08
3023 3175 7.337689 TGATGCAAGTGAGATTGTTTATAGCTT 59.662 33.333 0.00 0.00 32.56 3.74
3024 3176 7.076842 TGCAAGTGAGATTGTTTATAGCTTC 57.923 36.000 0.00 0.00 32.56 3.86
3130 3282 9.826574 AGCATTTGAATATAAATTGTCAAGCAT 57.173 25.926 0.00 0.00 0.00 3.79
3181 3333 4.272489 TCTAGACCATGCAATTTCTTGGG 58.728 43.478 13.25 0.00 36.06 4.12
3202 3354 0.179124 CTCCGTGCTCTAGTTGCCTC 60.179 60.000 7.73 2.17 0.00 4.70
3203 3355 1.517257 CCGTGCTCTAGTTGCCTCG 60.517 63.158 7.73 10.87 0.00 4.63
3204 3356 1.517257 CGTGCTCTAGTTGCCTCGG 60.517 63.158 7.73 0.00 0.00 4.63
3205 3357 1.592223 GTGCTCTAGTTGCCTCGGT 59.408 57.895 7.73 0.00 0.00 4.69
3206 3358 0.037232 GTGCTCTAGTTGCCTCGGTT 60.037 55.000 7.73 0.00 0.00 4.44
3207 3359 0.246635 TGCTCTAGTTGCCTCGGTTC 59.753 55.000 7.73 0.00 0.00 3.62
3208 3360 0.246635 GCTCTAGTTGCCTCGGTTCA 59.753 55.000 0.00 0.00 0.00 3.18
3209 3361 1.134670 GCTCTAGTTGCCTCGGTTCAT 60.135 52.381 0.00 0.00 0.00 2.57
3211 3363 3.797184 GCTCTAGTTGCCTCGGTTCATAG 60.797 52.174 0.00 0.00 0.00 2.23
3213 3365 1.568504 AGTTGCCTCGGTTCATAGGA 58.431 50.000 0.00 0.00 34.58 2.94
3214 3366 2.119495 AGTTGCCTCGGTTCATAGGAT 58.881 47.619 0.00 0.00 34.58 3.24
3215 3367 3.305720 AGTTGCCTCGGTTCATAGGATA 58.694 45.455 0.00 0.00 34.58 2.59
3216 3368 3.322254 AGTTGCCTCGGTTCATAGGATAG 59.678 47.826 0.00 0.00 34.58 2.08
3217 3369 2.248248 TGCCTCGGTTCATAGGATAGG 58.752 52.381 0.00 0.00 34.58 2.57
3218 3370 2.158370 TGCCTCGGTTCATAGGATAGGA 60.158 50.000 0.00 0.00 34.58 2.94
3219 3371 3.100671 GCCTCGGTTCATAGGATAGGAT 58.899 50.000 0.00 0.00 34.58 3.24
3220 3372 3.515901 GCCTCGGTTCATAGGATAGGATT 59.484 47.826 0.00 0.00 34.58 3.01
3221 3373 4.710375 GCCTCGGTTCATAGGATAGGATTA 59.290 45.833 0.00 0.00 34.58 1.75
3222 3374 5.364157 GCCTCGGTTCATAGGATAGGATTAT 59.636 44.000 0.00 0.00 34.58 1.28
3223 3375 6.461788 GCCTCGGTTCATAGGATAGGATTATC 60.462 46.154 0.00 0.00 34.58 1.75
3225 3377 7.288852 CCTCGGTTCATAGGATAGGATTATCAT 59.711 40.741 0.00 0.00 37.92 2.45
3227 3379 9.355916 TCGGTTCATAGGATAGGATTATCATAG 57.644 37.037 0.00 0.00 36.37 2.23
3228 3380 8.580720 CGGTTCATAGGATAGGATTATCATAGG 58.419 40.741 0.00 0.00 36.37 2.57
3229 3381 9.661954 GGTTCATAGGATAGGATTATCATAGGA 57.338 37.037 0.00 1.09 39.88 2.94
3247 3399 9.621239 ATCATAGGAATAGGAATCTTGTAGGAA 57.379 33.333 0.00 0.00 0.00 3.36
3248 3400 9.447279 TCATAGGAATAGGAATCTTGTAGGAAA 57.553 33.333 0.00 0.00 0.00 3.13
3251 3403 8.337118 AGGAATAGGAATCTTGTAGGAAATGA 57.663 34.615 0.00 0.00 0.00 2.57
3252 3404 8.435982 AGGAATAGGAATCTTGTAGGAAATGAG 58.564 37.037 0.00 0.00 0.00 2.90
3253 3405 8.432805 GGAATAGGAATCTTGTAGGAAATGAGA 58.567 37.037 0.00 0.00 0.00 3.27
3255 3407 9.790344 AATAGGAATCTTGTAGGAAATGAGATG 57.210 33.333 0.00 0.00 0.00 2.90
3256 3408 7.443302 AGGAATCTTGTAGGAAATGAGATGA 57.557 36.000 0.00 0.00 0.00 2.92
3257 3409 7.278875 AGGAATCTTGTAGGAAATGAGATGAC 58.721 38.462 0.00 0.00 0.00 3.06
3258 3410 7.050377 GGAATCTTGTAGGAAATGAGATGACA 58.950 38.462 0.00 0.00 0.00 3.58
3259 3411 7.718753 GGAATCTTGTAGGAAATGAGATGACAT 59.281 37.037 0.00 0.00 0.00 3.06
3260 3412 8.447924 AATCTTGTAGGAAATGAGATGACATG 57.552 34.615 0.00 0.00 0.00 3.21
3261 3413 6.950842 TCTTGTAGGAAATGAGATGACATGT 58.049 36.000 0.00 0.00 0.00 3.21
3262 3414 8.078060 TCTTGTAGGAAATGAGATGACATGTA 57.922 34.615 0.00 0.00 0.00 2.29
3263 3415 8.708378 TCTTGTAGGAAATGAGATGACATGTAT 58.292 33.333 0.00 0.00 0.00 2.29
3264 3416 8.893219 TTGTAGGAAATGAGATGACATGTATC 57.107 34.615 0.00 2.87 0.00 2.24
3265 3417 8.255111 TGTAGGAAATGAGATGACATGTATCT 57.745 34.615 14.05 14.05 37.59 1.98
3266 3418 8.363390 TGTAGGAAATGAGATGACATGTATCTC 58.637 37.037 24.04 24.04 46.82 2.75
3276 3428 9.368674 GAGATGACATGTATCTCAAATCCTATG 57.631 37.037 24.95 0.00 46.22 2.23
3277 3429 9.097946 AGATGACATGTATCTCAAATCCTATGA 57.902 33.333 0.00 0.00 29.05 2.15
3278 3430 9.368674 GATGACATGTATCTCAAATCCTATGAG 57.631 37.037 0.00 0.00 44.53 2.90
3279 3431 8.255111 TGACATGTATCTCAAATCCTATGAGT 57.745 34.615 0.00 0.00 43.77 3.41
3280 3432 9.367160 TGACATGTATCTCAAATCCTATGAGTA 57.633 33.333 0.00 0.00 43.77 2.59
3281 3433 9.853555 GACATGTATCTCAAATCCTATGAGTAG 57.146 37.037 0.00 0.00 43.77 2.57
3282 3434 9.593565 ACATGTATCTCAAATCCTATGAGTAGA 57.406 33.333 0.00 0.00 43.77 2.59
3300 3452 9.606631 ATGAGTAGAAATAGGAAACAAGATGTC 57.393 33.333 0.00 0.00 0.00 3.06
3301 3453 8.593679 TGAGTAGAAATAGGAAACAAGATGTCA 58.406 33.333 0.00 0.00 0.00 3.58
3302 3454 9.606631 GAGTAGAAATAGGAAACAAGATGTCAT 57.393 33.333 0.00 0.00 0.00 3.06
3303 3455 9.965902 AGTAGAAATAGGAAACAAGATGTCATT 57.034 29.630 0.00 0.00 0.00 2.57
3306 3458 8.526147 AGAAATAGGAAACAAGATGTCATTTGG 58.474 33.333 10.50 0.00 0.00 3.28
3307 3459 7.781324 AATAGGAAACAAGATGTCATTTGGT 57.219 32.000 10.50 3.75 0.00 3.67
3308 3460 7.781324 ATAGGAAACAAGATGTCATTTGGTT 57.219 32.000 9.41 9.41 36.95 3.67
3309 3461 5.846203 AGGAAACAAGATGTCATTTGGTTG 58.154 37.500 12.70 6.32 34.55 3.77
3310 3462 5.598005 AGGAAACAAGATGTCATTTGGTTGA 59.402 36.000 12.70 0.00 34.55 3.18
3311 3463 5.691754 GGAAACAAGATGTCATTTGGTTGAC 59.308 40.000 12.70 0.00 45.05 3.18
3372 3524 9.540538 TTTTATTTTCCTATGAAATGTGGAGGA 57.459 29.630 0.00 0.00 40.08 3.71
3373 3525 9.713684 TTTATTTTCCTATGAAATGTGGAGGAT 57.286 29.630 0.00 0.00 40.08 3.24
3375 3527 8.930846 ATTTTCCTATGAAATGTGGAGGATAG 57.069 34.615 0.00 0.00 40.08 2.08
3376 3528 6.439636 TTCCTATGAAATGTGGAGGATAGG 57.560 41.667 0.00 0.00 36.22 2.57
3377 3529 5.726560 TCCTATGAAATGTGGAGGATAGGA 58.273 41.667 0.00 0.00 39.29 2.94
3378 3530 6.150332 TCCTATGAAATGTGGAGGATAGGAA 58.850 40.000 0.00 0.00 38.86 3.36
3379 3531 6.043243 TCCTATGAAATGTGGAGGATAGGAAC 59.957 42.308 0.00 0.00 38.86 3.62
3380 3532 4.503714 TGAAATGTGGAGGATAGGAACC 57.496 45.455 0.00 0.00 0.00 3.62
3381 3533 3.849574 TGAAATGTGGAGGATAGGAACCA 59.150 43.478 0.00 0.00 0.00 3.67
3382 3534 4.290985 TGAAATGTGGAGGATAGGAACCAA 59.709 41.667 0.00 0.00 34.11 3.67
3383 3535 5.044179 TGAAATGTGGAGGATAGGAACCAAT 60.044 40.000 0.00 0.00 34.11 3.16
3384 3536 4.713792 ATGTGGAGGATAGGAACCAATC 57.286 45.455 0.00 0.00 34.11 2.67
3422 3574 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
3423 3575 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
3424 3576 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
3425 3577 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
3426 3578 3.366052 TTCCTATGAACCAAAGGGCTC 57.634 47.619 0.00 0.00 37.90 4.70
3427 3579 2.562296 TCCTATGAACCAAAGGGCTCT 58.438 47.619 0.00 0.00 37.90 4.09
3428 3580 3.731431 TCCTATGAACCAAAGGGCTCTA 58.269 45.455 0.00 0.00 37.90 2.43
3429 3581 4.108570 TCCTATGAACCAAAGGGCTCTAA 58.891 43.478 0.00 0.00 37.90 2.10
3430 3582 4.538490 TCCTATGAACCAAAGGGCTCTAAA 59.462 41.667 0.00 0.00 37.90 1.85
3431 3583 4.884164 CCTATGAACCAAAGGGCTCTAAAG 59.116 45.833 0.00 0.00 37.90 1.85
3432 3584 3.154827 TGAACCAAAGGGCTCTAAAGG 57.845 47.619 0.00 0.00 37.90 3.11
3433 3585 2.714250 TGAACCAAAGGGCTCTAAAGGA 59.286 45.455 5.94 0.00 37.90 3.36
3434 3586 3.139397 TGAACCAAAGGGCTCTAAAGGAA 59.861 43.478 5.94 0.00 37.90 3.36
3435 3587 4.202673 TGAACCAAAGGGCTCTAAAGGAAT 60.203 41.667 5.94 0.00 37.90 3.01
3436 3588 3.969553 ACCAAAGGGCTCTAAAGGAATC 58.030 45.455 5.94 0.00 37.90 2.52
3437 3589 3.291584 CCAAAGGGCTCTAAAGGAATCC 58.708 50.000 0.00 0.00 0.00 3.01
3438 3590 3.053320 CCAAAGGGCTCTAAAGGAATCCT 60.053 47.826 0.00 0.00 33.87 3.24
3439 3591 4.166144 CCAAAGGGCTCTAAAGGAATCCTA 59.834 45.833 0.46 0.00 31.13 2.94
3440 3592 5.163045 CCAAAGGGCTCTAAAGGAATCCTAT 60.163 44.000 0.46 0.00 31.13 2.57
3441 3593 5.834281 AAGGGCTCTAAAGGAATCCTATC 57.166 43.478 0.46 0.00 31.13 2.08
3442 3594 4.172020 AGGGCTCTAAAGGAATCCTATCC 58.828 47.826 0.46 0.00 39.96 2.59
3477 3629 8.807948 TCTATGAAATTCCTCTAAACCAAAGG 57.192 34.615 0.00 0.00 0.00 3.11
3478 3630 8.611257 TCTATGAAATTCCTCTAAACCAAAGGA 58.389 33.333 0.00 0.00 37.42 3.36
3479 3631 7.709149 ATGAAATTCCTCTAAACCAAAGGAG 57.291 36.000 0.00 0.00 40.21 3.69
3480 3632 6.010219 TGAAATTCCTCTAAACCAAAGGAGG 58.990 40.000 0.00 0.00 44.69 4.30
3481 3633 3.434940 TTCCTCTAAACCAAAGGAGGC 57.565 47.619 0.00 0.00 43.46 4.70
3663 3819 4.148825 GATGCCGGTGAGCGGAGT 62.149 66.667 28.78 14.01 34.65 3.85
3692 3848 4.225042 AGCATTGTAGGTTGTGATGAGGTA 59.775 41.667 0.00 0.00 0.00 3.08
3731 3887 3.154827 TGGAAGTAAGGAAAAGGCTGG 57.845 47.619 0.00 0.00 0.00 4.85
3743 3899 1.755200 AAGGCTGGGTTAGGGAGAAA 58.245 50.000 0.00 0.00 0.00 2.52
3780 3936 6.234920 TGTCGAAAGGAAGGAAATATTGTGA 58.765 36.000 0.00 0.00 0.00 3.58
3808 3964 7.042187 GCATTCGATATAGATTCATTGGCTAGG 60.042 40.741 0.00 0.00 0.00 3.02
3816 3972 1.526917 CATTGGCTAGGCGGGAAGG 60.527 63.158 12.19 0.00 0.00 3.46
3836 3992 2.034221 GAGGGGAGGTGTGGTTGC 59.966 66.667 0.00 0.00 0.00 4.17
3843 4244 0.037326 GAGGTGTGGTTGCGAGATCA 60.037 55.000 0.00 0.00 0.00 2.92
3855 4256 1.131126 GCGAGATCACAACCACAATGG 59.869 52.381 0.00 0.00 45.02 3.16
3984 4395 1.753073 GAACTGGAGAAATGGGCCATG 59.247 52.381 22.01 8.06 0.00 3.66
4013 4424 1.198759 TCCCAGAAGGCGCCTTAGTT 61.199 55.000 40.30 25.49 36.26 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 9.607333 AGATGTATTCTATAGGAATCTGGTGAA 57.393 33.333 0.00 0.00 42.96 3.18
120 126 6.266131 TGGAATAAAAGGGCATAGAGATGT 57.734 37.500 0.00 0.00 35.30 3.06
201 217 5.648526 AGAGAAAGTAGAGAGATAACGTGCA 59.351 40.000 0.00 0.00 0.00 4.57
202 218 6.126568 AGAGAAAGTAGAGAGATAACGTGC 57.873 41.667 0.00 0.00 0.00 5.34
203 219 7.310072 TGAGAGAAAGTAGAGAGATAACGTG 57.690 40.000 0.00 0.00 0.00 4.49
204 220 7.771361 TGATGAGAGAAAGTAGAGAGATAACGT 59.229 37.037 0.00 0.00 0.00 3.99
205 221 8.148807 TGATGAGAGAAAGTAGAGAGATAACG 57.851 38.462 0.00 0.00 0.00 3.18
209 225 9.425248 AGAATTGATGAGAGAAAGTAGAGAGAT 57.575 33.333 0.00 0.00 0.00 2.75
210 226 8.821686 AGAATTGATGAGAGAAAGTAGAGAGA 57.178 34.615 0.00 0.00 0.00 3.10
316 332 4.445592 GGGCCATCCTTCTTTTTGGAAAAA 60.446 41.667 4.39 0.00 35.81 1.94
317 333 3.072330 GGGCCATCCTTCTTTTTGGAAAA 59.928 43.478 4.39 0.00 35.81 2.29
318 334 2.637382 GGGCCATCCTTCTTTTTGGAAA 59.363 45.455 4.39 0.00 35.81 3.13
319 335 2.256306 GGGCCATCCTTCTTTTTGGAA 58.744 47.619 4.39 0.00 35.81 3.53
320 336 1.552254 GGGGCCATCCTTCTTTTTGGA 60.552 52.381 4.39 0.00 36.72 3.53
321 337 0.904649 GGGGCCATCCTTCTTTTTGG 59.095 55.000 4.39 0.00 35.33 3.28
322 338 0.532115 CGGGGCCATCCTTCTTTTTG 59.468 55.000 4.39 0.00 35.33 2.44
323 339 0.614697 CCGGGGCCATCCTTCTTTTT 60.615 55.000 4.39 0.00 35.33 1.94
324 340 1.000359 CCGGGGCCATCCTTCTTTT 60.000 57.895 4.39 0.00 35.33 2.27
325 341 2.683475 CCGGGGCCATCCTTCTTT 59.317 61.111 4.39 0.00 35.33 2.52
326 342 3.420482 CCCGGGGCCATCCTTCTT 61.420 66.667 14.71 0.00 35.33 2.52
337 353 2.833121 GCATGTAAAGGCCCGGGG 60.833 66.667 25.28 9.31 0.00 5.73
338 354 2.044451 TGCATGTAAAGGCCCGGG 60.044 61.111 19.09 19.09 0.00 5.73
339 355 2.774799 GCTGCATGTAAAGGCCCGG 61.775 63.158 0.00 0.00 0.00 5.73
340 356 2.774799 GGCTGCATGTAAAGGCCCG 61.775 63.158 0.00 0.00 37.12 6.13
341 357 1.044790 ATGGCTGCATGTAAAGGCCC 61.045 55.000 9.54 0.00 41.84 5.80
342 358 1.610522 CTATGGCTGCATGTAAAGGCC 59.389 52.381 0.50 10.04 42.73 5.19
343 359 2.301346 ACTATGGCTGCATGTAAAGGC 58.699 47.619 0.50 10.47 39.33 4.35
344 360 5.877012 CCTATACTATGGCTGCATGTAAAGG 59.123 44.000 0.50 0.00 0.00 3.11
345 361 6.701340 TCCTATACTATGGCTGCATGTAAAG 58.299 40.000 0.50 0.00 0.00 1.85
346 362 6.680148 TCCTATACTATGGCTGCATGTAAA 57.320 37.500 0.50 0.00 0.00 2.01
347 363 6.680148 TTCCTATACTATGGCTGCATGTAA 57.320 37.500 0.50 0.00 0.00 2.41
348 364 6.874278 ATTCCTATACTATGGCTGCATGTA 57.126 37.500 0.50 0.00 0.00 2.29
349 365 5.768980 ATTCCTATACTATGGCTGCATGT 57.231 39.130 0.50 0.00 0.00 3.21
350 366 6.175471 TGAATTCCTATACTATGGCTGCATG 58.825 40.000 2.27 0.00 0.00 4.06
351 367 6.378661 TGAATTCCTATACTATGGCTGCAT 57.621 37.500 2.27 0.00 0.00 3.96
352 368 5.823861 TGAATTCCTATACTATGGCTGCA 57.176 39.130 2.27 0.00 0.00 4.41
353 369 6.936900 TCTTTGAATTCCTATACTATGGCTGC 59.063 38.462 2.27 0.00 0.00 5.25
354 370 8.778358 GTTCTTTGAATTCCTATACTATGGCTG 58.222 37.037 2.27 0.00 0.00 4.85
355 371 8.494433 TGTTCTTTGAATTCCTATACTATGGCT 58.506 33.333 2.27 0.00 0.00 4.75
356 372 8.677148 TGTTCTTTGAATTCCTATACTATGGC 57.323 34.615 2.27 0.00 0.00 4.40
361 377 9.911788 ATGTCATGTTCTTTGAATTCCTATACT 57.088 29.630 2.27 0.00 0.00 2.12
363 379 9.904198 TGATGTCATGTTCTTTGAATTCCTATA 57.096 29.630 2.27 0.00 0.00 1.31
364 380 8.680903 GTGATGTCATGTTCTTTGAATTCCTAT 58.319 33.333 2.27 0.00 0.00 2.57
389 405 3.732048 ATAGGGAAAACCCACGATTGT 57.268 42.857 8.05 0.00 41.63 2.71
398 414 6.071051 TGCAAAACATAGGAATAGGGAAAACC 60.071 38.462 0.00 0.00 40.67 3.27
429 445 3.533547 GCCTATTTGGATTGCATTGCAA 58.466 40.909 25.06 25.06 43.94 4.08
459 479 2.838202 TCATAAAGTGACACTCCCTCCC 59.162 50.000 8.93 0.00 0.00 4.30
477 497 5.264395 CTCCTTGGGTGGAATAAAAGTCAT 58.736 41.667 0.00 0.00 35.43 3.06
493 513 1.229658 ACACTCCCTCCCTCCTTGG 60.230 63.158 0.00 0.00 0.00 3.61
494 514 0.545309 TGACACTCCCTCCCTCCTTG 60.545 60.000 0.00 0.00 0.00 3.61
495 515 0.545548 GTGACACTCCCTCCCTCCTT 60.546 60.000 0.00 0.00 0.00 3.36
496 516 1.079438 GTGACACTCCCTCCCTCCT 59.921 63.158 0.00 0.00 0.00 3.69
497 517 0.545548 AAGTGACACTCCCTCCCTCC 60.546 60.000 8.93 0.00 0.00 4.30
498 518 1.353091 AAAGTGACACTCCCTCCCTC 58.647 55.000 8.93 0.00 0.00 4.30
499 519 2.715763 TAAAGTGACACTCCCTCCCT 57.284 50.000 8.93 0.00 0.00 4.20
500 520 2.838202 TCATAAAGTGACACTCCCTCCC 59.162 50.000 8.93 0.00 0.00 4.30
519 539 8.802267 CCCACTTAAAATCAGGAATAAAAGTCA 58.198 33.333 0.00 0.00 0.00 3.41
520 540 8.251026 CCCCACTTAAAATCAGGAATAAAAGTC 58.749 37.037 0.00 0.00 0.00 3.01
521 541 7.180229 CCCCCACTTAAAATCAGGAATAAAAGT 59.820 37.037 0.00 0.00 0.00 2.66
522 542 7.555965 CCCCCACTTAAAATCAGGAATAAAAG 58.444 38.462 0.00 0.00 0.00 2.27
523 543 7.489239 CCCCCACTTAAAATCAGGAATAAAA 57.511 36.000 0.00 0.00 0.00 1.52
544 564 3.683518 AAAGCATCCCCCACCCCC 61.684 66.667 0.00 0.00 0.00 5.40
545 565 2.364186 CAAAGCATCCCCCACCCC 60.364 66.667 0.00 0.00 0.00 4.95
546 566 1.984026 CACAAAGCATCCCCCACCC 60.984 63.158 0.00 0.00 0.00 4.61
547 567 0.324645 ATCACAAAGCATCCCCCACC 60.325 55.000 0.00 0.00 0.00 4.61
548 568 1.560505 AATCACAAAGCATCCCCCAC 58.439 50.000 0.00 0.00 0.00 4.61
549 569 2.323999 AAATCACAAAGCATCCCCCA 57.676 45.000 0.00 0.00 0.00 4.96
550 570 3.960102 TCATAAATCACAAAGCATCCCCC 59.040 43.478 0.00 0.00 0.00 5.40
551 571 5.596836 TTCATAAATCACAAAGCATCCCC 57.403 39.130 0.00 0.00 0.00 4.81
552 572 5.464389 GCATTCATAAATCACAAAGCATCCC 59.536 40.000 0.00 0.00 0.00 3.85
553 573 5.464389 GGCATTCATAAATCACAAAGCATCC 59.536 40.000 0.00 0.00 0.00 3.51
554 574 6.019318 GTGGCATTCATAAATCACAAAGCATC 60.019 38.462 0.00 0.00 0.00 3.91
555 575 5.813672 GTGGCATTCATAAATCACAAAGCAT 59.186 36.000 0.00 0.00 0.00 3.79
556 576 5.170021 GTGGCATTCATAAATCACAAAGCA 58.830 37.500 0.00 0.00 0.00 3.91
557 577 4.266029 CGTGGCATTCATAAATCACAAAGC 59.734 41.667 0.00 0.00 0.00 3.51
558 578 5.286797 CACGTGGCATTCATAAATCACAAAG 59.713 40.000 7.95 0.00 0.00 2.77
559 579 5.159925 CACGTGGCATTCATAAATCACAAA 58.840 37.500 7.95 0.00 0.00 2.83
560 580 4.217334 ACACGTGGCATTCATAAATCACAA 59.783 37.500 21.57 0.00 0.00 3.33
561 581 3.755905 ACACGTGGCATTCATAAATCACA 59.244 39.130 21.57 0.00 0.00 3.58
562 582 4.142708 TGACACGTGGCATTCATAAATCAC 60.143 41.667 23.03 0.00 0.00 3.06
563 583 4.006319 TGACACGTGGCATTCATAAATCA 58.994 39.130 23.03 6.48 0.00 2.57
564 584 4.614555 TGACACGTGGCATTCATAAATC 57.385 40.909 23.03 3.54 0.00 2.17
565 585 4.036734 GGATGACACGTGGCATTCATAAAT 59.963 41.667 36.07 14.34 45.42 1.40
566 586 3.376859 GGATGACACGTGGCATTCATAAA 59.623 43.478 36.07 7.37 45.42 1.40
567 587 2.942376 GGATGACACGTGGCATTCATAA 59.058 45.455 36.07 8.22 45.42 1.90
568 588 2.093235 TGGATGACACGTGGCATTCATA 60.093 45.455 36.64 19.08 43.95 2.15
569 589 1.339920 TGGATGACACGTGGCATTCAT 60.340 47.619 36.64 26.22 43.95 2.57
570 590 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
571 591 1.382522 ATGGATGACACGTGGCATTC 58.617 50.000 36.07 34.16 45.42 2.67
572 592 1.838112 AATGGATGACACGTGGCATT 58.162 45.000 36.07 19.83 45.42 3.56
574 594 1.552792 TCTAATGGATGACACGTGGCA 59.447 47.619 29.28 29.28 37.54 4.92
575 595 2.309528 TCTAATGGATGACACGTGGC 57.690 50.000 21.57 19.24 0.00 5.01
576 596 4.801147 CATTCTAATGGATGACACGTGG 57.199 45.455 21.57 1.66 32.78 4.94
588 608 4.115516 CTCACGTGAGACCCATTCTAATG 58.884 47.826 36.73 8.45 44.74 1.90
589 609 4.023980 TCTCACGTGAGACCCATTCTAAT 58.976 43.478 37.87 0.00 45.48 1.73
590 610 3.427573 TCTCACGTGAGACCCATTCTAA 58.572 45.455 37.87 16.78 45.48 2.10
591 611 3.081710 TCTCACGTGAGACCCATTCTA 57.918 47.619 37.87 17.48 45.48 2.10
592 612 1.924731 TCTCACGTGAGACCCATTCT 58.075 50.000 37.87 0.00 45.48 2.40
601 621 2.647356 AGACCAGGTCTCACGTGAG 58.353 57.895 34.76 34.76 38.71 3.51
602 622 4.923068 AGACCAGGTCTCACGTGA 57.077 55.556 17.31 18.88 38.71 4.35
630 650 5.051153 GGGTCGGTAAAAAGCAATGAAAAA 58.949 37.500 0.00 0.00 0.00 1.94
631 651 4.099573 TGGGTCGGTAAAAAGCAATGAAAA 59.900 37.500 0.00 0.00 0.00 2.29
632 652 3.637229 TGGGTCGGTAAAAAGCAATGAAA 59.363 39.130 0.00 0.00 0.00 2.69
633 653 3.223435 TGGGTCGGTAAAAAGCAATGAA 58.777 40.909 0.00 0.00 0.00 2.57
640 660 6.753107 AGTTAATCATGGGTCGGTAAAAAG 57.247 37.500 0.00 0.00 0.00 2.27
698 718 1.815003 GGACAGCCAGAAATCAGGTTG 59.185 52.381 7.07 7.07 39.13 3.77
757 777 1.194218 TCGATGGAAGCCATGTCTCA 58.806 50.000 3.25 0.00 45.26 3.27
789 809 6.705381 CACTTCTTTTGGCCATTCATGTTTTA 59.295 34.615 6.09 0.00 0.00 1.52
813 833 6.090483 TCCTTTGAAAATTTGGAATACGCA 57.910 33.333 0.00 0.00 0.00 5.24
941 964 8.836268 ATATATAGTACTAGTGGATAGCGAGC 57.164 38.462 5.39 0.00 34.56 5.03
1016 1041 1.143969 GCCACGACCACTATGCGTAC 61.144 60.000 0.00 0.00 36.37 3.67
1165 1202 2.606587 GGATCTGCACCACCCACCT 61.607 63.158 0.00 0.00 0.00 4.00
1443 1480 2.409243 CGGATCTTGCGCTCGAGA 59.591 61.111 18.75 10.08 37.15 4.04
1473 1510 1.801332 GCTGAAGTCGAGGTAGCGA 59.199 57.895 0.00 0.00 38.07 4.93
1560 1606 4.680237 CCACAGTCTTCGGCGGCA 62.680 66.667 10.53 0.00 0.00 5.69
1899 1990 1.668101 CCTCTGCCGTAGTGTCCTCC 61.668 65.000 0.00 0.00 0.00 4.30
2038 2168 4.735132 CCCGAGCTTCGACGCCAA 62.735 66.667 10.66 0.00 43.74 4.52
2152 2282 2.761767 TGAAGAATGATTCGACGGGGTA 59.238 45.455 0.00 0.00 34.02 3.69
2757 2901 2.125350 CAGAAGGCCTGGAGCGTC 60.125 66.667 5.69 0.00 45.17 5.19
2860 3010 1.848388 AGATGCAGATCACCCATCCAA 59.152 47.619 13.38 0.00 36.82 3.53
2913 3063 4.579454 AACACATGCATGCCAATCTATC 57.421 40.909 26.53 0.00 0.00 2.08
2917 3067 2.004017 CCAAACACATGCATGCCAATC 58.996 47.619 26.53 0.00 0.00 2.67
2994 3146 5.779529 AAACAATCTCACTTGCATCAACT 57.220 34.783 0.00 0.00 0.00 3.16
3023 3175 5.936187 ACAAACCAATGGCATTCATATGA 57.064 34.783 10.36 0.00 34.44 2.15
3024 3176 7.548427 TGTTTACAAACCAATGGCATTCATATG 59.452 33.333 10.36 9.94 38.11 1.78
3130 3282 6.042638 ACCGAGATTTCAAATCTTCTGAGA 57.957 37.500 14.02 0.00 36.09 3.27
3135 3287 5.880054 TCCAACCGAGATTTCAAATCTTC 57.120 39.130 14.02 6.77 0.00 2.87
3202 3354 8.580720 CCTATGATAATCCTATCCTATGAACCG 58.419 40.741 0.00 0.00 34.10 4.44
3203 3355 9.661954 TCCTATGATAATCCTATCCTATGAACC 57.338 37.037 0.00 0.00 34.10 3.62
3221 3373 9.621239 TTCCTACAAGATTCCTATTCCTATGAT 57.379 33.333 0.00 0.00 0.00 2.45
3222 3374 9.447279 TTTCCTACAAGATTCCTATTCCTATGA 57.553 33.333 0.00 0.00 0.00 2.15
3225 3377 9.447279 TCATTTCCTACAAGATTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
3227 3379 8.432805 TCTCATTTCCTACAAGATTCCTATTCC 58.567 37.037 0.00 0.00 0.00 3.01
3229 3381 9.790344 CATCTCATTTCCTACAAGATTCCTATT 57.210 33.333 0.00 0.00 0.00 1.73
3230 3382 9.163894 TCATCTCATTTCCTACAAGATTCCTAT 57.836 33.333 0.00 0.00 0.00 2.57
3231 3383 8.424918 GTCATCTCATTTCCTACAAGATTCCTA 58.575 37.037 0.00 0.00 0.00 2.94
3232 3384 7.092712 TGTCATCTCATTTCCTACAAGATTCCT 60.093 37.037 0.00 0.00 0.00 3.36
3233 3385 7.050377 TGTCATCTCATTTCCTACAAGATTCC 58.950 38.462 0.00 0.00 0.00 3.01
3234 3386 8.557864 CATGTCATCTCATTTCCTACAAGATTC 58.442 37.037 0.00 0.00 0.00 2.52
3235 3387 8.051535 ACATGTCATCTCATTTCCTACAAGATT 58.948 33.333 0.00 0.00 0.00 2.40
3236 3388 7.571919 ACATGTCATCTCATTTCCTACAAGAT 58.428 34.615 0.00 0.00 0.00 2.40
3237 3389 6.950842 ACATGTCATCTCATTTCCTACAAGA 58.049 36.000 0.00 0.00 0.00 3.02
3238 3390 8.899427 ATACATGTCATCTCATTTCCTACAAG 57.101 34.615 0.00 0.00 0.00 3.16
3239 3391 8.708378 AGATACATGTCATCTCATTTCCTACAA 58.292 33.333 0.00 0.00 0.00 2.41
3240 3392 8.255111 AGATACATGTCATCTCATTTCCTACA 57.745 34.615 0.00 0.00 0.00 2.74
3241 3393 8.755696 GAGATACATGTCATCTCATTTCCTAC 57.244 38.462 24.95 8.46 45.17 3.18
3250 3402 9.368674 CATAGGATTTGAGATACATGTCATCTC 57.631 37.037 24.04 24.04 45.76 2.75
3251 3403 9.097946 TCATAGGATTTGAGATACATGTCATCT 57.902 33.333 0.00 9.42 35.43 2.90
3252 3404 9.368674 CTCATAGGATTTGAGATACATGTCATC 57.631 37.037 0.00 4.47 42.63 2.92
3253 3405 8.878211 ACTCATAGGATTTGAGATACATGTCAT 58.122 33.333 0.00 0.00 42.63 3.06
3254 3406 8.255111 ACTCATAGGATTTGAGATACATGTCA 57.745 34.615 0.00 0.00 42.63 3.58
3255 3407 9.853555 CTACTCATAGGATTTGAGATACATGTC 57.146 37.037 0.00 0.00 42.63 3.06
3256 3408 9.593565 TCTACTCATAGGATTTGAGATACATGT 57.406 33.333 2.69 2.69 42.63 3.21
3263 3415 9.883293 TCCTATTTCTACTCATAGGATTTGAGA 57.117 33.333 7.63 0.00 44.16 3.27
3270 3422 9.488762 TCTTGTTTCCTATTTCTACTCATAGGA 57.511 33.333 4.13 4.13 46.34 2.94
3274 3426 9.606631 GACATCTTGTTTCCTATTTCTACTCAT 57.393 33.333 0.00 0.00 0.00 2.90
3275 3427 8.593679 TGACATCTTGTTTCCTATTTCTACTCA 58.406 33.333 0.00 0.00 0.00 3.41
3276 3428 9.606631 ATGACATCTTGTTTCCTATTTCTACTC 57.393 33.333 0.00 0.00 0.00 2.59
3277 3429 9.965902 AATGACATCTTGTTTCCTATTTCTACT 57.034 29.630 0.00 0.00 0.00 2.57
3280 3432 8.526147 CCAAATGACATCTTGTTTCCTATTTCT 58.474 33.333 0.00 0.00 0.00 2.52
3281 3433 8.306761 ACCAAATGACATCTTGTTTCCTATTTC 58.693 33.333 0.00 0.00 0.00 2.17
3282 3434 8.193953 ACCAAATGACATCTTGTTTCCTATTT 57.806 30.769 0.00 0.00 0.00 1.40
3283 3435 7.781324 ACCAAATGACATCTTGTTTCCTATT 57.219 32.000 0.00 0.00 0.00 1.73
3284 3436 7.451255 TCAACCAAATGACATCTTGTTTCCTAT 59.549 33.333 0.00 0.00 0.00 2.57
3285 3437 6.775142 TCAACCAAATGACATCTTGTTTCCTA 59.225 34.615 0.00 0.00 0.00 2.94
3286 3438 5.598005 TCAACCAAATGACATCTTGTTTCCT 59.402 36.000 0.00 0.00 0.00 3.36
3287 3439 5.841810 TCAACCAAATGACATCTTGTTTCC 58.158 37.500 0.00 0.00 0.00 3.13
3346 3498 9.540538 TCCTCCACATTTCATAGGAAAATAAAA 57.459 29.630 6.65 0.00 45.52 1.52
3347 3499 9.713684 ATCCTCCACATTTCATAGGAAAATAAA 57.286 29.630 6.65 0.00 45.52 1.40
3350 3502 7.946776 CCTATCCTCCACATTTCATAGGAAAAT 59.053 37.037 6.65 0.00 45.52 1.82
3351 3503 7.128728 TCCTATCCTCCACATTTCATAGGAAAA 59.871 37.037 6.65 0.00 45.52 2.29
3352 3504 6.619437 TCCTATCCTCCACATTTCATAGGAAA 59.381 38.462 4.85 4.85 46.36 3.13
3353 3505 6.150332 TCCTATCCTCCACATTTCATAGGAA 58.850 40.000 3.47 0.00 39.17 3.36
3354 3506 5.726560 TCCTATCCTCCACATTTCATAGGA 58.273 41.667 2.01 2.01 39.61 2.94
3355 3507 6.234177 GTTCCTATCCTCCACATTTCATAGG 58.766 44.000 0.00 0.00 35.93 2.57
3356 3508 6.183361 TGGTTCCTATCCTCCACATTTCATAG 60.183 42.308 0.00 0.00 0.00 2.23
3357 3509 5.669904 TGGTTCCTATCCTCCACATTTCATA 59.330 40.000 0.00 0.00 0.00 2.15
3358 3510 4.478317 TGGTTCCTATCCTCCACATTTCAT 59.522 41.667 0.00 0.00 0.00 2.57
3359 3511 3.849574 TGGTTCCTATCCTCCACATTTCA 59.150 43.478 0.00 0.00 0.00 2.69
3360 3512 4.503714 TGGTTCCTATCCTCCACATTTC 57.496 45.455 0.00 0.00 0.00 2.17
3361 3513 4.946160 TTGGTTCCTATCCTCCACATTT 57.054 40.909 0.00 0.00 0.00 2.32
3362 3514 4.141158 GGATTGGTTCCTATCCTCCACATT 60.141 45.833 19.71 0.00 41.78 2.71
3363 3515 3.395941 GGATTGGTTCCTATCCTCCACAT 59.604 47.826 19.71 0.00 41.78 3.21
3364 3516 2.777692 GGATTGGTTCCTATCCTCCACA 59.222 50.000 19.71 0.00 41.78 4.17
3365 3517 3.493767 GGATTGGTTCCTATCCTCCAC 57.506 52.381 19.71 0.00 41.78 4.02
3399 3551 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
3400 3552 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
3401 3553 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
3402 3554 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
3403 3555 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
3404 3556 3.633986 GAGCCCTTTGGTTCATAGGAATG 59.366 47.826 6.07 0.00 41.28 2.67
3405 3557 3.529319 AGAGCCCTTTGGTTCATAGGAAT 59.471 43.478 6.07 0.00 43.89 3.01
3406 3558 2.919602 AGAGCCCTTTGGTTCATAGGAA 59.080 45.455 6.07 0.00 43.89 3.36
3407 3559 2.562296 AGAGCCCTTTGGTTCATAGGA 58.438 47.619 6.07 0.00 43.89 2.94
3408 3560 4.503714 TTAGAGCCCTTTGGTTCATAGG 57.496 45.455 0.00 0.00 43.89 2.57
3409 3561 4.884164 CCTTTAGAGCCCTTTGGTTCATAG 59.116 45.833 0.00 0.00 43.89 2.23
3410 3562 4.538490 TCCTTTAGAGCCCTTTGGTTCATA 59.462 41.667 0.00 0.00 43.89 2.15
3411 3563 3.333680 TCCTTTAGAGCCCTTTGGTTCAT 59.666 43.478 0.00 0.00 43.89 2.57
3412 3564 2.714250 TCCTTTAGAGCCCTTTGGTTCA 59.286 45.455 0.00 0.00 43.89 3.18
3413 3565 3.434940 TCCTTTAGAGCCCTTTGGTTC 57.565 47.619 0.00 0.00 41.91 3.62
3414 3566 3.895704 TTCCTTTAGAGCCCTTTGGTT 57.104 42.857 0.00 0.00 0.00 3.67
3415 3567 3.309193 GGATTCCTTTAGAGCCCTTTGGT 60.309 47.826 0.00 0.00 0.00 3.67
3416 3568 3.053320 AGGATTCCTTTAGAGCCCTTTGG 60.053 47.826 0.00 0.00 0.00 3.28
3417 3569 4.242336 AGGATTCCTTTAGAGCCCTTTG 57.758 45.455 0.00 0.00 0.00 2.77
3418 3570 5.073827 GGATAGGATTCCTTTAGAGCCCTTT 59.926 44.000 11.25 0.00 34.61 3.11
3419 3571 4.599676 GGATAGGATTCCTTTAGAGCCCTT 59.400 45.833 11.25 0.00 34.61 3.95
3420 3572 4.140326 AGGATAGGATTCCTTTAGAGCCCT 60.140 45.833 11.25 2.75 43.88 5.19
3421 3573 4.172020 AGGATAGGATTCCTTTAGAGCCC 58.828 47.826 11.25 0.37 43.88 5.19
3422 3574 5.090845 AGAGGATAGGATTCCTTTAGAGCC 58.909 45.833 11.25 4.91 46.35 4.70
3423 3575 7.179269 TCTAGAGGATAGGATTCCTTTAGAGC 58.821 42.308 11.25 0.00 46.66 4.09
3428 3580 9.459094 AGAAATTCTAGAGGATAGGATTCCTTT 57.541 33.333 11.25 2.39 46.35 3.11
3451 3603 9.243105 CCTTTGGTTTAGAGGAATTTCATAGAA 57.757 33.333 0.00 0.00 32.11 2.10
3452 3604 8.611257 TCCTTTGGTTTAGAGGAATTTCATAGA 58.389 33.333 0.00 0.00 36.67 1.98
3453 3605 8.807948 TCCTTTGGTTTAGAGGAATTTCATAG 57.192 34.615 0.00 0.00 36.67 2.23
3454 3606 8.807948 CTCCTTTGGTTTAGAGGAATTTCATA 57.192 34.615 0.00 0.00 39.00 2.15
3455 3607 7.709149 CTCCTTTGGTTTAGAGGAATTTCAT 57.291 36.000 0.00 0.00 39.00 2.57
3463 3615 2.041755 AAGGCCTCCTTTGGTTTAGAGG 59.958 50.000 5.23 0.43 41.69 3.69
3464 3616 3.441500 AAGGCCTCCTTTGGTTTAGAG 57.558 47.619 5.23 0.00 41.69 2.43
3465 3617 3.265995 CCTAAGGCCTCCTTTGGTTTAGA 59.734 47.826 5.23 0.00 46.36 2.10
3466 3618 3.621558 CCTAAGGCCTCCTTTGGTTTAG 58.378 50.000 5.23 0.00 46.36 1.85
3467 3619 3.732048 CCTAAGGCCTCCTTTGGTTTA 57.268 47.619 5.23 0.00 46.36 2.01
3468 3620 2.604912 CCTAAGGCCTCCTTTGGTTT 57.395 50.000 5.23 0.00 46.36 3.27
3472 3624 2.225017 TGAAACCCTAAGGCCTCCTTTG 60.225 50.000 5.23 1.97 41.69 2.77
3473 3625 2.070573 TGAAACCCTAAGGCCTCCTTT 58.929 47.619 5.23 0.00 41.69 3.11
3474 3626 1.755200 TGAAACCCTAAGGCCTCCTT 58.245 50.000 5.23 3.40 46.63 3.36
3475 3627 1.755200 TTGAAACCCTAAGGCCTCCT 58.245 50.000 5.23 0.00 36.11 3.69
3476 3628 2.168496 GTTTGAAACCCTAAGGCCTCC 58.832 52.381 5.23 0.00 36.11 4.30
3477 3629 3.156288 AGTTTGAAACCCTAAGGCCTC 57.844 47.619 5.23 0.00 36.11 4.70
3478 3630 3.230976 CAAGTTTGAAACCCTAAGGCCT 58.769 45.455 0.00 0.00 36.11 5.19
3479 3631 2.963101 ACAAGTTTGAAACCCTAAGGCC 59.037 45.455 4.14 0.00 36.11 5.19
3480 3632 4.825634 AGTACAAGTTTGAAACCCTAAGGC 59.174 41.667 4.14 0.00 36.11 4.35
3481 3633 5.826208 ACAGTACAAGTTTGAAACCCTAAGG 59.174 40.000 4.14 0.00 40.04 2.69
3568 3724 1.222567 TCCCTCTAGATTTTGGGGGC 58.777 55.000 13.45 0.00 40.05 5.80
3663 3819 1.899814 ACAACCTACAATGCTCTCCGA 59.100 47.619 0.00 0.00 0.00 4.55
3692 3848 3.053693 TCCAATCATCCTCGTTCCCAATT 60.054 43.478 0.00 0.00 0.00 2.32
3731 3887 0.694771 AACCCCGTTTCTCCCTAACC 59.305 55.000 0.00 0.00 0.00 2.85
3743 3899 0.686224 TTCGACAACCATAACCCCGT 59.314 50.000 0.00 0.00 0.00 5.28
3780 3936 5.587844 GCCAATGAATCTATATCGAATGCCT 59.412 40.000 0.00 0.00 0.00 4.75
3816 3972 4.677151 ACCACACCTCCCCTCCCC 62.677 72.222 0.00 0.00 0.00 4.81
3836 3992 2.698803 TCCATTGTGGTTGTGATCTCG 58.301 47.619 0.00 0.00 39.03 4.04
3843 4244 7.734942 ACATAAAGAAATTCCATTGTGGTTGT 58.265 30.769 9.43 0.00 39.03 3.32
3903 4304 9.961265 AATATGCAGAAGATTTGTACATCATTG 57.039 29.630 0.00 0.00 0.00 2.82
3958 4369 3.615155 CCCATTTCTCCAGTTCTCTTCC 58.385 50.000 0.00 0.00 0.00 3.46
3959 4370 3.013219 GCCCATTTCTCCAGTTCTCTTC 58.987 50.000 0.00 0.00 0.00 2.87
3984 4395 0.758123 CCTTCTGGGAGATCTGGAGC 59.242 60.000 0.00 0.00 37.23 4.70
4013 4424 7.309133 GGTTCTCATGTTAATGTTGATTGTCCA 60.309 37.037 0.00 0.00 35.15 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.