Multiple sequence alignment - TraesCS7A01G142100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G142100 chr7A 100.000 3428 0 0 1 3428 93143166 93139739 0.000000e+00 6331
1 TraesCS7A01G142100 chr7A 80.546 1208 176 38 1411 2609 94395996 94397153 0.000000e+00 874
2 TraesCS7A01G142100 chr7A 96.735 490 16 0 1 490 373293676 373294165 0.000000e+00 817
3 TraesCS7A01G142100 chr7A 92.339 496 30 5 1 490 388301354 388300861 0.000000e+00 699
4 TraesCS7A01G142100 chr7A 83.283 329 42 8 1029 1350 94376328 94376650 1.200000e-74 291
5 TraesCS7A01G142100 chr7A 77.872 470 86 11 1640 2105 94376865 94377320 3.370000e-70 276
6 TraesCS7A01G142100 chr7A 81.459 329 52 6 1004 1323 94294697 94295025 9.440000e-66 261
7 TraesCS7A01G142100 chr7A 80.124 161 25 6 2103 2261 94382589 94382744 2.800000e-21 113
8 TraesCS7A01G142100 chr7D 92.541 1448 64 8 1346 2776 91664745 91663325 0.000000e+00 2036
9 TraesCS7A01G142100 chr7D 91.158 622 38 14 792 1401 91665345 91664729 0.000000e+00 828
10 TraesCS7A01G142100 chr7D 83.333 474 49 25 2793 3249 91663403 91662943 8.850000e-111 411
11 TraesCS7A01G142100 chr7D 78.832 548 76 19 1022 1569 92227002 92227509 1.970000e-87 333
12 TraesCS7A01G142100 chr7D 88.933 253 20 4 2524 2776 39852597 39852841 4.300000e-79 305
13 TraesCS7A01G142100 chr7D 76.923 559 96 20 1882 2414 92227970 92228521 1.560000e-73 287
14 TraesCS7A01G142100 chr7D 90.860 186 15 1 610 795 91665560 91665377 7.350000e-62 248
15 TraesCS7A01G142100 chr7B 84.598 883 113 12 1372 2252 43268583 43269444 0.000000e+00 856
16 TraesCS7A01G142100 chr7B 93.673 490 28 2 1 490 623435382 623435868 0.000000e+00 730
17 TraesCS7A01G142100 chr7B 89.305 561 44 9 792 1342 43267963 43268517 0.000000e+00 689
18 TraesCS7A01G142100 chr7B 81.305 567 81 15 1005 1569 44255879 44256422 1.460000e-118 436
19 TraesCS7A01G142100 chr7B 77.086 803 138 27 1640 2414 44256463 44257247 4.090000e-114 422
20 TraesCS7A01G142100 chr7B 90.099 303 26 2 2260 2562 43269487 43269785 1.150000e-104 390
21 TraesCS7A01G142100 chr7B 90.099 303 26 2 2260 2562 43273527 43273825 1.150000e-104 390
22 TraesCS7A01G142100 chr7B 84.406 404 39 9 2799 3182 43269897 43270296 3.230000e-100 375
23 TraesCS7A01G142100 chr7B 84.406 404 39 9 2799 3182 43273937 43274336 3.230000e-100 375
24 TraesCS7A01G142100 chr7B 79.455 550 74 28 2067 2609 44270289 44270806 1.510000e-93 353
25 TraesCS7A01G142100 chr7B 91.979 187 14 1 610 796 43267747 43267932 9.440000e-66 261
26 TraesCS7A01G142100 chr7B 83.065 248 39 2 1015 1259 44250312 44250559 4.450000e-54 222
27 TraesCS7A01G142100 chr7B 79.275 193 25 10 2066 2249 43547877 43548063 1.670000e-23 121
28 TraesCS7A01G142100 chr7B 94.366 71 4 0 3175 3245 43272813 43272883 3.620000e-20 110
29 TraesCS7A01G142100 chr7B 94.366 71 4 0 3175 3245 43275547 43275617 3.620000e-20 110
30 TraesCS7A01G142100 chr7B 94.366 71 4 0 3175 3245 43299764 43299834 3.620000e-20 110
31 TraesCS7A01G142100 chr4A 97.384 497 11 2 1 495 535416730 535416234 0.000000e+00 845
32 TraesCS7A01G142100 chr1A 97.347 490 13 0 1 490 5949958 5949469 0.000000e+00 833
33 TraesCS7A01G142100 chr1A 96.552 174 5 1 3256 3428 265443674 265443501 1.560000e-73 287
34 TraesCS7A01G142100 chr6B 94.375 480 24 2 8 487 10864723 10865199 0.000000e+00 734
35 TraesCS7A01G142100 chr6B 95.977 174 6 1 3256 3428 693369065 693369238 7.240000e-72 281
36 TraesCS7A01G142100 chr6B 94.828 174 8 1 3256 3428 712091655 712091828 1.570000e-68 270
37 TraesCS7A01G142100 chr6A 93.561 497 21 4 4 490 353064781 353064286 0.000000e+00 730
38 TraesCS7A01G142100 chr3A 92.871 505 25 3 1 497 681734486 681733985 0.000000e+00 723
39 TraesCS7A01G142100 chr3A 92.262 504 24 4 1 490 341804636 341804134 0.000000e+00 701
40 TraesCS7A01G142100 chr3A 92.086 139 9 2 474 612 612957962 612958098 9.710000e-46 195
41 TraesCS7A01G142100 chrUn 81.571 624 94 11 1629 2252 342457807 342457205 2.380000e-136 496
42 TraesCS7A01G142100 chrUn 91.700 253 14 3 2524 2776 156628641 156628396 9.110000e-91 344
43 TraesCS7A01G142100 chrUn 94.366 71 4 0 3175 3245 342459298 342459228 3.620000e-20 110
44 TraesCS7A01G142100 chr5D 91.304 253 15 3 2524 2776 120906884 120907129 4.240000e-89 339
45 TraesCS7A01G142100 chr5D 91.593 226 11 8 2866 3088 504498065 504498285 4.300000e-79 305
46 TraesCS7A01G142100 chr4D 91.304 253 15 3 2524 2776 288519865 288519620 4.240000e-89 339
47 TraesCS7A01G142100 chr4D 87.171 304 27 9 2793 3088 287863655 287863356 5.480000e-88 335
48 TraesCS7A01G142100 chr4D 90.551 254 16 4 2524 2776 287863823 287863577 2.550000e-86 329
49 TraesCS7A01G142100 chr3D 87.171 304 26 12 2793 3088 12036688 12036986 1.970000e-87 333
50 TraesCS7A01G142100 chr3D 87.171 304 26 12 2793 3088 501693840 501693542 1.970000e-87 333
51 TraesCS7A01G142100 chr3D 90.514 253 17 3 2524 2776 501694007 501693762 9.170000e-86 327
52 TraesCS7A01G142100 chr3D 89.723 253 19 3 2524 2776 12036521 12036766 1.990000e-82 316
53 TraesCS7A01G142100 chr3D 91.954 174 13 1 3256 3428 379111260 379111087 3.420000e-60 243
54 TraesCS7A01G142100 chr1D 87.162 296 28 9 2799 3088 19837259 19836968 9.170000e-86 327
55 TraesCS7A01G142100 chr1D 90.119 253 18 3 2524 2776 19837434 19837189 4.270000e-84 322
56 TraesCS7A01G142100 chr6D 91.150 226 14 6 2866 3088 65524499 65524277 5.560000e-78 302
57 TraesCS7A01G142100 chr6D 85.172 290 40 3 964 1252 459042354 459042067 9.300000e-76 294
58 TraesCS7A01G142100 chr6D 85.921 277 37 2 964 1240 459042518 459042792 9.300000e-76 294
59 TraesCS7A01G142100 chr6D 92.529 174 12 1 3256 3428 346680026 346680199 7.350000e-62 248
60 TraesCS7A01G142100 chr4B 97.126 174 4 1 3256 3428 136055041 136054868 3.350000e-75 292
61 TraesCS7A01G142100 chr4B 93.701 127 7 1 490 615 129713142 129713016 4.520000e-44 189
62 TraesCS7A01G142100 chr4B 94.309 123 7 0 490 612 567457523 567457401 4.520000e-44 189
63 TraesCS7A01G142100 chr4B 93.701 127 7 1 490 615 649126272 649126146 4.520000e-44 189
64 TraesCS7A01G142100 chr1B 94.828 174 8 1 3256 3428 161278774 161278601 1.570000e-68 270
65 TraesCS7A01G142100 chr1B 94.828 174 8 1 3256 3428 161328375 161328202 1.570000e-68 270
66 TraesCS7A01G142100 chr2D 91.954 174 13 1 3256 3428 446532494 446532321 3.420000e-60 243
67 TraesCS7A01G142100 chr5A 90.728 151 10 4 467 615 598247196 598247048 7.500000e-47 198
68 TraesCS7A01G142100 chr5A 93.284 134 7 2 477 610 547337037 547337168 2.700000e-46 196
69 TraesCS7A01G142100 chr2B 94.488 127 6 1 490 615 608941059 608940933 9.710000e-46 195
70 TraesCS7A01G142100 chr2B 92.424 132 9 1 490 620 195368797 195368666 1.620000e-43 187
71 TraesCS7A01G142100 chr2A 91.912 136 9 2 490 623 723523155 723523020 4.520000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G142100 chr7A 93139739 93143166 3427 True 6331.000000 6331 100.000000 1 3428 1 chr7A.!!$R1 3427
1 TraesCS7A01G142100 chr7A 94395996 94397153 1157 False 874.000000 874 80.546000 1411 2609 1 chr7A.!!$F3 1198
2 TraesCS7A01G142100 chr7A 94376328 94377320 992 False 283.500000 291 80.577500 1029 2105 2 chr7A.!!$F5 1076
3 TraesCS7A01G142100 chr7D 91662943 91665560 2617 True 880.750000 2036 89.473000 610 3249 4 chr7D.!!$R1 2639
4 TraesCS7A01G142100 chr7D 92227002 92228521 1519 False 310.000000 333 77.877500 1022 2414 2 chr7D.!!$F2 1392
5 TraesCS7A01G142100 chr7B 44255879 44257247 1368 False 429.000000 436 79.195500 1005 2414 2 chr7B.!!$F7 1409
6 TraesCS7A01G142100 chr7B 43267747 43275617 7870 False 395.111111 856 89.291556 610 3245 9 chr7B.!!$F6 2635
7 TraesCS7A01G142100 chr7B 44270289 44270806 517 False 353.000000 353 79.455000 2067 2609 1 chr7B.!!$F4 542
8 TraesCS7A01G142100 chr3A 681733985 681734486 501 True 723.000000 723 92.871000 1 497 1 chr3A.!!$R2 496
9 TraesCS7A01G142100 chr3A 341804134 341804636 502 True 701.000000 701 92.262000 1 490 1 chr3A.!!$R1 489
10 TraesCS7A01G142100 chrUn 342457205 342459298 2093 True 303.000000 496 87.968500 1629 3245 2 chrUn.!!$R2 1616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
875 929 1.368345 CGCGTGCTCCATTCCATCAA 61.368 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2821 3181 0.185901 TCTGCCCAGCAAAGGAAGTT 59.814 50.0 0.0 0.0 38.41 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 175 1.568504 AGAGAATAGGGTTCCGTGCA 58.431 50.000 0.00 0.00 0.00 4.57
227 242 3.957497 ACTTGCCTACAAAACCACAATGA 59.043 39.130 0.00 0.00 34.74 2.57
259 274 4.013728 TGGAAAAGTGCGCCATTAGTATT 58.986 39.130 4.18 0.00 0.00 1.89
340 355 6.348540 GGTCAAAGCTTGGTCAAACATAGTAG 60.349 42.308 0.00 0.00 0.00 2.57
365 380 1.804748 GCACTTTTTACTAGGTGCGCT 59.195 47.619 9.73 0.00 43.91 5.92
435 450 3.508793 ACTATATAATAGTGGCGCACCGT 59.491 43.478 10.83 0.00 39.70 4.83
458 473 6.128661 CGTATGTATAATGCGCCATTAGTGTT 60.129 38.462 4.18 0.00 39.28 3.32
497 512 3.007614 TGTTTTCTAGTAGTGGGTGGAGC 59.992 47.826 0.00 0.00 0.00 4.70
498 513 2.615986 TTCTAGTAGTGGGTGGAGCA 57.384 50.000 0.00 0.00 0.00 4.26
499 514 2.615986 TCTAGTAGTGGGTGGAGCAA 57.384 50.000 0.00 0.00 0.00 3.91
501 516 3.450904 TCTAGTAGTGGGTGGAGCAATT 58.549 45.455 0.00 0.00 0.00 2.32
503 518 5.027460 TCTAGTAGTGGGTGGAGCAATTTA 58.973 41.667 0.00 0.00 0.00 1.40
504 519 4.862641 AGTAGTGGGTGGAGCAATTTAT 57.137 40.909 0.00 0.00 0.00 1.40
505 520 4.526970 AGTAGTGGGTGGAGCAATTTATG 58.473 43.478 0.00 0.00 0.00 1.90
507 522 3.356290 AGTGGGTGGAGCAATTTATGAC 58.644 45.455 0.00 0.00 0.00 3.06
509 524 3.763897 GTGGGTGGAGCAATTTATGACTT 59.236 43.478 0.00 0.00 0.00 3.01
510 525 4.947388 GTGGGTGGAGCAATTTATGACTTA 59.053 41.667 0.00 0.00 0.00 2.24
511 526 5.594317 GTGGGTGGAGCAATTTATGACTTAT 59.406 40.000 0.00 0.00 0.00 1.73
512 527 6.770785 GTGGGTGGAGCAATTTATGACTTATA 59.229 38.462 0.00 0.00 0.00 0.98
516 531 8.903820 GGTGGAGCAATTTATGACTTATAAGTT 58.096 33.333 18.96 7.26 39.88 2.66
520 535 8.237811 AGCAATTTATGACTTATAAGTTGGGG 57.762 34.615 18.96 5.84 43.59 4.96
521 536 7.839200 AGCAATTTATGACTTATAAGTTGGGGT 59.161 33.333 18.96 6.91 43.59 4.95
523 538 9.184523 CAATTTATGACTTATAAGTTGGGGTGA 57.815 33.333 18.96 4.07 41.53 4.02
525 540 7.504926 TTATGACTTATAAGTTGGGGTGACT 57.495 36.000 18.96 0.00 39.88 3.41
527 542 6.938698 TGACTTATAAGTTGGGGTGACTTA 57.061 37.500 18.96 0.00 42.07 2.24
528 543 7.504926 TGACTTATAAGTTGGGGTGACTTAT 57.495 36.000 18.96 12.48 46.52 1.73
529 544 8.612486 TGACTTATAAGTTGGGGTGACTTATA 57.388 34.615 18.96 10.90 44.36 0.98
546 561 7.626144 GACTTATAAGTCGGATCTGTTTAGC 57.374 40.000 25.68 3.19 45.11 3.09
547 562 7.108841 ACTTATAAGTCGGATCTGTTTAGCA 57.891 36.000 12.50 0.00 32.86 3.49
551 566 7.865706 ATAAGTCGGATCTGTTTAGCAAAAT 57.134 32.000 0.42 0.00 0.00 1.82
552 567 8.958119 ATAAGTCGGATCTGTTTAGCAAAATA 57.042 30.769 0.42 0.00 0.00 1.40
553 568 7.681939 AAGTCGGATCTGTTTAGCAAAATAA 57.318 32.000 0.42 0.00 0.00 1.40
554 569 7.681939 AGTCGGATCTGTTTAGCAAAATAAA 57.318 32.000 0.42 0.00 0.00 1.40
555 570 8.281212 AGTCGGATCTGTTTAGCAAAATAAAT 57.719 30.769 0.42 0.00 0.00 1.40
557 572 8.181573 GTCGGATCTGTTTAGCAAAATAAATCA 58.818 33.333 0.42 0.00 0.00 2.57
558 573 8.181573 TCGGATCTGTTTAGCAAAATAAATCAC 58.818 33.333 0.42 0.00 0.00 3.06
559 574 8.184192 CGGATCTGTTTAGCAAAATAAATCACT 58.816 33.333 0.00 0.00 0.00 3.41
560 575 9.860898 GGATCTGTTTAGCAAAATAAATCACTT 57.139 29.630 0.00 0.00 0.00 3.16
588 603 9.672086 TTTCATTTTTCGACTTATAAGTTGGTG 57.328 29.630 25.99 18.04 39.88 4.17
589 604 8.610248 TCATTTTTCGACTTATAAGTTGGTGA 57.390 30.769 25.99 19.41 39.88 4.02
591 606 9.840427 CATTTTTCGACTTATAAGTTGGTGATT 57.160 29.630 25.99 11.06 39.88 2.57
606 621 9.758651 AAGTTGGTGATTTATTTAGAACCAAAC 57.241 29.630 6.65 2.75 46.21 2.93
608 623 9.191995 GTTGGTGATTTATTTAGAACCAAACAG 57.808 33.333 6.65 0.00 46.21 3.16
609 624 7.891561 TGGTGATTTATTTAGAACCAAACAGG 58.108 34.615 0.00 0.00 45.67 4.00
610 625 6.811665 GGTGATTTATTTAGAACCAAACAGGC 59.188 38.462 0.00 0.00 43.14 4.85
611 626 6.811665 GTGATTTATTTAGAACCAAACAGGCC 59.188 38.462 0.00 0.00 43.14 5.19
612 627 6.723977 TGATTTATTTAGAACCAAACAGGCCT 59.276 34.615 0.00 0.00 43.14 5.19
703 718 1.372004 CCAGTGCGAAACCGTACGA 60.372 57.895 18.76 0.00 45.19 3.43
720 735 2.341257 ACGATCGCATGCATATTCCTC 58.659 47.619 19.57 2.15 0.00 3.71
806 857 3.399440 CATCCATGGAGAGTTCCTAGC 57.601 52.381 21.33 0.00 44.36 3.42
875 929 1.368345 CGCGTGCTCCATTCCATCAA 61.368 55.000 0.00 0.00 0.00 2.57
924 979 9.457110 GTAATCGCATCAGAGTATATAAGATGG 57.543 37.037 13.28 7.32 37.23 3.51
931 986 7.839680 TCAGAGTATATAAGATGGTGCAAGA 57.160 36.000 0.00 0.00 0.00 3.02
932 987 8.250143 TCAGAGTATATAAGATGGTGCAAGAA 57.750 34.615 0.00 0.00 0.00 2.52
933 988 8.704668 TCAGAGTATATAAGATGGTGCAAGAAA 58.295 33.333 0.00 0.00 0.00 2.52
934 989 9.499479 CAGAGTATATAAGATGGTGCAAGAAAT 57.501 33.333 0.00 0.00 0.00 2.17
935 990 9.499479 AGAGTATATAAGATGGTGCAAGAAATG 57.501 33.333 0.00 0.00 0.00 2.32
937 992 4.660789 ATAAGATGGTGCAAGAAATGGC 57.339 40.909 0.00 0.00 0.00 4.40
938 993 2.226962 AGATGGTGCAAGAAATGGCT 57.773 45.000 0.00 0.00 0.00 4.75
958 1022 4.233789 GCTTAGATCGATCCTGCTAACTG 58.766 47.826 21.66 4.80 0.00 3.16
983 1047 3.190118 GCTGTGGTTTCTTTCTCCATCAG 59.810 47.826 0.00 0.00 35.55 2.90
985 1049 5.246981 TGTGGTTTCTTTCTCCATCAGAT 57.753 39.130 0.00 0.00 33.68 2.90
988 1052 7.230747 TGTGGTTTCTTTCTCCATCAGATAAA 58.769 34.615 0.00 0.00 33.68 1.40
989 1053 7.174946 TGTGGTTTCTTTCTCCATCAGATAAAC 59.825 37.037 0.00 0.00 32.69 2.01
990 1054 7.391833 GTGGTTTCTTTCTCCATCAGATAAACT 59.608 37.037 0.00 0.00 33.34 2.66
1074 1138 2.443952 ATCCTCGTCCGCATCCCA 60.444 61.111 0.00 0.00 0.00 4.37
1147 1211 2.498941 CGCCTCCTCTCCGGCAATA 61.499 63.158 0.00 0.00 46.62 1.90
1284 1352 2.168054 CGATCGGCGGGAAAGTTTT 58.832 52.632 7.38 0.00 36.03 2.43
1344 1412 3.068691 TGGGACGAGGCGGAGAAG 61.069 66.667 0.00 0.00 0.00 2.85
1364 1486 1.115467 GAAGATGAGGGCGAGGAAGA 58.885 55.000 0.00 0.00 0.00 2.87
1620 1749 3.999603 TGAGGAAGATGAGATCCAGGAA 58.000 45.455 0.00 0.00 38.23 3.36
1632 1761 6.479006 TGAGATCCAGGAAGGCAATTATATG 58.521 40.000 0.00 0.00 37.29 1.78
1713 1850 3.430862 CACATCGGTGGCGTTGGG 61.431 66.667 0.00 0.00 41.45 4.12
1728 1865 2.158755 CGTTGGGAGATTTGGAGCCTAT 60.159 50.000 0.00 0.00 0.00 2.57
1752 1889 0.970937 TCGGAAGGCCTAGTGTCCTG 60.971 60.000 17.35 11.59 32.00 3.86
1765 1902 3.708210 TCCTGGTAGGACAAGCGG 58.292 61.111 0.00 0.00 40.06 5.52
1847 1984 1.589196 GTACGGATCGCCTGACAGC 60.589 63.158 0.00 0.00 0.00 4.40
1904 2223 3.610669 CCTCCTCATCTCGGCGGG 61.611 72.222 7.21 2.41 0.00 6.13
2000 2319 2.035312 AGTAGCGTCGTGGACCCT 59.965 61.111 0.00 0.00 0.00 4.34
2174 2493 2.251893 GAGGAAGTTGTCGAGTAAGCG 58.748 52.381 0.00 0.00 0.00 4.68
2189 2508 5.173312 CGAGTAAGCGGTATAAGTTCACATG 59.827 44.000 0.00 0.00 0.00 3.21
2192 2511 2.936498 AGCGGTATAAGTTCACATGCAC 59.064 45.455 0.00 0.00 0.00 4.57
2208 2527 0.858961 GCACGCGAGATGCATTTGAC 60.859 55.000 15.93 0.00 46.97 3.18
2242 2561 1.021202 CACGAGCTTCAACAACCCAA 58.979 50.000 0.00 0.00 0.00 4.12
2293 2652 8.673626 GTGTTTGATTCACCAACATATGTTAG 57.326 34.615 20.39 15.92 36.32 2.34
2300 2659 4.938832 TCACCAACATATGTTAGGTTTCCG 59.061 41.667 26.65 19.64 37.34 4.30
2350 2709 6.340962 TGAATTCTTCTCCTTGTAACTCGA 57.659 37.500 7.05 0.00 0.00 4.04
2351 2710 6.936279 TGAATTCTTCTCCTTGTAACTCGAT 58.064 36.000 7.05 0.00 0.00 3.59
2352 2711 7.036220 TGAATTCTTCTCCTTGTAACTCGATC 58.964 38.462 7.05 0.00 0.00 3.69
2435 2794 2.239150 AGATCAGCAAGTGAAGCAGGAT 59.761 45.455 0.00 0.00 39.19 3.24
2491 2850 2.485814 GGTGAAGCATGGAAGTTCAGTC 59.514 50.000 5.01 0.00 30.94 3.51
2516 2875 9.853177 TCCAATAATATTTTGGTGTTGGTTTTT 57.147 25.926 19.84 0.00 43.41 1.94
2545 2905 9.739276 TTTGAGTCTTGTCCTATGTTTGATATT 57.261 29.630 0.00 0.00 0.00 1.28
2546 2906 9.739276 TTGAGTCTTGTCCTATGTTTGATATTT 57.261 29.630 0.00 0.00 0.00 1.40
2567 2927 2.846371 GCCTTAGCTGTGGACTGTG 58.154 57.895 10.50 0.00 35.50 3.66
2568 2928 0.674895 GCCTTAGCTGTGGACTGTGG 60.675 60.000 10.50 0.00 35.50 4.17
2569 2929 0.687354 CCTTAGCTGTGGACTGTGGT 59.313 55.000 0.00 0.00 0.00 4.16
2570 2930 1.609061 CCTTAGCTGTGGACTGTGGTG 60.609 57.143 0.00 0.00 0.00 4.17
2571 2931 0.250295 TTAGCTGTGGACTGTGGTGC 60.250 55.000 0.00 0.00 0.00 5.01
2572 2932 2.111999 TAGCTGTGGACTGTGGTGCC 62.112 60.000 0.00 0.00 32.62 5.01
2573 2933 2.510411 CTGTGGACTGTGGTGCCA 59.490 61.111 0.00 0.00 32.62 4.92
2665 3025 3.819337 CAGGGCAAGATATGGTCATGAAG 59.181 47.826 0.00 0.00 0.00 3.02
2671 3031 5.220931 GCAAGATATGGTCATGAAGTTGTCC 60.221 44.000 0.00 0.00 0.00 4.02
2674 3034 2.566833 TGGTCATGAAGTTGTCCAGG 57.433 50.000 0.00 0.00 32.23 4.45
2785 3145 9.898152 TGTGTTATTATCAAATATCAGGTGTGA 57.102 29.630 0.00 0.00 37.02 3.58
2787 3147 9.056005 TGTTATTATCAAATATCAGGTGTGAGC 57.944 33.333 0.00 0.00 35.66 4.26
2788 3148 8.507249 GTTATTATCAAATATCAGGTGTGAGCC 58.493 37.037 0.00 0.00 35.66 4.70
2789 3149 3.281727 TCAAATATCAGGTGTGAGCCC 57.718 47.619 0.00 0.00 35.66 5.19
2790 3150 2.846206 TCAAATATCAGGTGTGAGCCCT 59.154 45.455 0.00 0.00 35.66 5.19
2791 3151 4.037222 TCAAATATCAGGTGTGAGCCCTA 58.963 43.478 0.00 0.00 35.66 3.53
2792 3152 4.660303 TCAAATATCAGGTGTGAGCCCTAT 59.340 41.667 0.00 0.00 35.66 2.57
2793 3153 5.132648 TCAAATATCAGGTGTGAGCCCTATT 59.867 40.000 0.00 0.00 35.66 1.73
2794 3154 6.328934 TCAAATATCAGGTGTGAGCCCTATTA 59.671 38.462 0.00 0.00 35.66 0.98
2795 3155 6.959606 AATATCAGGTGTGAGCCCTATTAT 57.040 37.500 0.00 0.00 35.66 1.28
2796 3156 4.899352 ATCAGGTGTGAGCCCTATTATC 57.101 45.455 0.00 0.00 35.66 1.75
2797 3157 3.928754 TCAGGTGTGAGCCCTATTATCT 58.071 45.455 0.00 0.00 0.00 1.98
2798 3158 4.298626 TCAGGTGTGAGCCCTATTATCTT 58.701 43.478 0.00 0.00 0.00 2.40
2799 3159 4.721776 TCAGGTGTGAGCCCTATTATCTTT 59.278 41.667 0.00 0.00 0.00 2.52
2800 3160 5.191722 TCAGGTGTGAGCCCTATTATCTTTT 59.808 40.000 0.00 0.00 0.00 2.27
2801 3161 6.385759 TCAGGTGTGAGCCCTATTATCTTTTA 59.614 38.462 0.00 0.00 0.00 1.52
2802 3162 7.054124 CAGGTGTGAGCCCTATTATCTTTTAA 58.946 38.462 0.00 0.00 0.00 1.52
2803 3163 7.227512 CAGGTGTGAGCCCTATTATCTTTTAAG 59.772 40.741 0.00 0.00 0.00 1.85
2804 3164 6.017026 GGTGTGAGCCCTATTATCTTTTAAGC 60.017 42.308 0.00 0.00 0.00 3.09
2805 3165 6.768381 GTGTGAGCCCTATTATCTTTTAAGCT 59.232 38.462 0.00 0.00 0.00 3.74
2806 3166 6.767902 TGTGAGCCCTATTATCTTTTAAGCTG 59.232 38.462 0.00 0.00 0.00 4.24
2807 3167 6.992715 GTGAGCCCTATTATCTTTTAAGCTGA 59.007 38.462 0.00 0.00 0.00 4.26
2808 3168 7.172361 GTGAGCCCTATTATCTTTTAAGCTGAG 59.828 40.741 0.00 0.00 0.00 3.35
2809 3169 7.071196 TGAGCCCTATTATCTTTTAAGCTGAGA 59.929 37.037 0.00 0.00 0.00 3.27
2810 3170 7.220740 AGCCCTATTATCTTTTAAGCTGAGAC 58.779 38.462 0.00 0.00 0.00 3.36
2811 3171 7.071824 AGCCCTATTATCTTTTAAGCTGAGACT 59.928 37.037 0.00 0.00 0.00 3.24
2812 3172 7.172361 GCCCTATTATCTTTTAAGCTGAGACTG 59.828 40.741 0.00 0.00 0.00 3.51
2813 3173 7.172361 CCCTATTATCTTTTAAGCTGAGACTGC 59.828 40.741 0.00 0.00 0.00 4.40
2814 3174 7.930865 CCTATTATCTTTTAAGCTGAGACTGCT 59.069 37.037 0.00 0.00 40.24 4.24
2815 3175 9.323985 CTATTATCTTTTAAGCTGAGACTGCTT 57.676 33.333 16.93 16.93 46.97 3.91
2816 3176 7.986085 TTATCTTTTAAGCTGAGACTGCTTT 57.014 32.000 17.68 5.20 44.04 3.51
2817 3177 5.931441 TCTTTTAAGCTGAGACTGCTTTC 57.069 39.130 17.68 0.00 44.04 2.62
2818 3178 5.615289 TCTTTTAAGCTGAGACTGCTTTCT 58.385 37.500 17.68 0.00 44.04 2.52
2819 3179 5.468072 TCTTTTAAGCTGAGACTGCTTTCTG 59.532 40.000 17.68 8.89 44.04 3.02
2820 3180 1.521580 AAGCTGAGACTGCTTTCTGC 58.478 50.000 9.40 0.00 44.04 4.26
2838 3198 2.428834 CAACTTCCTTTGCTGGGCA 58.571 52.632 0.00 0.00 36.47 5.36
2839 3199 0.316204 CAACTTCCTTTGCTGGGCAG 59.684 55.000 0.00 0.00 40.61 4.85
2840 3200 0.185901 AACTTCCTTTGCTGGGCAGA 59.814 50.000 0.00 0.00 40.61 4.26
2841 3201 0.185901 ACTTCCTTTGCTGGGCAGAA 59.814 50.000 0.00 0.00 40.61 3.02
2842 3202 1.203100 ACTTCCTTTGCTGGGCAGAAT 60.203 47.619 0.00 0.00 40.61 2.40
2843 3203 1.203994 CTTCCTTTGCTGGGCAGAATG 59.796 52.381 0.00 0.00 40.61 2.67
2844 3204 0.612732 TCCTTTGCTGGGCAGAATGG 60.613 55.000 0.00 0.00 40.61 3.16
2845 3205 0.901580 CCTTTGCTGGGCAGAATGGT 60.902 55.000 0.00 0.00 40.61 3.55
2846 3206 0.971386 CTTTGCTGGGCAGAATGGTT 59.029 50.000 0.00 0.00 40.61 3.67
2847 3207 1.345415 CTTTGCTGGGCAGAATGGTTT 59.655 47.619 0.00 0.00 40.61 3.27
2848 3208 2.300956 TTGCTGGGCAGAATGGTTTA 57.699 45.000 0.00 0.00 40.61 2.01
2849 3209 2.530460 TGCTGGGCAGAATGGTTTAT 57.470 45.000 0.00 0.00 35.86 1.40
2850 3210 3.660970 TGCTGGGCAGAATGGTTTATA 57.339 42.857 0.00 0.00 35.86 0.98
2851 3211 4.183223 TGCTGGGCAGAATGGTTTATAT 57.817 40.909 0.00 0.00 35.86 0.86
2852 3212 4.144297 TGCTGGGCAGAATGGTTTATATC 58.856 43.478 0.00 0.00 35.86 1.63
2853 3213 4.144297 GCTGGGCAGAATGGTTTATATCA 58.856 43.478 0.00 0.00 35.86 2.15
2854 3214 4.217118 GCTGGGCAGAATGGTTTATATCAG 59.783 45.833 0.00 0.00 35.86 2.90
2855 3215 5.624159 CTGGGCAGAATGGTTTATATCAGA 58.376 41.667 0.00 0.00 35.86 3.27
2856 3216 6.204852 TGGGCAGAATGGTTTATATCAGAT 57.795 37.500 0.00 0.00 35.86 2.90
2857 3217 6.005823 TGGGCAGAATGGTTTATATCAGATG 58.994 40.000 0.00 0.00 35.86 2.90
2858 3218 6.006449 GGGCAGAATGGTTTATATCAGATGT 58.994 40.000 0.00 0.00 35.86 3.06
2859 3219 7.168219 GGGCAGAATGGTTTATATCAGATGTA 58.832 38.462 0.00 0.00 35.86 2.29
2860 3220 7.831193 GGGCAGAATGGTTTATATCAGATGTAT 59.169 37.037 0.00 0.00 35.86 2.29
2861 3221 8.671921 GGCAGAATGGTTTATATCAGATGTATG 58.328 37.037 0.00 0.00 35.86 2.39
2862 3222 8.671921 GCAGAATGGTTTATATCAGATGTATGG 58.328 37.037 0.00 0.00 35.86 2.74
2863 3223 9.948964 CAGAATGGTTTATATCAGATGTATGGA 57.051 33.333 0.00 0.00 0.00 3.41
2865 3225 9.950496 GAATGGTTTATATCAGATGTATGGAGT 57.050 33.333 0.00 0.00 0.00 3.85
2890 3250 4.021719 GCTACTGGGAACAAGTAGTGTGTA 60.022 45.833 11.37 0.00 40.60 2.90
2907 3279 4.393062 GTGTGTATGTACTGATGCAAGCTT 59.607 41.667 0.00 0.00 0.00 3.74
2940 3312 7.693951 GCTGGAATATAAGCTATTTTACATGCG 59.306 37.037 0.00 0.00 36.47 4.73
2947 3319 3.851403 AGCTATTTTACATGCGCGTTTTG 59.149 39.130 8.43 5.72 0.00 2.44
2948 3320 3.849145 GCTATTTTACATGCGCGTTTTGA 59.151 39.130 8.43 0.00 0.00 2.69
2949 3321 4.499040 GCTATTTTACATGCGCGTTTTGAT 59.501 37.500 8.43 0.00 0.00 2.57
3009 3381 5.103601 AGCTACTACTGTAACCAGGTATCCT 60.104 44.000 0.00 0.00 43.36 3.24
3105 7524 8.483307 AAAGAAAGTCAAACTACTTGTCGTAA 57.517 30.769 0.00 0.00 39.62 3.18
3155 7574 6.648192 CCAAGAGATGAACTGGAGAGTATTT 58.352 40.000 0.00 0.00 0.00 1.40
3157 7576 5.669477 AGAGATGAACTGGAGAGTATTTGC 58.331 41.667 0.00 0.00 0.00 3.68
3249 8887 1.135094 CCTCACCCATACATGAGCCT 58.865 55.000 0.00 0.00 40.92 4.58
3250 8888 2.329267 CCTCACCCATACATGAGCCTA 58.671 52.381 0.00 0.00 40.92 3.93
3251 8889 2.301296 CCTCACCCATACATGAGCCTAG 59.699 54.545 0.00 0.00 40.92 3.02
3252 8890 2.301296 CTCACCCATACATGAGCCTAGG 59.699 54.545 3.67 3.67 36.22 3.02
3253 8891 1.349026 CACCCATACATGAGCCTAGGG 59.651 57.143 11.72 4.34 40.66 3.53
3263 8901 2.413765 GCCTAGGGCTCGAGTTCG 59.586 66.667 15.13 0.00 46.69 3.95
3264 8902 2.119655 GCCTAGGGCTCGAGTTCGA 61.120 63.158 15.13 4.00 46.69 3.71
3272 8910 4.841029 TCGAGTTCGAGCGAGTTG 57.159 55.556 0.00 0.00 44.22 3.16
3273 8911 1.947013 TCGAGTTCGAGCGAGTTGT 59.053 52.632 0.00 0.00 44.22 3.32
3274 8912 1.150827 TCGAGTTCGAGCGAGTTGTA 58.849 50.000 0.00 0.00 44.22 2.41
3275 8913 1.128136 TCGAGTTCGAGCGAGTTGTAG 59.872 52.381 0.00 0.00 44.22 2.74
3276 8914 1.136029 CGAGTTCGAGCGAGTTGTAGT 60.136 52.381 0.00 0.00 43.02 2.73
3277 8915 2.664971 CGAGTTCGAGCGAGTTGTAGTT 60.665 50.000 0.00 0.00 43.02 2.24
3278 8916 2.657372 GAGTTCGAGCGAGTTGTAGTTG 59.343 50.000 0.00 0.00 0.00 3.16
3279 8917 1.719780 GTTCGAGCGAGTTGTAGTTGG 59.280 52.381 0.00 0.00 0.00 3.77
3280 8918 0.388134 TCGAGCGAGTTGTAGTTGGC 60.388 55.000 0.00 0.00 0.00 4.52
3281 8919 0.388649 CGAGCGAGTTGTAGTTGGCT 60.389 55.000 0.00 0.00 0.00 4.75
3282 8920 1.351153 GAGCGAGTTGTAGTTGGCTC 58.649 55.000 0.00 0.00 39.91 4.70
3283 8921 0.679505 AGCGAGTTGTAGTTGGCTCA 59.320 50.000 0.00 0.00 0.00 4.26
3284 8922 1.071605 GCGAGTTGTAGTTGGCTCAG 58.928 55.000 0.00 0.00 0.00 3.35
3285 8923 1.071605 CGAGTTGTAGTTGGCTCAGC 58.928 55.000 0.00 0.00 0.00 4.26
3286 8924 1.337260 CGAGTTGTAGTTGGCTCAGCT 60.337 52.381 0.00 0.00 0.00 4.24
3287 8925 2.342179 GAGTTGTAGTTGGCTCAGCTC 58.658 52.381 0.00 0.00 33.81 4.09
3288 8926 1.694150 AGTTGTAGTTGGCTCAGCTCA 59.306 47.619 0.00 0.00 0.00 4.26
3289 8927 2.104792 AGTTGTAGTTGGCTCAGCTCAA 59.895 45.455 0.00 0.00 0.00 3.02
3290 8928 2.169832 TGTAGTTGGCTCAGCTCAAC 57.830 50.000 18.30 18.30 38.78 3.18
3291 8929 1.694150 TGTAGTTGGCTCAGCTCAACT 59.306 47.619 26.67 26.67 44.98 3.16
3292 8930 2.289072 TGTAGTTGGCTCAGCTCAACTC 60.289 50.000 27.06 20.51 43.40 3.01
3293 8931 0.761187 AGTTGGCTCAGCTCAACTCA 59.239 50.000 21.33 0.00 42.04 3.41
3294 8932 1.350351 AGTTGGCTCAGCTCAACTCAT 59.650 47.619 21.33 6.57 42.04 2.90
3295 8933 2.568956 AGTTGGCTCAGCTCAACTCATA 59.431 45.455 21.33 0.00 42.04 2.15
3296 8934 3.199508 AGTTGGCTCAGCTCAACTCATAT 59.800 43.478 21.33 6.01 42.04 1.78
3297 8935 3.920231 TGGCTCAGCTCAACTCATATT 57.080 42.857 0.00 0.00 0.00 1.28
3298 8936 5.104776 AGTTGGCTCAGCTCAACTCATATTA 60.105 40.000 21.33 0.00 42.04 0.98
3299 8937 5.357742 TGGCTCAGCTCAACTCATATTAA 57.642 39.130 0.00 0.00 0.00 1.40
3300 8938 5.744171 TGGCTCAGCTCAACTCATATTAAA 58.256 37.500 0.00 0.00 0.00 1.52
3301 8939 6.179756 TGGCTCAGCTCAACTCATATTAAAA 58.820 36.000 0.00 0.00 0.00 1.52
3302 8940 6.830324 TGGCTCAGCTCAACTCATATTAAAAT 59.170 34.615 0.00 0.00 0.00 1.82
3303 8941 7.340232 TGGCTCAGCTCAACTCATATTAAAATT 59.660 33.333 0.00 0.00 0.00 1.82
3304 8942 7.859875 GGCTCAGCTCAACTCATATTAAAATTC 59.140 37.037 0.00 0.00 0.00 2.17
3305 8943 7.585573 GCTCAGCTCAACTCATATTAAAATTCG 59.414 37.037 0.00 0.00 0.00 3.34
3306 8944 8.716646 TCAGCTCAACTCATATTAAAATTCGA 57.283 30.769 0.00 0.00 0.00 3.71
3307 8945 8.820933 TCAGCTCAACTCATATTAAAATTCGAG 58.179 33.333 0.00 0.00 0.00 4.04
3308 8946 7.585573 CAGCTCAACTCATATTAAAATTCGAGC 59.414 37.037 0.00 0.00 40.91 5.03
3309 8947 6.571520 GCTCAACTCATATTAAAATTCGAGCG 59.428 38.462 0.00 0.00 32.63 5.03
3310 8948 7.516785 GCTCAACTCATATTAAAATTCGAGCGA 60.517 37.037 0.00 0.00 32.63 4.93
3311 8949 7.841486 TCAACTCATATTAAAATTCGAGCGAG 58.159 34.615 0.00 0.00 0.00 5.03
3312 8950 6.216750 ACTCATATTAAAATTCGAGCGAGC 57.783 37.500 0.00 0.00 0.00 5.03
3313 8951 5.986135 ACTCATATTAAAATTCGAGCGAGCT 59.014 36.000 0.00 0.00 0.00 4.09
3314 8952 6.144724 ACTCATATTAAAATTCGAGCGAGCTC 59.855 38.462 14.61 14.61 39.55 4.09
3315 8953 5.983118 TCATATTAAAATTCGAGCGAGCTCA 59.017 36.000 22.81 6.73 42.86 4.26
3316 8954 6.478673 TCATATTAAAATTCGAGCGAGCTCAA 59.521 34.615 22.81 16.09 42.86 3.02
3317 8955 5.545658 ATTAAAATTCGAGCGAGCTCAAA 57.454 34.783 22.81 12.96 42.86 2.69
3318 8956 2.882742 AAATTCGAGCGAGCTCAAAC 57.117 45.000 22.81 2.13 42.86 2.93
3319 8957 2.086054 AATTCGAGCGAGCTCAAACT 57.914 45.000 22.81 7.61 42.86 2.66
3320 8958 1.354040 ATTCGAGCGAGCTCAAACTG 58.646 50.000 22.81 8.02 42.86 3.16
3321 8959 0.313987 TTCGAGCGAGCTCAAACTGA 59.686 50.000 22.81 10.07 42.86 3.41
3322 8960 0.109551 TCGAGCGAGCTCAAACTGAG 60.110 55.000 22.81 6.71 46.90 3.35
3323 8961 0.387878 CGAGCGAGCTCAAACTGAGT 60.388 55.000 22.81 0.00 45.94 3.41
3324 8962 1.135660 CGAGCGAGCTCAAACTGAGTA 60.136 52.381 22.81 0.00 45.94 2.59
3325 8963 2.668556 CGAGCGAGCTCAAACTGAGTAA 60.669 50.000 22.81 0.00 45.94 2.24
3326 8964 3.318017 GAGCGAGCTCAAACTGAGTAAA 58.682 45.455 19.09 0.00 45.94 2.01
3327 8965 3.321497 AGCGAGCTCAAACTGAGTAAAG 58.679 45.455 15.40 0.00 45.94 1.85
3328 8966 2.159774 GCGAGCTCAAACTGAGTAAAGC 60.160 50.000 15.40 5.86 45.94 3.51
3329 8967 3.321497 CGAGCTCAAACTGAGTAAAGCT 58.679 45.455 15.40 13.84 45.94 3.74
3330 8968 3.366422 CGAGCTCAAACTGAGTAAAGCTC 59.634 47.826 23.16 23.16 45.94 4.09
3349 8987 3.390135 CTCAAGGTCGAGCTGTAAAACA 58.610 45.455 19.39 0.00 0.00 2.83
3350 8988 3.997021 CTCAAGGTCGAGCTGTAAAACAT 59.003 43.478 19.39 0.00 0.00 2.71
3351 8989 3.745975 TCAAGGTCGAGCTGTAAAACATG 59.254 43.478 19.39 10.01 0.00 3.21
3352 8990 3.678056 AGGTCGAGCTGTAAAACATGA 57.322 42.857 17.85 0.00 0.00 3.07
3353 8991 3.326747 AGGTCGAGCTGTAAAACATGAC 58.673 45.455 17.85 0.00 0.00 3.06
3354 8992 3.006967 AGGTCGAGCTGTAAAACATGACT 59.993 43.478 17.85 0.00 0.00 3.41
3355 8993 3.368236 GGTCGAGCTGTAAAACATGACTC 59.632 47.826 7.51 0.00 0.00 3.36
3356 8994 3.059570 GTCGAGCTGTAAAACATGACTCG 59.940 47.826 15.42 15.42 45.02 4.18
3357 8995 2.987149 CGAGCTGTAAAACATGACTCGT 59.013 45.455 0.00 0.00 40.33 4.18
3358 8996 3.181540 CGAGCTGTAAAACATGACTCGTG 60.182 47.826 0.00 0.00 40.33 4.35
3359 8997 2.480419 AGCTGTAAAACATGACTCGTGC 59.520 45.455 0.00 0.00 0.00 5.34
3360 8998 2.480419 GCTGTAAAACATGACTCGTGCT 59.520 45.455 0.00 0.00 0.00 4.40
3361 8999 3.423645 GCTGTAAAACATGACTCGTGCTC 60.424 47.826 0.00 0.00 0.00 4.26
3362 9000 3.723260 TGTAAAACATGACTCGTGCTCA 58.277 40.909 0.00 0.00 0.00 4.26
3363 9001 3.740832 TGTAAAACATGACTCGTGCTCAG 59.259 43.478 0.00 0.00 0.00 3.35
3364 9002 1.151668 AAACATGACTCGTGCTCAGC 58.848 50.000 0.00 0.00 0.00 4.26
3365 9003 0.319728 AACATGACTCGTGCTCAGCT 59.680 50.000 0.00 0.00 0.00 4.24
3366 9004 0.319728 ACATGACTCGTGCTCAGCTT 59.680 50.000 0.00 0.00 0.00 3.74
3367 9005 0.720027 CATGACTCGTGCTCAGCTTG 59.280 55.000 0.00 0.00 0.00 4.01
3368 9006 0.319728 ATGACTCGTGCTCAGCTTGT 59.680 50.000 0.00 0.00 0.00 3.16
3369 9007 0.958822 TGACTCGTGCTCAGCTTGTA 59.041 50.000 0.00 0.00 0.00 2.41
3370 9008 1.339929 TGACTCGTGCTCAGCTTGTAA 59.660 47.619 0.00 0.00 0.00 2.41
3371 9009 1.721926 GACTCGTGCTCAGCTTGTAAC 59.278 52.381 0.00 0.00 0.00 2.50
3372 9010 0.710567 CTCGTGCTCAGCTTGTAACG 59.289 55.000 0.00 0.00 0.00 3.18
3373 9011 0.312729 TCGTGCTCAGCTTGTAACGA 59.687 50.000 5.13 5.13 37.68 3.85
3374 9012 1.067846 TCGTGCTCAGCTTGTAACGAT 60.068 47.619 5.13 0.00 35.35 3.73
3375 9013 1.726791 CGTGCTCAGCTTGTAACGATT 59.273 47.619 0.00 0.00 33.03 3.34
3376 9014 2.157668 CGTGCTCAGCTTGTAACGATTT 59.842 45.455 0.00 0.00 33.03 2.17
3377 9015 3.722082 CGTGCTCAGCTTGTAACGATTTC 60.722 47.826 0.00 0.00 33.03 2.17
3378 9016 2.411748 TGCTCAGCTTGTAACGATTTCG 59.588 45.455 0.00 0.00 46.33 3.46
3379 9017 2.222819 GCTCAGCTTGTAACGATTTCGG 60.223 50.000 4.84 0.00 44.95 4.30
3380 9018 2.993899 CTCAGCTTGTAACGATTTCGGT 59.006 45.455 4.84 0.00 44.95 4.69
3381 9019 2.991190 TCAGCTTGTAACGATTTCGGTC 59.009 45.455 4.84 0.00 44.95 4.79
3382 9020 1.990563 AGCTTGTAACGATTTCGGTCG 59.009 47.619 4.84 4.64 46.56 4.79
3383 9021 1.987770 GCTTGTAACGATTTCGGTCGA 59.012 47.619 11.60 0.00 44.06 4.20
3384 9022 2.601763 GCTTGTAACGATTTCGGTCGAT 59.398 45.455 11.60 3.93 44.06 3.59
3385 9023 3.301643 GCTTGTAACGATTTCGGTCGATC 60.302 47.826 11.60 0.00 44.06 3.69
3386 9024 3.770263 TGTAACGATTTCGGTCGATCT 57.230 42.857 11.60 1.01 44.06 2.75
3387 9025 3.688272 TGTAACGATTTCGGTCGATCTC 58.312 45.455 11.60 0.00 44.06 2.75
3388 9026 1.823828 AACGATTTCGGTCGATCTCG 58.176 50.000 17.32 17.32 44.06 4.04
3389 9027 1.012086 ACGATTTCGGTCGATCTCGA 58.988 50.000 22.40 8.00 44.06 4.04
3390 9028 1.003759 ACGATTTCGGTCGATCTCGAG 60.004 52.381 22.40 5.93 45.32 4.04
3391 9029 3.568501 ACGATTTCGGTCGATCTCGAGT 61.569 50.000 22.40 0.00 45.32 4.18
3392 9030 5.022100 ACGATTTCGGTCGATCTCGAGTT 62.022 47.826 22.40 3.51 45.32 3.01
3393 9031 5.735023 ACGATTTCGGTCGATCTCGAGTTA 61.735 45.833 22.40 0.00 45.32 2.24
3394 9032 7.465511 ACGATTTCGGTCGATCTCGAGTTAG 62.466 48.000 22.40 4.72 45.32 2.34
3409 9047 5.100259 TCGAGTTAGTTTCGAGCTAAATGG 58.900 41.667 13.72 12.70 41.68 3.16
3410 9048 5.100259 CGAGTTAGTTTCGAGCTAAATGGA 58.900 41.667 13.72 0.00 40.36 3.41
3411 9049 5.575606 CGAGTTAGTTTCGAGCTAAATGGAA 59.424 40.000 13.72 0.00 40.36 3.53
3412 9050 6.255887 CGAGTTAGTTTCGAGCTAAATGGAAT 59.744 38.462 13.72 0.00 40.36 3.01
3413 9051 7.434307 CGAGTTAGTTTCGAGCTAAATGGAATA 59.566 37.037 13.72 0.00 40.36 1.75
3414 9052 8.649973 AGTTAGTTTCGAGCTAAATGGAATAG 57.350 34.615 11.45 0.00 31.22 1.73
3415 9053 8.258708 AGTTAGTTTCGAGCTAAATGGAATAGT 58.741 33.333 11.45 0.00 31.22 2.12
3416 9054 9.525409 GTTAGTTTCGAGCTAAATGGAATAGTA 57.475 33.333 11.45 0.00 31.22 1.82
3419 9057 9.444600 AGTTTCGAGCTAAATGGAATAGTAAAA 57.555 29.630 0.00 0.00 0.00 1.52
3422 9060 9.444600 TTCGAGCTAAATGGAATAGTAAAAACT 57.555 29.630 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
121 122 4.901123 TCACCCCACGCACACACG 62.901 66.667 0.00 0.00 39.50 4.49
164 175 3.788142 ACCATCTCTCTCCTCTCTCTCTT 59.212 47.826 0.00 0.00 0.00 2.85
209 224 2.920647 GCGTCATTGTGGTTTTGTAGGC 60.921 50.000 0.00 0.00 0.00 3.93
227 242 1.896660 ACTTTTCCATGCGGTGCGT 60.897 52.632 0.00 0.00 0.00 5.24
259 274 4.499526 CCTGATGCGCCATTGCTATTTTTA 60.500 41.667 4.18 0.00 35.36 1.52
340 355 2.095919 CACCTAGTAAAAAGTGCGCCAC 60.096 50.000 4.18 3.02 34.10 5.01
435 450 7.737972 AAACACTAATGGCGCATTATACATA 57.262 32.000 10.83 0.00 36.03 2.29
474 489 4.323562 GCTCCACCCACTACTAGAAAACAT 60.324 45.833 0.00 0.00 0.00 2.71
497 512 9.184523 TCACCCCAACTTATAAGTCATAAATTG 57.815 33.333 18.28 10.70 38.57 2.32
498 513 9.185680 GTCACCCCAACTTATAAGTCATAAATT 57.814 33.333 18.28 0.00 38.57 1.82
499 514 8.557450 AGTCACCCCAACTTATAAGTCATAAAT 58.443 33.333 18.28 0.00 38.57 1.40
501 516 7.504926 AGTCACCCCAACTTATAAGTCATAA 57.495 36.000 18.28 0.00 38.57 1.90
503 518 6.388619 AAGTCACCCCAACTTATAAGTCAT 57.611 37.500 18.28 1.19 38.57 3.06
504 519 5.836024 AAGTCACCCCAACTTATAAGTCA 57.164 39.130 18.28 0.00 38.57 3.41
523 538 7.108841 TGCTAAACAGATCCGACTTATAAGT 57.891 36.000 18.05 18.05 43.16 2.24
525 540 8.780846 TTTTGCTAAACAGATCCGACTTATAA 57.219 30.769 0.00 0.00 0.00 0.98
527 542 7.865706 ATTTTGCTAAACAGATCCGACTTAT 57.134 32.000 0.00 0.00 0.00 1.73
528 543 8.780846 TTATTTTGCTAAACAGATCCGACTTA 57.219 30.769 0.00 0.00 0.00 2.24
529 544 7.681939 TTATTTTGCTAAACAGATCCGACTT 57.318 32.000 0.00 0.00 0.00 3.01
530 545 7.681939 TTTATTTTGCTAAACAGATCCGACT 57.318 32.000 0.00 0.00 0.00 4.18
531 546 8.181573 TGATTTATTTTGCTAAACAGATCCGAC 58.818 33.333 0.00 0.00 0.00 4.79
533 548 8.184192 AGTGATTTATTTTGCTAAACAGATCCG 58.816 33.333 0.00 0.00 0.00 4.18
534 549 9.860898 AAGTGATTTATTTTGCTAAACAGATCC 57.139 29.630 0.00 0.00 0.00 3.36
562 577 9.672086 CACCAACTTATAAGTCGAAAAATGAAA 57.328 29.630 18.28 0.00 38.57 2.69
563 578 9.058174 TCACCAACTTATAAGTCGAAAAATGAA 57.942 29.630 18.28 0.00 38.57 2.57
564 579 8.610248 TCACCAACTTATAAGTCGAAAAATGA 57.390 30.769 18.28 11.87 38.57 2.57
565 580 9.840427 AATCACCAACTTATAAGTCGAAAAATG 57.160 29.630 18.28 10.70 38.57 2.32
583 598 8.364142 CCTGTTTGGTTCTAAATAAATCACCAA 58.636 33.333 0.00 0.00 41.48 3.67
584 599 7.524698 GCCTGTTTGGTTCTAAATAAATCACCA 60.525 37.037 0.00 0.00 38.35 4.17
585 600 6.811665 GCCTGTTTGGTTCTAAATAAATCACC 59.188 38.462 0.00 0.00 38.35 4.02
586 601 6.811665 GGCCTGTTTGGTTCTAAATAAATCAC 59.188 38.462 0.00 0.00 38.35 3.06
587 602 6.723977 AGGCCTGTTTGGTTCTAAATAAATCA 59.276 34.615 3.11 0.00 38.35 2.57
588 603 7.170393 AGGCCTGTTTGGTTCTAAATAAATC 57.830 36.000 3.11 0.00 38.35 2.17
589 604 8.528643 GTTAGGCCTGTTTGGTTCTAAATAAAT 58.471 33.333 17.99 0.00 36.37 1.40
591 606 7.175990 CAGTTAGGCCTGTTTGGTTCTAAATAA 59.824 37.037 17.99 0.00 36.37 1.40
592 607 6.657541 CAGTTAGGCCTGTTTGGTTCTAAATA 59.342 38.462 17.99 0.00 36.37 1.40
595 610 4.103469 TCAGTTAGGCCTGTTTGGTTCTAA 59.897 41.667 17.99 0.00 38.35 2.10
596 611 3.649023 TCAGTTAGGCCTGTTTGGTTCTA 59.351 43.478 17.99 0.00 38.35 2.10
597 612 2.441750 TCAGTTAGGCCTGTTTGGTTCT 59.558 45.455 17.99 0.00 38.35 3.01
598 613 2.858745 TCAGTTAGGCCTGTTTGGTTC 58.141 47.619 17.99 0.00 38.35 3.62
600 615 2.092103 TGTTCAGTTAGGCCTGTTTGGT 60.092 45.455 17.99 0.00 38.35 3.67
601 616 2.554032 CTGTTCAGTTAGGCCTGTTTGG 59.446 50.000 17.99 0.74 39.35 3.28
602 617 3.251004 GTCTGTTCAGTTAGGCCTGTTTG 59.749 47.826 17.99 10.69 34.02 2.93
603 618 3.477530 GTCTGTTCAGTTAGGCCTGTTT 58.522 45.455 17.99 0.00 34.02 2.83
604 619 2.548067 CGTCTGTTCAGTTAGGCCTGTT 60.548 50.000 17.99 0.00 34.02 3.16
605 620 1.000955 CGTCTGTTCAGTTAGGCCTGT 59.999 52.381 17.99 0.00 34.02 4.00
606 621 1.673033 CCGTCTGTTCAGTTAGGCCTG 60.673 57.143 17.99 0.00 0.00 4.85
608 623 0.391263 CCCGTCTGTTCAGTTAGGCC 60.391 60.000 0.00 0.00 0.00 5.19
609 624 0.606604 TCCCGTCTGTTCAGTTAGGC 59.393 55.000 0.00 0.00 0.00 3.93
610 625 1.067071 GGTCCCGTCTGTTCAGTTAGG 60.067 57.143 0.00 2.80 0.00 2.69
611 626 1.893801 AGGTCCCGTCTGTTCAGTTAG 59.106 52.381 0.00 0.00 0.00 2.34
612 627 1.616865 CAGGTCCCGTCTGTTCAGTTA 59.383 52.381 0.00 0.00 0.00 2.24
703 718 2.289010 TGTCGAGGAATATGCATGCGAT 60.289 45.455 14.09 10.25 0.00 4.58
720 735 4.380678 TCTCGTTCGTACAAGAATTTGTCG 59.619 41.667 0.00 2.04 44.00 4.35
785 800 2.038295 GCTAGGAACTCTCCATGGATGG 59.962 54.545 16.63 13.32 45.24 3.51
835 888 3.383761 GTGCTCAGTTCCCAAACAATTG 58.616 45.455 3.24 3.24 37.88 2.32
924 979 3.623060 TCGATCTAAGCCATTTCTTGCAC 59.377 43.478 0.00 0.00 0.00 4.57
931 986 3.072184 AGCAGGATCGATCTAAGCCATTT 59.928 43.478 23.96 7.84 0.00 2.32
932 987 2.636893 AGCAGGATCGATCTAAGCCATT 59.363 45.455 23.96 8.14 0.00 3.16
933 988 2.255406 AGCAGGATCGATCTAAGCCAT 58.745 47.619 23.96 8.75 0.00 4.40
934 989 1.709578 AGCAGGATCGATCTAAGCCA 58.290 50.000 23.96 0.00 0.00 4.75
935 990 3.257127 AGTTAGCAGGATCGATCTAAGCC 59.743 47.826 23.96 8.62 0.00 4.35
937 992 5.446143 ACAGTTAGCAGGATCGATCTAAG 57.554 43.478 23.96 14.86 0.00 2.18
938 993 4.023963 CGACAGTTAGCAGGATCGATCTAA 60.024 45.833 23.96 12.22 0.00 2.10
958 1022 1.531578 GGAGAAAGAAACCACAGCGAC 59.468 52.381 0.00 0.00 0.00 5.19
983 1047 5.036737 CCATCATGGTCGCAAAAGTTTATC 58.963 41.667 0.00 0.00 31.35 1.75
985 1049 3.366883 GCCATCATGGTCGCAAAAGTTTA 60.367 43.478 5.31 0.00 40.46 2.01
988 1052 0.527565 GCCATCATGGTCGCAAAAGT 59.472 50.000 5.31 0.00 40.46 2.66
989 1053 0.523968 CGCCATCATGGTCGCAAAAG 60.524 55.000 5.31 0.00 40.46 2.27
990 1054 1.505807 CGCCATCATGGTCGCAAAA 59.494 52.632 5.31 0.00 40.46 2.44
1284 1352 2.970379 ATGGCGGCAGTCCATCACA 61.970 57.895 19.29 0.00 40.08 3.58
1344 1412 0.105778 CTTCCTCGCCCTCATCTTCC 59.894 60.000 0.00 0.00 0.00 3.46
1364 1486 6.820205 TCTAAATCTCCCTCCTCCATATCAT 58.180 40.000 0.00 0.00 0.00 2.45
1620 1749 4.581824 CACACTTGGCTCATATAATTGCCT 59.418 41.667 12.38 0.00 45.11 4.75
1638 1769 3.828921 TGAGTATATAGACGCCCACACT 58.171 45.455 0.00 0.00 0.00 3.55
1713 1850 3.385577 GACGACATAGGCTCCAAATCTC 58.614 50.000 0.00 0.00 0.00 2.75
1728 1865 1.303888 ACTAGGCCTTCCGACGACA 60.304 57.895 12.58 0.00 37.47 4.35
1765 1902 1.891616 GACGAAGGAGGAGGTGGAC 59.108 63.158 0.00 0.00 0.00 4.02
1847 1984 2.112998 ACATCCCTGGCAAATCAATGG 58.887 47.619 0.00 0.00 0.00 3.16
1904 2223 2.985847 GCCCAAGCCCACTGTCAC 60.986 66.667 0.00 0.00 0.00 3.67
2000 2319 5.186021 GTCTTGAGGTCCATTTCTCTGAGTA 59.814 44.000 4.32 0.00 0.00 2.59
2174 2493 2.285602 CGCGTGCATGTGAACTTATACC 60.286 50.000 14.42 0.00 0.00 2.73
2189 2508 0.858961 GTCAAATGCATCTCGCGTGC 60.859 55.000 12.75 12.75 46.97 5.34
2192 2511 1.527696 GTTGTCAAATGCATCTCGCG 58.472 50.000 0.00 0.00 46.97 5.87
2300 2659 7.193377 TGTTAAACTTCACGATTTCCCTAAC 57.807 36.000 0.00 0.00 0.00 2.34
2350 2709 3.632145 AGCAAACAGTTTTGAAGGACGAT 59.368 39.130 0.00 0.00 44.38 3.73
2351 2710 3.013921 AGCAAACAGTTTTGAAGGACGA 58.986 40.909 0.00 0.00 44.38 4.20
2352 2711 3.420839 AGCAAACAGTTTTGAAGGACG 57.579 42.857 0.00 0.00 44.38 4.79
2435 2794 1.528076 AAACTGCCACATCACCGCA 60.528 52.632 0.00 0.00 0.00 5.69
2437 2796 0.950836 TTCAAACTGCCACATCACCG 59.049 50.000 0.00 0.00 0.00 4.94
2516 2875 9.739276 ATCAAACATAGGACAAGACTCAAAATA 57.261 29.630 0.00 0.00 0.00 1.40
2562 2922 1.523711 CTTCACGTGGCACCACAGT 60.524 57.895 17.00 14.36 46.47 3.55
2563 2923 2.896801 GCTTCACGTGGCACCACAG 61.897 63.158 17.00 13.77 46.47 3.66
2565 2925 4.012895 CGCTTCACGTGGCACCAC 62.013 66.667 17.00 9.88 43.01 4.16
2645 3005 3.825328 ACTTCATGACCATATCTTGCCC 58.175 45.455 0.00 0.00 33.44 5.36
2665 3025 4.058817 CAAGAGTACAAGACCTGGACAAC 58.941 47.826 0.00 0.00 42.01 3.32
2671 3031 4.608948 AGGAACAAGAGTACAAGACCTG 57.391 45.455 0.00 0.00 0.00 4.00
2674 3034 5.602628 ACTCAAGGAACAAGAGTACAAGAC 58.397 41.667 0.00 0.00 41.57 3.01
2741 3101 1.963515 ACAACAGGAAACATTCTGCCC 59.036 47.619 0.00 0.00 34.57 5.36
2775 3135 4.497516 AGATAATAGGGCTCACACCTGAT 58.502 43.478 0.00 0.00 39.12 2.90
2776 3136 3.928754 AGATAATAGGGCTCACACCTGA 58.071 45.455 0.00 0.00 39.12 3.86
2777 3137 4.696479 AAGATAATAGGGCTCACACCTG 57.304 45.455 0.00 0.00 39.12 4.00
2778 3138 5.717119 AAAAGATAATAGGGCTCACACCT 57.283 39.130 0.00 0.00 42.15 4.00
2779 3139 6.017026 GCTTAAAAGATAATAGGGCTCACACC 60.017 42.308 0.00 0.00 0.00 4.16
2780 3140 6.768381 AGCTTAAAAGATAATAGGGCTCACAC 59.232 38.462 0.00 0.00 0.00 3.82
2781 3141 6.767902 CAGCTTAAAAGATAATAGGGCTCACA 59.232 38.462 0.00 0.00 0.00 3.58
2782 3142 6.992715 TCAGCTTAAAAGATAATAGGGCTCAC 59.007 38.462 0.00 0.00 0.00 3.51
2783 3143 7.071196 TCTCAGCTTAAAAGATAATAGGGCTCA 59.929 37.037 0.00 0.00 0.00 4.26
2784 3144 7.386573 GTCTCAGCTTAAAAGATAATAGGGCTC 59.613 40.741 0.00 0.00 0.00 4.70
2785 3145 7.071824 AGTCTCAGCTTAAAAGATAATAGGGCT 59.928 37.037 0.00 0.00 0.00 5.19
2786 3146 7.172361 CAGTCTCAGCTTAAAAGATAATAGGGC 59.828 40.741 0.00 0.00 0.00 5.19
2787 3147 7.172361 GCAGTCTCAGCTTAAAAGATAATAGGG 59.828 40.741 0.00 0.00 0.00 3.53
2788 3148 7.930865 AGCAGTCTCAGCTTAAAAGATAATAGG 59.069 37.037 0.00 0.00 39.87 2.57
2789 3149 8.885494 AGCAGTCTCAGCTTAAAAGATAATAG 57.115 34.615 0.00 0.00 39.87 1.73
2802 3162 3.230115 GCAGAAAGCAGTCTCAGCT 57.770 52.632 0.00 0.00 45.97 4.24
2820 3180 0.316204 CTGCCCAGCAAAGGAAGTTG 59.684 55.000 0.00 0.00 38.41 3.16
2821 3181 0.185901 TCTGCCCAGCAAAGGAAGTT 59.814 50.000 0.00 0.00 38.41 2.66
2822 3182 0.185901 TTCTGCCCAGCAAAGGAAGT 59.814 50.000 0.00 0.00 38.41 3.01
2823 3183 1.203994 CATTCTGCCCAGCAAAGGAAG 59.796 52.381 0.00 0.00 38.41 3.46
2824 3184 1.259609 CATTCTGCCCAGCAAAGGAA 58.740 50.000 0.00 0.00 38.41 3.36
2825 3185 0.612732 CCATTCTGCCCAGCAAAGGA 60.613 55.000 0.00 0.00 38.41 3.36
2826 3186 0.901580 ACCATTCTGCCCAGCAAAGG 60.902 55.000 0.00 0.00 38.41 3.11
2827 3187 0.971386 AACCATTCTGCCCAGCAAAG 59.029 50.000 0.00 0.00 38.41 2.77
2828 3188 1.422531 AAACCATTCTGCCCAGCAAA 58.577 45.000 0.00 0.00 38.41 3.68
2829 3189 2.300956 TAAACCATTCTGCCCAGCAA 57.699 45.000 0.00 0.00 38.41 3.91
2830 3190 2.530460 ATAAACCATTCTGCCCAGCA 57.470 45.000 0.00 0.00 36.92 4.41
2831 3191 4.144297 TGATATAAACCATTCTGCCCAGC 58.856 43.478 0.00 0.00 0.00 4.85
2832 3192 5.624159 TCTGATATAAACCATTCTGCCCAG 58.376 41.667 0.00 0.00 0.00 4.45
2833 3193 5.645056 TCTGATATAAACCATTCTGCCCA 57.355 39.130 0.00 0.00 0.00 5.36
2834 3194 6.006449 ACATCTGATATAAACCATTCTGCCC 58.994 40.000 0.00 0.00 0.00 5.36
2835 3195 8.671921 CATACATCTGATATAAACCATTCTGCC 58.328 37.037 0.00 0.00 0.00 4.85
2836 3196 8.671921 CCATACATCTGATATAAACCATTCTGC 58.328 37.037 0.00 0.00 0.00 4.26
2837 3197 9.948964 TCCATACATCTGATATAAACCATTCTG 57.051 33.333 0.00 0.00 0.00 3.02
2839 3199 9.950496 ACTCCATACATCTGATATAAACCATTC 57.050 33.333 0.00 0.00 0.00 2.67
2842 3202 8.531982 GCTACTCCATACATCTGATATAAACCA 58.468 37.037 0.00 0.00 0.00 3.67
2843 3203 8.754080 AGCTACTCCATACATCTGATATAAACC 58.246 37.037 0.00 0.00 0.00 3.27
2847 3207 9.620259 CAGTAGCTACTCCATACATCTGATATA 57.380 37.037 23.68 0.00 33.46 0.86
2848 3208 7.559533 CCAGTAGCTACTCCATACATCTGATAT 59.440 40.741 23.68 0.00 33.46 1.63
2849 3209 6.887002 CCAGTAGCTACTCCATACATCTGATA 59.113 42.308 23.68 0.00 33.46 2.15
2850 3210 5.714333 CCAGTAGCTACTCCATACATCTGAT 59.286 44.000 23.68 0.00 33.46 2.90
2851 3211 5.073428 CCAGTAGCTACTCCATACATCTGA 58.927 45.833 23.68 0.00 33.46 3.27
2852 3212 4.219507 CCCAGTAGCTACTCCATACATCTG 59.780 50.000 23.68 9.18 33.46 2.90
2853 3213 4.106502 TCCCAGTAGCTACTCCATACATCT 59.893 45.833 23.68 0.00 33.46 2.90
2854 3214 4.408276 TCCCAGTAGCTACTCCATACATC 58.592 47.826 23.68 0.00 33.46 3.06
2855 3215 4.471078 TCCCAGTAGCTACTCCATACAT 57.529 45.455 23.68 0.00 33.46 2.29
2856 3216 3.958798 GTTCCCAGTAGCTACTCCATACA 59.041 47.826 23.68 3.39 33.46 2.29
2857 3217 3.958798 TGTTCCCAGTAGCTACTCCATAC 59.041 47.826 23.68 17.97 33.46 2.39
2858 3218 4.259933 TGTTCCCAGTAGCTACTCCATA 57.740 45.455 23.68 7.00 33.46 2.74
2859 3219 3.116096 TGTTCCCAGTAGCTACTCCAT 57.884 47.619 23.68 0.00 33.46 3.41
2860 3220 2.615986 TGTTCCCAGTAGCTACTCCA 57.384 50.000 23.68 11.97 33.46 3.86
2861 3221 2.832733 ACTTGTTCCCAGTAGCTACTCC 59.167 50.000 23.68 9.69 33.46 3.85
2862 3222 4.705991 ACTACTTGTTCCCAGTAGCTACTC 59.294 45.833 23.68 12.50 39.12 2.59
2863 3223 4.463186 CACTACTTGTTCCCAGTAGCTACT 59.537 45.833 20.95 20.95 39.12 2.57
2864 3224 4.220163 ACACTACTTGTTCCCAGTAGCTAC 59.780 45.833 16.43 16.43 39.12 3.58
2865 3225 4.219944 CACACTACTTGTTCCCAGTAGCTA 59.780 45.833 6.96 0.00 39.12 3.32
2890 3250 6.532657 GCAAAATTAAGCTTGCATCAGTACAT 59.467 34.615 9.86 0.00 45.81 2.29
2921 3293 6.533819 AACGCGCATGTAAAATAGCTTATA 57.466 33.333 5.73 0.00 0.00 0.98
3009 3381 2.062636 AGGTAGCCAAACTTTCAGGGA 58.937 47.619 0.00 0.00 0.00 4.20
3077 3452 7.094933 ACGACAAGTAGTTTGACTTTCTTTTGT 60.095 33.333 0.00 0.00 37.57 2.83
3078 3453 7.241376 ACGACAAGTAGTTTGACTTTCTTTTG 58.759 34.615 0.00 0.00 37.57 2.44
3137 7556 6.500684 TTTGCAAATACTCTCCAGTTCATC 57.499 37.500 8.05 0.00 33.62 2.92
3168 7587 3.938289 AGTACTTTCCTCTTCGTGTCC 57.062 47.619 0.00 0.00 0.00 4.02
3178 7597 5.656859 AGTTTTTCTTGCCAAGTACTTTCCT 59.343 36.000 5.07 0.00 0.00 3.36
3182 8819 4.159506 TGCAGTTTTTCTTGCCAAGTACTT 59.840 37.500 1.12 1.12 0.00 2.24
3256 8894 1.136029 ACTACAACTCGCTCGAACTCG 60.136 52.381 0.00 0.00 41.45 4.18
3257 8895 2.615489 ACTACAACTCGCTCGAACTC 57.385 50.000 0.00 0.00 0.00 3.01
3258 8896 2.607282 CCAACTACAACTCGCTCGAACT 60.607 50.000 0.00 0.00 0.00 3.01
3259 8897 1.719780 CCAACTACAACTCGCTCGAAC 59.280 52.381 0.00 0.00 0.00 3.95
3260 8898 1.933500 GCCAACTACAACTCGCTCGAA 60.934 52.381 0.00 0.00 0.00 3.71
3261 8899 0.388134 GCCAACTACAACTCGCTCGA 60.388 55.000 0.00 0.00 0.00 4.04
3262 8900 0.388649 AGCCAACTACAACTCGCTCG 60.389 55.000 0.00 0.00 0.00 5.03
3263 8901 1.336887 TGAGCCAACTACAACTCGCTC 60.337 52.381 0.00 0.00 42.38 5.03
3264 8902 0.679505 TGAGCCAACTACAACTCGCT 59.320 50.000 0.00 0.00 31.64 4.93
3265 8903 1.071605 CTGAGCCAACTACAACTCGC 58.928 55.000 0.00 0.00 31.64 5.03
3266 8904 1.071605 GCTGAGCCAACTACAACTCG 58.928 55.000 0.00 0.00 31.64 4.18
3267 8905 2.289072 TGAGCTGAGCCAACTACAACTC 60.289 50.000 0.00 0.00 0.00 3.01
3268 8906 1.694150 TGAGCTGAGCCAACTACAACT 59.306 47.619 0.00 0.00 0.00 3.16
3269 8907 2.169832 TGAGCTGAGCCAACTACAAC 57.830 50.000 0.00 0.00 0.00 3.32
3270 8908 2.104792 AGTTGAGCTGAGCCAACTACAA 59.895 45.455 27.87 12.59 43.02 2.41
3271 8909 1.694150 AGTTGAGCTGAGCCAACTACA 59.306 47.619 27.87 8.21 43.02 2.74
3272 8910 2.289072 TGAGTTGAGCTGAGCCAACTAC 60.289 50.000 28.54 23.10 43.97 2.73
3273 8911 1.970640 TGAGTTGAGCTGAGCCAACTA 59.029 47.619 28.54 18.88 43.97 2.24
3274 8912 0.761187 TGAGTTGAGCTGAGCCAACT 59.239 50.000 28.74 28.74 45.33 3.16
3275 8913 1.818642 ATGAGTTGAGCTGAGCCAAC 58.181 50.000 22.65 22.65 38.78 3.77
3276 8914 3.920231 ATATGAGTTGAGCTGAGCCAA 57.080 42.857 0.00 2.22 0.00 4.52
3277 8915 3.920231 AATATGAGTTGAGCTGAGCCA 57.080 42.857 0.00 0.00 0.00 4.75
3278 8916 6.683974 TTTTAATATGAGTTGAGCTGAGCC 57.316 37.500 0.00 0.00 0.00 4.70
3279 8917 7.585573 CGAATTTTAATATGAGTTGAGCTGAGC 59.414 37.037 0.00 0.00 0.00 4.26
3280 8918 8.820933 TCGAATTTTAATATGAGTTGAGCTGAG 58.179 33.333 0.00 0.00 0.00 3.35
3281 8919 8.716646 TCGAATTTTAATATGAGTTGAGCTGA 57.283 30.769 0.00 0.00 0.00 4.26
3282 8920 7.585573 GCTCGAATTTTAATATGAGTTGAGCTG 59.414 37.037 0.00 0.00 40.43 4.24
3283 8921 7.517417 CGCTCGAATTTTAATATGAGTTGAGCT 60.517 37.037 12.59 0.00 41.18 4.09
3284 8922 6.571520 CGCTCGAATTTTAATATGAGTTGAGC 59.428 38.462 7.65 7.65 40.25 4.26
3285 8923 7.841486 TCGCTCGAATTTTAATATGAGTTGAG 58.159 34.615 0.00 0.00 0.00 3.02
3286 8924 7.516785 GCTCGCTCGAATTTTAATATGAGTTGA 60.517 37.037 0.00 0.00 0.00 3.18
3287 8925 6.571520 GCTCGCTCGAATTTTAATATGAGTTG 59.428 38.462 0.00 0.00 0.00 3.16
3288 8926 6.480320 AGCTCGCTCGAATTTTAATATGAGTT 59.520 34.615 0.00 0.00 0.00 3.01
3289 8927 5.986135 AGCTCGCTCGAATTTTAATATGAGT 59.014 36.000 0.00 0.00 0.00 3.41
3290 8928 6.144563 TGAGCTCGCTCGAATTTTAATATGAG 59.855 38.462 9.64 0.00 45.48 2.90
3291 8929 5.983118 TGAGCTCGCTCGAATTTTAATATGA 59.017 36.000 9.64 0.00 45.48 2.15
3292 8930 6.215477 TGAGCTCGCTCGAATTTTAATATG 57.785 37.500 9.64 0.00 45.48 1.78
3293 8931 6.844696 TTGAGCTCGCTCGAATTTTAATAT 57.155 33.333 9.64 0.00 45.48 1.28
3294 8932 6.312918 AGTTTGAGCTCGCTCGAATTTTAATA 59.687 34.615 20.94 0.00 45.11 0.98
3295 8933 5.122396 AGTTTGAGCTCGCTCGAATTTTAAT 59.878 36.000 20.94 0.00 45.11 1.40
3296 8934 4.451096 AGTTTGAGCTCGCTCGAATTTTAA 59.549 37.500 20.94 3.71 45.11 1.52
3297 8935 3.994392 AGTTTGAGCTCGCTCGAATTTTA 59.006 39.130 20.94 0.00 45.11 1.52
3298 8936 2.808543 AGTTTGAGCTCGCTCGAATTTT 59.191 40.909 20.94 10.02 45.11 1.82
3299 8937 2.158449 CAGTTTGAGCTCGCTCGAATTT 59.842 45.455 20.94 12.01 45.11 1.82
3300 8938 1.728971 CAGTTTGAGCTCGCTCGAATT 59.271 47.619 20.94 15.57 45.11 2.17
3301 8939 1.067565 TCAGTTTGAGCTCGCTCGAAT 60.068 47.619 20.94 10.11 45.11 3.34
3302 8940 0.313987 TCAGTTTGAGCTCGCTCGAA 59.686 50.000 15.72 15.72 45.48 3.71
3303 8941 0.109551 CTCAGTTTGAGCTCGCTCGA 60.110 55.000 9.64 9.43 45.48 4.04
3304 8942 2.357792 CTCAGTTTGAGCTCGCTCG 58.642 57.895 9.64 0.00 45.48 5.03
3328 8966 3.390135 TGTTTTACAGCTCGACCTTGAG 58.610 45.455 0.00 0.00 39.05 3.02
3329 8967 3.462483 TGTTTTACAGCTCGACCTTGA 57.538 42.857 0.00 0.00 0.00 3.02
3330 8968 3.745975 TCATGTTTTACAGCTCGACCTTG 59.254 43.478 0.00 0.00 0.00 3.61
3331 8969 3.746492 GTCATGTTTTACAGCTCGACCTT 59.254 43.478 0.00 0.00 0.00 3.50
3332 8970 3.006967 AGTCATGTTTTACAGCTCGACCT 59.993 43.478 0.00 0.00 0.00 3.85
3333 8971 3.326747 AGTCATGTTTTACAGCTCGACC 58.673 45.455 0.00 0.00 0.00 4.79
3334 8972 3.059570 CGAGTCATGTTTTACAGCTCGAC 59.940 47.826 17.91 8.40 44.04 4.20
3335 8973 3.242518 CGAGTCATGTTTTACAGCTCGA 58.757 45.455 17.91 0.00 44.04 4.04
3336 8974 2.987149 ACGAGTCATGTTTTACAGCTCG 59.013 45.455 19.62 19.62 45.32 5.03
3337 8975 3.423645 GCACGAGTCATGTTTTACAGCTC 60.424 47.826 0.00 0.00 0.00 4.09
3338 8976 2.480419 GCACGAGTCATGTTTTACAGCT 59.520 45.455 0.00 0.00 0.00 4.24
3339 8977 2.480419 AGCACGAGTCATGTTTTACAGC 59.520 45.455 0.00 0.00 0.00 4.40
3340 8978 3.740832 TGAGCACGAGTCATGTTTTACAG 59.259 43.478 0.00 0.00 0.00 2.74
3341 8979 3.723260 TGAGCACGAGTCATGTTTTACA 58.277 40.909 0.00 0.00 0.00 2.41
3342 8980 3.423645 GCTGAGCACGAGTCATGTTTTAC 60.424 47.826 0.00 0.00 0.00 2.01
3343 8981 2.736721 GCTGAGCACGAGTCATGTTTTA 59.263 45.455 0.00 0.00 0.00 1.52
3344 8982 1.532868 GCTGAGCACGAGTCATGTTTT 59.467 47.619 0.00 0.00 0.00 2.43
3345 8983 1.151668 GCTGAGCACGAGTCATGTTT 58.848 50.000 0.00 0.00 0.00 2.83
3346 8984 0.319728 AGCTGAGCACGAGTCATGTT 59.680 50.000 7.39 0.00 0.00 2.71
3347 8985 0.319728 AAGCTGAGCACGAGTCATGT 59.680 50.000 7.39 0.00 0.00 3.21
3348 8986 0.720027 CAAGCTGAGCACGAGTCATG 59.280 55.000 7.39 0.00 0.00 3.07
3349 8987 0.319728 ACAAGCTGAGCACGAGTCAT 59.680 50.000 7.39 0.00 0.00 3.06
3350 8988 0.958822 TACAAGCTGAGCACGAGTCA 59.041 50.000 7.39 0.00 0.00 3.41
3351 8989 1.721926 GTTACAAGCTGAGCACGAGTC 59.278 52.381 7.39 0.00 0.00 3.36
3352 8990 1.784525 GTTACAAGCTGAGCACGAGT 58.215 50.000 7.39 1.63 0.00 4.18
3353 8991 0.710567 CGTTACAAGCTGAGCACGAG 59.289 55.000 7.39 0.00 0.00 4.18
3354 8992 0.312729 TCGTTACAAGCTGAGCACGA 59.687 50.000 12.04 12.04 34.45 4.35
3355 8993 1.350193 ATCGTTACAAGCTGAGCACG 58.650 50.000 7.39 7.63 0.00 5.34
3356 8994 3.722082 CGAAATCGTTACAAGCTGAGCAC 60.722 47.826 7.39 0.00 34.11 4.40
3357 8995 2.411748 CGAAATCGTTACAAGCTGAGCA 59.588 45.455 7.39 0.00 34.11 4.26
3358 8996 2.222819 CCGAAATCGTTACAAGCTGAGC 60.223 50.000 0.00 0.00 37.74 4.26
3359 8997 2.993899 ACCGAAATCGTTACAAGCTGAG 59.006 45.455 1.79 0.00 37.74 3.35
3360 8998 2.991190 GACCGAAATCGTTACAAGCTGA 59.009 45.455 1.79 0.00 37.74 4.26
3361 8999 2.222508 CGACCGAAATCGTTACAAGCTG 60.223 50.000 1.79 0.00 37.33 4.24
3362 9000 1.990563 CGACCGAAATCGTTACAAGCT 59.009 47.619 1.79 0.00 37.33 3.74
3363 9001 1.987770 TCGACCGAAATCGTTACAAGC 59.012 47.619 1.79 0.00 42.80 4.01
3364 9002 4.103357 AGATCGACCGAAATCGTTACAAG 58.897 43.478 1.79 0.00 42.80 3.16
3365 9003 4.100529 GAGATCGACCGAAATCGTTACAA 58.899 43.478 1.79 0.00 42.80 2.41
3366 9004 3.688272 GAGATCGACCGAAATCGTTACA 58.312 45.455 1.79 0.00 42.80 2.41
3367 9005 2.712969 CGAGATCGACCGAAATCGTTAC 59.287 50.000 16.28 0.00 42.80 2.50
3368 9006 2.609002 TCGAGATCGACCGAAATCGTTA 59.391 45.455 20.67 7.68 44.22 3.18
3369 9007 1.399440 TCGAGATCGACCGAAATCGTT 59.601 47.619 20.67 0.00 44.22 3.85
3370 9008 1.003759 CTCGAGATCGACCGAAATCGT 60.004 52.381 20.67 0.00 44.22 3.73
3371 9009 1.003759 ACTCGAGATCGACCGAAATCG 60.004 52.381 21.68 17.60 44.22 3.34
3372 9010 2.759538 ACTCGAGATCGACCGAAATC 57.240 50.000 21.68 0.00 44.22 2.17
3373 9011 3.626670 ACTAACTCGAGATCGACCGAAAT 59.373 43.478 21.68 0.00 44.22 2.17
3374 9012 3.005554 ACTAACTCGAGATCGACCGAAA 58.994 45.455 21.68 0.00 44.22 3.46
3375 9013 2.625737 ACTAACTCGAGATCGACCGAA 58.374 47.619 21.68 0.00 44.22 4.30
3376 9014 2.306341 ACTAACTCGAGATCGACCGA 57.694 50.000 21.68 6.30 44.22 4.69
3377 9015 3.352652 GAAACTAACTCGAGATCGACCG 58.647 50.000 21.68 2.50 44.22 4.79
3378 9016 3.063180 TCGAAACTAACTCGAGATCGACC 59.937 47.826 21.68 1.60 44.22 4.79
3379 9017 4.256140 TCGAAACTAACTCGAGATCGAC 57.744 45.455 21.68 3.36 44.22 4.20
3386 9024 5.100259 CCATTTAGCTCGAAACTAACTCGA 58.900 41.667 6.99 0.00 42.75 4.04
3387 9025 5.100259 TCCATTTAGCTCGAAACTAACTCG 58.900 41.667 6.99 0.00 37.66 4.18
3388 9026 6.963049 TTCCATTTAGCTCGAAACTAACTC 57.037 37.500 6.99 0.00 29.52 3.01
3389 9027 8.258708 ACTATTCCATTTAGCTCGAAACTAACT 58.741 33.333 6.99 0.80 29.52 2.24
3390 9028 8.421673 ACTATTCCATTTAGCTCGAAACTAAC 57.578 34.615 6.99 0.00 29.52 2.34
3393 9031 9.444600 TTTTACTATTCCATTTAGCTCGAAACT 57.555 29.630 0.00 0.00 0.00 2.66
3396 9034 9.444600 AGTTTTTACTATTCCATTTAGCTCGAA 57.555 29.630 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.