Multiple sequence alignment - TraesCS7A01G141500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G141500 chr7A 100.000 3890 0 0 1 3890 93038278 93034389 0.000000e+00 7184.0
1 TraesCS7A01G141500 chr7A 100.000 606 0 0 4168 4773 93034111 93033506 0.000000e+00 1120.0
2 TraesCS7A01G141500 chr7A 86.626 329 44 0 1003 1331 93282216 93281888 9.760000e-97 364.0
3 TraesCS7A01G141500 chr7B 94.126 3558 161 33 364 3890 42080664 42077124 0.000000e+00 5369.0
4 TraesCS7A01G141500 chr7B 94.384 552 24 4 4168 4716 42077086 42076539 0.000000e+00 841.0
5 TraesCS7A01G141500 chr7B 78.548 909 181 8 1799 2697 43191310 43192214 1.910000e-163 586.0
6 TraesCS7A01G141500 chr7B 85.380 342 48 2 991 1331 43190415 43190755 2.110000e-93 353.0
7 TraesCS7A01G141500 chr7B 96.610 59 2 0 4715 4773 42076379 42076321 1.090000e-16 99.0
8 TraesCS7A01G141500 chr7D 93.492 3196 142 33 682 3862 91007488 91004344 0.000000e+00 4689.0
9 TraesCS7A01G141500 chr7D 79.098 909 176 10 1799 2697 91707561 91706657 8.780000e-172 614.0
10 TraesCS7A01G141500 chr7D 89.706 340 20 7 4168 4503 91004288 91003960 2.050000e-113 420.0
11 TraesCS7A01G141500 chr7D 88.393 336 16 7 332 665 91007881 91007567 2.700000e-102 383.0
12 TraesCS7A01G141500 chr7D 86.626 329 41 3 1004 1331 91708365 91708039 1.260000e-95 361.0
13 TraesCS7A01G141500 chrUn 99.262 271 2 0 1 271 460794004 460793734 1.540000e-134 490.0
14 TraesCS7A01G141500 chr6A 99.262 271 2 0 1 271 159144226 159144496 1.540000e-134 490.0
15 TraesCS7A01G141500 chr5A 99.262 271 2 0 1 271 550787990 550787720 1.540000e-134 490.0
16 TraesCS7A01G141500 chr4A 99.262 271 2 0 1 271 626761710 626761980 1.540000e-134 490.0
17 TraesCS7A01G141500 chr4A 99.262 271 2 0 1 271 637629728 637629458 1.540000e-134 490.0
18 TraesCS7A01G141500 chr3A 99.262 271 2 0 1 271 39618456 39618726 1.540000e-134 490.0
19 TraesCS7A01G141500 chr3A 99.262 271 2 0 1 271 304763977 304764247 1.540000e-134 490.0
20 TraesCS7A01G141500 chr3A 99.262 271 2 0 1 271 383831661 383831931 1.540000e-134 490.0
21 TraesCS7A01G141500 chr2A 99.262 271 2 0 1 271 10712493 10712763 1.540000e-134 490.0
22 TraesCS7A01G141500 chr6B 100.000 28 0 0 281 308 570975546 570975573 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G141500 chr7A 93033506 93038278 4772 True 4152.000000 7184 100.000000 1 4773 2 chr7A.!!$R2 4772
1 TraesCS7A01G141500 chr7B 42076321 42080664 4343 True 2103.000000 5369 95.040000 364 4773 3 chr7B.!!$R1 4409
2 TraesCS7A01G141500 chr7B 43190415 43192214 1799 False 469.500000 586 81.964000 991 2697 2 chr7B.!!$F1 1706
3 TraesCS7A01G141500 chr7D 91003960 91007881 3921 True 1830.666667 4689 90.530333 332 4503 3 chr7D.!!$R1 4171
4 TraesCS7A01G141500 chr7D 91706657 91708365 1708 True 487.500000 614 82.862000 1004 2697 2 chr7D.!!$R2 1693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.035915 GGAAGGAGGAGAGGTGTTGC 60.036 60.0 0.0 0.0 0.00 4.17 F
401 403 0.040425 CCCAGCTTCAAAAACGGACG 60.040 55.0 0.0 0.0 0.00 4.79 F
591 595 0.507358 GACTAAATCGAATCCGCCGC 59.493 55.0 0.0 0.0 35.37 6.53 F
2353 2706 0.321671 CTGCCTTCTTCCTCGGAACA 59.678 55.0 0.0 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2153 2500 3.005898 CGATCCAATGTCGTGGCG 58.994 61.111 0.00 0.0 38.68 5.69 R
2348 2701 3.643159 ATTTTGCCGAAGTTCTGTTCC 57.357 42.857 0.56 0.0 0.00 3.62 R
2411 2764 1.763770 CTTCACAGCCCCTTCACCT 59.236 57.895 0.00 0.0 0.00 4.00 R
3778 4139 0.180406 AAACAAGCTCACCGGTCACT 59.820 50.000 2.59 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.856145 ATAGTAAATTGCTGCTCCATATAGC 57.144 36.000 0.00 0.00 43.08 2.97
46 47 7.009568 GCTCCATATAGCAATAGTAATGCAC 57.990 40.000 12.62 0.00 46.22 4.57
47 48 6.037610 GCTCCATATAGCAATAGTAATGCACC 59.962 42.308 12.62 0.00 46.22 5.01
48 49 7.257790 TCCATATAGCAATAGTAATGCACCT 57.742 36.000 12.62 0.00 46.22 4.00
49 50 8.374184 TCCATATAGCAATAGTAATGCACCTA 57.626 34.615 12.62 1.76 46.22 3.08
50 51 8.821817 TCCATATAGCAATAGTAATGCACCTAA 58.178 33.333 12.62 0.00 46.22 2.69
51 52 9.618890 CCATATAGCAATAGTAATGCACCTAAT 57.381 33.333 12.62 1.38 46.22 1.73
55 56 7.264373 AGCAATAGTAATGCACCTAATCAAC 57.736 36.000 12.62 0.00 46.22 3.18
56 57 6.828273 AGCAATAGTAATGCACCTAATCAACA 59.172 34.615 12.62 0.00 46.22 3.33
57 58 7.503566 AGCAATAGTAATGCACCTAATCAACAT 59.496 33.333 12.62 0.00 46.22 2.71
58 59 8.137437 GCAATAGTAATGCACCTAATCAACATT 58.863 33.333 5.29 0.00 43.29 2.71
59 60 9.454585 CAATAGTAATGCACCTAATCAACATTG 57.545 33.333 0.00 0.00 33.31 2.82
60 61 8.752005 ATAGTAATGCACCTAATCAACATTGT 57.248 30.769 0.00 0.00 33.31 2.71
61 62 9.845740 ATAGTAATGCACCTAATCAACATTGTA 57.154 29.630 0.00 0.00 33.31 2.41
62 63 8.213518 AGTAATGCACCTAATCAACATTGTAG 57.786 34.615 0.00 0.00 33.31 2.74
63 64 8.046708 AGTAATGCACCTAATCAACATTGTAGA 58.953 33.333 0.00 0.00 33.31 2.59
64 65 6.932356 ATGCACCTAATCAACATTGTAGAG 57.068 37.500 0.00 0.00 0.00 2.43
65 66 4.635765 TGCACCTAATCAACATTGTAGAGC 59.364 41.667 0.00 0.00 0.00 4.09
66 67 4.635765 GCACCTAATCAACATTGTAGAGCA 59.364 41.667 0.00 0.00 0.00 4.26
67 68 5.297776 GCACCTAATCAACATTGTAGAGCAT 59.702 40.000 0.00 0.00 0.00 3.79
68 69 6.512415 GCACCTAATCAACATTGTAGAGCATC 60.512 42.308 0.00 0.00 0.00 3.91
69 70 6.017605 CACCTAATCAACATTGTAGAGCATCC 60.018 42.308 0.00 0.00 33.66 3.51
70 71 6.126652 ACCTAATCAACATTGTAGAGCATCCT 60.127 38.462 0.00 0.00 33.66 3.24
71 72 6.204301 CCTAATCAACATTGTAGAGCATCCTG 59.796 42.308 0.00 0.00 33.66 3.86
72 73 4.558226 TCAACATTGTAGAGCATCCTGT 57.442 40.909 0.00 0.00 33.66 4.00
73 74 4.910195 TCAACATTGTAGAGCATCCTGTT 58.090 39.130 0.00 0.00 33.66 3.16
74 75 6.048732 TCAACATTGTAGAGCATCCTGTTA 57.951 37.500 0.00 0.00 33.66 2.41
75 76 5.874810 TCAACATTGTAGAGCATCCTGTTAC 59.125 40.000 0.00 0.00 33.66 2.50
76 77 5.420725 ACATTGTAGAGCATCCTGTTACA 57.579 39.130 0.00 0.00 33.66 2.41
77 78 5.804639 ACATTGTAGAGCATCCTGTTACAA 58.195 37.500 0.00 0.00 33.66 2.41
78 79 6.237901 ACATTGTAGAGCATCCTGTTACAAA 58.762 36.000 0.00 0.00 33.66 2.83
79 80 6.149474 ACATTGTAGAGCATCCTGTTACAAAC 59.851 38.462 0.00 0.00 33.66 2.93
80 81 5.483685 TGTAGAGCATCCTGTTACAAACT 57.516 39.130 0.00 0.00 33.66 2.66
81 82 5.865085 TGTAGAGCATCCTGTTACAAACTT 58.135 37.500 0.00 0.00 33.66 2.66
82 83 5.700832 TGTAGAGCATCCTGTTACAAACTTG 59.299 40.000 0.00 0.00 33.66 3.16
83 84 4.718961 AGAGCATCCTGTTACAAACTTGT 58.281 39.130 0.07 0.07 39.89 3.16
84 85 5.133221 AGAGCATCCTGTTACAAACTTGTT 58.867 37.500 0.00 0.00 38.13 2.83
85 86 5.239525 AGAGCATCCTGTTACAAACTTGTTC 59.760 40.000 0.00 0.00 38.13 3.18
86 87 5.133221 AGCATCCTGTTACAAACTTGTTCT 58.867 37.500 0.00 0.00 42.35 3.01
87 88 5.009010 AGCATCCTGTTACAAACTTGTTCTG 59.991 40.000 0.00 0.33 42.35 3.02
88 89 5.008613 GCATCCTGTTACAAACTTGTTCTGA 59.991 40.000 0.00 0.00 42.35 3.27
89 90 6.294176 GCATCCTGTTACAAACTTGTTCTGAT 60.294 38.462 0.00 0.85 42.35 2.90
90 91 6.861065 TCCTGTTACAAACTTGTTCTGATC 57.139 37.500 0.00 0.00 42.35 2.92
91 92 5.763204 TCCTGTTACAAACTTGTTCTGATCC 59.237 40.000 0.00 0.00 42.35 3.36
92 93 5.765182 CCTGTTACAAACTTGTTCTGATCCT 59.235 40.000 0.00 0.00 42.35 3.24
93 94 6.293626 CCTGTTACAAACTTGTTCTGATCCTG 60.294 42.308 0.00 0.00 42.35 3.86
94 95 5.008613 TGTTACAAACTTGTTCTGATCCTGC 59.991 40.000 0.00 0.00 42.35 4.85
95 96 3.554934 ACAAACTTGTTCTGATCCTGCA 58.445 40.909 0.00 0.00 38.47 4.41
96 97 3.953612 ACAAACTTGTTCTGATCCTGCAA 59.046 39.130 0.00 0.00 38.47 4.08
97 98 4.402155 ACAAACTTGTTCTGATCCTGCAAA 59.598 37.500 0.00 0.00 38.47 3.68
98 99 5.069516 ACAAACTTGTTCTGATCCTGCAAAT 59.930 36.000 0.00 0.00 38.47 2.32
99 100 5.796424 AACTTGTTCTGATCCTGCAAATT 57.204 34.783 0.00 0.00 0.00 1.82
100 101 6.899393 AACTTGTTCTGATCCTGCAAATTA 57.101 33.333 0.00 0.00 0.00 1.40
101 102 6.899393 ACTTGTTCTGATCCTGCAAATTAA 57.101 33.333 0.00 0.00 0.00 1.40
102 103 7.472334 ACTTGTTCTGATCCTGCAAATTAAT 57.528 32.000 0.00 0.00 0.00 1.40
103 104 7.318141 ACTTGTTCTGATCCTGCAAATTAATG 58.682 34.615 0.00 0.00 0.00 1.90
104 105 6.211587 TGTTCTGATCCTGCAAATTAATGG 57.788 37.500 0.00 0.00 0.00 3.16
105 106 5.127519 TGTTCTGATCCTGCAAATTAATGGG 59.872 40.000 0.00 0.00 0.00 4.00
106 107 4.217510 TCTGATCCTGCAAATTAATGGGG 58.782 43.478 0.00 0.00 0.00 4.96
107 108 4.079269 TCTGATCCTGCAAATTAATGGGGA 60.079 41.667 0.00 0.00 0.00 4.81
108 109 4.217510 TGATCCTGCAAATTAATGGGGAG 58.782 43.478 0.00 0.00 0.00 4.30
109 110 3.030873 TCCTGCAAATTAATGGGGAGG 57.969 47.619 16.51 16.51 39.90 4.30
110 111 2.584965 TCCTGCAAATTAATGGGGAGGA 59.415 45.455 19.56 19.56 44.27 3.71
111 112 3.012274 TCCTGCAAATTAATGGGGAGGAA 59.988 43.478 20.58 9.66 43.64 3.36
112 113 3.385755 CCTGCAAATTAATGGGGAGGAAG 59.614 47.826 17.30 0.00 40.90 3.46
113 114 4.280819 CTGCAAATTAATGGGGAGGAAGA 58.719 43.478 0.00 0.00 0.00 2.87
114 115 4.682563 TGCAAATTAATGGGGAGGAAGAA 58.317 39.130 0.00 0.00 0.00 2.52
115 116 4.466015 TGCAAATTAATGGGGAGGAAGAAC 59.534 41.667 0.00 0.00 0.00 3.01
116 117 4.711846 GCAAATTAATGGGGAGGAAGAACT 59.288 41.667 0.00 0.00 0.00 3.01
117 118 5.891551 GCAAATTAATGGGGAGGAAGAACTA 59.108 40.000 0.00 0.00 0.00 2.24
118 119 6.039829 GCAAATTAATGGGGAGGAAGAACTAG 59.960 42.308 0.00 0.00 0.00 2.57
119 120 5.913946 ATTAATGGGGAGGAAGAACTAGG 57.086 43.478 0.00 0.00 0.00 3.02
120 121 2.198334 ATGGGGAGGAAGAACTAGGG 57.802 55.000 0.00 0.00 0.00 3.53
121 122 1.098589 TGGGGAGGAAGAACTAGGGA 58.901 55.000 0.00 0.00 0.00 4.20
122 123 1.008449 TGGGGAGGAAGAACTAGGGAG 59.992 57.143 0.00 0.00 0.00 4.30
123 124 1.693083 GGGGAGGAAGAACTAGGGAGG 60.693 61.905 0.00 0.00 0.00 4.30
124 125 1.693083 GGGAGGAAGAACTAGGGAGGG 60.693 61.905 0.00 0.00 0.00 4.30
125 126 1.291335 GGAGGAAGAACTAGGGAGGGA 59.709 57.143 0.00 0.00 0.00 4.20
126 127 2.673258 GAGGAAGAACTAGGGAGGGAG 58.327 57.143 0.00 0.00 0.00 4.30
127 128 1.292546 AGGAAGAACTAGGGAGGGAGG 59.707 57.143 0.00 0.00 0.00 4.30
128 129 1.693083 GGAAGAACTAGGGAGGGAGGG 60.693 61.905 0.00 0.00 0.00 4.30
129 130 1.291335 GAAGAACTAGGGAGGGAGGGA 59.709 57.143 0.00 0.00 0.00 4.20
130 131 1.405243 AGAACTAGGGAGGGAGGGAA 58.595 55.000 0.00 0.00 0.00 3.97
131 132 1.948243 AGAACTAGGGAGGGAGGGAAT 59.052 52.381 0.00 0.00 0.00 3.01
132 133 2.050918 GAACTAGGGAGGGAGGGAATG 58.949 57.143 0.00 0.00 0.00 2.67
133 134 0.269173 ACTAGGGAGGGAGGGAATGG 59.731 60.000 0.00 0.00 0.00 3.16
134 135 0.269173 CTAGGGAGGGAGGGAATGGT 59.731 60.000 0.00 0.00 0.00 3.55
135 136 1.508185 CTAGGGAGGGAGGGAATGGTA 59.492 57.143 0.00 0.00 0.00 3.25
136 137 0.728843 AGGGAGGGAGGGAATGGTAA 59.271 55.000 0.00 0.00 0.00 2.85
137 138 1.301511 AGGGAGGGAGGGAATGGTAAT 59.698 52.381 0.00 0.00 0.00 1.89
138 139 1.425448 GGGAGGGAGGGAATGGTAATG 59.575 57.143 0.00 0.00 0.00 1.90
139 140 2.136026 GGAGGGAGGGAATGGTAATGT 58.864 52.381 0.00 0.00 0.00 2.71
140 141 2.514160 GGAGGGAGGGAATGGTAATGTT 59.486 50.000 0.00 0.00 0.00 2.71
141 142 3.052869 GGAGGGAGGGAATGGTAATGTTT 60.053 47.826 0.00 0.00 0.00 2.83
142 143 4.207955 GAGGGAGGGAATGGTAATGTTTC 58.792 47.826 0.00 0.00 0.00 2.78
143 144 3.596046 AGGGAGGGAATGGTAATGTTTCA 59.404 43.478 0.00 0.00 0.00 2.69
144 145 3.954258 GGGAGGGAATGGTAATGTTTCAG 59.046 47.826 0.00 0.00 0.00 3.02
145 146 4.325030 GGGAGGGAATGGTAATGTTTCAGA 60.325 45.833 0.00 0.00 0.00 3.27
146 147 4.884164 GGAGGGAATGGTAATGTTTCAGAG 59.116 45.833 0.00 0.00 0.00 3.35
147 148 5.339200 GGAGGGAATGGTAATGTTTCAGAGA 60.339 44.000 0.00 0.00 0.00 3.10
148 149 6.139679 AGGGAATGGTAATGTTTCAGAGAA 57.860 37.500 0.00 0.00 0.00 2.87
149 150 6.183347 AGGGAATGGTAATGTTTCAGAGAAG 58.817 40.000 0.00 0.00 0.00 2.85
150 151 6.012508 AGGGAATGGTAATGTTTCAGAGAAGA 60.013 38.462 0.00 0.00 0.00 2.87
151 152 6.659242 GGGAATGGTAATGTTTCAGAGAAGAA 59.341 38.462 0.00 0.00 0.00 2.52
152 153 7.362142 GGGAATGGTAATGTTTCAGAGAAGAAC 60.362 40.741 0.00 0.00 0.00 3.01
153 154 7.174946 GGAATGGTAATGTTTCAGAGAAGAACA 59.825 37.037 0.00 0.00 0.00 3.18
154 155 8.463930 AATGGTAATGTTTCAGAGAAGAACAA 57.536 30.769 0.00 0.00 0.00 2.83
155 156 8.641498 ATGGTAATGTTTCAGAGAAGAACAAT 57.359 30.769 0.00 0.00 0.00 2.71
156 157 9.739276 ATGGTAATGTTTCAGAGAAGAACAATA 57.261 29.630 0.00 0.00 0.00 1.90
157 158 9.219603 TGGTAATGTTTCAGAGAAGAACAATAG 57.780 33.333 0.00 0.00 0.00 1.73
158 159 9.220767 GGTAATGTTTCAGAGAAGAACAATAGT 57.779 33.333 0.00 0.00 0.00 2.12
163 164 8.721478 TGTTTCAGAGAAGAACAATAGTAATGC 58.279 33.333 0.00 0.00 0.00 3.56
164 165 8.940952 GTTTCAGAGAAGAACAATAGTAATGCT 58.059 33.333 0.00 0.00 0.00 3.79
165 166 8.709386 TTCAGAGAAGAACAATAGTAATGCTC 57.291 34.615 0.00 0.00 0.00 4.26
166 167 7.268586 TCAGAGAAGAACAATAGTAATGCTCC 58.731 38.462 0.00 0.00 0.00 4.70
167 168 7.044181 CAGAGAAGAACAATAGTAATGCTCCA 58.956 38.462 0.00 0.00 0.00 3.86
168 169 7.714377 CAGAGAAGAACAATAGTAATGCTCCAT 59.286 37.037 0.00 0.00 0.00 3.41
169 170 8.928448 AGAGAAGAACAATAGTAATGCTCCATA 58.072 33.333 0.00 0.00 0.00 2.74
170 171 9.717942 GAGAAGAACAATAGTAATGCTCCATAT 57.282 33.333 0.00 0.00 0.00 1.78
173 174 9.442047 AAGAACAATAGTAATGCTCCATATAGC 57.558 33.333 0.00 0.00 43.08 2.97
196 197 7.678947 GCAATAGTAATGCTCCATATGTTCT 57.321 36.000 2.80 0.00 40.64 3.01
197 198 7.524912 GCAATAGTAATGCTCCATATGTTCTG 58.475 38.462 2.80 0.00 40.64 3.02
198 199 7.388776 GCAATAGTAATGCTCCATATGTTCTGA 59.611 37.037 2.80 0.00 40.64 3.27
199 200 9.445878 CAATAGTAATGCTCCATATGTTCTGAT 57.554 33.333 1.24 0.00 0.00 2.90
200 201 9.664332 AATAGTAATGCTCCATATGTTCTGATC 57.336 33.333 1.24 0.00 0.00 2.92
201 202 6.471146 AGTAATGCTCCATATGTTCTGATCC 58.529 40.000 1.24 0.00 0.00 3.36
202 203 4.987963 ATGCTCCATATGTTCTGATCCA 57.012 40.909 1.24 0.00 0.00 3.41
203 204 4.987963 TGCTCCATATGTTCTGATCCAT 57.012 40.909 1.24 0.00 0.00 3.41
204 205 6.631763 ATGCTCCATATGTTCTGATCCATA 57.368 37.500 1.24 0.00 0.00 2.74
205 206 6.631763 TGCTCCATATGTTCTGATCCATAT 57.368 37.500 1.24 5.14 35.23 1.78
206 207 7.738437 TGCTCCATATGTTCTGATCCATATA 57.262 36.000 1.24 0.00 33.58 0.86
207 208 7.789026 TGCTCCATATGTTCTGATCCATATAG 58.211 38.462 1.24 6.63 33.58 1.31
208 209 6.705381 GCTCCATATGTTCTGATCCATATAGC 59.295 42.308 1.24 12.19 33.58 2.97
209 210 7.634429 GCTCCATATGTTCTGATCCATATAGCA 60.634 40.741 17.31 5.77 36.51 3.49
210 211 8.149631 TCCATATGTTCTGATCCATATAGCAA 57.850 34.615 1.24 0.00 33.58 3.91
211 212 8.605065 TCCATATGTTCTGATCCATATAGCAAA 58.395 33.333 1.24 0.00 33.58 3.68
212 213 9.234827 CCATATGTTCTGATCCATATAGCAAAA 57.765 33.333 1.24 0.00 33.58 2.44
215 216 8.985315 ATGTTCTGATCCATATAGCAAAAAGA 57.015 30.769 0.00 0.00 0.00 2.52
216 217 8.806429 TGTTCTGATCCATATAGCAAAAAGAA 57.194 30.769 0.00 0.00 0.00 2.52
217 218 8.677300 TGTTCTGATCCATATAGCAAAAAGAAC 58.323 33.333 0.00 0.00 39.95 3.01
218 219 8.897752 GTTCTGATCCATATAGCAAAAAGAACT 58.102 33.333 0.00 0.00 37.74 3.01
220 221 9.770097 TCTGATCCATATAGCAAAAAGAACTAG 57.230 33.333 0.00 0.00 0.00 2.57
221 222 8.908786 TGATCCATATAGCAAAAAGAACTAGG 57.091 34.615 0.00 0.00 0.00 3.02
222 223 7.939039 TGATCCATATAGCAAAAAGAACTAGGG 59.061 37.037 0.00 0.00 0.00 3.53
223 224 7.446106 TCCATATAGCAAAAAGAACTAGGGA 57.554 36.000 0.00 0.00 0.00 4.20
224 225 7.509546 TCCATATAGCAAAAAGAACTAGGGAG 58.490 38.462 0.00 0.00 0.00 4.30
225 226 6.712547 CCATATAGCAAAAAGAACTAGGGAGG 59.287 42.308 0.00 0.00 0.00 4.30
226 227 3.441500 AGCAAAAAGAACTAGGGAGGG 57.558 47.619 0.00 0.00 0.00 4.30
227 228 2.986728 AGCAAAAAGAACTAGGGAGGGA 59.013 45.455 0.00 0.00 0.00 4.20
228 229 3.009584 AGCAAAAAGAACTAGGGAGGGAG 59.990 47.826 0.00 0.00 0.00 4.30
229 230 3.874193 GCAAAAAGAACTAGGGAGGGAGG 60.874 52.174 0.00 0.00 0.00 4.30
230 231 2.272074 AAAGAACTAGGGAGGGAGGG 57.728 55.000 0.00 0.00 0.00 4.30
231 232 1.405243 AAGAACTAGGGAGGGAGGGA 58.595 55.000 0.00 0.00 0.00 4.20
232 233 1.405243 AGAACTAGGGAGGGAGGGAA 58.595 55.000 0.00 0.00 0.00 3.97
233 234 1.948243 AGAACTAGGGAGGGAGGGAAT 59.052 52.381 0.00 0.00 0.00 3.01
234 235 2.050918 GAACTAGGGAGGGAGGGAATG 58.949 57.143 0.00 0.00 0.00 2.67
235 236 0.269173 ACTAGGGAGGGAGGGAATGG 59.731 60.000 0.00 0.00 0.00 3.16
236 237 0.474660 CTAGGGAGGGAGGGAATGGG 60.475 65.000 0.00 0.00 0.00 4.00
237 238 1.985473 TAGGGAGGGAGGGAATGGGG 61.985 65.000 0.00 0.00 0.00 4.96
238 239 2.376842 GGAGGGAGGGAATGGGGA 59.623 66.667 0.00 0.00 0.00 4.81
239 240 1.772156 GGAGGGAGGGAATGGGGAG 60.772 68.421 0.00 0.00 0.00 4.30
240 241 1.772156 GAGGGAGGGAATGGGGAGG 60.772 68.421 0.00 0.00 0.00 4.30
241 242 2.271493 GAGGGAGGGAATGGGGAGGA 62.271 65.000 0.00 0.00 0.00 3.71
242 243 1.308746 GGGAGGGAATGGGGAGGAA 60.309 63.158 0.00 0.00 0.00 3.36
243 244 1.356494 GGGAGGGAATGGGGAGGAAG 61.356 65.000 0.00 0.00 0.00 3.46
244 245 1.356494 GGAGGGAATGGGGAGGAAGG 61.356 65.000 0.00 0.00 0.00 3.46
245 246 1.309102 AGGGAATGGGGAGGAAGGG 60.309 63.158 0.00 0.00 0.00 3.95
246 247 1.622752 GGGAATGGGGAGGAAGGGT 60.623 63.158 0.00 0.00 0.00 4.34
247 248 1.615262 GGAATGGGGAGGAAGGGTG 59.385 63.158 0.00 0.00 0.00 4.61
248 249 1.615262 GAATGGGGAGGAAGGGTGG 59.385 63.158 0.00 0.00 0.00 4.61
249 250 0.919289 GAATGGGGAGGAAGGGTGGA 60.919 60.000 0.00 0.00 0.00 4.02
250 251 0.921256 AATGGGGAGGAAGGGTGGAG 60.921 60.000 0.00 0.00 0.00 3.86
251 252 1.837533 ATGGGGAGGAAGGGTGGAGA 61.838 60.000 0.00 0.00 0.00 3.71
252 253 1.690985 GGGGAGGAAGGGTGGAGAG 60.691 68.421 0.00 0.00 0.00 3.20
253 254 1.690985 GGGAGGAAGGGTGGAGAGG 60.691 68.421 0.00 0.00 0.00 3.69
254 255 1.690985 GGAGGAAGGGTGGAGAGGG 60.691 68.421 0.00 0.00 0.00 4.30
255 256 1.392534 GAGGAAGGGTGGAGAGGGA 59.607 63.158 0.00 0.00 0.00 4.20
256 257 0.689412 GAGGAAGGGTGGAGAGGGAG 60.689 65.000 0.00 0.00 0.00 4.30
257 258 1.690985 GGAAGGGTGGAGAGGGAGG 60.691 68.421 0.00 0.00 0.00 4.30
258 259 1.392534 GAAGGGTGGAGAGGGAGGA 59.607 63.158 0.00 0.00 0.00 3.71
259 260 0.252742 GAAGGGTGGAGAGGGAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
260 261 0.252927 AAGGGTGGAGAGGGAGGAAG 60.253 60.000 0.00 0.00 0.00 3.46
261 262 1.690985 GGGTGGAGAGGGAGGAAGG 60.691 68.421 0.00 0.00 0.00 3.46
262 263 1.392534 GGTGGAGAGGGAGGAAGGA 59.607 63.158 0.00 0.00 0.00 3.36
263 264 0.689412 GGTGGAGAGGGAGGAAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
264 265 0.689412 GTGGAGAGGGAGGAAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
265 266 0.855855 TGGAGAGGGAGGAAGGAGGA 60.856 60.000 0.00 0.00 0.00 3.71
266 267 0.105709 GGAGAGGGAGGAAGGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
267 268 0.930726 GAGAGGGAGGAAGGAGGAGA 59.069 60.000 0.00 0.00 0.00 3.71
268 269 0.933700 AGAGGGAGGAAGGAGGAGAG 59.066 60.000 0.00 0.00 0.00 3.20
269 270 0.105709 GAGGGAGGAAGGAGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
270 271 0.858139 AGGGAGGAAGGAGGAGAGGT 60.858 60.000 0.00 0.00 0.00 3.85
271 272 0.689412 GGGAGGAAGGAGGAGAGGTG 60.689 65.000 0.00 0.00 0.00 4.00
272 273 0.041982 GGAGGAAGGAGGAGAGGTGT 59.958 60.000 0.00 0.00 0.00 4.16
273 274 1.553651 GGAGGAAGGAGGAGAGGTGTT 60.554 57.143 0.00 0.00 0.00 3.32
274 275 1.552792 GAGGAAGGAGGAGAGGTGTTG 59.447 57.143 0.00 0.00 0.00 3.33
275 276 0.035915 GGAAGGAGGAGAGGTGTTGC 60.036 60.000 0.00 0.00 0.00 4.17
276 277 0.390472 GAAGGAGGAGAGGTGTTGCG 60.390 60.000 0.00 0.00 0.00 4.85
277 278 1.831652 AAGGAGGAGAGGTGTTGCGG 61.832 60.000 0.00 0.00 0.00 5.69
278 279 2.266055 GAGGAGAGGTGTTGCGGG 59.734 66.667 0.00 0.00 0.00 6.13
279 280 3.959991 GAGGAGAGGTGTTGCGGGC 62.960 68.421 0.00 0.00 0.00 6.13
281 282 4.373116 GAGAGGTGTTGCGGGCGA 62.373 66.667 0.00 0.00 0.00 5.54
282 283 3.665675 GAGAGGTGTTGCGGGCGAT 62.666 63.158 0.00 0.00 0.00 4.58
283 284 2.746277 GAGGTGTTGCGGGCGATT 60.746 61.111 0.00 0.00 0.00 3.34
284 285 2.282180 AGGTGTTGCGGGCGATTT 60.282 55.556 0.00 0.00 0.00 2.17
285 286 2.126502 GGTGTTGCGGGCGATTTG 60.127 61.111 0.00 0.00 0.00 2.32
286 287 2.622011 GGTGTTGCGGGCGATTTGA 61.622 57.895 0.00 0.00 0.00 2.69
287 288 1.154225 GTGTTGCGGGCGATTTGAG 60.154 57.895 0.00 0.00 0.00 3.02
288 289 2.331893 TGTTGCGGGCGATTTGAGG 61.332 57.895 0.00 0.00 0.00 3.86
289 290 2.749839 TTGCGGGCGATTTGAGGG 60.750 61.111 0.00 0.00 0.00 4.30
294 295 3.521796 GGCGATTTGAGGGCCAGC 61.522 66.667 6.18 0.00 46.13 4.85
295 296 3.880846 GCGATTTGAGGGCCAGCG 61.881 66.667 6.18 0.00 0.00 5.18
296 297 2.436646 CGATTTGAGGGCCAGCGT 60.437 61.111 6.18 0.00 0.00 5.07
297 298 2.040544 CGATTTGAGGGCCAGCGTT 61.041 57.895 6.18 0.00 0.00 4.84
298 299 1.508088 GATTTGAGGGCCAGCGTTG 59.492 57.895 6.18 0.00 0.00 4.10
299 300 0.960364 GATTTGAGGGCCAGCGTTGA 60.960 55.000 6.18 0.00 0.00 3.18
300 301 0.539438 ATTTGAGGGCCAGCGTTGAA 60.539 50.000 6.18 0.00 0.00 2.69
301 302 1.172180 TTTGAGGGCCAGCGTTGAAG 61.172 55.000 6.18 0.00 0.00 3.02
302 303 2.050836 TTGAGGGCCAGCGTTGAAGA 62.051 55.000 6.18 0.00 0.00 2.87
303 304 1.078143 GAGGGCCAGCGTTGAAGAT 60.078 57.895 6.18 0.00 0.00 2.40
304 305 1.372087 GAGGGCCAGCGTTGAAGATG 61.372 60.000 6.18 0.00 0.00 2.90
305 306 2.486966 GGCCAGCGTTGAAGATGC 59.513 61.111 0.00 0.00 40.73 3.91
306 307 2.486966 GCCAGCGTTGAAGATGCC 59.513 61.111 0.00 0.00 41.38 4.40
307 308 3.056313 GCCAGCGTTGAAGATGCCC 62.056 63.158 0.00 0.00 41.38 5.36
308 309 2.409870 CCAGCGTTGAAGATGCCCC 61.410 63.158 0.00 0.00 41.38 5.80
309 310 1.675310 CAGCGTTGAAGATGCCCCA 60.675 57.895 0.00 0.00 41.38 4.96
310 311 1.074775 AGCGTTGAAGATGCCCCAA 59.925 52.632 0.00 0.00 41.38 4.12
311 312 1.212751 GCGTTGAAGATGCCCCAAC 59.787 57.895 0.00 0.00 37.42 3.77
312 313 1.523154 GCGTTGAAGATGCCCCAACA 61.523 55.000 0.00 0.00 39.90 3.33
313 314 1.176527 CGTTGAAGATGCCCCAACAT 58.823 50.000 0.00 0.00 39.90 2.71
314 315 1.545582 CGTTGAAGATGCCCCAACATT 59.454 47.619 0.00 0.00 39.90 2.71
315 316 2.752354 CGTTGAAGATGCCCCAACATTA 59.248 45.455 0.00 0.00 39.90 1.90
316 317 3.192422 CGTTGAAGATGCCCCAACATTAA 59.808 43.478 0.00 0.00 39.90 1.40
317 318 4.494484 GTTGAAGATGCCCCAACATTAAC 58.506 43.478 0.00 0.00 39.74 2.01
318 319 3.772387 TGAAGATGCCCCAACATTAACA 58.228 40.909 0.00 0.00 0.00 2.41
319 320 4.352009 TGAAGATGCCCCAACATTAACAT 58.648 39.130 0.00 0.00 0.00 2.71
320 321 4.776837 TGAAGATGCCCCAACATTAACATT 59.223 37.500 0.00 0.00 0.00 2.71
321 322 5.248020 TGAAGATGCCCCAACATTAACATTT 59.752 36.000 0.00 0.00 0.00 2.32
322 323 5.088680 AGATGCCCCAACATTAACATTTG 57.911 39.130 0.00 0.00 0.00 2.32
323 324 4.531732 AGATGCCCCAACATTAACATTTGT 59.468 37.500 0.00 0.00 0.00 2.83
324 325 5.719085 AGATGCCCCAACATTAACATTTGTA 59.281 36.000 0.00 0.00 0.00 2.41
325 326 5.808366 TGCCCCAACATTAACATTTGTAA 57.192 34.783 0.00 0.00 0.00 2.41
326 327 6.174720 TGCCCCAACATTAACATTTGTAAA 57.825 33.333 0.00 0.00 0.00 2.01
327 328 6.773638 TGCCCCAACATTAACATTTGTAAAT 58.226 32.000 0.00 0.00 0.00 1.40
329 330 6.876257 GCCCCAACATTAACATTTGTAAATGA 59.124 34.615 20.68 2.74 46.72 2.57
330 331 7.148490 GCCCCAACATTAACATTTGTAAATGAC 60.148 37.037 20.68 0.00 46.72 3.06
362 363 1.577328 ATTGCTGCCAGACGGTTTCG 61.577 55.000 0.00 0.00 43.02 3.46
377 378 3.368539 CGGTTTCGTTATCGATGGTTCAA 59.631 43.478 8.54 0.00 45.65 2.69
394 396 4.692228 GTTCAATGAACCCAGCTTCAAAA 58.308 39.130 14.78 0.00 36.65 2.44
401 403 0.040425 CCCAGCTTCAAAAACGGACG 60.040 55.000 0.00 0.00 0.00 4.79
405 407 1.329599 AGCTTCAAAAACGGACGACAC 59.670 47.619 0.00 0.00 0.00 3.67
449 451 2.602211 CGACAGATCATCAGCAGTTCAC 59.398 50.000 0.00 0.00 0.00 3.18
470 473 2.571216 CCTCCGTCGGGTCAACTGT 61.571 63.158 12.29 0.00 33.83 3.55
474 477 1.278637 CGTCGGGTCAACTGTTTGC 59.721 57.895 0.00 0.00 32.17 3.68
510 514 7.334858 TCCTTTGCAAAAAGTCCACTATTTTT 58.665 30.769 13.84 0.00 38.74 1.94
524 528 9.010029 GTCCACTATTTTTCCTTATCTGAACAA 57.990 33.333 0.00 0.00 0.00 2.83
546 550 0.798776 CAGCGCGTGAAATCTTTCCT 59.201 50.000 8.43 0.00 36.36 3.36
548 552 2.000447 AGCGCGTGAAATCTTTCCTAC 59.000 47.619 8.43 0.00 36.36 3.18
582 586 8.642432 AGATTACTCATCAATGGACTAAATCGA 58.358 33.333 0.00 0.00 33.75 3.59
587 591 5.696270 TCATCAATGGACTAAATCGAATCCG 59.304 40.000 0.00 0.00 33.63 4.18
591 595 0.507358 GACTAAATCGAATCCGCCGC 59.493 55.000 0.00 0.00 35.37 6.53
592 596 0.878961 ACTAAATCGAATCCGCCGCC 60.879 55.000 0.00 0.00 35.37 6.13
593 597 1.566018 CTAAATCGAATCCGCCGCCC 61.566 60.000 0.00 0.00 35.37 6.13
629 636 1.645704 CCGCGAGAGGAAGAAGACGA 61.646 60.000 8.23 0.00 0.00 4.20
728 797 3.337358 TCAGCTGCAGATTCATTTTCGA 58.663 40.909 20.43 0.00 0.00 3.71
900 974 3.770040 CCACCGACTCGCCATCCA 61.770 66.667 0.00 0.00 0.00 3.41
901 975 2.501128 CACCGACTCGCCATCCAT 59.499 61.111 0.00 0.00 0.00 3.41
903 977 2.058001 ACCGACTCGCCATCCATCA 61.058 57.895 0.00 0.00 0.00 3.07
904 978 1.592669 CCGACTCGCCATCCATCAC 60.593 63.158 0.00 0.00 0.00 3.06
998 1083 3.157949 GCCGGGAAGGAGGAGGAG 61.158 72.222 2.18 0.00 45.00 3.69
1371 1457 8.220898 AGATCCCCTTTTACTAGATTAATCCC 57.779 38.462 11.92 0.00 0.00 3.85
1402 1488 2.496070 TCGGTTCCAGATCGTGAAATCT 59.504 45.455 2.11 0.00 36.41 2.40
1437 1592 3.868369 GCTCTGCTGGGTTACATTGTACA 60.868 47.826 0.00 0.00 0.00 2.90
1440 1595 5.321102 TCTGCTGGGTTACATTGTACAAAT 58.679 37.500 13.23 6.68 0.00 2.32
1446 1601 7.518370 GCTGGGTTACATTGTACAAATCGATAG 60.518 40.741 13.23 6.15 0.00 2.08
1586 1893 2.423538 GGCGAAAAAGTATCACCTGCAT 59.576 45.455 0.00 0.00 0.00 3.96
1664 1971 7.950512 TCTTTACAAAATGGAAGCTTTCATCA 58.049 30.769 20.69 7.81 0.00 3.07
1813 2160 2.040278 TGGCCCTATTGCAGATATGGAC 59.960 50.000 0.00 9.93 0.00 4.02
2094 2441 2.497675 CTGGTGGAGAATTCTTCGGAGA 59.502 50.000 9.87 0.00 34.02 3.71
2153 2500 3.686016 TCTTGGGGTTTATCTTGTCTGC 58.314 45.455 0.00 0.00 0.00 4.26
2348 2701 2.751166 TTCTTCTGCCTTCTTCCTCG 57.249 50.000 0.00 0.00 0.00 4.63
2353 2706 0.321671 CTGCCTTCTTCCTCGGAACA 59.678 55.000 0.00 0.00 0.00 3.18
2354 2707 0.321671 TGCCTTCTTCCTCGGAACAG 59.678 55.000 0.00 0.00 0.00 3.16
2411 2764 7.871973 GCAGATATTGATCTTCTCTTAGCTGAA 59.128 37.037 0.00 0.00 40.68 3.02
2597 2950 1.076777 AGCAGGTGTTGTTGGCACT 60.077 52.632 0.00 0.00 37.07 4.40
2791 3144 5.507985 CCAGTTTCATGGAGTTCTTTTGGTC 60.508 44.000 0.00 0.00 43.57 4.02
2796 3149 4.520111 TCATGGAGTTCTTTTGGTCATGTG 59.480 41.667 0.00 0.00 34.11 3.21
2939 3295 4.576463 CAGTCCAGTTTCAACTTACAAGCT 59.424 41.667 0.00 0.00 37.08 3.74
3069 3426 6.749118 CAGCTTCAGATTACAAGCCAATAAAC 59.251 38.462 0.07 0.00 45.28 2.01
3343 3704 6.408548 CCCAAGTGGTGATGATAGTCAACTAT 60.409 42.308 2.32 2.32 41.56 2.12
3484 3845 5.184892 AGCAGTTTGGGAAGATCTACAAT 57.815 39.130 0.00 0.00 0.00 2.71
3523 3884 4.012895 CTTGGCGCGCTCGTGTTT 62.013 61.111 32.29 0.00 38.14 2.83
3580 3941 3.506312 AAAACAGCACAGCGTCGCG 62.506 57.895 12.30 0.00 0.00 5.87
3697 4058 1.550327 TTCTGAGCGTGATCCTGACT 58.450 50.000 0.00 0.00 0.00 3.41
3771 4132 1.144716 CCAGGAGCTCTGCGCATTA 59.855 57.895 12.24 0.46 42.05 1.90
3845 4206 6.894828 ACTTGAAATATGACCACGTGTTTAC 58.105 36.000 15.65 3.37 0.00 2.01
3849 4210 7.932335 TGAAATATGACCACGTGTTTACTTTT 58.068 30.769 15.65 7.52 0.00 2.27
4224 4592 2.612212 TCGTTTCTGCTTTCTGGTTGAC 59.388 45.455 0.00 0.00 0.00 3.18
4249 4617 0.466922 GGAGCATGAACCCCAGGATG 60.467 60.000 0.00 0.00 0.00 3.51
4324 4692 3.610677 CCTTTTGGTGTTTGTGTTTCGAC 59.389 43.478 0.00 0.00 34.07 4.20
4365 4734 4.948621 TGGGTTTTTCGACTTTGTTCCTTA 59.051 37.500 0.00 0.00 0.00 2.69
4498 4872 7.062839 GCAAGTTTGTAGTTGTGAAAATCAACA 59.937 33.333 10.59 0.00 44.97 3.33
4514 4888 2.170397 TCAACACTGGATGTCACACTGT 59.830 45.455 0.00 0.00 42.31 3.55
4519 4893 1.001746 CTGGATGTCACACTGTCAGCT 59.998 52.381 0.00 0.00 0.00 4.24
4520 4894 1.270465 TGGATGTCACACTGTCAGCTG 60.270 52.381 7.63 7.63 0.00 4.24
4538 4912 2.146342 CTGTTCACAATTCCTCGCAGT 58.854 47.619 0.00 0.00 0.00 4.40
4563 4937 3.243201 GGTTTGCTCCTTGACTTCAACTG 60.243 47.826 0.00 0.00 0.00 3.16
4618 4992 0.828762 TTTGCTTGCATGCTGGAGGT 60.829 50.000 23.31 0.00 0.00 3.85
4651 5025 4.291783 GACGATGATAAGAAGAGGTTCCG 58.708 47.826 0.00 0.00 32.48 4.30
4653 5027 4.036971 ACGATGATAAGAAGAGGTTCCGAG 59.963 45.833 0.00 0.00 32.48 4.63
4711 5085 2.028658 TCTGCAGGTGATCACAGAACTC 60.029 50.000 26.47 8.67 36.27 3.01
4754 5289 7.014134 TCAGAAATTTGATTTTGGCTGTCAGTA 59.986 33.333 0.00 0.00 31.47 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 8.273780 GCTATATGGAGCAGCAATTTACTATT 57.726 34.615 0.00 0.00 42.36 1.73
9 10 7.856145 GCTATATGGAGCAGCAATTTACTAT 57.144 36.000 0.00 0.00 42.36 2.12
22 23 6.037610 GGTGCATTACTATTGCTATATGGAGC 59.962 42.308 0.00 0.00 43.16 4.70
23 24 7.334090 AGGTGCATTACTATTGCTATATGGAG 58.666 38.462 0.00 0.00 40.77 3.86
24 25 7.257790 AGGTGCATTACTATTGCTATATGGA 57.742 36.000 0.00 0.00 40.77 3.41
25 26 9.618890 ATTAGGTGCATTACTATTGCTATATGG 57.381 33.333 0.00 0.00 40.77 2.74
29 30 9.003658 GTTGATTAGGTGCATTACTATTGCTAT 57.996 33.333 0.00 0.00 40.77 2.97
30 31 7.990314 TGTTGATTAGGTGCATTACTATTGCTA 59.010 33.333 0.00 0.00 40.77 3.49
31 32 6.828273 TGTTGATTAGGTGCATTACTATTGCT 59.172 34.615 0.00 0.00 40.77 3.91
32 33 7.026631 TGTTGATTAGGTGCATTACTATTGC 57.973 36.000 0.00 0.00 40.55 3.56
33 34 9.454585 CAATGTTGATTAGGTGCATTACTATTG 57.545 33.333 0.00 0.00 0.00 1.90
34 35 9.189156 ACAATGTTGATTAGGTGCATTACTATT 57.811 29.630 0.00 0.00 0.00 1.73
35 36 8.752005 ACAATGTTGATTAGGTGCATTACTAT 57.248 30.769 0.00 0.00 0.00 2.12
36 37 9.325198 CTACAATGTTGATTAGGTGCATTACTA 57.675 33.333 0.00 0.00 0.00 1.82
37 38 8.046708 TCTACAATGTTGATTAGGTGCATTACT 58.953 33.333 0.00 0.00 0.00 2.24
38 39 8.208718 TCTACAATGTTGATTAGGTGCATTAC 57.791 34.615 0.00 0.00 0.00 1.89
39 40 7.012327 GCTCTACAATGTTGATTAGGTGCATTA 59.988 37.037 0.00 0.00 0.00 1.90
40 41 6.183360 GCTCTACAATGTTGATTAGGTGCATT 60.183 38.462 0.00 0.00 0.00 3.56
41 42 5.297776 GCTCTACAATGTTGATTAGGTGCAT 59.702 40.000 0.00 0.00 0.00 3.96
42 43 4.635765 GCTCTACAATGTTGATTAGGTGCA 59.364 41.667 0.00 0.00 0.00 4.57
43 44 4.635765 TGCTCTACAATGTTGATTAGGTGC 59.364 41.667 0.00 0.00 0.00 5.01
44 45 6.017605 GGATGCTCTACAATGTTGATTAGGTG 60.018 42.308 0.00 0.00 0.00 4.00
45 46 6.058183 GGATGCTCTACAATGTTGATTAGGT 58.942 40.000 0.00 0.00 0.00 3.08
46 47 6.204301 CAGGATGCTCTACAATGTTGATTAGG 59.796 42.308 0.00 0.00 0.00 2.69
47 48 6.765036 ACAGGATGCTCTACAATGTTGATTAG 59.235 38.462 0.00 0.00 42.53 1.73
48 49 6.653020 ACAGGATGCTCTACAATGTTGATTA 58.347 36.000 0.00 0.00 42.53 1.75
49 50 5.503927 ACAGGATGCTCTACAATGTTGATT 58.496 37.500 0.00 0.00 42.53 2.57
50 51 5.108187 ACAGGATGCTCTACAATGTTGAT 57.892 39.130 0.00 0.00 42.53 2.57
51 52 4.558226 ACAGGATGCTCTACAATGTTGA 57.442 40.909 0.00 0.00 42.53 3.18
52 53 5.643348 TGTAACAGGATGCTCTACAATGTTG 59.357 40.000 0.00 0.00 42.53 3.33
53 54 5.804639 TGTAACAGGATGCTCTACAATGTT 58.195 37.500 0.00 0.00 42.53 2.71
54 55 5.420725 TGTAACAGGATGCTCTACAATGT 57.579 39.130 3.88 0.00 42.53 2.71
55 56 6.372659 AGTTTGTAACAGGATGCTCTACAATG 59.627 38.462 15.19 0.00 42.53 2.82
56 57 6.476378 AGTTTGTAACAGGATGCTCTACAAT 58.524 36.000 15.19 3.84 42.53 2.71
57 58 5.865085 AGTTTGTAACAGGATGCTCTACAA 58.135 37.500 12.05 12.05 42.53 2.41
58 59 5.483685 AGTTTGTAACAGGATGCTCTACA 57.516 39.130 2.53 2.53 42.53 2.74
59 60 5.701290 ACAAGTTTGTAACAGGATGCTCTAC 59.299 40.000 0.00 0.00 38.91 2.59
60 61 5.865085 ACAAGTTTGTAACAGGATGCTCTA 58.135 37.500 0.00 0.00 38.91 2.43
61 62 4.718961 ACAAGTTTGTAACAGGATGCTCT 58.281 39.130 0.00 0.00 38.91 4.09
62 63 5.239525 AGAACAAGTTTGTAACAGGATGCTC 59.760 40.000 0.00 0.00 39.60 4.26
63 64 5.009010 CAGAACAAGTTTGTAACAGGATGCT 59.991 40.000 0.00 0.00 39.60 3.79
64 65 5.008613 TCAGAACAAGTTTGTAACAGGATGC 59.991 40.000 0.00 0.00 39.60 3.91
65 66 6.618287 TCAGAACAAGTTTGTAACAGGATG 57.382 37.500 0.00 0.00 41.31 3.51
66 67 6.431234 GGATCAGAACAAGTTTGTAACAGGAT 59.569 38.462 0.00 4.30 41.31 3.24
67 68 5.763204 GGATCAGAACAAGTTTGTAACAGGA 59.237 40.000 0.00 0.31 41.31 3.86
68 69 5.765182 AGGATCAGAACAAGTTTGTAACAGG 59.235 40.000 0.00 0.00 41.31 4.00
69 70 6.662616 CAGGATCAGAACAAGTTTGTAACAG 58.337 40.000 0.00 0.00 41.31 3.16
70 71 5.008613 GCAGGATCAGAACAAGTTTGTAACA 59.991 40.000 0.00 0.00 41.31 2.41
71 72 5.008613 TGCAGGATCAGAACAAGTTTGTAAC 59.991 40.000 0.00 0.00 41.31 2.50
72 73 5.129634 TGCAGGATCAGAACAAGTTTGTAA 58.870 37.500 0.00 0.00 41.31 2.41
73 74 4.713553 TGCAGGATCAGAACAAGTTTGTA 58.286 39.130 0.00 0.00 41.31 2.41
74 75 3.554934 TGCAGGATCAGAACAAGTTTGT 58.445 40.909 0.00 0.00 44.72 2.83
75 76 4.572985 TTGCAGGATCAGAACAAGTTTG 57.427 40.909 0.00 0.00 0.00 2.93
76 77 5.796424 ATTTGCAGGATCAGAACAAGTTT 57.204 34.783 0.00 0.00 0.00 2.66
77 78 5.796424 AATTTGCAGGATCAGAACAAGTT 57.204 34.783 0.00 0.00 0.00 2.66
78 79 6.899393 TTAATTTGCAGGATCAGAACAAGT 57.101 33.333 0.00 0.00 0.00 3.16
79 80 6.755141 CCATTAATTTGCAGGATCAGAACAAG 59.245 38.462 0.00 0.00 0.00 3.16
80 81 6.351202 CCCATTAATTTGCAGGATCAGAACAA 60.351 38.462 0.00 0.00 0.00 2.83
81 82 5.127519 CCCATTAATTTGCAGGATCAGAACA 59.872 40.000 0.00 0.00 0.00 3.18
82 83 5.452356 CCCCATTAATTTGCAGGATCAGAAC 60.452 44.000 0.00 0.00 0.00 3.01
83 84 4.650588 CCCCATTAATTTGCAGGATCAGAA 59.349 41.667 0.00 0.00 0.00 3.02
84 85 4.079269 TCCCCATTAATTTGCAGGATCAGA 60.079 41.667 0.00 0.00 0.00 3.27
85 86 4.217510 TCCCCATTAATTTGCAGGATCAG 58.782 43.478 0.00 0.00 0.00 2.90
86 87 4.217510 CTCCCCATTAATTTGCAGGATCA 58.782 43.478 0.00 0.00 0.00 2.92
87 88 3.575687 CCTCCCCATTAATTTGCAGGATC 59.424 47.826 0.00 0.00 0.00 3.36
88 89 3.207321 TCCTCCCCATTAATTTGCAGGAT 59.793 43.478 0.00 0.00 0.00 3.24
89 90 2.584965 TCCTCCCCATTAATTTGCAGGA 59.415 45.455 0.00 0.00 0.00 3.86
90 91 3.030873 TCCTCCCCATTAATTTGCAGG 57.969 47.619 0.00 0.00 0.00 4.85
91 92 4.280819 TCTTCCTCCCCATTAATTTGCAG 58.719 43.478 0.00 0.00 0.00 4.41
92 93 4.329638 TCTTCCTCCCCATTAATTTGCA 57.670 40.909 0.00 0.00 0.00 4.08
93 94 4.711846 AGTTCTTCCTCCCCATTAATTTGC 59.288 41.667 0.00 0.00 0.00 3.68
94 95 6.547510 CCTAGTTCTTCCTCCCCATTAATTTG 59.452 42.308 0.00 0.00 0.00 2.32
95 96 6.354829 CCCTAGTTCTTCCTCCCCATTAATTT 60.355 42.308 0.00 0.00 0.00 1.82
96 97 5.134509 CCCTAGTTCTTCCTCCCCATTAATT 59.865 44.000 0.00 0.00 0.00 1.40
97 98 4.665483 CCCTAGTTCTTCCTCCCCATTAAT 59.335 45.833 0.00 0.00 0.00 1.40
98 99 4.045022 CCCTAGTTCTTCCTCCCCATTAA 58.955 47.826 0.00 0.00 0.00 1.40
99 100 3.276578 TCCCTAGTTCTTCCTCCCCATTA 59.723 47.826 0.00 0.00 0.00 1.90
100 101 2.047296 TCCCTAGTTCTTCCTCCCCATT 59.953 50.000 0.00 0.00 0.00 3.16
101 102 1.657162 TCCCTAGTTCTTCCTCCCCAT 59.343 52.381 0.00 0.00 0.00 4.00
102 103 1.008449 CTCCCTAGTTCTTCCTCCCCA 59.992 57.143 0.00 0.00 0.00 4.96
103 104 1.693083 CCTCCCTAGTTCTTCCTCCCC 60.693 61.905 0.00 0.00 0.00 4.81
104 105 1.693083 CCCTCCCTAGTTCTTCCTCCC 60.693 61.905 0.00 0.00 0.00 4.30
105 106 1.291335 TCCCTCCCTAGTTCTTCCTCC 59.709 57.143 0.00 0.00 0.00 4.30
106 107 2.673258 CTCCCTCCCTAGTTCTTCCTC 58.327 57.143 0.00 0.00 0.00 3.71
107 108 1.292546 CCTCCCTCCCTAGTTCTTCCT 59.707 57.143 0.00 0.00 0.00 3.36
108 109 1.693083 CCCTCCCTCCCTAGTTCTTCC 60.693 61.905 0.00 0.00 0.00 3.46
109 110 1.291335 TCCCTCCCTCCCTAGTTCTTC 59.709 57.143 0.00 0.00 0.00 2.87
110 111 1.405243 TCCCTCCCTCCCTAGTTCTT 58.595 55.000 0.00 0.00 0.00 2.52
111 112 1.405243 TTCCCTCCCTCCCTAGTTCT 58.595 55.000 0.00 0.00 0.00 3.01
112 113 2.050918 CATTCCCTCCCTCCCTAGTTC 58.949 57.143 0.00 0.00 0.00 3.01
113 114 1.345526 CCATTCCCTCCCTCCCTAGTT 60.346 57.143 0.00 0.00 0.00 2.24
114 115 0.269173 CCATTCCCTCCCTCCCTAGT 59.731 60.000 0.00 0.00 0.00 2.57
115 116 0.269173 ACCATTCCCTCCCTCCCTAG 59.731 60.000 0.00 0.00 0.00 3.02
116 117 1.640202 TACCATTCCCTCCCTCCCTA 58.360 55.000 0.00 0.00 0.00 3.53
117 118 0.728843 TTACCATTCCCTCCCTCCCT 59.271 55.000 0.00 0.00 0.00 4.20
118 119 1.425448 CATTACCATTCCCTCCCTCCC 59.575 57.143 0.00 0.00 0.00 4.30
119 120 2.136026 ACATTACCATTCCCTCCCTCC 58.864 52.381 0.00 0.00 0.00 4.30
120 121 3.953542 AACATTACCATTCCCTCCCTC 57.046 47.619 0.00 0.00 0.00 4.30
121 122 3.596046 TGAAACATTACCATTCCCTCCCT 59.404 43.478 0.00 0.00 0.00 4.20
122 123 3.954258 CTGAAACATTACCATTCCCTCCC 59.046 47.826 0.00 0.00 0.00 4.30
123 124 4.855340 TCTGAAACATTACCATTCCCTCC 58.145 43.478 0.00 0.00 0.00 4.30
124 125 5.745227 TCTCTGAAACATTACCATTCCCTC 58.255 41.667 0.00 0.00 0.00 4.30
125 126 5.779241 TCTCTGAAACATTACCATTCCCT 57.221 39.130 0.00 0.00 0.00 4.20
126 127 6.180472 TCTTCTCTGAAACATTACCATTCCC 58.820 40.000 0.00 0.00 0.00 3.97
127 128 7.174946 TGTTCTTCTCTGAAACATTACCATTCC 59.825 37.037 0.00 0.00 0.00 3.01
128 129 8.099364 TGTTCTTCTCTGAAACATTACCATTC 57.901 34.615 0.00 0.00 0.00 2.67
129 130 8.463930 TTGTTCTTCTCTGAAACATTACCATT 57.536 30.769 0.00 0.00 0.00 3.16
130 131 8.641498 ATTGTTCTTCTCTGAAACATTACCAT 57.359 30.769 0.00 0.00 0.00 3.55
131 132 9.219603 CTATTGTTCTTCTCTGAAACATTACCA 57.780 33.333 0.00 0.00 0.00 3.25
132 133 9.220767 ACTATTGTTCTTCTCTGAAACATTACC 57.779 33.333 0.00 0.00 0.00 2.85
137 138 8.721478 GCATTACTATTGTTCTTCTCTGAAACA 58.279 33.333 0.00 0.00 0.00 2.83
138 139 8.940952 AGCATTACTATTGTTCTTCTCTGAAAC 58.059 33.333 0.00 0.00 0.00 2.78
139 140 9.155975 GAGCATTACTATTGTTCTTCTCTGAAA 57.844 33.333 0.00 0.00 0.00 2.69
140 141 7.766278 GGAGCATTACTATTGTTCTTCTCTGAA 59.234 37.037 0.00 0.00 0.00 3.02
141 142 7.093333 TGGAGCATTACTATTGTTCTTCTCTGA 60.093 37.037 0.00 0.00 0.00 3.27
142 143 7.044181 TGGAGCATTACTATTGTTCTTCTCTG 58.956 38.462 0.00 0.00 0.00 3.35
143 144 7.187824 TGGAGCATTACTATTGTTCTTCTCT 57.812 36.000 0.00 0.00 0.00 3.10
144 145 9.717942 ATATGGAGCATTACTATTGTTCTTCTC 57.282 33.333 0.00 0.00 0.00 2.87
147 148 9.442047 GCTATATGGAGCATTACTATTGTTCTT 57.558 33.333 0.00 0.00 42.36 2.52
172 173 7.388776 TCAGAACATATGGAGCATTACTATTGC 59.611 37.037 7.80 0.00 40.45 3.56
173 174 8.837788 TCAGAACATATGGAGCATTACTATTG 57.162 34.615 7.80 0.00 0.00 1.90
174 175 9.664332 GATCAGAACATATGGAGCATTACTATT 57.336 33.333 7.80 0.00 0.00 1.73
175 176 8.263640 GGATCAGAACATATGGAGCATTACTAT 58.736 37.037 7.80 0.00 0.00 2.12
176 177 7.235399 TGGATCAGAACATATGGAGCATTACTA 59.765 37.037 7.80 0.00 0.00 1.82
177 178 6.043590 TGGATCAGAACATATGGAGCATTACT 59.956 38.462 7.80 0.00 0.00 2.24
178 179 6.233434 TGGATCAGAACATATGGAGCATTAC 58.767 40.000 7.80 0.00 0.00 1.89
179 180 6.438186 TGGATCAGAACATATGGAGCATTA 57.562 37.500 7.80 0.00 0.00 1.90
180 181 5.314718 TGGATCAGAACATATGGAGCATT 57.685 39.130 7.80 0.00 0.00 3.56
181 182 4.987963 TGGATCAGAACATATGGAGCAT 57.012 40.909 7.80 0.00 0.00 3.79
182 183 4.987963 ATGGATCAGAACATATGGAGCA 57.012 40.909 7.80 0.00 0.00 4.26
183 184 6.705381 GCTATATGGATCAGAACATATGGAGC 59.295 42.308 18.34 15.43 39.48 4.70
184 185 7.789026 TGCTATATGGATCAGAACATATGGAG 58.211 38.462 18.34 11.61 39.48 3.86
185 186 7.738437 TGCTATATGGATCAGAACATATGGA 57.262 36.000 18.34 9.77 39.48 3.41
186 187 8.797350 TTTGCTATATGGATCAGAACATATGG 57.203 34.615 16.01 14.63 39.77 2.74
190 191 8.985315 TCTTTTTGCTATATGGATCAGAACAT 57.015 30.769 0.00 0.00 0.00 2.71
191 192 8.677300 GTTCTTTTTGCTATATGGATCAGAACA 58.323 33.333 0.00 0.00 32.41 3.18
192 193 8.897752 AGTTCTTTTTGCTATATGGATCAGAAC 58.102 33.333 0.00 0.00 0.00 3.01
194 195 9.770097 CTAGTTCTTTTTGCTATATGGATCAGA 57.230 33.333 0.00 0.00 0.00 3.27
195 196 8.997323 CCTAGTTCTTTTTGCTATATGGATCAG 58.003 37.037 0.00 0.00 0.00 2.90
196 197 7.939039 CCCTAGTTCTTTTTGCTATATGGATCA 59.061 37.037 0.00 0.00 0.00 2.92
197 198 8.157476 TCCCTAGTTCTTTTTGCTATATGGATC 58.843 37.037 0.00 0.00 0.00 3.36
198 199 8.045720 TCCCTAGTTCTTTTTGCTATATGGAT 57.954 34.615 0.00 0.00 0.00 3.41
199 200 7.420214 CCTCCCTAGTTCTTTTTGCTATATGGA 60.420 40.741 0.00 0.00 0.00 3.41
200 201 6.712547 CCTCCCTAGTTCTTTTTGCTATATGG 59.287 42.308 0.00 0.00 0.00 2.74
201 202 6.712547 CCCTCCCTAGTTCTTTTTGCTATATG 59.287 42.308 0.00 0.00 0.00 1.78
202 203 6.619852 TCCCTCCCTAGTTCTTTTTGCTATAT 59.380 38.462 0.00 0.00 0.00 0.86
203 204 5.968167 TCCCTCCCTAGTTCTTTTTGCTATA 59.032 40.000 0.00 0.00 0.00 1.31
204 205 4.788617 TCCCTCCCTAGTTCTTTTTGCTAT 59.211 41.667 0.00 0.00 0.00 2.97
205 206 4.172807 TCCCTCCCTAGTTCTTTTTGCTA 58.827 43.478 0.00 0.00 0.00 3.49
206 207 2.986728 TCCCTCCCTAGTTCTTTTTGCT 59.013 45.455 0.00 0.00 0.00 3.91
207 208 3.348119 CTCCCTCCCTAGTTCTTTTTGC 58.652 50.000 0.00 0.00 0.00 3.68
208 209 3.308473 CCCTCCCTCCCTAGTTCTTTTTG 60.308 52.174 0.00 0.00 0.00 2.44
209 210 2.920271 CCCTCCCTCCCTAGTTCTTTTT 59.080 50.000 0.00 0.00 0.00 1.94
210 211 2.115605 TCCCTCCCTCCCTAGTTCTTTT 59.884 50.000 0.00 0.00 0.00 2.27
211 212 1.728701 TCCCTCCCTCCCTAGTTCTTT 59.271 52.381 0.00 0.00 0.00 2.52
212 213 1.405243 TCCCTCCCTCCCTAGTTCTT 58.595 55.000 0.00 0.00 0.00 2.52
213 214 1.405243 TTCCCTCCCTCCCTAGTTCT 58.595 55.000 0.00 0.00 0.00 3.01
214 215 2.050918 CATTCCCTCCCTCCCTAGTTC 58.949 57.143 0.00 0.00 0.00 3.01
215 216 1.345526 CCATTCCCTCCCTCCCTAGTT 60.346 57.143 0.00 0.00 0.00 2.24
216 217 0.269173 CCATTCCCTCCCTCCCTAGT 59.731 60.000 0.00 0.00 0.00 2.57
217 218 0.474660 CCCATTCCCTCCCTCCCTAG 60.475 65.000 0.00 0.00 0.00 3.02
218 219 1.637958 CCCATTCCCTCCCTCCCTA 59.362 63.158 0.00 0.00 0.00 3.53
219 220 2.378522 CCCATTCCCTCCCTCCCT 59.621 66.667 0.00 0.00 0.00 4.20
220 221 2.778717 CCCCATTCCCTCCCTCCC 60.779 72.222 0.00 0.00 0.00 4.30
221 222 1.772156 CTCCCCATTCCCTCCCTCC 60.772 68.421 0.00 0.00 0.00 4.30
222 223 1.772156 CCTCCCCATTCCCTCCCTC 60.772 68.421 0.00 0.00 0.00 4.30
223 224 1.848835 TTCCTCCCCATTCCCTCCCT 61.849 60.000 0.00 0.00 0.00 4.20
224 225 1.308746 TTCCTCCCCATTCCCTCCC 60.309 63.158 0.00 0.00 0.00 4.30
225 226 1.356494 CCTTCCTCCCCATTCCCTCC 61.356 65.000 0.00 0.00 0.00 4.30
226 227 1.356494 CCCTTCCTCCCCATTCCCTC 61.356 65.000 0.00 0.00 0.00 4.30
227 228 1.309102 CCCTTCCTCCCCATTCCCT 60.309 63.158 0.00 0.00 0.00 4.20
228 229 1.622752 ACCCTTCCTCCCCATTCCC 60.623 63.158 0.00 0.00 0.00 3.97
229 230 1.615262 CACCCTTCCTCCCCATTCC 59.385 63.158 0.00 0.00 0.00 3.01
230 231 0.919289 TCCACCCTTCCTCCCCATTC 60.919 60.000 0.00 0.00 0.00 2.67
231 232 0.921256 CTCCACCCTTCCTCCCCATT 60.921 60.000 0.00 0.00 0.00 3.16
232 233 1.308216 CTCCACCCTTCCTCCCCAT 60.308 63.158 0.00 0.00 0.00 4.00
233 234 2.124996 CTCCACCCTTCCTCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
234 235 1.690985 CTCTCCACCCTTCCTCCCC 60.691 68.421 0.00 0.00 0.00 4.81
235 236 1.690985 CCTCTCCACCCTTCCTCCC 60.691 68.421 0.00 0.00 0.00 4.30
236 237 1.690985 CCCTCTCCACCCTTCCTCC 60.691 68.421 0.00 0.00 0.00 4.30
237 238 0.689412 CTCCCTCTCCACCCTTCCTC 60.689 65.000 0.00 0.00 0.00 3.71
238 239 1.394151 CTCCCTCTCCACCCTTCCT 59.606 63.158 0.00 0.00 0.00 3.36
239 240 1.690985 CCTCCCTCTCCACCCTTCC 60.691 68.421 0.00 0.00 0.00 3.46
240 241 0.252742 TTCCTCCCTCTCCACCCTTC 60.253 60.000 0.00 0.00 0.00 3.46
241 242 0.252927 CTTCCTCCCTCTCCACCCTT 60.253 60.000 0.00 0.00 0.00 3.95
242 243 1.394151 CTTCCTCCCTCTCCACCCT 59.606 63.158 0.00 0.00 0.00 4.34
243 244 1.690985 CCTTCCTCCCTCTCCACCC 60.691 68.421 0.00 0.00 0.00 4.61
244 245 0.689412 CTCCTTCCTCCCTCTCCACC 60.689 65.000 0.00 0.00 0.00 4.61
245 246 0.689412 CCTCCTTCCTCCCTCTCCAC 60.689 65.000 0.00 0.00 0.00 4.02
246 247 0.855855 TCCTCCTTCCTCCCTCTCCA 60.856 60.000 0.00 0.00 0.00 3.86
247 248 0.105709 CTCCTCCTTCCTCCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
248 249 0.930726 TCTCCTCCTTCCTCCCTCTC 59.069 60.000 0.00 0.00 0.00 3.20
249 250 0.933700 CTCTCCTCCTTCCTCCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
250 251 0.105709 CCTCTCCTCCTTCCTCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
251 252 0.858139 ACCTCTCCTCCTTCCTCCCT 60.858 60.000 0.00 0.00 0.00 4.20
252 253 0.689412 CACCTCTCCTCCTTCCTCCC 60.689 65.000 0.00 0.00 0.00 4.30
253 254 0.041982 ACACCTCTCCTCCTTCCTCC 59.958 60.000 0.00 0.00 0.00 4.30
254 255 1.552792 CAACACCTCTCCTCCTTCCTC 59.447 57.143 0.00 0.00 0.00 3.71
255 256 1.650528 CAACACCTCTCCTCCTTCCT 58.349 55.000 0.00 0.00 0.00 3.36
256 257 0.035915 GCAACACCTCTCCTCCTTCC 60.036 60.000 0.00 0.00 0.00 3.46
257 258 0.390472 CGCAACACCTCTCCTCCTTC 60.390 60.000 0.00 0.00 0.00 3.46
258 259 1.674057 CGCAACACCTCTCCTCCTT 59.326 57.895 0.00 0.00 0.00 3.36
259 260 2.286523 CCGCAACACCTCTCCTCCT 61.287 63.158 0.00 0.00 0.00 3.69
260 261 2.266055 CCGCAACACCTCTCCTCC 59.734 66.667 0.00 0.00 0.00 4.30
261 262 2.266055 CCCGCAACACCTCTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
262 263 4.021925 GCCCGCAACACCTCTCCT 62.022 66.667 0.00 0.00 0.00 3.69
264 265 3.665675 ATCGCCCGCAACACCTCTC 62.666 63.158 0.00 0.00 0.00 3.20
265 266 2.748058 AAATCGCCCGCAACACCTCT 62.748 55.000 0.00 0.00 0.00 3.69
266 267 2.332654 AAATCGCCCGCAACACCTC 61.333 57.895 0.00 0.00 0.00 3.85
267 268 2.282180 AAATCGCCCGCAACACCT 60.282 55.556 0.00 0.00 0.00 4.00
268 269 2.126502 CAAATCGCCCGCAACACC 60.127 61.111 0.00 0.00 0.00 4.16
269 270 1.154225 CTCAAATCGCCCGCAACAC 60.154 57.895 0.00 0.00 0.00 3.32
270 271 2.331893 CCTCAAATCGCCCGCAACA 61.332 57.895 0.00 0.00 0.00 3.33
271 272 2.485122 CCTCAAATCGCCCGCAAC 59.515 61.111 0.00 0.00 0.00 4.17
272 273 2.749839 CCCTCAAATCGCCCGCAA 60.750 61.111 0.00 0.00 0.00 4.85
275 276 4.794648 TGGCCCTCAAATCGCCCG 62.795 66.667 0.00 0.00 42.29 6.13
276 277 2.830370 CTGGCCCTCAAATCGCCC 60.830 66.667 0.00 0.00 42.29 6.13
277 278 3.521796 GCTGGCCCTCAAATCGCC 61.522 66.667 0.00 0.00 43.32 5.54
278 279 3.880846 CGCTGGCCCTCAAATCGC 61.881 66.667 0.00 0.00 0.00 4.58
279 280 2.040544 AACGCTGGCCCTCAAATCG 61.041 57.895 0.00 0.00 0.00 3.34
280 281 0.960364 TCAACGCTGGCCCTCAAATC 60.960 55.000 0.00 0.00 0.00 2.17
281 282 0.539438 TTCAACGCTGGCCCTCAAAT 60.539 50.000 0.00 0.00 0.00 2.32
282 283 1.152860 TTCAACGCTGGCCCTCAAA 60.153 52.632 0.00 0.00 0.00 2.69
283 284 1.600636 CTTCAACGCTGGCCCTCAA 60.601 57.895 0.00 0.00 0.00 3.02
284 285 1.841302 ATCTTCAACGCTGGCCCTCA 61.841 55.000 0.00 0.00 0.00 3.86
285 286 1.078143 ATCTTCAACGCTGGCCCTC 60.078 57.895 0.00 0.00 0.00 4.30
286 287 1.377725 CATCTTCAACGCTGGCCCT 60.378 57.895 0.00 0.00 0.00 5.19
287 288 3.056313 GCATCTTCAACGCTGGCCC 62.056 63.158 0.00 0.00 0.00 5.80
288 289 2.486966 GCATCTTCAACGCTGGCC 59.513 61.111 0.00 0.00 0.00 5.36
289 290 2.486966 GGCATCTTCAACGCTGGC 59.513 61.111 0.00 0.00 0.00 4.85
290 291 2.409870 GGGGCATCTTCAACGCTGG 61.410 63.158 0.00 0.00 0.00 4.85
291 292 1.243342 TTGGGGCATCTTCAACGCTG 61.243 55.000 0.00 0.00 0.00 5.18
292 293 1.074775 TTGGGGCATCTTCAACGCT 59.925 52.632 0.00 0.00 0.00 5.07
293 294 1.212751 GTTGGGGCATCTTCAACGC 59.787 57.895 0.00 0.00 32.78 4.84
294 295 1.176527 ATGTTGGGGCATCTTCAACG 58.823 50.000 0.00 0.00 42.41 4.10
295 296 4.021544 TGTTAATGTTGGGGCATCTTCAAC 60.022 41.667 0.00 0.00 40.59 3.18
296 297 4.155709 TGTTAATGTTGGGGCATCTTCAA 58.844 39.130 0.00 0.00 0.00 2.69
297 298 3.772387 TGTTAATGTTGGGGCATCTTCA 58.228 40.909 0.00 0.00 0.00 3.02
298 299 5.343307 AATGTTAATGTTGGGGCATCTTC 57.657 39.130 0.00 0.00 0.00 2.87
299 300 5.012975 ACAAATGTTAATGTTGGGGCATCTT 59.987 36.000 0.00 0.00 0.00 2.40
300 301 4.531732 ACAAATGTTAATGTTGGGGCATCT 59.468 37.500 0.00 0.00 0.00 2.90
301 302 4.831107 ACAAATGTTAATGTTGGGGCATC 58.169 39.130 0.00 0.00 0.00 3.91
302 303 4.906747 ACAAATGTTAATGTTGGGGCAT 57.093 36.364 0.00 0.00 0.00 4.40
303 304 5.808366 TTACAAATGTTAATGTTGGGGCA 57.192 34.783 0.00 0.00 0.00 5.36
304 305 6.876257 TCATTTACAAATGTTAATGTTGGGGC 59.124 34.615 19.04 0.00 44.66 5.80
305 306 7.875041 TGTCATTTACAAATGTTAATGTTGGGG 59.125 33.333 19.04 0.60 44.66 4.96
306 307 8.707839 GTGTCATTTACAAATGTTAATGTTGGG 58.292 33.333 19.04 1.15 44.66 4.12
307 308 9.254133 TGTGTCATTTACAAATGTTAATGTTGG 57.746 29.630 19.04 1.43 44.66 3.77
315 316 9.429359 TCAGTTTTTGTGTCATTTACAAATGTT 57.571 25.926 13.00 0.00 44.63 2.71
316 317 8.994429 TCAGTTTTTGTGTCATTTACAAATGT 57.006 26.923 13.00 0.00 44.63 2.71
321 322 8.386606 GCAATTTCAGTTTTTGTGTCATTTACA 58.613 29.630 0.00 0.00 35.06 2.41
322 323 8.603181 AGCAATTTCAGTTTTTGTGTCATTTAC 58.397 29.630 0.00 0.00 0.00 2.01
323 324 8.602328 CAGCAATTTCAGTTTTTGTGTCATTTA 58.398 29.630 0.00 0.00 0.00 1.40
324 325 7.465989 CAGCAATTTCAGTTTTTGTGTCATTT 58.534 30.769 0.00 0.00 0.00 2.32
325 326 6.457257 GCAGCAATTTCAGTTTTTGTGTCATT 60.457 34.615 0.00 0.00 0.00 2.57
326 327 5.006941 GCAGCAATTTCAGTTTTTGTGTCAT 59.993 36.000 0.00 0.00 0.00 3.06
327 328 4.329528 GCAGCAATTTCAGTTTTTGTGTCA 59.670 37.500 0.00 0.00 0.00 3.58
328 329 4.260334 GGCAGCAATTTCAGTTTTTGTGTC 60.260 41.667 0.00 0.00 0.00 3.67
329 330 3.622612 GGCAGCAATTTCAGTTTTTGTGT 59.377 39.130 0.00 0.00 0.00 3.72
330 331 3.622163 TGGCAGCAATTTCAGTTTTTGTG 59.378 39.130 0.00 0.00 0.00 3.33
338 339 0.169672 CCGTCTGGCAGCAATTTCAG 59.830 55.000 10.34 0.00 0.00 3.02
377 378 2.035832 CCGTTTTTGAAGCTGGGTTCAT 59.964 45.455 14.54 0.00 36.34 2.57
394 396 3.719883 TTGGTGCGTGTCGTCCGTT 62.720 57.895 0.00 0.00 0.00 4.44
401 403 1.352156 GGATCGTCTTGGTGCGTGTC 61.352 60.000 0.00 0.00 0.00 3.67
405 407 1.209275 GATCGGATCGTCTTGGTGCG 61.209 60.000 1.62 0.00 0.00 5.34
470 473 4.946157 TGCAAAGGAAAAATGGAAAGCAAA 59.054 33.333 0.00 0.00 0.00 3.68
474 477 7.537715 ACTTTTTGCAAAGGAAAAATGGAAAG 58.462 30.769 12.41 10.50 43.47 2.62
510 514 3.325870 CGCTGTGTTGTTCAGATAAGGA 58.674 45.455 0.00 0.00 35.20 3.36
546 550 8.523658 CCATTGATGAGTAATCTATTCCTCGTA 58.476 37.037 0.00 0.00 36.15 3.43
548 552 7.543868 GTCCATTGATGAGTAATCTATTCCTCG 59.456 40.741 0.00 0.00 36.15 4.63
629 636 4.658786 ACGGCTGGGGGAGGAAGT 62.659 66.667 0.00 0.00 0.00 3.01
690 759 2.675075 ATTTTCCGGCCGGGTGTG 60.675 61.111 42.36 18.55 37.00 3.82
706 775 3.943381 TCGAAAATGAATCTGCAGCTGAT 59.057 39.130 20.43 8.92 0.00 2.90
764 833 1.587088 CATGGATTTGAAGCGGCGC 60.587 57.895 26.86 26.86 0.00 6.53
899 973 2.672961 TAAAGCTCTGTCGGGTGATG 57.327 50.000 0.00 0.00 0.00 3.07
900 974 3.432326 GGAATAAAGCTCTGTCGGGTGAT 60.432 47.826 0.00 0.00 0.00 3.06
901 975 2.093658 GGAATAAAGCTCTGTCGGGTGA 60.094 50.000 0.00 0.00 0.00 4.02
903 977 1.209747 GGGAATAAAGCTCTGTCGGGT 59.790 52.381 0.00 0.00 0.00 5.28
904 978 1.475213 GGGGAATAAAGCTCTGTCGGG 60.475 57.143 0.00 0.00 0.00 5.14
987 1072 1.764054 CGGCATCCTCCTCCTCCTT 60.764 63.158 0.00 0.00 0.00 3.36
988 1073 2.123077 CGGCATCCTCCTCCTCCT 60.123 66.667 0.00 0.00 0.00 3.69
1371 1457 4.083749 CGATCTGGAACCGATCTACAGTAG 60.084 50.000 16.71 0.47 36.10 2.57
1402 1488 3.503363 CCAGCAGAGCAATTGAAGTGTAA 59.497 43.478 10.34 0.00 0.00 2.41
1437 1592 6.473758 GCCTTTCCCCTAATACTATCGATTT 58.526 40.000 1.71 0.00 0.00 2.17
1440 1595 3.508793 CGCCTTTCCCCTAATACTATCGA 59.491 47.826 0.00 0.00 0.00 3.59
1446 1601 3.501062 GCATAACGCCTTTCCCCTAATAC 59.499 47.826 0.00 0.00 32.94 1.89
1626 1933 8.450180 CCATTTTGTAAAGAAAATTATGTGGCC 58.550 33.333 0.00 0.00 34.05 5.36
1664 1971 4.148128 CTCAATATGTGGCTCTTGAGGT 57.852 45.455 8.39 0.00 40.43 3.85
1739 2050 9.613428 CCACTATATGGTGATCAAAGTAAAGAA 57.387 33.333 19.86 0.00 44.46 2.52
2094 2441 3.635373 TGTACGAACAGGAAGTGAACTCT 59.365 43.478 0.00 0.00 0.00 3.24
2153 2500 3.005898 CGATCCAATGTCGTGGCG 58.994 61.111 0.00 0.00 38.68 5.69
2348 2701 3.643159 ATTTTGCCGAAGTTCTGTTCC 57.357 42.857 0.56 0.00 0.00 3.62
2353 2706 5.241506 TCATCTTCAATTTTGCCGAAGTTCT 59.758 36.000 0.56 0.00 37.87 3.01
2354 2707 5.460646 TCATCTTCAATTTTGCCGAAGTTC 58.539 37.500 0.00 0.00 37.87 3.01
2411 2764 1.763770 CTTCACAGCCCCTTCACCT 59.236 57.895 0.00 0.00 0.00 4.00
2651 3004 5.460646 ACAAAATAATCAGAAACAGCACCG 58.539 37.500 0.00 0.00 0.00 4.94
2707 3060 6.710744 AGGTAGATGAAAGTACACCTTGTTTG 59.289 38.462 0.00 0.00 32.49 2.93
2880 3236 7.564660 ACAATTCCATTAGGATAATGGCAGAAA 59.435 33.333 19.40 11.39 45.26 2.52
2881 3237 7.068702 ACAATTCCATTAGGATAATGGCAGAA 58.931 34.615 19.40 11.66 45.26 3.02
2899 3255 5.313712 TGGACTGAAGGTTCTAACAATTCC 58.686 41.667 7.27 0.00 0.00 3.01
2997 3353 8.877779 CAGTTAGAGAAACAGTTTGATCCATAG 58.122 37.037 2.34 0.00 40.83 2.23
3069 3426 6.183360 GGGAGAGAAATATTGTCAACCCATTG 60.183 42.308 18.27 0.00 39.62 2.82
3271 3632 4.080299 GGAAGTGTCCTTGACCTGGAATAT 60.080 45.833 0.00 0.00 41.24 1.28
3273 3634 2.040412 GGAAGTGTCCTTGACCTGGAAT 59.960 50.000 0.00 0.00 41.24 3.01
3343 3704 1.654954 GACCCAGCGCGAAGACTAGA 61.655 60.000 12.10 0.00 0.00 2.43
3412 3773 1.628340 ACCATCACCGAGAAATGGACA 59.372 47.619 7.57 0.00 42.13 4.02
3484 3845 0.881118 GGTTCGCCAGCAAGATGAAA 59.119 50.000 0.00 0.00 37.19 2.69
3523 3884 4.826404 TACCCGGCGAGGCTGCTA 62.826 66.667 9.30 0.00 39.21 3.49
3697 4058 2.036731 ACCGGTCGGATCCTCACA 59.963 61.111 16.90 0.00 38.96 3.58
3771 4132 2.034066 CACCGGTCACTGGGCATT 59.966 61.111 2.59 0.00 0.00 3.56
3778 4139 0.180406 AAACAAGCTCACCGGTCACT 59.820 50.000 2.59 0.00 0.00 3.41
3865 4233 1.927174 CGCAATACAGACTACAGTGCC 59.073 52.381 0.00 0.00 0.00 5.01
3867 4235 3.232213 ACCGCAATACAGACTACAGTG 57.768 47.619 0.00 0.00 0.00 3.66
3868 4236 3.955650 AACCGCAATACAGACTACAGT 57.044 42.857 0.00 0.00 0.00 3.55
4208 4576 1.815408 GCAGGTCAACCAGAAAGCAGA 60.815 52.381 1.33 0.00 38.89 4.26
4212 4580 1.202806 TCCAGCAGGTCAACCAGAAAG 60.203 52.381 1.33 0.00 38.89 2.62
4249 4617 5.455525 GTGTCAACTCAGTTGTTACATTTGC 59.544 40.000 17.27 0.55 43.23 3.68
4371 4740 6.635030 AAAATTCAGTTACAAGTGACCTCC 57.365 37.500 0.00 0.00 38.04 4.30
4402 4772 3.266772 TGGTAGGATCACTGGCTTTGAAT 59.733 43.478 0.00 0.00 0.00 2.57
4498 4872 1.270518 GCTGACAGTGTGACATCCAGT 60.271 52.381 0.00 0.00 0.00 4.00
4514 4888 2.416747 CGAGGAATTGTGAACAGCTGA 58.583 47.619 23.35 0.00 0.00 4.26
4519 4893 2.254546 ACTGCGAGGAATTGTGAACA 57.745 45.000 0.00 0.00 0.00 3.18
4520 4894 3.300009 CAAACTGCGAGGAATTGTGAAC 58.700 45.455 0.00 0.00 0.00 3.18
4538 4912 3.360867 TGAAGTCAAGGAGCAAACCAAA 58.639 40.909 0.00 0.00 0.00 3.28
4563 4937 3.860754 GCCTTAACACAGCCCATTTCAAC 60.861 47.826 0.00 0.00 0.00 3.18
4618 4992 4.709886 TCTTATCATCGTCCCAGAACTTGA 59.290 41.667 0.00 0.00 0.00 3.02
4651 5025 3.371097 TTCCTGATGGCGTCCGCTC 62.371 63.158 11.82 2.89 41.60 5.03
4653 5027 2.892425 CTTCCTGATGGCGTCCGC 60.892 66.667 3.88 2.45 41.06 5.54
4676 5050 0.671472 TGCAGAAGACCTGTGCATCG 60.671 55.000 0.00 0.00 42.20 3.84
4679 5053 1.071987 CCTGCAGAAGACCTGTGCA 59.928 57.895 17.39 0.00 44.80 4.57
4725 5260 7.551974 TGACAGCCAAAATCAAATTTCTGAAAA 59.448 29.630 6.95 0.00 30.55 2.29
4754 5289 2.366469 ACCACCACTCTTCATCGCT 58.634 52.632 0.00 0.00 0.00 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.